BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15572
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JE8|A Chain A, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
pdb|2JE8|B Chain B, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
Length = 848
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 30/128 (23%)
Query: 9 ATVPGGIYSDLRRGNILKEDVYYRDNDLKYRWVSKTGWTYSTEFEEEDVYYRDNDLKYRW 68
ATVPG ++ DL +L + +Y N+ K +W
Sbjct: 30 ATVPGTVHQDLISHELLP-----------------------------NPFYGMNEKKIQW 60
Query: 69 VSKTGWTYSTEFEVTDKNFLALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVK 128
V W Y T F V+++ L L+F G+DT A +YLN L K DNMFV Y VK
Sbjct: 61 VENEDWEYRTSFIVSEEQ-LNRDGIQLIFEGLDTYADVYLNGSLLLKADNMFVGYTLPVK 119
Query: 129 DKLQENES 136
L++ E+
Sbjct: 120 SVLRKGEN 127
>pdb|2VJX|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VJX|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VOT|A Chain A, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VOT|B Chain B, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VQT|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQT|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VR4|A Chain A, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
pdb|2VR4|B Chain B, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
Length = 846
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 30/128 (23%)
Query: 9 ATVPGGIYSDLRRGNILKEDVYYRDNDLKYRWVSKTGWTYSTEFEEEDVYYRDNDLKYRW 68
ATVPG ++ DL +L + +Y N+ K +W
Sbjct: 28 ATVPGTVHQDLISHELLP-----------------------------NPFYGMNEKKIQW 58
Query: 69 VSKTGWTYSTEFEVTDKNFLALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVK 128
V W Y T F V+++ L L+F G+DT A +YLN L K DNMFV Y VK
Sbjct: 59 VENEDWEYRTSFIVSEEQ-LNRDGIQLIFEGLDTYADVYLNGSLLLKADNMFVGYTLPVK 117
Query: 129 DKLQENES 136
L++ E+
Sbjct: 118 SVLRKGEN 125
>pdb|2VQU|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQU|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
Length = 846
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 30/128 (23%)
Query: 9 ATVPGGIYSDLRRGNILKEDVYYRDNDLKYRWVSKTGWTYSTEFEEEDVYYRDNDLKYRW 68
ATVPG ++ DL +L + +Y N+ K +W
Sbjct: 28 ATVPGTVHQDLISHELLP-----------------------------NPFYGMNEKKIQW 58
Query: 69 VSKTGWTYSTEFEVTDKNFLALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVK 128
V W Y T F V+++ L L+F G+DT A +YLN L K DNMFV Y VK
Sbjct: 59 VENEDWEYRTSFIVSEEQ-LNRDGIQLIFEGLDTYADVYLNGSLLLKADNMFVGYTLPVK 117
Query: 129 DKLQENES 136
L++ E+
Sbjct: 118 SVLRKGEN 125
>pdb|2WBK|A Chain A, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
pdb|2WBK|B Chain B, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
Length = 847
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 30/128 (23%)
Query: 9 ATVPGGIYSDLRRGNILKEDVYYRDNDLKYRWVSKTGWTYSTEFEEEDVYYRDNDLKYRW 68
ATVPG ++ DL +L + +Y N+ K +W
Sbjct: 28 ATVPGTVHQDLISHELLP-----------------------------NPFYGMNEKKIQW 58
Query: 69 VSKTGWTYSTEFEVTDKNFLALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVK 128
V W Y T F V+++ L L+F G+DT A +YLN L K DNMFV Y VK
Sbjct: 59 VENEDWEYRTSFIVSEEQ-LNRDGIQLIFEGLDTYADVYLNGSLLLKADNMFVGYTLPVK 117
Query: 129 DKLQENES 136
L++ E+
Sbjct: 118 SVLRKGEN 125
>pdb|3CMG|A Chain A, Crystal Structure Of Putative Beta-Galactosidase From
Bacteroides Fragilis
Length = 667
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 94 FLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVKDKLQENESKQNL 140
FL F GV++IA +++N K +G+ + + F++ D ++ E L
Sbjct: 69 FLRFDGVNSIADVFINRKHIGEHRGGYGAFIFEITDLVKYGEKNSVL 115
>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides
Vulgatus
Length = 801
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 95 LVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVKDKLQENESK 137
++F GV + +++N LGK N ++ + +D+ LQE +++
Sbjct: 87 ILFEGVYLNSEVWINGHWLGKRPNGYISFVYDLTPYLQEGKNQ 129
>pdb|3CGL|A Chain A, Crystal Structure And Raman Studies Of Dsfp483, A Cyan
Fluorescent Protein From Discosoma Striata
pdb|3CGL|B Chain B, Crystal Structure And Raman Studies Of Dsfp483, A Cyan
Fluorescent Protein From Discosoma Striata
pdb|3CGL|C Chain C, Crystal Structure And Raman Studies Of Dsfp483, A Cyan
Fluorescent Protein From Discosoma Striata
pdb|3CGL|D Chain D, Crystal Structure And Raman Studies Of Dsfp483, A Cyan
Fluorescent Protein From Discosoma Striata
pdb|3CGL|E Chain E, Crystal Structure And Raman Studies Of Dsfp483, A Cyan
Fluorescent Protein From Discosoma Striata
pdb|3CGL|F Chain F, Crystal Structure And Raman Studies Of Dsfp483, A Cyan
Fluorescent Protein From Discosoma Striata
Length = 241
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 44 TGWTYSTEFEEEDVYYRDN----DLKYRWVSKTGWTYSTEFEV---TDKNFLALPNQFLV 96
TGW STE +Y RD D+ + + G Y+ + + K L +P
Sbjct: 150 TGWEPSTE----RLYPRDGVLIGDIHHALTVEGGGHYACDIKTVYRAKKAALKMPG---- 201
Query: 97 FHGVDTIATIYLNDKELGKTD 117
+H VDT I+ NDKE K +
Sbjct: 202 YHYVDTKLVIWNNDKEFMKVE 222
>pdb|4EZI|A Chain A, Crystal Structure Of A Hypothetical Protein (Lpg1103) From
Legionella Pneumophila Subsp. Pneumophila Str.
Philadelphia 1 At 1.15 A Resolution
Length = 377
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 41 VSKTGWTYSTEFEEEDVYYRDNDLKYRWVSKTGWTYSTEFEVTDKNFLALPNQFLVFHG- 99
V + + T FE DV R+N+ Y +++ G S + ++L L + L H
Sbjct: 74 VGIISYQHGTRFERNDVPSRNNEKNYIYLAAYG--NSAGYXTVXPDYLGLGDNELTLHPY 131
Query: 100 --VDTIATIYLNDKELGKTDNMFVRYRFDVKDKL 131
+T+A+ ++ L + R + + DKL
Sbjct: 132 VQAETLASSSID--XLFAAKELANRLHYPISDKL 163
>pdb|1YQ2|A Chain A, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|B Chain B, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|C Chain C, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|D Chain D, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|E Chain E, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|F Chain F, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
Length = 1024
Score = 26.2 bits (56), Expect = 6.7, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 63 DLKYRWVSKTGWTYSTEFEVTDKNFLALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVR 122
D + R+ W ST +T L F GV++ +++N +E+G +
Sbjct: 121 DFRRRFDVPAQWFESTTAALT-----------LRFDGVESRYKVWVNGQEIGVGSGSRLA 169
Query: 123 YRFDVKDKLQ 132
FDV D L+
Sbjct: 170 QEFDVSDALR 179
>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OBA|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
Length = 1032
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 69 VSKTGWTYSTEFEVTDKNFLALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVK 128
V+ TG Y+ FE+ K+ + ++ L F GVD +Y+N + +G FD++
Sbjct: 110 VNPTG-VYARTFELDSKSIESFEHR-LRFEGVDNCYELYVNGQYVGFNKGSRNGAEFDIQ 167
Query: 129 DKLQENES 136
+ E E+
Sbjct: 168 KYVSEGEN 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,604,559
Number of Sequences: 62578
Number of extensions: 199548
Number of successful extensions: 439
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 31
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)