RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15570
(84 letters)
>gnl|CDD|234929 PRK01259, PRK01259, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 309
Score = 77.1 bits (191), Expect = 1e-18
Identities = 32/63 (50%), Positives = 41/63 (65%)
Query: 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 79
++GDV GR I+VDDM+D + AAE LK+RGA +Y ATH +LS A IE S I
Sbjct: 202 IIGDVEGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAYATHPVLSGGAIERIENSVI 261
Query: 80 DEV 82
DE+
Sbjct: 262 DEL 264
>gnl|CDD|223538 COG0462, PrsA, Phosphoribosylpyrophosphate synthetase [Nucleotide
transport and metabolism / Amino acid transport and
metabolism].
Length = 314
Score = 77.2 bits (191), Expect = 1e-18
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 18 ISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEES 77
++++GDV G+ ++VDD++D + AA+ LK+RGA K+Y ATHG+ S A +E S
Sbjct: 206 MNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFSGAALERLEAS 265
Query: 78 PIDEV 82
IDEV
Sbjct: 266 AIDEV 270
>gnl|CDD|130318 TIGR01251, ribP_PPkin, ribose-phosphate pyrophosphokinase.
Alternate name: phosphoribosylpyrophosphate synthetase
In some systems, close homologs lacking enzymatic
activity exist and perform regulatory functions. The
model is designated subfamily rather than equivalog for
this reason [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 308
Score = 73.5 bits (181), Expect = 2e-17
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 17 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE 76
+++VGDV G+ ++VDD++D + AAE+LK GA ++ ATHG+ S A I
Sbjct: 201 VMNLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAAATHGVFSGPAIERIAN 260
Query: 77 SPIDEV 82
+ ++EV
Sbjct: 261 AGVEEV 266
>gnl|CDD|179535 PRK03092, PRK03092, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 304
Score = 66.1 bits (162), Expect = 1e-14
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 79
VVGDV GR ++VDDM+D + A LK+ GA + + ATHG+LS A ++
Sbjct: 195 VVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCGA 254
Query: 80 DEV 82
EV
Sbjct: 255 REV 257
>gnl|CDD|215209 PLN02369, PLN02369, ribose-phosphate pyrophosphokinase.
Length = 302
Score = 63.6 bits (155), Expect = 1e-13
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 17 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE 76
++++GDV G+VAIMVDDM+D + A +L GA ++Y ATH + S A +
Sbjct: 193 VMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVFSPPAIERLSS 252
Query: 77 SPIDEV 82
EV
Sbjct: 253 GLFQEV 258
>gnl|CDD|240290 PTZ00145, PTZ00145, phosphoribosylpyrophosphate synthetase;
Provisional.
Length = 439
Score = 60.3 bits (146), Expect = 2e-12
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 79
+VG+V I+VDDM+D + AA+ LK GA +++ ATHGL S A IE SP+
Sbjct: 329 LVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIERIEASPL 388
Query: 80 DEV 82
+EV
Sbjct: 389 EEV 391
>gnl|CDD|235039 PRK02458, PRK02458, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 323
Score = 59.4 bits (144), Expect = 4e-12
Identities = 24/63 (38%), Positives = 45/63 (71%)
Query: 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 79
++GDV G+ AI++DD+++ +F AA++++ GA +IY +A+HGL + A ++E +PI
Sbjct: 212 IIGDVAGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLFAGGAAEVLENAPI 271
Query: 80 DEV 82
E+
Sbjct: 272 KEI 274
>gnl|CDD|179062 PRK00553, PRK00553, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 332
Score = 56.8 bits (137), Expect = 3e-11
Identities = 28/70 (40%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 8 PQHPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLS 67
P+H E I+V+G+V + ++VDDM+D + +AAA++LK + A K+ V+ATHGL +
Sbjct: 202 PKHNVAES--INVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLFN 259
Query: 68 SDAPLLIEES 77
+A L +E+
Sbjct: 260 KNAIQLFDEA 269
>gnl|CDD|167353 PRK02269, PRK02269, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 320
Score = 56.3 bits (136), Expect = 4e-11
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 19 SVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESP 78
+++G+V G+ I++DDM+D + AA+ L + GA ++Y TH +LS A I++S
Sbjct: 210 NIIGNVKGKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHPVLSGPALDNIQKSA 269
Query: 79 IDEV 82
I+++
Sbjct: 270 IEKL 273
>gnl|CDD|179893 PRK04923, PRK04923, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 319
Score = 55.3 bits (133), Expect = 1e-10
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 12 AKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAP 71
A ++++GDV G+ ++VDD+VD + AAA LK RGA K+ TH +LS A
Sbjct: 203 ANVATVMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVLSGPAV 262
Query: 72 LLIEESPIDEV 82
I S +DE+
Sbjct: 263 DNINNSQLDEL 273
>gnl|CDD|235072 PRK02812, PRK02812, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 330
Score = 53.2 bits (128), Expect = 6e-10
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 18 ISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDA 70
++V+GDV G+ AI+VDDM+D + A +L+ GA ++Y ATH + S A
Sbjct: 222 LNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACATHAVFSPPA 274
>gnl|CDD|234868 PRK00934, PRK00934, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 285
Score = 49.9 bits (120), Expect = 9e-09
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82
DV G+ ++VDD++ + A ++LK++GA K+YV H +L DA L + + +DE+
Sbjct: 201 DVKGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYVACVHPVLVGDAILKLYNAGVDEI 260
>gnl|CDD|206754 cd06223, PRTases_typeI, Phosphoribosyl transferase (PRT)-type I
domain. Phosphoribosyl transferase (PRT) domain. The
type I PRTases are identified by a conserved PRPP
binding motif which features two adjacent acidic
residues surrounded by one or more hydrophobic residue.
PRTases catalyze the displacement of the
alpha-1'-pyrophosphate of
5-phosphoribosyl-alpha1-pyrpphosphate (PRPP) by a
nitrogen-containing nucleophile. The reaction products
are an alpha-1 substituted ribose-5'-phosphate and a
free pyrophosphate (PP). PRPP, an activated form of
ribose-5-phosphate, is a key metabolite connecting
nucleotide synthesis and salvage pathways. The type I
PRTase family includes a range of diverse phosphoribosyl
transferase enzymes and regulatory proteins of the
nucleotide synthesis and salvage pathways, including
adenine phosphoribosyltransferase EC:2.4.2.7.,
hypoxanthine-guanine-xanthine phosphoribosyltransferase,
hypoxanthine phosphoribosyltransferase EC:2.4.2.8.,
ribose-phosphate pyrophosphokinase EC:2.7.6.1.,
amidophosphoribosyltransferase EC:2.4.2.14., orotate
phosphoribosyltransferase EC:2.4.2.10., uracil
phosphoribosyltransferase EC:2.4.2.9., and
xanthine-guanine phosphoribosyltransferase EC:2.4.2.22.
Length = 130
Score = 47.0 bits (112), Expect = 3e-08
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 17 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE 76
+ + GDV G+ ++VDD++ + +AA E+LK+ GA + V A
Sbjct: 62 ELPLGGDVKGKRVLLVDDVIATGGTLLAAIELLKEAGAKVVGVAVLLDKPEGGA--RELA 119
Query: 77 SPIDEV 82
SP D V
Sbjct: 120 SPGDPV 125
>gnl|CDD|180714 PRK06827, PRK06827, phosphoribosylpyrophosphate synthetase;
Provisional.
Length = 382
Score = 45.7 bits (109), Expect = 2e-07
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGL 65
DV G+ ++VDDM+ S + AA+ LK RGA KI V AT G
Sbjct: 260 RDVEGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGF 303
>gnl|CDD|235960 PRK07199, PRK07199, phosphoribosylpyrophosphate synthetase;
Provisional.
Length = 301
Score = 35.7 bits (83), Expect = 0.001
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 26 GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDEV 82
GR ++VDD+V + + AA L+ GA + H L + DA + + I V
Sbjct: 211 GRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCVVVHALFAGDAYSALAAAGIARV 267
>gnl|CDD|177934 PLN02297, PLN02297, ribose-phosphate pyrophosphokinase.
Length = 326
Score = 33.1 bits (76), Expect = 0.008
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 64
G+ GR ++VDD+V + + +VL GA K+ THG
Sbjct: 226 GNPAGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHG 268
>gnl|CDD|234653 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.
Length = 209
Score = 30.8 bits (71), Expect = 0.045
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61
D+ R I+VD M+ S +AA ++LK RGA I VL
Sbjct: 121 DIDERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLC 159
>gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta;
Validated.
Length = 327
Score = 28.9 bits (65), Expect = 0.21
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 31 MVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDE 81
M ++M D F+ EV + +GAYK+ T GLL P + ++PI E
Sbjct: 14 MQEEMERDPKVFLMGEEVGEYQGAYKV----TQGLLEQFGPKRVIDTPITE 60
>gnl|CDD|215757 pfam00156, Pribosyltran, Phosphoribosyl transferase domain. This
family includes a range of diverse phosphoribosyl
transferase enzymes. This family includes: Adenine
phosphoribosyltransferase EC:2.4.2.7.
Hypoxanthine-guanine-xanthine phosphoribosyltransferase.
Hypoxanthine phosphoribosyltransferase EC:2.4.2.8.
Ribose-phosphate pyrophosphokinase i EC:2.7.6.1.
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate
phosphoribosyltransferase EC:2.4.2.10. Uracil
phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine
phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis,
At the very N-terminus of this domain is the P-Loop
NTPase domain.
Length = 123
Score = 28.5 bits (64), Expect = 0.27
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 4 DVGVPQHPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATH 63
+ + + G+ ++VDD++D + AA E+LK GA + V
Sbjct: 64 SSIKSRGGESVTLLSRLPELLKGKRVLIVDDVLDTGGTLRAAVELLKKAGAKVVGVAVLV 123
>gnl|CDD|181675 PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase;
Provisional.
Length = 181
Score = 27.9 bits (63), Expect = 0.41
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 13 KEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIY--VLA 61
K KP S+ G R ++VDD++D+ H+ A + + GA ++Y VL
Sbjct: 88 KVKPRESLKG----RTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLV 134
>gnl|CDD|223707 COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase
[Nucleotide transport and metabolism].
Length = 178
Score = 27.5 bits (62), Expect = 0.68
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGA 54
D+ GR ++V+D++D + ++LK+RGA
Sbjct: 90 DIKGRDVLIVEDIIDSGLTLSKVRDLLKERGA 121
>gnl|CDD|215368 PLN02683, PLN02683, pyruvate dehydrogenase E1 component subunit
beta.
Length = 356
Score = 27.5 bits (61), Expect = 0.69
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 33 DDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDE 81
++M D F+ EV + +GAYKI T GLL P + ++PI E
Sbjct: 39 EEMSADPKVFIMGEEVGEYQGAYKI----TKGLLQKYGPDRVLDTPITE 83
>gnl|CDD|238748 cd01471, vWA_micronemal_protein, Micronemal proteins: The
Toxoplasma lytic cycle begins when the parasite actively
invades a target cell. In association with invasion, T.
gondii sequentially discharges three sets of secretory
organelles beginning with the micronemes, which contain
adhesive proteins involved in parasite attachment to a
host cell. Deployed as protein complexes, several
micronemal proteins possess vertebrate-derived adhesive
sequences that function in binding receptors. The VWA
domain likely mediates the protein-protein interactions
of these with their interacting partners.
Length = 186
Score = 27.0 bits (60), Expect = 0.95
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 28 VAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61
V IM D + D + A L++RG I VL
Sbjct: 112 VIIMTDGIPDSKFRTLKEARKLRERGV-IIAVLG 144
>gnl|CDD|224837 COG1926, COG1926, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 220
Score = 26.9 bits (60), Expect = 0.98
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61
+ GR I+VDD + + AA L+ +G +I +
Sbjct: 121 SLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAV 159
>gnl|CDD|130163 TIGR01091, upp, uracil phosphoribosyltransferase. A fairly deep
split in phylogenetic and UPGMA trees separates this
mostly prokaryotic set of uracil
phosphoribosyltransferases from a mostly eukaryotic set
that includes uracil phosphoribosyltransferase, uridine
kinases, and other, uncharacterized proteins [Purines,
pyrimidines, nucleosides, and nucleotides, Salvage of
nucleosides and nucleotides].
Length = 207
Score = 26.8 bits (60), Expect = 1.1
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61
D+ R I++D M+ + +AA ++LK RGA KI VL+
Sbjct: 119 DIDERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLS 157
>gnl|CDD|223970 COG1040, ComFC, Predicted amidophosphoribosyltransferases [General
function prediction only].
Length = 225
Score = 27.0 bits (60), Expect = 1.1
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Query: 36 VDDVH----SFVAAAEVLKDRGAYKIYVLA 61
VDDV+ + AA++L++ GA +++VL
Sbjct: 190 VDDVYTTGATLKEAAKLLREAGAKRVFVLT 219
>gnl|CDD|109900 pfam00862, Sucrose_synth, Sucrose synthase. Sucrose synthases
catalyze the synthesis of sucrose from UDP-glucose and
fructose. This family includes the bulk of the sucrose
synthase protein. However the carboxyl terminal region
of the sucrose synthases belongs to the glycosyl
transferase family pfam00534.
Length = 550
Score = 26.8 bits (59), Expect = 1.2
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 14 EKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVL--KDRGAYKIYVLATHGLLSSDAP 71
E P S + GR+ ++ + ++ H + A A VL D G +Y+L L S+
Sbjct: 255 EAPDPSTLETFLGRIPMVFNVVILSPHGYFAQANVLGYPDTGGQVVYILDQVRALESEML 314
Query: 72 LLIEESPIDEVPR 84
+ I++ +D PR
Sbjct: 315 VRIKQQGLDITPR 327
>gnl|CDD|215132 PLN02238, PLN02238, hypoxanthine phosphoribosyltransferase.
Length = 189
Score = 26.5 bits (59), Expect = 1.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61
DV G+ ++V+D+VD ++ A L+ +GA + V A
Sbjct: 94 DVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCA 132
>gnl|CDD|235873 PRK06846, PRK06846, putative deaminase; Validated.
Length = 410
Score = 26.1 bits (58), Expect = 2.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 44 AAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEE 76
AA E KD Y+I HGLL S++ L+ E
Sbjct: 151 AALERYKDGFTYEIVAFPQHGLLRSNSEPLMRE 183
>gnl|CDD|180643 PRK06645, PRK06645, DNA polymerase III subunits gamma and tau;
Validated.
Length = 507
Score = 26.4 bits (58), Expect = 2.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 36 VDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDA--PLL--IEESP 78
VDD+ + +AE +G +KI+++ +LS A LL +EE P
Sbjct: 110 VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP 156
>gnl|CDD|225145 COG2236, COG2236, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 192
Score = 25.8 bits (57), Expect = 2.3
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 4 DVGVPQHPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDR 52
+ AK K PI++ G +V I VDD+VD + A E LK
Sbjct: 66 ETAERDGEAKVKYPITIDPLSGKKVLI-VDDIVDTGETLELALEELKKL 113
>gnl|CDD|227849 COG5562, COG5562, Phage envelope protein [General function
prediction only].
Length = 137
Score = 25.1 bits (55), Expect = 3.8
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 38 DVHSFVAAAEVLKDRGAYKIYVLAT---HGLLSSDAPLLIEESP 78
DV+ F +E+ + G + IY LAT + +SD +LI+
Sbjct: 20 DVNFFPFLSELKRHNGVHYIYYLATGNQSIVTTSDGVILIKGVK 63
>gnl|CDD|217434 pfam03224, V-ATPase_H_N, V-ATPase subunit H. The yeast
Saccharomyces cerevisiae vacuolar H+-ATPase (V-ATPase)
is a multisubunit complex responsible for acidifying
organelles. It functions as an ATP dependent proton pump
that transports protons across a lipid bilayer. This
domain corresponds to the N terminal domain of the H
subunit of V-ATPase. The N-terminal domain is required
for the activation of the complex whereas the C-terminal
domain is required for coupling ATP hydrolysis to proton
translocation.
Length = 312
Score = 24.9 bits (55), Expect = 5.1
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 31 MVDDMVDDVHSFVAAAEVLKDRGAYKIY 58
++DD++ D S L K Y
Sbjct: 80 LIDDLLSDDPSRAQLFLELSKLEDPKPY 107
>gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 367
Score = 25.2 bits (55), Expect = 5.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 36 VDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDA 70
VDD+ + + + G YKIY++ +LSS A
Sbjct: 90 VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAA 124
>gnl|CDD|193560 cd08012, M20_ArgE-related, M20 Peptidases with simlarity to
acetylornithine deacetylases. Peptidase M20 family,
acetylornithine deacetylase (ArgE, Acetylornithinase,
AO, N2-acetyl-L-ornithine amidohydrolase, EC
3.5.1.16)-related subfamily. Proteins in this subfamily
have not yet been characterized, but have been predicted
to have deacetylase activity. ArgE catalyzes the
conversion of N-acetylornithine to ornithine, which can
then be incorporated into the urea cycle for the final
stage of arginine synthesis. The substrate specificity
of ArgE is quite broad; several alpha-N-acyl-L-amino
acids can be hydrolyzed, including
alpha-N-acetylmethionine and alpha-N-formylmethionine.
ArgE shares significant sequence homology and
biochemical features, and possibly a common origin, with
glutamate carboxypeptidase (CPG2) and
succinyl-diaminopimelate desuccinylase (DapE), and
aminoacylase I (ACY1), having all metal ligand binding
residues conserved.
Length = 423
Score = 25.1 bits (55), Expect = 5.6
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 32 VDDMVDDVHSFV----AAAEVLKDRGAYKIYVLATHGL 65
V ++ + +V A E L RG YVL G
Sbjct: 288 VAEVQKKLEKYVADINANIERLPTRGPVSKYVLPDEGG 325
>gnl|CDD|223113 COG0035, Upp, Uracil phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 210
Score = 24.8 bits (55), Expect = 6.2
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRG-AYKIYVLA 61
D+ R I++D M+ S +AA ++LK RG I V++
Sbjct: 121 DIDERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVS 160
>gnl|CDD|236573 PRK09567, nirA, ferredoxin-nitrite reductase; Reviewed.
Length = 593
Score = 25.0 bits (55), Expect = 6.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 18 ISVVGDVGGRVAIMVDDMVDDVHSFV 43
I +G +G +VA+ D V+ H V
Sbjct: 500 IGDIGLIGAKVAVSEGDTVEGYHIVV 525
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 24.7 bits (54), Expect = 6.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 36 VDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDA 70
VDD+ + + + G YKIY++ +LS A
Sbjct: 103 VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAA 137
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 24.5 bits (54), Expect = 7.3
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 31 MVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPIDE 81
M ++M D FV EV + +GAYK+ T GLL + ++PI E
Sbjct: 152 MAEEMRRDEDVFVMGEEVAEYQGAYKV----TQGLLQEFGARRVIDTPITE 198
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 24.7 bits (54), Expect = 8.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 36 VDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDA--PLL--IEESP 78
VDD+ + L R YKI+++ +LS++A LL +EE P
Sbjct: 101 VDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPP 147
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.137 0.391
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,410,726
Number of extensions: 368919
Number of successful extensions: 456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 57
Length of query: 84
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 32
Effective length of database: 8,631,194
Effective search space: 276198208
Effective search space used: 276198208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)