RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15570
(84 letters)
>d2c4ka2 c.61.1.2 (A:167-350) PRPP synthetase-associated protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 55.1 bits (132), Expect = 1e-11
Identities = 57/82 (69%), Positives = 72/82 (87%)
Query: 1 MEMDVGVPQHPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVL 60
+ + +P AKEKPPI+VVGDVGGR+AI+VDD++DDV SFVAAAE+LK+RGAYKIYV+
Sbjct: 58 VHPGLELPLMMAKEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVM 117
Query: 61 ATHGLLSSDAPLLIEESPIDEV 82
ATHG+LS++AP LIEES +DEV
Sbjct: 118 ATHGILSAEAPRLIEESSVDEV 139
>d1dkua2 c.61.1.2 (A:167-315) Phosphoribosylpyrophosphate synthetase
{Bacillus subtilis [TaxId: 1423]}
Length = 149
Score = 48.8 bits (116), Expect = 2e-09
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 9 QHPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSS 68
+ +++VG++ G+ AI++DD++D + AA L + GA ++Y TH +LS
Sbjct: 33 RPRPNVAEVMNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVLSG 92
Query: 69 DAPLLIEESPIDEV 82
A I S I E+
Sbjct: 93 PAVERINNSTIKEL 106
>d1u9ya2 c.61.1.2 (A:156-284) Phosphoribosylpyrophosphate synthetase
{Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 129
Score = 38.0 bits (88), Expect = 1e-05
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 9 QHPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLLSS 68
+ E D R +VDD++ + A ++LK++GA KI H +L
Sbjct: 33 RLSPTEIQIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAACVHPVLIG 92
Query: 69 DAPLLIEESPIDEV 82
DA + + ++EV
Sbjct: 93 DALNKLYSAGVEEV 106
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
[TaxId: 1394]}
Length = 208
Score = 32.6 bits (74), Expect = 0.003
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 18 ISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62
+ + DV R I+VD M+ S VAA + LK RGA I +
Sbjct: 115 VKLPSDVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCL 159
>d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426
(TTHA1462) {Thermus thermophilus [TaxId: 274]}
Length = 208
Score = 30.9 bits (69), Expect = 0.009
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 12 AKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 64
A+ + GR ++VDD V S AA V+ G ++ V
Sbjct: 106 AERYRRVRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAVPVA 158
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus
[TaxId: 274]}
Length = 208
Score = 30.7 bits (69), Expect = 0.011
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 5 VGVPQHPAKEKP---PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVL 60
+G+ + P P I + D+ R A ++D M+ S A +LK+RGA + ++
Sbjct: 99 IGLYRDPESLNPVQYYIKLPPDIAERRAFLLDPMLATGGSASLALSLLKERGATGVKLM 157
>d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase
TTHA1613 {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 28.9 bits (64), Expect = 0.049
Identities = 7/45 (15%), Positives = 18/45 (40%)
Query: 17 PISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61
+ + ++V D+V + A +++ G + + LA
Sbjct: 110 DRRFAEKLLNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVARLA 154
>d1z7ga1 c.61.1.1 (A:4-217) Hypoxanthine-guanine PRTase (HGPRTase)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 214
Score = 26.9 bits (59), Expect = 0.25
Identities = 5/62 (8%), Positives = 22/62 (35%)
Query: 1 MEMDVGVPQHPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVL 60
++ + + + G+ ++V+D++D + +++ + V
Sbjct: 98 LKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVA 157
Query: 61 AT 62
+
Sbjct: 158 SL 159
>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase)
{Plasmodium falciparum [TaxId: 5833]}
Length = 228
Score = 26.8 bits (59), Expect = 0.30
Identities = 9/52 (17%), Positives = 21/52 (40%)
Query: 9 QHPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVL 60
Q + + + G+ ++V+D++D + V E LK + +
Sbjct: 119 QSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIA 170
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 26.3 bits (57), Expect = 0.48
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 12 AKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG-LLSSDA 70
+ I V DV G+ + + +++ + + LK+ G + H +
Sbjct: 326 ELKDSKI--VRDVRGKGLLCAIEFKNELVNVLDICLKLKENG---LITRDVHDKTIRLTP 380
Query: 71 PLLIEESPIDEV 82
PL I + +DE
Sbjct: 381 PLCITKEQLDEC 392
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides
fragilis [TaxId: 817]}
Length = 230
Score = 25.8 bits (55), Expect = 0.60
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 64
+ A ++D ++D + V A + H
Sbjct: 41 INNHQAALLDTPINDAQTETLVNWVADSLHAKVTTFIPNHW 81
>d1tc1a_ c.61.1.1 (A:) Hypoxanthine PRTase {Trypanosoma cruzi
[TaxId: 5693]}
Length = 184
Score = 25.7 bits (56), Expect = 0.72
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 27 RVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61
++V+D+VD + + R + +
Sbjct: 101 HHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVV 135
>d1dqna_ c.61.1.1 (A:) Guanine PRTase {Giardia lamblia [TaxId:
5741]}
Length = 230
Score = 25.7 bits (56), Expect = 0.79
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61
R +++D+ VD H+ + E +K +V
Sbjct: 115 LKEKREVVLIDEYVDSGHTIFSIQEQIKHAKICSCFVKD 153
>d1j7ja_ c.61.1.1 (A:) Hypoxanthine PRTase {Salmonella typhimurium
[TaxId: 90371]}
Length = 172
Score = 25.3 bits (55), Expect = 0.95
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 26 GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62
G+ ++V+D++D ++ E+L R + +
Sbjct: 90 GKDVLIVEDIIDSGNTLSKVREILGLREPKSLAICTL 126
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima
[TaxId: 2336]}
Length = 210
Score = 23.8 bits (51), Expect = 2.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 26 GRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61
+ ++D M+ S + A E+LK+ GA KI ++A
Sbjct: 125 DKEVFLLDPMLATGVSSIKAIEILKENGAKKITLVA 160
>d1yfza1 c.61.1.1 (A:3-180) Xanthine-guanine PRTase (XPRTase)
{Thermoanaerobacter tengcongensis [TaxId: 119072]}
Length = 178
Score = 23.8 bits (51), Expect = 2.9
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61
D+ G+ ++V+D++D + E L R + +
Sbjct: 89 DIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICT 127
>d1a3ca_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Bacillus
subtilis [TaxId: 1423]}
Length = 178
Score = 23.5 bits (50), Expect = 3.4
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62
+ + I+VDD++ + A + L D G LA
Sbjct: 94 ITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAV 132
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus
[TaxId: 1396]}
Length = 221
Score = 23.7 bits (50), Expect = 3.4
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 24 VGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHG 64
+ ++VD DD + V K V+ TH
Sbjct: 41 NTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHA 81
>d1pzma_ c.61.1.1 (A:) Hypoxanthine-guanine-xanthine PRTase
{Leishmania tarentolae [TaxId: 5689]}
Length = 183
Score = 23.0 bits (49), Expect = 5.1
Identities = 6/39 (15%), Positives = 15/39 (38%)
Query: 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLA 61
V R ++V+D+VD + + + + +
Sbjct: 96 SVENRHIMLVEDIVDSAITLQYLMRFMLAKKPASLKTVV 134
>d2b5dx1 a.8.3.3 (X:415-528) Alpha-amylase AmyC {Thermotoga
maritima [TaxId: 2336]}
Length = 114
Score = 22.9 bits (49), Expect = 5.6
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 31 MVDDMVDDVHSFVAAAEVLKDRGAYKIYVLATHGLL--SSDAPLLIE 75
M++ M+D + +++ L +R + + L SSD ++
Sbjct: 12 MIERMIDLSKKYYNSSDPLVERVLNQ---MLRELFLAQSSDWAFIMT 55
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 23.0 bits (49), Expect = 5.7
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 15 KPPISVVGDVGG------RVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVL 60
+ P++V GDV G + + D + F+ DRG Y + +
Sbjct: 44 RCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGD---YVDRGYYSVETV 92
>d1hgxa_ c.61.1.1 (A:) Hypoxanthine-guanine-xanthine PRTase
{Tritrichomonas foetus [TaxId: 5724]}
Length = 173
Score = 22.7 bits (48), Expect = 8.5
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 23 DVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYV 59
++ GR ++V+D++D + L+ R + V
Sbjct: 86 NIEGRHVLVVEDIIDTGLTMYQLLNNLQMRKPASLKV 122
>d1w30a_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 182
Score = 22.3 bits (47), Expect = 8.9
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 8 PQHPAKEKPPISVVGDVGGRVAIMVDDMVDDVHSFVAAAEVLKDRGAYKIYVLAT 62
+ P G + + I+VDD++ S +A + L+D G + LA
Sbjct: 83 IKPPRPLASTSIPAGGIDDALVILVDDVLYSGRSVRSALDALRDVGRPRAVQLAV 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.391
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 303,007
Number of extensions: 11726
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 42
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)