RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15570
(84 letters)
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2;
phosphorylation, nucleotide biosynthesis, transferase;
2.55A {Homo sapiens} PDB: 2c4k_A*
Length = 379
Score = 113 bits (284), Expect = 4e-32
Identities = 57/82 (69%), Positives = 69/82 (84%)
Query: 1 MEMDVGVPQHPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVL 60
+ + +P KEKPPI+VVGDVGGR+AI+VDD++DDV SF+AAAE LK+RGAYKI+V+
Sbjct: 247 IHPSLEIPMLIPKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVM 306
Query: 61 ATHGLLSSDAPLLIEESPIDEV 82
ATHGLLSSDAP IEES IDEV
Sbjct: 307 ATHGLLSSDAPRRIEESAIDEV 328
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta
structure, domain duplication, phosphoribosyltransferase
type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis}
SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Length = 317
Score = 81.1 bits (201), Expect = 3e-20
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 79
+VG++ G+ AI++DD++D + AA L + GA ++Y TH +LS A I S I
Sbjct: 211 IVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVLSGPAVERINNSTI 270
Query: 80 DEV 82
E+
Sbjct: 271 KEL 273
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis,
transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A
2h06_A 2h07_A 2h08_A
Length = 326
Score = 79.9 bits (198), Expect = 7e-20
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 79
+VGDV RVAI+VDDM D + AA+ L GA ++Y + THG+ S A I +
Sbjct: 207 LVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACF 266
Query: 80 DEV 82
+ V
Sbjct: 267 EAV 269
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle
structural genomics center for infectious disease,
magnesium, metal binding; HET: AMP; 2.30A {Burkholderia
pseudomallei}
Length = 319
Score = 78.4 bits (194), Expect = 2e-19
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 79
++G+V GR +++DDMVD + AA+VLK+RGA +++ ATH +LS A I S +
Sbjct: 210 IIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAADRIAASAL 269
Query: 80 DEV 82
DE+
Sbjct: 270 DEL 272
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase,
transferase; 2.65A {Methanocaldococcus jannaschii} SCOP:
c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Length = 284
Score = 78.0 bits (193), Expect = 3e-19
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 79
D R +VDD++ + A ++LK++GA KI H +L DA + + +
Sbjct: 199 KTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAACVHPVLIGDALNKLYSAGV 258
Query: 80 DEV 82
+EV
Sbjct: 259 EEV 261
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP
analog binding, ATP-binding, metal-binding, nucleotide
biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium}
PDB: 3lpn_A* 3nag_A* 3mbi_A*
Length = 286
Score = 72.6 bits (179), Expect = 3e-17
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 20 VVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESPI 79
DV G+ ++VDD++ + ++ +L+++GA KIYV A HGL + + I ++
Sbjct: 197 PNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLFVNGSENKILQN-A 255
Query: 80 DEV 82
DE+
Sbjct: 256 DEI 258
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Length = 208
Score = 35.0 bits (80), Expect = 0.001
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPL 72
GR ++VDD V S AA V+ G ++ V + L
Sbjct: 117 ARKGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAVPVASPEAVERL 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.062
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 15/56 (26%)
Query: 28 VAIMVDDMVDDVHSFVAAAEVLKDRGAYKI-YVLATHGL-----LSSDAPLL-IEE 76
A+ + AA E LK +G A H L L+S A ++ IE
Sbjct: 1734 PALTL-------ME-KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES 1781
Score = 30.0 bits (67), Expect = 0.074
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 37 DDVHSFVAA------AEVLKDRGAYKIYVLATH 63
+D+H+ A ++K + K Y+ A
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARI 131
Score = 26.6 bits (58), Expect = 1.1
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 17 PISVV-GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIE 75
P+++ G + ++V + A L+++ KI T G + D P
Sbjct: 8 PLTLSHGSL--EHVLLVP------TASFFIASQLQEQFN-KILPEPTEGFAADDEP---- 54
Query: 76 ESPID 80
+P +
Sbjct: 55 TTPAE 59
Score = 25.8 bits (56), Expect = 2.3
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 38 DVHSFVAAAEVLKDRGAY 55
DV S + EV+ RG
Sbjct: 1775 DVMSIESLVEVVFYRGMT 1792
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A
{Bacillus caldolyticus} SCOP: c.61.1.1
Length = 209
Score = 29.5 bits (66), Expect = 0.079
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVL 60
DV R I+VD M+ S VAA + LK RGA I +
Sbjct: 121 DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFM 158
>2xbu_A Hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage, FLIP pepti; HET:
5GP; 1.80A {Saccharomyces cerevisiae} PDB: 2jkz_A*
2jky_A*
Length = 221
Score = 28.2 bits (62), Expect = 0.29
Identities = 11/58 (18%), Positives = 22/58 (37%)
Query: 4 DVGVPQHPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61
+VGV + D+ G+ ++VD++ D + A L+ A +
Sbjct: 81 EVGVKVSRTQWIDYEQCKLDLVGKNVLIVDEVDDTRTTLHYALSELEKDAAEQAKAKG 138
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 26.1 bits (57), Expect = 1.0
Identities = 10/42 (23%), Positives = 12/42 (28%), Gaps = 5/42 (11%)
Query: 48 VLKDRGAYKIYVLATHGLLSSDAPLLIEESP-----IDEVPR 84
G Y+ V S L + ES ID P
Sbjct: 83 KDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPS 124
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2,
protein structure initiative, PSI, center for eukaryotic
structural genomics, CESG; 2.20A {Mus musculus} PDB:
3hlt_A
Length = 259
Score = 25.6 bits (57), Expect = 2.2
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 41 SFVAAAEVLKDRGAYKIYVLATHGLLSSDAPLLIEESP 78
S AA +++ + + +L L + + + P
Sbjct: 75 SLTAARNLIEQKQVRPMLLLDDRAL--PEFTGVQTQDP 110
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal
transduction, multi-domai protein, transferase; 2.60A
{Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3
PDB: 2ch4_A* 3ur1_A
Length = 379
Score = 25.1 bits (56), Expect = 2.9
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 6 GVPQHPAKEKPPISVVGDVGGRVAIMVDDMVD 37
+ E+ +V + I+VDD++
Sbjct: 308 QIEHKEELEEMEAVIVRVGNRKYGIVVDDLLG 339
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 25.1 bits (55), Expect = 3.1
Identities = 5/33 (15%), Positives = 8/33 (24%), Gaps = 5/33 (15%)
Query: 27 RVAIMVDDMVDDVHSFVA-----AAEVLKDRGA 54
RV D + + L+ G
Sbjct: 320 RVGYYETDNYTMPSPAMRRALIETKQRLEAAGH 352
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase,
transferase; HET: 3AT; 2.15A {Bos taurus} SCOP:
a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Length = 514
Score = 24.4 bits (52), Expect = 6.1
Identities = 8/53 (15%), Positives = 16/53 (30%)
Query: 16 PPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSS 68
++ G RV + +V ++ +F +K G L
Sbjct: 194 DIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGG 246
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 2.50A
{Pyrococcus horikoshii} SCOP: c.61.1.1
Length = 153
Score = 23.3 bits (51), Expect = 10.0
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 22 GDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYV 59
GD+ + ++VDD+ D + E +K GA +I +
Sbjct: 79 GDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKI 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.391
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,323,993
Number of extensions: 73376
Number of successful extensions: 280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 39
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)