Query psy15572
Match_columns 144
No_of_seqs 147 out of 1368
Neff 5.6
Searched_HMMs 46136
Date Sat Aug 17 00:44:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2230|consensus 99.9 3.7E-23 8E-28 185.2 9.5 107 2-139 35-141 (867)
2 PF02837 Glyco_hydro_2_N: Glyc 99.8 2.1E-18 4.6E-23 130.1 7.5 102 4-142 35-137 (167)
3 PRK10340 ebgA cryptic beta-D-g 99.6 3E-15 6.4E-20 142.2 9.2 99 5-142 70-177 (1021)
4 PRK10150 beta-D-glucuronidase; 99.5 3.1E-14 6.8E-19 127.9 8.9 60 81-142 74-134 (604)
5 PRK09525 lacZ beta-D-galactosi 99.5 4.4E-13 9.6E-18 127.6 11.5 102 6-142 82-189 (1027)
6 COG3250 LacZ Beta-galactosidas 99.3 6.3E-12 1.4E-16 117.4 8.3 101 6-140 29-129 (808)
7 KOG2024|consensus 97.0 0.0011 2.3E-08 55.9 4.4 57 76-133 92-150 (297)
8 COG3250 LacZ Beta-galactosidas 96.9 0.0013 2.9E-08 62.2 5.4 56 86-141 94-149 (808)
9 PF08531 Bac_rhamnosid_N: Alph 96.8 0.0031 6.7E-08 48.8 5.4 41 103-143 15-64 (172)
10 PF13364 BetaGal_dom4_5: Beta- 96.2 0.024 5.3E-07 41.0 6.8 44 95-139 55-102 (111)
11 PLN03059 beta-galactosidase; P 91.6 0.51 1.1E-05 45.4 6.4 67 69-135 466-537 (840)
12 PF08308 PEGA: PEGA domain; I 78.2 4.2 9.2E-05 26.3 3.9 17 101-117 10-26 (71)
13 PF04566 RNA_pol_Rpb2_4: RNA p 71.2 4 8.6E-05 26.9 2.3 13 106-118 1-13 (63)
14 PF14683 CBM-like: Polysacchar 70.3 15 0.00033 28.4 5.8 41 101-142 92-150 (167)
15 smart00560 LamGL LamG-like jel 61.5 12 0.00026 27.1 3.5 28 91-118 64-91 (133)
16 PF12222 PNGaseA: Peptide N-ac 60.4 19 0.00041 32.2 5.1 53 91-143 46-113 (427)
17 KOG0496|consensus 51.9 38 0.00082 32.0 5.8 47 93-139 435-484 (649)
18 PF03170 BcsB: Bacterial cellu 49.0 41 0.00089 30.7 5.5 62 80-142 330-407 (605)
19 PRK10824 glutaredoxin-4; Provi 47.3 11 0.00025 27.6 1.4 21 97-117 65-85 (115)
20 PLN03059 beta-galactosidase; P 45.9 29 0.00062 33.8 4.1 70 41-115 579-657 (840)
21 PF03170 BcsB: Bacterial cellu 45.3 45 0.00098 30.4 5.2 41 102-142 63-108 (605)
22 PF13385 Laminin_G_3: Concanav 44.8 28 0.00061 24.0 3.1 25 92-118 89-113 (157)
23 PF14814 UB2H: Bifunctional tr 44.3 36 0.00078 23.2 3.5 37 76-114 43-81 (85)
24 PF06832 BiPBP_C: Penicillin-B 43.7 79 0.0017 21.2 5.1 31 89-119 30-60 (89)
25 PF11824 DUF3344: Protein of u 42.3 61 0.0013 27.0 5.1 44 99-142 69-131 (271)
26 PRK11114 cellulose synthase re 41.5 48 0.001 31.5 4.9 42 101-142 114-161 (756)
27 PF07691 PA14: PA14 domain; I 39.9 81 0.0017 22.3 4.9 28 91-119 60-87 (145)
28 KOG0496|consensus 39.0 73 0.0016 30.2 5.5 64 73-142 557-624 (649)
29 PF12733 Cadherin-like: Cadher 37.2 1.2E+02 0.0026 20.0 5.2 27 90-116 24-50 (88)
30 PF11008 DUF2846: Protein of u 36.7 54 0.0012 23.4 3.6 28 101-128 40-68 (117)
31 COG0278 Glutaredoxin-related p 31.2 26 0.00057 25.7 1.1 21 97-117 66-86 (105)
32 PF13954 PapC_N: PapC N-termin 30.7 53 0.0011 24.4 2.7 16 102-117 32-47 (146)
33 PRK06789 flagellar motor switc 29.6 56 0.0012 22.4 2.5 18 100-117 40-57 (74)
34 PF11824 DUF3344: Protein of u 28.8 1.3E+02 0.0027 25.1 4.9 45 97-141 206-253 (271)
35 PF06439 DUF1080: Domain of Un 28.2 1.1E+02 0.0025 22.4 4.2 31 89-119 126-156 (185)
36 smart00758 PA14 domain in bact 27.9 2.2E+02 0.0048 20.0 6.8 27 91-118 58-84 (136)
37 KOG1752|consensus 27.6 36 0.00078 24.5 1.3 24 94-117 59-82 (104)
38 PF02973 Sialidase: Sialidase, 25.8 2.4E+02 0.0052 22.5 5.8 25 92-116 107-131 (190)
39 cd04013 C2_SynGAP_like C2 doma 24.9 80 0.0017 23.9 2.8 16 101-116 28-43 (146)
40 PRK08158 type III secretion sy 24.7 1.2E+02 0.0025 26.1 4.1 41 94-136 256-301 (303)
41 PF09264 Sial-lect-inser: Vibr 24.4 1.2E+02 0.0025 24.7 3.8 28 91-118 95-122 (198)
42 TIGR00365 monothiol glutaredox 24.4 49 0.0011 22.9 1.5 20 98-117 63-82 (97)
43 cd03581 NTR_Sfrp3_like NTR dom 24.2 1.1E+02 0.0024 22.0 3.4 35 98-135 6-40 (111)
44 PF07550 DUF1533: Protein of u 24.1 2E+02 0.0043 18.5 4.3 12 102-113 7-18 (65)
45 cd00152 PTX Pentraxins are pla 23.6 1.2E+02 0.0026 23.5 3.8 27 91-117 93-119 (201)
46 cd03028 GRX_PICOT_like Glutare 22.8 55 0.0012 22.1 1.5 20 98-117 59-78 (90)
47 PF07908 D-aminoacyl_C: D-amin 22.0 96 0.0021 19.0 2.3 12 104-115 21-32 (48)
48 cd00070 GLECT Galectin/galacto 21.6 1.8E+02 0.0039 20.8 4.1 30 88-117 75-104 (127)
49 smart00561 MBT Present in Dros 21.6 66 0.0014 22.7 1.7 21 89-109 54-74 (96)
50 TIGR02180 GRX_euk Glutaredoxin 21.3 59 0.0013 20.7 1.3 19 98-116 50-68 (84)
51 PF00337 Gal-bind_lectin: Gala 21.2 1.9E+02 0.0042 20.5 4.2 29 88-116 80-108 (133)
52 TIGR02189 GlrX-like_plant Glut 21.2 60 0.0013 22.6 1.4 20 98-117 57-76 (99)
53 COG1886 FliN Flagellar motor s 21.1 82 0.0018 23.6 2.2 27 90-117 95-121 (136)
54 PF11324 DUF3126: Protein of u 20.9 1.9E+02 0.0041 19.3 3.7 38 91-128 16-58 (63)
55 PHA03050 glutaredoxin; Provisi 20.8 66 0.0014 22.9 1.6 21 98-118 65-85 (108)
56 PF14213 DUF4325: Domain of un 20.4 23 0.0005 23.4 -0.8 24 87-110 14-37 (74)
57 smart00159 PTX Pentraxin / C-r 20.3 1.4E+02 0.0031 23.2 3.6 35 91-126 93-127 (206)
58 PF12143 PPO1_KFDV: Protein of 20.2 2.4E+02 0.0053 21.1 4.6 54 89-142 26-112 (130)
59 PRK11200 grxA glutaredoxin 1; 20.2 64 0.0014 21.2 1.3 19 99-117 55-73 (85)
No 1
>KOG2230|consensus
Probab=99.89 E-value=3.7e-23 Score=185.16 Aligned_cols=107 Identities=32% Similarity=0.641 Sum_probs=96.5
Q ss_pred CCCeeEEeecCcHHHHHHHHCCCCCCCCccccCcccccccccCCeEEEEEeccccccccccccccccccccccccceeee
Q psy15572 2 SQTISTEATVPGGIYSDLRRGNILKEDVYYRDNDLKYRWVSKTGWTYSTEFEEEDVYYRDNDLKYRWVSKTGWTYSTEFE 81 (144)
Q Consensus 2 ~~~~~~~a~vPg~v~~~L~~ag~i~~dp~~~~n~~~~~wv~~~~W~y~~~f~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 81 (144)
|++.-.+.+|||+||+||.+.|+|+ |||+|.|.++++||+..+|+|+++|. -|+
T Consensus 35 n~t~~~~g~vpg~i~s~l~~~gii~-~~~~~~n~ln~kwia~d~wtysr~fr-------------------------l~d 88 (867)
T KOG2230|consen 35 NKTVNGTGTVPGDIYSDLYASGIID-NPLFGENHLNLKWIAEDDWTYSRKFR-------------------------LID 88 (867)
T ss_pred CCceecCCCCCchHhHHHHhccccc-CccccccccceeEEeccCccceeeeE-------------------------EEE
Confidence 6777789999999999999999999 99999999999999999999999992 234
Q ss_pred ecccccCCCCcEEEEECccCcEEEEEECCEEeeeecCCeeEEEEeCccccccCCceEE
Q psy15572 82 VTDKNFLALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVKDKLQENESKQN 139 (144)
Q Consensus 82 v~~~~~~~~~~v~LvFeGlDT~A~V~LNG~~Vg~~~nmF~~~~fDIt~~Lk~gn~~~~ 139 (144)
++ +-..++|.+||+||+|+|++||+.|++++|||.+|+++||+.+...|+++.
T Consensus 89 l~-----~~~~~~l~ie~vdtia~v~~n~~~v~~s~n~f~~y~~~vt~ii~~~n~i~~ 141 (867)
T KOG2230|consen 89 LD-----DTVGAFLEIESVDTIATVYVNGQKVLHSRNQFLPYHVNVTDIIAGENDITI 141 (867)
T ss_pred cc-----ccccceEEEeecceeEEEEEccEEEeeccccceeEEEeEEEEecCCcceEE
Confidence 43 446899999999999999999999999999999999999999986676654
No 2
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=99.75 E-value=2.1e-18 Score=130.10 Aligned_cols=102 Identities=25% Similarity=0.350 Sum_probs=82.6
Q ss_pred CeeEEeecCcHHHHHHHHCCCCCCCCccccCcccccccccCCeEEEEEeccccccccccccccccccccccccceeeeec
Q psy15572 4 TISTEATVPGGIYSDLRRGNILKEDVYYRDNDLKYRWVSKTGWTYSTEFEEEDVYYRDNDLKYRWVSKTGWTYSTEFEVT 83 (144)
Q Consensus 4 ~~~~~a~vPg~v~~~L~~ag~i~~dp~~~~n~~~~~wv~~~~W~y~~~f~~~~~~~~~~~~~~~~~~~~~~~y~~~~~v~ 83 (144)
+.|.++.||+.++..++.+ . .|. +.....+.....|||+++| ++|
T Consensus 35 ~~w~~i~VP~~~~~~~~~~---~-~~~---~~~~~~~~~~~~~wYr~~f----------------------------~lp 79 (167)
T PF02837_consen 35 SDWQPISVPGSWEDDLLRA---F-VPE---NGDPELWDYSGYAWYRRTF----------------------------TLP 79 (167)
T ss_dssp TTSEEEEESSEGTCCTSST---B-TTS---TTGCCTSTCCSEEEEEEEE----------------------------EES
T ss_pred CCCeEEeCCCEeecCccce---e-ccc---cccccccccCceEEEEEEE----------------------------EeC
Confidence 4478999999998876544 1 121 2344566667789999999 788
Q ss_pred ccccCCCCcEEEEECccCcEEEEEECCEEeeeecCCeeEEEEeCccccccCC-ceEEEEe
Q psy15572 84 DKNFLALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVKDKLQENE-SKQNLEL 142 (144)
Q Consensus 84 ~~~~~~~~~v~LvFeGlDT~A~V~LNG~~Vg~~~nmF~~~~fDIt~~Lk~gn-~~~~l~~ 142 (144)
++ ..++++.|+|+||++.|+|||||+.||.+.+||.++++|||++|+.|+ |.+.|.+
T Consensus 80 -~~-~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 80 -AD-WKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYTPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp -GG-GTTSEEEEEESEEESEEEEEETTEEEEEEESTTS-EEEECGGGSSSEEEEEEEEEE
T ss_pred -ch-hcCceEEEEeccceEeeEEEeCCeEEeeeCCCcCCeEEeChhhccCCCCEEEEEEE
Confidence 34 368999999999999999999999999999999999999999999876 8877765
No 3
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.59 E-value=3e-15 Score=142.21 Aligned_cols=99 Identities=15% Similarity=0.205 Sum_probs=77.3
Q ss_pred eeEEeecCcHHHH---------HHHHCCCCCCCCccccCcccccccccCCeEEEEEeccccccccccccccccccccccc
Q psy15572 5 ISTEATVPGGIYS---------DLRRGNILKEDVYYRDNDLKYRWVSKTGWTYSTEFEEEDVYYRDNDLKYRWVSKTGWT 75 (144)
Q Consensus 5 ~~~~a~vPg~v~~---------~L~~ag~i~~dp~~~~n~~~~~wv~~~~W~y~~~f~~~~~~~~~~~~~~~~~~~~~~~ 75 (144)
.|-++.|||+-.. ++.-...++ +|+...+ ...+||+++|
T Consensus 70 ~W~~I~VP~~w~~~g~~~~~y~n~~y~~~~~-~P~vp~~--------n~~g~Yrr~F----------------------- 117 (1021)
T PRK10340 70 DWGHITVPAMWQMEGHGKLQYTDEGFPFPID-VPFVPSD--------NPTGAYQRTF----------------------- 117 (1021)
T ss_pred CCcEeecCCChhhcCCCCcccccccccCCCC-CCCCCCc--------CCeEEEEEEE-----------------------
Confidence 3677889998542 222222234 5554432 2358999999
Q ss_pred cceeeeecccccCCCCcEEEEECccCcEEEEEECCEEeeeecCCeeEEEEeCccccccCCceEEEEe
Q psy15572 76 YSTEFEVTDKNFLALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVKDKLQENESKQNLEL 142 (144)
Q Consensus 76 y~~~~~v~~~~~~~~~~v~LvFeGlDT~A~V~LNG~~Vg~~~nmF~~~~fDIt~~Lk~gn~~~~l~~ 142 (144)
++| +. ..+++++|+|+||++.|+|||||++||.|+|+|.+|+||||++|+.|+|.++|.+
T Consensus 118 -----~lp-~~-~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~~pfefDIT~~l~~G~N~LaV~V 177 (1021)
T PRK10340 118 -----TLS-DG-WQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISAMVKTGDNLLCVRV 177 (1021)
T ss_pred -----EeC-cc-cccCcEEEEECccceEEEEEECCEEeccccCCCccEEEEcchhhCCCccEEEEEE
Confidence 888 34 4688999999999999999999999999999999999999999999888888765
No 4
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.52 E-value=3.1e-14 Score=127.91 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=53.1
Q ss_pred eecccccCCCCcEEEEECccCcEEEEEECCEEeeeecCCeeEEEEeCccccccC-CceEEEEe
Q psy15572 81 EVTDKNFLALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVKDKLQEN-ESKQNLEL 142 (144)
Q Consensus 81 ~v~~~~~~~~~~v~LvFeGlDT~A~V~LNG~~Vg~~~nmF~~~~fDIt~~Lk~g-n~~~~l~~ 142 (144)
++| +. ..+++++|+|+||++.|+|||||++||.|+|||++|+||||++|+.| ||.++|.+
T Consensus 74 ~lp-~~-~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~~~f~~DIT~~l~~G~~n~L~V~v 134 (604)
T PRK10150 74 FIP-KG-WAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGYTPFEADITPYVYAGKSVRITVCV 134 (604)
T ss_pred ECC-cc-cCCCEEEEEECcccceEEEEECCEEeeeEcCCccceEEeCchhccCCCceEEEEEE
Confidence 887 33 47889999999999999999999999999999999999999999986 44777654
No 5
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.46 E-value=4.4e-13 Score=127.63 Aligned_cols=102 Identities=18% Similarity=0.300 Sum_probs=75.7
Q ss_pred eEEeecCcHHHHHHHHCCCCCCCCccccCcc----ccccc--ccCCeEEEEEecccccccccccccccccccccccccee
Q psy15572 6 STEATVPGGIYSDLRRGNILKEDVYYRDNDL----KYRWV--SKTGWTYSTEFEEEDVYYRDNDLKYRWVSKTGWTYSTE 79 (144)
Q Consensus 6 ~~~a~vPg~v~~~L~~ag~i~~dp~~~~n~~----~~~wv--~~~~W~y~~~f~~~~~~~~~~~~~~~~~~~~~~~y~~~ 79 (144)
|-++.|||.-.. .| .. .|.|..-.. ....+ ....+||+++|
T Consensus 82 w~~I~VP~~w~~----~G-~~-~~~y~n~~ypf~~~~p~vp~~n~~gwYrr~F--------------------------- 128 (1027)
T PRK09525 82 ADTIPVPSNWQL----HG-YD-APIYTNVTYPIPVNPPFVPEENPTGCYSLTF--------------------------- 128 (1027)
T ss_pred CcEeCCCCcHHh----cC-CC-CCccccccCCCCCCCCCCCCcCCeEEEEEEE---------------------------
Confidence 667889988663 33 33 454432110 11112 13468999999
Q ss_pred eeecccccCCCCcEEEEECccCcEEEEEECCEEeeeecCCeeEEEEeCccccccCCceEEEEe
Q psy15572 80 FEVTDKNFLALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVKDKLQENESKQNLEL 142 (144)
Q Consensus 80 ~~v~~~~~~~~~~v~LvFeGlDT~A~V~LNG~~Vg~~~nmF~~~~fDIt~~Lk~gn~~~~l~~ 142 (144)
++| +.+...++++|+|+||++.|+|||||+.||.++|+|.+++||||++|+.|+|.++|.+
T Consensus 129 -~vp-~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~~pfefDIT~~l~~G~N~L~V~V 189 (1027)
T PRK09525 129 -TVD-ESWLQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSRLPAEFDLSPFLRAGENRLAVMV 189 (1027)
T ss_pred -EeC-hhhcCCCeEEEEECeeccEEEEEECCEEEEeecCCCceEEEEChhhhcCCccEEEEEE
Confidence 888 4443333899999999999999999999999999999999999999999878877765
No 6
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=6.3e-12 Score=117.40 Aligned_cols=101 Identities=20% Similarity=0.247 Sum_probs=88.7
Q ss_pred eEEeecCcHHHHHHHHCCCCCCCCccccCcccccccccCCeEEEEEeccccccccccccccccccccccccceeeeeccc
Q psy15572 6 STEATVPGGIYSDLRRGNILKEDVYYRDNDLKYRWVSKTGWTYSTEFEEEDVYYRDNDLKYRWVSKTGWTYSTEFEVTDK 85 (144)
Q Consensus 6 ~~~a~vPg~v~~~L~~ag~i~~dp~~~~n~~~~~wv~~~~W~y~~~f~~~~~~~~~~~~~~~~~~~~~~~y~~~~~v~~~ 85 (144)
.++..+|+.+++++. ++++| +||.+.++ ++|....+|+|.++| .+| .
T Consensus 29 ~~~~~w~~~~~s~~~-~i~VP-~~w~~~~~--~~~~~~~~~~y~~~~----------------------------~~~-~ 75 (808)
T COG3250 29 AVPQRWPESLLSESR-AIAVP-GNWQDQGE--YDRPIYTNVWYPREV----------------------------FPP-K 75 (808)
T ss_pred ccccccchhhhhhcc-CccCC-ccHhhcCc--cCcceecceeeeecc----------------------------cCC-c
Confidence 367889999999998 99999 99999998 999999999999998 455 3
Q ss_pred ccCCCCcEEEEECccCcEEEEEECCEEeeeecCCeeEEEEeCccccccCCceEEE
Q psy15572 86 NFLALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVKDKLQENESKQNL 140 (144)
Q Consensus 86 ~~~~~~~v~LvFeGlDT~A~V~LNG~~Vg~~~nmF~~~~fDIt~~Lk~gn~~~~l 140 (144)
. ..++++.|.|+++|+.++|++||+.+++++|||++|++||+..+..+++..-+
T Consensus 76 ~-~~~~~~~l~f~~~~~~~~v~~ng~~~l~~eg~~~~fev~vng~~v~~~~~~~~ 129 (808)
T COG3250 76 V-PAGNRIGLYFDAVDTLAKVWLNGQEVLEFQGVYTPFEVDVTGPYVGGGKDSRI 129 (808)
T ss_pred c-ccCCceEEEEeccccceeEEeCCeEEEEecCceeEEEEeeccceecCCcceEE
Confidence 3 56789999999999999999999999999999999999999777765554433
No 7
>KOG2024|consensus
Probab=96.96 E-value=0.0011 Score=55.92 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=47.3
Q ss_pred cceeeeecccccC--CCCcEEEEECccCcEEEEEECCEEeeeecCCeeEEEEeCcccccc
Q psy15572 76 YSTEFEVTDKNFL--ALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVKDKLQE 133 (144)
Q Consensus 76 y~~~~~v~~~~~~--~~~~v~LvFeGlDT~A~V~LNG~~Vg~~~nmF~~~~fDIt~~Lk~ 133 (144)
|-|++.|| +.+. .+++++|+|-..-+.|.||+||..+.+|++.+.|++-||+.+++.
T Consensus 92 yer~v~vp-e~w~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~gg~lP~~~~is~~~~~ 150 (297)
T KOG2024|consen 92 YERTVTVP-ESWTQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEGGHLPLEPDISALVFF 150 (297)
T ss_pred EEEEEEcc-hhhhhhcCCeEEEEeecccceeEEEEcceeecccccCccccchhhhhhhhc
Confidence 33333777 3443 456899999999999999999999999999999999999987764
No 8
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.0013 Score=62.24 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=49.5
Q ss_pred ccCCCCcEEEEECccCcEEEEEECCEEeeeecCCeeEEEEeCccccccCCceEEEE
Q psy15572 86 NFLALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVKDKLQENESKQNLE 141 (144)
Q Consensus 86 ~~~~~~~v~LvFeGlDT~A~V~LNG~~Vg~~~nmF~~~~fDIt~~Lk~gn~~~~l~ 141 (144)
+......+.|.|+|+-+..+|+|||+.++..++.+.+.++||+++++.+.+.+++.
T Consensus 94 ~v~~ng~~~l~~eg~~~~fev~vng~~v~~~~~~~~~~~~dis~~~~~~~~~~~~~ 149 (808)
T COG3250 94 KVWLNGQEVLEFQGVYTPFEVDVTGPYVGGGKDSRITVEFDISPNLQTGPNGLVVT 149 (808)
T ss_pred eEEeCCeEEEEecCceeEEEEeeccceecCCcceEEEEeeccccccccCCccCceE
Confidence 45566799999999999999999999999999999999999999999866555544
No 9
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=96.77 E-value=0.0031 Score=48.80 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=29.3
Q ss_pred EEEEEECCEEeeeec--------CCeeEE-EEeCccccccCCceEEEEeC
Q psy15572 103 IATIYLNDKELGKTD--------NMFVRY-RFDVKDKLQENESKQNLELG 143 (144)
Q Consensus 103 ~A~V~LNG~~Vg~~~--------nmF~~~-~fDIt~~Lk~gn~~~~l~~~ 143 (144)
.-++||||+.|+..- .....| ++|||++|+.|+|.+++.||
T Consensus 15 ~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg 64 (172)
T PF08531_consen 15 RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLG 64 (172)
T ss_dssp EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEE
T ss_pred eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEe
Confidence 679999999999644 111223 59999999999999999886
No 10
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=96.19 E-value=0.024 Score=40.99 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=29.6
Q ss_pred EEE-CccCcEEEEEECCEEeeeec-CC--eeEEEEeCccccccCCceEE
Q psy15572 95 LVF-HGVDTIATIYLNDKELGKTD-NM--FVRYRFDVKDKLQENESKQN 139 (144)
Q Consensus 95 LvF-eGlDT~A~V~LNG~~Vg~~~-nm--F~~~~fDIt~~Lk~gn~~~~ 139 (144)
|.. .|-...+.|||||+.+|+.. +. -..|.|.. .+|+.+|+++.
T Consensus 55 l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~-~il~~~n~v~~ 102 (111)
T PF13364_consen 55 LNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPA-GILKYGNNVLV 102 (111)
T ss_dssp EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-B-TTBTTCEEEEE
T ss_pred EeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCc-eeecCCCEEEE
Confidence 444 37888999999999999977 33 34555555 46666665543
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=91.55 E-value=0.51 Score=45.35 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=45.8
Q ss_pred ccccccc-cceeeeeccccc--CCCCcEEEEECccCcEEEEEECCEEeeeecCCeeEEEEeCcc--ccccCC
Q psy15572 69 VSKTGWT-YSTEFEVTDKNF--LALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVKD--KLQENE 135 (144)
Q Consensus 69 ~~~~~~~-y~~~~~v~~~~~--~~~~~v~LvFeGlDT~A~V~LNG~~Vg~~~nmF~~~~fDIt~--~Lk~gn 135 (144)
.-.+||. |++++.++..+. ..+.+..|.+..+--.|.|||||+.+|...+......|.+.. -|+.+.
T Consensus 466 ~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~ 537 (840)
T PLN03059 466 RDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGI 537 (840)
T ss_pred CCCCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCc
Confidence 4456776 999888762211 134567799999999999999999999986655444444432 245554
No 12
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=78.23 E-value=4.2 Score=26.27 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=13.1
Q ss_pred CcEEEEEECCEEeeeec
Q psy15572 101 DTIATIYLNDKELGKTD 117 (144)
Q Consensus 101 DT~A~V~LNG~~Vg~~~ 117 (144)
=.-|+|||||+.+|.+.
T Consensus 10 p~gA~V~vdg~~~G~tp 26 (71)
T PF08308_consen 10 PSGAEVYVDGKYIGTTP 26 (71)
T ss_pred CCCCEEEECCEEeccCc
Confidence 34588999999999654
No 13
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=71.19 E-value=4 Score=26.93 Aligned_cols=13 Identities=23% Similarity=0.509 Sum_probs=11.9
Q ss_pred EEECCEEeeeecC
Q psy15572 106 IYLNDKELGKTDN 118 (144)
Q Consensus 106 V~LNG~~Vg~~~n 118 (144)
|||||..+|.+++
T Consensus 1 VFlNG~~iG~~~~ 13 (63)
T PF04566_consen 1 VFLNGVWIGIHSD 13 (63)
T ss_dssp EEETTEEEEEESS
T ss_pred CEECCEEEEEEcC
Confidence 7999999999886
No 14
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=70.35 E-value=15 Score=28.45 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=23.9
Q ss_pred CcEEEEEECCEEeee-----------------ecCCeeEEEEeCcc-ccccCCceEEEEe
Q psy15572 101 DTIATIYLNDKELGK-----------------TDNMFVRYRFDVKD-KLQENESKQNLEL 142 (144)
Q Consensus 101 DT~A~V~LNG~~Vg~-----------------~~nmF~~~~fDIt~-~Lk~gn~~~~l~~ 142 (144)
...-.|.||| ..+. +.|.++.++|+|.. .|+.|+|.+.|++
T Consensus 92 ~~~~~V~vNg-~~~~~~~~~~~~d~~~~r~g~~~G~~~~~~~~ipa~~L~~G~Nti~lt~ 150 (167)
T PF14683_consen 92 GGRLQVSVNG-WSGPFPSAPFGNDNAIYRSGIHRGNYRLYEFDIPASLLKAGENTITLTV 150 (167)
T ss_dssp T-EEEEEETT-EE-----------S--GGGT---S---EEEEEE-TTSS-SEEEEEEEEE
T ss_pred CCCEEEEEcC-ccCCccccccCCCCceeeCceecccEEEEEEEEcHHHEEeccEEEEEEE
Confidence 4566899999 4443 22567889999986 5577888888876
No 15
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=61.53 E-value=12 Score=27.08 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=24.5
Q ss_pred CcEEEEECccCcEEEEEECCEEeeeecC
Q psy15572 91 PNQFLVFHGVDTIATIYLNDKELGKTDN 118 (144)
Q Consensus 91 ~~v~LvFeGlDT~A~V~LNG~~Vg~~~n 118 (144)
-++-+++++-+....+||||++++....
T Consensus 64 ~hva~v~d~~~g~~~lYvnG~~~~~~~~ 91 (133)
T smart00560 64 VHLAGVYDGGAGKLSLYVNGVEVATSET 91 (133)
T ss_pred EEEEEEEECCCCeEEEEECCEEcccccc
Confidence 5889999999899999999999987654
No 16
>PF12222 PNGaseA: Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A; InterPro: IPR021102 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (PNGase A), unlike many other amidases, is capable of hydrolysing glycopeptides with an alpha-1,3-fucosylated asparagine-bound N-acetylglucosamine (GlcNAc). PNGase A is a heterodimer composed of a large and small subunit []. This entry represents the PNGase A precursor, which contains both subunits and is activated by proteolytic cleavage.
Probab=60.44 E-value=19 Score=32.23 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=40.3
Q ss_pred CcEEEEECc------cCcEEEEEECCEEeeeec-------CCeeEEEEeCccccc--cCCceEEEEeC
Q psy15572 91 PNQFLVFHG------VDTIATIYLNDKELGKTD-------NMFVRYRFDVKDKLQ--ENESKQNLELG 143 (144)
Q Consensus 91 ~~v~LvFeG------lDT~A~V~LNG~~Vg~~~-------nmF~~~~fDIt~~Lk--~gn~~~~l~~~ 143 (144)
.+|.|.|.. -|..|.|||||.+|-++. +-+-.++-|||+++. .++..+.+.||
T Consensus 46 ~~VvL~~~~~~~G~QyDRl~~v~l~gvev~RtSTaEP~~~gi~wt~~KDvT~Y~~L~~~~~~~~~~l~ 113 (427)
T PF12222_consen 46 SKVVLNLTVTSKGRQYDRLAGVWLGGVEVWRTSTAEPTPNGIVWTVSKDVTRYSSLFKKPQTLIFDLG 113 (427)
T ss_pred eEEEEEEEEEecceecceEEEEEECCEEEEeecCCCCCCCcceEEEEEcHHHhHHHhcCCceEEEEeC
Confidence 466666654 577899999999999754 557788999999875 36677777776
No 17
>KOG0496|consensus
Probab=51.90 E-value=38 Score=32.03 Aligned_cols=47 Identities=11% Similarity=0.205 Sum_probs=33.9
Q ss_pred EEEEEC-ccCcEEEEEECCEEeeeecCCeeEEEEeCcccc--ccCCceEE
Q psy15572 93 QFLVFH-GVDTIATIYLNDKELGKTDNMFVRYRFDVKDKL--QENESKQN 139 (144)
Q Consensus 93 v~LvFe-GlDT~A~V~LNG~~Vg~~~nmF~~~~fDIt~~L--k~gn~~~~ 139 (144)
..|... ++--.+.|||||+.+|.-.+.+....+..+.-+ +.|+|.+.
T Consensus 435 t~~~i~ls~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~ 484 (649)
T KOG0496|consen 435 TSLKIPLSLGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLA 484 (649)
T ss_pred ceEeecccccceEEEEECCEEeeeEeccccceeEEeecccccccCcceEE
Confidence 345555 888999999999999999998866666655544 44544433
No 18
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=48.97 E-value=41 Score=30.65 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=45.2
Q ss_pred eeeccccc--CCCCcEEEEECcc--------CcEEEEEECCEEeee------ecCCeeEEEEeCccccccCCceEEEEe
Q psy15572 80 FEVTDKNF--LALPNQFLVFHGV--------DTIATIYLNDKELGK------TDNMFVRYRFDVKDKLQENESKQNLEL 142 (144)
Q Consensus 80 ~~v~~~~~--~~~~~v~LvFeGl--------DT~A~V~LNG~~Vg~------~~nmF~~~~fDIt~~Lk~gn~~~~l~~ 142 (144)
|.+| .++ ..++.+.|.++.- ....+|+|||+.|+. ....+..+++.|..++..++|.+.++.
T Consensus 330 f~lP-~dl~~~~~~~i~l~L~y~y~~~~~~~~S~l~V~vNg~~i~s~~L~~~~~~~~~~~~v~iP~~~~~~~N~l~~~f 407 (605)
T PF03170_consen 330 FRLP-PDLFAWDGSGIPLHLRYRYTPGLDFDGSRLTVYVNGQFIGSLPLTPADGAGFDRYTVSIPRLLLPGRNQLQFEF 407 (605)
T ss_pred eeCC-ccccccCCCceEEEEEEecCCCCCCCCcEEEEEECCEEEEeEECCCCCCCccceeEEecCchhcCCCcEEEEEE
Confidence 5666 332 2456677776653 557899999999996 357899999999988888877766553
No 19
>PRK10824 glutaredoxin-4; Provisional
Probab=47.25 E-value=11 Score=27.59 Aligned_cols=21 Identities=14% Similarity=0.416 Sum_probs=18.0
Q ss_pred ECccCcEEEEEECCEEeeeec
Q psy15572 97 FHGVDTIATIYLNDKELGKTD 117 (144)
Q Consensus 97 FeGlDT~A~V~LNG~~Vg~~~ 117 (144)
+-|--|+-.|||||++||-++
T Consensus 65 ~sg~~TVPQIFI~G~~IGG~d 85 (115)
T PRK10824 65 YANWPTFPQLWVDGELVGGCD 85 (115)
T ss_pred HhCCCCCCeEEECCEEEcChH
Confidence 347789999999999999765
No 20
>PLN03059 beta-galactosidase; Provisional
Probab=45.94 E-value=29 Score=33.79 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=42.4
Q ss_pred cccCCeEEEEEeccccc--cccccccccccccc------c-ccccceeeeecccccCCCCcEEEEECccCcEEEEEECCE
Q psy15572 41 VSKTGWTYSTEFEEEDV--YYRDNDLKYRWVSK------T-GWTYSTEFEVTDKNFLALPNQFLVFHGVDTIATIYLNDK 111 (144)
Q Consensus 41 v~~~~W~y~~~f~~~~~--~~~~~~~~~~~~~~------~-~~~y~~~~~v~~~~~~~~~~v~LvFeGlDT~A~V~LNG~ 111 (144)
+....|.|.-.+.-+.. +....+..-.|... . .=+|+..|++| .....+.|.+.|. ....|||||+
T Consensus 579 ls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p----~g~Dpv~LDm~gm-GKG~aWVNG~ 653 (840)
T PLN03059 579 LSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAP----GGNDPLALDMSSM-GKGQIWINGQ 653 (840)
T ss_pred cccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCC----CCCCCEEEecccC-CCeeEEECCc
Confidence 44445777766521111 11111223456443 2 22488888887 2345699999875 6789999999
Q ss_pred Eeee
Q psy15572 112 ELGK 115 (144)
Q Consensus 112 ~Vg~ 115 (144)
-||+
T Consensus 654 nIGR 657 (840)
T PLN03059 654 SIGR 657 (840)
T ss_pred cccc
Confidence 9996
No 21
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=45.34 E-value=45 Score=30.38 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=32.1
Q ss_pred cEEEEEECCEEeeee----cCC-eeEEEEeCccccccCCceEEEEe
Q psy15572 102 TIATIYLNDKELGKT----DNM-FVRYRFDVKDKLQENESKQNLEL 142 (144)
Q Consensus 102 T~A~V~LNG~~Vg~~----~nm-F~~~~fDIt~~Lk~gn~~~~l~~ 142 (144)
+.-+|+|||+.++.. ++. ....+++|...+..+-|.+.|++
T Consensus 63 S~L~V~lNg~~v~s~~l~~~~~~~~~~~i~Ip~~l~~g~N~l~~~~ 108 (605)
T PF03170_consen 63 SQLTVSLNGQPVGSIPLDAESAQPQTVTIPIPPALIKGFNRLTFEF 108 (605)
T ss_pred ceEEEEECCEEeEEEecCcCCCCceEEEEecChhhcCCceEEEEEE
Confidence 467899999999963 344 88899999998887776666654
No 22
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=44.84 E-value=28 Score=24.01 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.0
Q ss_pred cEEEEECccCcEEEEEECCEEeeeecC
Q psy15572 92 NQFLVFHGVDTIATIYLNDKELGKTDN 118 (144)
Q Consensus 92 ~v~LvFeGlDT~A~V~LNG~~Vg~~~n 118 (144)
++-++++ .....+||||++++....
T Consensus 89 ~l~~~~~--~~~~~lyvnG~~~~~~~~ 113 (157)
T PF13385_consen 89 HLALTYD--GSTVTLYVNGELVGSSTI 113 (157)
T ss_dssp EEEEEEE--TTEEEEEETTEEETTCTE
T ss_pred EEEEEEE--CCeEEEEECCEEEEeEec
Confidence 7788888 677999999999997654
No 23
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=44.32 E-value=36 Score=23.25 Aligned_cols=37 Identities=27% Similarity=0.478 Sum_probs=24.3
Q ss_pred cceeeeecccccCCCCcEEEEECccCcEEEEEE--CCEEee
Q psy15572 76 YSTEFEVTDKNFLALPNQFLVFHGVDTIATIYL--NDKELG 114 (144)
Q Consensus 76 y~~~~~v~~~~~~~~~~v~LvFeGlDT~A~V~L--NG~~Vg 114 (144)
|++.|..++ ...+.+++.|.|.| +.++.|.- ||..++
T Consensus 43 ~~R~F~F~D-g~e~~~~~~l~f~~-~~V~~i~~~~~g~~l~ 81 (85)
T PF14814_consen 43 YTRGFDFPD-GQEPARRVRLTFSG-GRVSSIQDLDNGRDLG 81 (85)
T ss_dssp EE--EEETT-CEE--EEEEEEEET-TEEEEEEETTTTEE-S
T ss_pred EECCCCCCC-CCccCEEEEEEECC-CEEEEEEEcCCCCccC
Confidence 445557763 33466899999999 99999987 677765
No 24
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=43.66 E-value=79 Score=21.22 Aligned_cols=31 Identities=16% Similarity=0.107 Sum_probs=25.3
Q ss_pred CCCcEEEEECccCcEEEEEECCEEeeeecCC
Q psy15572 89 ALPNQFLVFHGVDTIATIYLNDKELGKTDNM 119 (144)
Q Consensus 89 ~~~~v~LvFeGlDT~A~V~LNG~~Vg~~~nm 119 (144)
..+.+.|...|-+-...-+|||+.+|+....
T Consensus 30 ~~~~l~l~a~~~~~~~~W~vdg~~~g~~~~~ 60 (89)
T PF06832_consen 30 ERQPLVLKAAGGRGPVYWFVDGEPLGTTQPG 60 (89)
T ss_pred ccceEEEEEeCCCCcEEEEECCEEcccCCCC
Confidence 4577888888887789999999999776654
No 25
>PF11824 DUF3344: Protein of unknown function (DUF3344); InterPro: IPR021779 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 367 to 1857 amino acids in length.
Probab=42.29 E-value=61 Score=26.98 Aligned_cols=44 Identities=20% Similarity=0.310 Sum_probs=29.6
Q ss_pred ccCcEEEEEECCEEeee------------e-------cCCeeEEEEeCccccccCCceEEEEe
Q psy15572 99 GVDTIATIYLNDKELGK------------T-------DNMFVRYRFDVKDKLQENESKQNLEL 142 (144)
Q Consensus 99 GlDT~A~V~LNG~~Vg~------------~-------~nmF~~~~fDIt~~Lk~gn~~~~l~~ 142 (144)
+......|.+||+.+.. . +.-+.-|.+|||++++.+++...|+-
T Consensus 69 ~~~~~~~~~fNg~~~~~~~l~~~~~~Y~d~~~~g~~~~~~yg~~vYDVT~~i~~g~n~~~v~~ 131 (271)
T PF11824_consen 69 GYYPSFTVTFNGNTLEEFNLETPEAPYVDQKGHGNYVDYDYGMWVYDVTDLIKSGENTVTVTT 131 (271)
T ss_pred CCCceEEEEECCccceeeeccCCCCceEEecCccceeccceEEEEEECcccccCCceEEEEEe
Confidence 35667778888877731 1 11235567999999999887776653
No 26
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=41.50 E-value=48 Score=31.46 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=32.6
Q ss_pred CcEEEEEECCEEeeee------cCCeeEEEEeCccccccCCceEEEEe
Q psy15572 101 DTIATIYLNDKELGKT------DNMFVRYRFDVKDKLQENESKQNLEL 142 (144)
Q Consensus 101 DT~A~V~LNG~~Vg~~------~nmF~~~~fDIt~~Lk~gn~~~~l~~ 142 (144)
.+.-.|.|||+.|+.. .+.....+++|...+..+.|.+.+++
T Consensus 114 ~S~L~V~lNg~~v~s~pL~~~~~~~~~~~~i~IP~~l~~g~N~L~~~~ 161 (756)
T PRK11114 114 LSHLKVYLNGELMGTLPLDKEQLGKKVLAQLPIDPRFITDFNRLRLEF 161 (756)
T ss_pred CCeEEEEECCEEeEEEecCcccCCCcceeEEecCHHHcCCCceEEEEE
Confidence 4678999999999864 26678899999887777766666653
No 27
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=39.88 E-value=81 Score=22.27 Aligned_cols=28 Identities=11% Similarity=0.036 Sum_probs=21.6
Q ss_pred CcEEEEECccCcEEEEEECCEEeeeecCC
Q psy15572 91 PNQFLVFHGVDTIATIYLNDKELGKTDNM 119 (144)
Q Consensus 91 ~~v~LvFeGlDT~A~V~LNG~~Vg~~~nm 119 (144)
....+.+. .|..+.+||||+.|....+.
T Consensus 60 G~y~f~~~-~~d~~~l~idg~~vid~~~~ 87 (145)
T PF07691_consen 60 GTYTFSLT-SDDGARLWIDGKLVIDNWGN 87 (145)
T ss_dssp EEEEEEEE-ESSEEEEEETTEEEEECSCT
T ss_pred ceEEEEEE-ecccEEEEECCEEEEcCCcc
Confidence 45667676 44469999999999988754
No 28
>KOG0496|consensus
Probab=38.99 E-value=73 Score=30.19 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=43.5
Q ss_pred ccccceeeeecccccCCCCcEEEEECccCcEEEEEECCEEeeeec---CCeeEEEEeCcccccc-CCceEEEEe
Q psy15572 73 GWTYSTEFEVTDKNFLALPNQFLVFHGVDTIATIYLNDKELGKTD---NMFVRYRFDVKDKLQE-NESKQNLEL 142 (144)
Q Consensus 73 ~~~y~~~~~v~~~~~~~~~~v~LvFeGlDT~A~V~LNG~~Vg~~~---nmF~~~~fDIt~~Lk~-gn~~~~l~~ 142 (144)
+.+|-+.|++| .....+.|.++|- .-..|||||+-||+.= |.-+.|-+.= +.||. +|.++.+|+
T Consensus 557 P~~w~k~f~~p----~g~~~t~Ldm~g~-GKG~vwVNG~niGRYW~~~G~Q~~yhvPr-~~Lk~~~N~lvvfEe 624 (649)
T KOG0496|consen 557 PLTWYKTFDIP----SGSEPTALDMNGW-GKGQVWVNGQNIGRYWPSFGPQRTYHVPR-SWLKPSGNLLVVFEE 624 (649)
T ss_pred CeEEEEEecCC----CCCCCeEEecCCC-cceEEEECCcccccccCCCCCceEEECcH-HHhCcCCceEEEEEe
Confidence 44455578887 2345799999994 6789999999999633 5544555543 46776 566666664
No 29
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=37.23 E-value=1.2e+02 Score=19.96 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=21.0
Q ss_pred CCcEEEEECccCcEEEEEECCEEeeee
Q psy15572 90 LPNQFLVFHGVDTIATIYLNDKELGKT 116 (144)
Q Consensus 90 ~~~v~LvFeGlDT~A~V~LNG~~Vg~~ 116 (144)
-..+.+...--+..|.|.+||..+...
T Consensus 24 ~~~v~v~a~~~~~~a~v~vng~~~~~~ 50 (88)
T PF12733_consen 24 VDSVTVTATPEDSGATVTVNGVPVNSG 50 (88)
T ss_pred ceEEEEEEEECCCCEEEEEcCEEccCC
Confidence 356777777778899999999877543
No 30
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=36.66 E-value=54 Score=23.35 Aligned_cols=28 Identities=11% Similarity=0.247 Sum_probs=20.2
Q ss_pred CcEEEEEECCEEeeeecC-CeeEEEEeCc
Q psy15572 101 DTIATIYLNDKELGKTDN-MFVRYRFDVK 128 (144)
Q Consensus 101 DT~A~V~LNG~~Vg~~~n-mF~~~~fDIt 128 (144)
.-..+|+|||+.||+..+ .|...+++-.
T Consensus 40 ~~~~~v~vdg~~ig~l~~g~y~~~~v~pG 68 (117)
T PF11008_consen 40 AVKPDVYVDGELIGELKNGGYFYVEVPPG 68 (117)
T ss_pred cccceEEECCEEEEEeCCCeEEEEEECCC
Confidence 566789999999998764 5655554433
No 31
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.17 E-value=26 Score=25.69 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=16.9
Q ss_pred ECccCcEEEEEECCEEeeeec
Q psy15572 97 FHGVDTIATIYLNDKELGKTD 117 (144)
Q Consensus 97 FeGlDT~A~V~LNG~~Vg~~~ 117 (144)
|..=-|+-.+||||+.||-++
T Consensus 66 ~s~WPT~PQLyi~GEfvGG~D 86 (105)
T COG0278 66 YSNWPTFPQLYVNGEFVGGCD 86 (105)
T ss_pred hcCCCCCceeeECCEEeccHH
Confidence 444557888999999999876
No 32
>PF13954 PapC_N: PapC N-terminal domain; PDB: 2VQI_B 3FIP_A 3RFZ_E 3OHN_A 1ZDV_A 1ZE3_D 3BWU_D 1ZDX_A.
Probab=30.67 E-value=53 Score=24.37 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=13.2
Q ss_pred cEEEEEECCEEeeeec
Q psy15572 102 TIATIYLNDKELGKTD 117 (144)
Q Consensus 102 T~A~V~LNG~~Vg~~~ 117 (144)
+..+|+|||+.+++.+
T Consensus 32 Y~vdv~vN~~~~~~~~ 47 (146)
T PF13954_consen 32 YSVDVYVNGKFIGRYD 47 (146)
T ss_dssp EEEEEEETTEEEEEEE
T ss_pred EEEEEEECCeeeeeEE
Confidence 5679999999999543
No 33
>PRK06789 flagellar motor switch protein; Validated
Probab=29.60 E-value=56 Score=22.37 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=15.3
Q ss_pred cCcEEEEEECCEEeeeec
Q psy15572 100 VDTIATIYLNDKELGKTD 117 (144)
Q Consensus 100 lDT~A~V~LNG~~Vg~~~ 117 (144)
+.-..+|++||+.+|+-+
T Consensus 40 ~~epvdI~vNg~lia~GE 57 (74)
T PRK06789 40 TKNTVRLMLENEEIGTGK 57 (74)
T ss_pred CCCCEEEEECCEEEeEEe
Confidence 677889999999999744
No 34
>PF11824 DUF3344: Protein of unknown function (DUF3344); InterPro: IPR021779 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 367 to 1857 amino acids in length.
Probab=28.80 E-value=1.3e+02 Score=25.09 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=31.1
Q ss_pred ECccCcEEEEEECCEEeeeec---CCeeEEEEeCccccccCCceEEEE
Q psy15572 97 FHGVDTIATIYLNDKELGKTD---NMFVRYRFDVKDKLQENESKQNLE 141 (144)
Q Consensus 97 FeGlDT~A~V~LNG~~Vg~~~---nmF~~~~fDIt~~Lk~gn~~~~l~ 141 (144)
.-|-+....+.+||+.+.... +.|--..+||++.|+.+++...+.
T Consensus 206 ~s~~~~~g~~~FNg~~l~~~~~~~~~~~~~~~DVt~~l~~~~n~~~~~ 253 (271)
T PF11824_consen 206 LSGGDGEGNLTFNGTNLWNGTPSGSYFGYDTWDVTDYLKSGNNSAFIQ 253 (271)
T ss_pred EeccCCCCEEEECCcccCCCCCCccceeeEeeeccccccCCCceEEEE
Confidence 334444478888887666543 456666799999999877765554
No 35
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=28.16 E-value=1.1e+02 Score=22.44 Aligned_cols=31 Identities=10% Similarity=0.003 Sum_probs=23.0
Q ss_pred CCCcEEEEECccCcEEEEEECCEEeeeecCC
Q psy15572 89 ALPNQFLVFHGVDTIATIYLNDKELGKTDNM 119 (144)
Q Consensus 89 ~~~~v~LvFeGlDT~A~V~LNG~~Vg~~~nm 119 (144)
.++-..+.+.......+|||||++|.+..+.
T Consensus 126 ~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 126 PGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred CCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 3444556666677778899999999987654
No 36
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=27.88 E-value=2.2e+02 Score=20.04 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=20.0
Q ss_pred CcEEEEECccCcEEEEEECCEEeeeecC
Q psy15572 91 PNQFLVFHGVDTIATIYLNDKELGKTDN 118 (144)
Q Consensus 91 ~~v~LvFeGlDT~A~V~LNG~~Vg~~~n 118 (144)
....+.+.+ |-.+.+||||+.|....+
T Consensus 58 G~y~f~~~~-~~~~~l~Idg~~vid~~~ 84 (136)
T smart00758 58 GEYTFSITS-DDGARLWIDGKLVIDNWG 84 (136)
T ss_pred ccEEEEEEc-CCcEEEEECCcEEEcCCc
Confidence 456677754 556899999999997643
No 37
>KOG1752|consensus
Probab=27.60 E-value=36 Score=24.55 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=18.7
Q ss_pred EEEECccCcEEEEEECCEEeeeec
Q psy15572 94 FLVFHGVDTIATIYLNDKELGKTD 117 (144)
Q Consensus 94 ~LvFeGlDT~A~V~LNG~~Vg~~~ 117 (144)
.....|--|+-.|||||+.||..+
T Consensus 59 l~~~tg~~tvP~vFI~Gk~iGG~~ 82 (104)
T KOG1752|consen 59 LKKLTGQRTVPNVFIGGKFIGGAS 82 (104)
T ss_pred HHHhcCCCCCCEEEECCEEEcCHH
Confidence 334456669999999999999765
No 38
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=25.83 E-value=2.4e+02 Score=22.54 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=21.4
Q ss_pred cEEEEECccCcEEEEEECCEEeeee
Q psy15572 92 NQFLVFHGVDTIATIYLNDKELGKT 116 (144)
Q Consensus 92 ~v~LvFeGlDT~A~V~LNG~~Vg~~ 116 (144)
-+-++.|+=+....+|+||+.|...
T Consensus 107 tva~~ad~~~~~ykly~NG~~v~~~ 131 (190)
T PF02973_consen 107 TVAFVADSKNKGYKLYVNGELVSTL 131 (190)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEE
T ss_pred EEEEEEecCCCeEEEEeCCeeEEEe
Confidence 4678888899999999999888865
No 39
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=24.94 E-value=80 Score=23.92 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=14.9
Q ss_pred CcEEEEEECCEEeeee
Q psy15572 101 DTIATIYLNDKELGKT 116 (144)
Q Consensus 101 DT~A~V~LNG~~Vg~~ 116 (144)
+.+|+|.|+|+.+|+|
T Consensus 28 ~~Y~~i~Ld~~~vaRT 43 (146)
T cd04013 28 RYYCELCLDKTLYART 43 (146)
T ss_pred CceEEEEECCEEEEEE
Confidence 6899999999999987
No 40
>PRK08158 type III secretion system protein SpaO; Validated
Probab=24.66 E-value=1.2e+02 Score=26.14 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=29.5
Q ss_pred EEEE-CccCcEEEEEECCEEeeeec----CCeeEEEEeCccccccCCc
Q psy15572 94 FLVF-HGVDTIATIYLNDKELGKTD----NMFVRYRFDVKDKLQENES 136 (144)
Q Consensus 94 ~LvF-eGlDT~A~V~LNG~~Vg~~~----nmF~~~~fDIt~~Lk~gn~ 136 (144)
.|.+ ..++-..+|++||+.||+-+ + -++-+-|++.+...++
T Consensus 256 Vl~L~~~~~~~V~I~vNg~lva~GELV~v~--~~lGVrIt~i~~~~~~ 301 (303)
T PRK08158 256 LLSLPTNAELNVEIRANGALLGNGELVQMD--DTLGVEIHEWLSGSGN 301 (303)
T ss_pred EEECCCCCCCceEEEECCEEEEEEEEEEEC--CEEEEEEEEEecCCCC
Confidence 3344 35888999999999999833 2 2577888887766544
No 41
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=24.37 E-value=1.2e+02 Score=24.69 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=23.2
Q ss_pred CcEEEEECccCcEEEEEECCEEeeeecC
Q psy15572 91 PNQFLVFHGVDTIATIYLNDKELGKTDN 118 (144)
Q Consensus 91 ~~v~LvFeGlDT~A~V~LNG~~Vg~~~n 118 (144)
-.+.|+|+.+..-|..+++|..|+...|
T Consensus 95 H~Y~i~~~p~~~tASfy~DG~lI~tw~G 122 (198)
T PF09264_consen 95 HKYEIVFSPLTNTASFYFDGTLIATWSG 122 (198)
T ss_dssp EEEEEEEETTTTEEEEEETTEEEEEE--
T ss_pred eEEEEEecCCCCceEEEECCEEEeeccC
Confidence 4678999999999999999999996544
No 42
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=24.37 E-value=49 Score=22.91 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=17.0
Q ss_pred CccCcEEEEEECCEEeeeec
Q psy15572 98 HGVDTIATIYLNDKELGKTD 117 (144)
Q Consensus 98 eGlDT~A~V~LNG~~Vg~~~ 117 (144)
.|-.|+-.|++||+.||.++
T Consensus 63 tg~~tvP~vfi~g~~iGG~d 82 (97)
T TIGR00365 63 SNWPTIPQLYVKGEFVGGCD 82 (97)
T ss_pred hCCCCCCEEEECCEEEeChH
Confidence 46779999999999998765
No 43
>cd03581 NTR_Sfrp3_like NTR domain, Secreted frizzled-related protein (Sfrp) 3-like subfamily; composed of proteins similar to human Sfrp3 and Sfrp4. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse functions and are thought to work in Wnt signaling indirectly, as modulators or antagonists by binding Wnt ligands, and directly, via the Wnt receptor, Frizzled. They participate in regulating the patterning along the anteroposterior axis in vertebrates. Human Sfrp3 may suppress the growth and invasiveness of androgen-independent prostate cancer cells.
Probab=24.22 E-value=1.1e+02 Score=22.04 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=27.2
Q ss_pred CccCcEEEEEECCEEeeeecCCeeEEEEeCccccccCC
Q psy15572 98 HGVDTIATIYLNDKELGKTDNMFVRYRFDVKDKLQENE 135 (144)
Q Consensus 98 eGlDT~A~V~LNG~~Vg~~~nmF~~~~fDIt~~Lk~gn 135 (144)
.++|++-.|.|-+... .+.|..|.+.|...+|.+.
T Consensus 6 ~~~dYa~kv~V~~~~~---~~~~~~y~v~V~~V~K~g~ 40 (111)
T cd03581 6 NNYNYVIRAKVKEVKR---GCHEVTAVVEVKEILKSSL 40 (111)
T ss_pred cCCCEEEEEEEEEEEe---cCCEEEEEEEEEEEEecCC
Confidence 3577877777766544 4999999999999998754
No 44
>PF07550 DUF1533: Protein of unknown function (DUF1533); InterPro: IPR011432 This domain is found duplicated in proteins of unknown function. The proteins typically also contain leucine-rich repeats.
Probab=24.05 E-value=2e+02 Score=18.49 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=9.4
Q ss_pred cEEEEEECCEEe
Q psy15572 102 TIATIYLNDKEL 113 (144)
Q Consensus 102 T~A~V~LNG~~V 113 (144)
..-+|.|||...
T Consensus 7 ~I~~V~VNg~~y 18 (65)
T PF07550_consen 7 AITSVTVNGKEY 18 (65)
T ss_pred hCCEEEECCEEe
Confidence 345788999998
No 45
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=23.60 E-value=1.2e+02 Score=23.47 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=23.0
Q ss_pred CcEEEEECccCcEEEEEECCEEeeeec
Q psy15572 91 PNQFLVFHGVDTIATIYLNDKELGKTD 117 (144)
Q Consensus 91 ~~v~LvFeGlDT~A~V~LNG~~Vg~~~ 117 (144)
-++-++.++-.-...+|+||++++...
T Consensus 93 ~hv~~t~d~~~g~~~lyvnG~~~~~~~ 119 (201)
T cd00152 93 HHICVTWESTSGIAELWVNGKLSVRKS 119 (201)
T ss_pred EEEEEEEECCCCcEEEEECCEEecccc
Confidence 467788899999999999999998654
No 46
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=22.81 E-value=55 Score=22.12 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=16.7
Q ss_pred CccCcEEEEEECCEEeeeec
Q psy15572 98 HGVDTIATIYLNDKELGKTD 117 (144)
Q Consensus 98 eGlDT~A~V~LNG~~Vg~~~ 117 (144)
.|-.|+-.|++||+.||.++
T Consensus 59 ~g~~tvP~vfi~g~~iGG~~ 78 (90)
T cd03028 59 SNWPTFPQLYVNGELVGGCD 78 (90)
T ss_pred hCCCCCCEEEECCEEEeCHH
Confidence 47788899999999998754
No 47
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=21.96 E-value=96 Score=19.03 Aligned_cols=12 Identities=8% Similarity=0.285 Sum_probs=9.1
Q ss_pred EEEEECCEEeee
Q psy15572 104 ATIYLNDKELGK 115 (144)
Q Consensus 104 A~V~LNG~~Vg~ 115 (144)
..|+|||+.+-.
T Consensus 21 ~~V~VNG~~vv~ 32 (48)
T PF07908_consen 21 DYVFVNGQIVVE 32 (48)
T ss_dssp EEEEETTEEEEC
T ss_pred EEEEECCEEEEE
Confidence 358999988763
No 48
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=21.61 E-value=1.8e+02 Score=20.76 Aligned_cols=30 Identities=10% Similarity=-0.068 Sum_probs=25.3
Q ss_pred CCCCcEEEEECccCcEEEEEECCEEeeeec
Q psy15572 88 LALPNQFLVFHGVDTIATIYLNDKELGKTD 117 (144)
Q Consensus 88 ~~~~~v~LvFeGlDT~A~V~LNG~~Vg~~~ 117 (144)
..++...|.|.--+..-.|++||+++.+-.
T Consensus 75 ~~g~~F~l~i~~~~~~f~i~vng~~~~~F~ 104 (127)
T cd00070 75 QPGQPFELTILVEEDKFQIFVNGQHFFSFP 104 (127)
T ss_pred CCCCeEEEEEEEcCCEEEEEECCEeEEEec
Confidence 356788899999999999999999887644
No 49
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=21.58 E-value=66 Score=22.66 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=17.4
Q ss_pred CCCcEEEEECccCcEEEEEEC
Q psy15572 89 ALPNQFLVFHGVDTIATIYLN 109 (144)
Q Consensus 89 ~~~~v~LvFeGlDT~A~V~LN 109 (144)
.+.++.|+|+|-|...+.|++
T Consensus 54 ~g~~l~v~~dg~~~~~D~W~~ 74 (96)
T smart00561 54 KGYRLLLHFDGWDDKYDFWCD 74 (96)
T ss_pred ECCEEEEEEccCCCcCCEEEE
Confidence 367999999999988777764
No 50
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=21.31 E-value=59 Score=20.66 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=16.2
Q ss_pred CccCcEEEEEECCEEeeee
Q psy15572 98 HGVDTIATIYLNDKELGKT 116 (144)
Q Consensus 98 eGlDT~A~V~LNG~~Vg~~ 116 (144)
.|+.++-.|++||+.+|..
T Consensus 50 ~g~~~vP~v~i~g~~igg~ 68 (84)
T TIGR02180 50 TGQRTVPNIFINGKFIGGC 68 (84)
T ss_pred hCCCCCCeEEECCEEEcCH
Confidence 4778889999999999864
No 51
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=21.24 E-value=1.9e+02 Score=20.49 Aligned_cols=29 Identities=14% Similarity=-0.010 Sum_probs=24.2
Q ss_pred CCCCcEEEEECccCcEEEEEECCEEeeee
Q psy15572 88 LALPNQFLVFHGVDTIATIYLNDKELGKT 116 (144)
Q Consensus 88 ~~~~~v~LvFeGlDT~A~V~LNG~~Vg~~ 116 (144)
..++...|.+.--+....|++||++++.-
T Consensus 80 ~~g~~F~i~I~~~~~~f~I~vng~~~~~F 108 (133)
T PF00337_consen 80 QPGQPFEIRIRVEEDGFKIYVNGKHFCSF 108 (133)
T ss_dssp TTTSEEEEEEEEESSEEEEEETTEEEEEE
T ss_pred cCCceEEEEEEEecCeeEEEECCeEEEEe
Confidence 35677888888889999999999998754
No 52
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=21.19 E-value=60 Score=22.57 Aligned_cols=20 Identities=10% Similarity=0.320 Sum_probs=17.5
Q ss_pred CccCcEEEEEECCEEeeeec
Q psy15572 98 HGVDTIATIYLNDKELGKTD 117 (144)
Q Consensus 98 eGlDT~A~V~LNG~~Vg~~~ 117 (144)
.|-.|+=.|++||+.||..+
T Consensus 57 tg~~tvP~Vfi~g~~iGG~d 76 (99)
T TIGR02189 57 GCSPAVPAVFVGGKLVGGLE 76 (99)
T ss_pred cCCCCcCeEEECCEEEcCHH
Confidence 47889999999999998765
No 53
>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.13 E-value=82 Score=23.56 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=18.7
Q ss_pred CCcEEEEECccCcEEEEEECCEEeeeec
Q psy15572 90 LPNQFLVFHGVDTIATIYLNDKELGKTD 117 (144)
Q Consensus 90 ~~~v~LvFeGlDT~A~V~LNG~~Vg~~~ 117 (144)
+.-+.|. .-+.-..+|.+||+.||+-+
T Consensus 95 Gsvi~Ld-~~~~~~VdI~vNg~~Ig~GE 121 (136)
T COG1886 95 GSVIELD-KLAGEPVDILVNGRLIGRGE 121 (136)
T ss_pred CCEEEcC-CcCCCceEEEECCEEEEEEe
Confidence 3334444 44667789999999999743
No 54
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=20.92 E-value=1.9e+02 Score=19.27 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=24.7
Q ss_pred CcEEEEEC-ccCcEEEEEECCEEeeee----cCCeeEEEEeCc
Q psy15572 91 PNQFLVFH-GVDTIATIYLNDKELGKT----DNMFVRYRFDVK 128 (144)
Q Consensus 91 ~~v~LvFe-GlDT~A~V~LNG~~Vg~~----~nmF~~~~fDIt 128 (144)
..+.+.-. .-+-.|+|+++++.||.. +-+=++|.|.++
T Consensus 16 ~~i~v~~rpk~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~ 58 (63)
T PF11324_consen 16 PGITVKARPKKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMA 58 (63)
T ss_pred CceEEEcCCCCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEE
Confidence 34444444 335689999999999963 344566776654
No 55
>PHA03050 glutaredoxin; Provisional
Probab=20.76 E-value=66 Score=22.92 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=17.8
Q ss_pred CccCcEEEEEECCEEeeeecC
Q psy15572 98 HGVDTIATIYLNDKELGKTDN 118 (144)
Q Consensus 98 eGlDT~A~V~LNG~~Vg~~~n 118 (144)
-|-.|+-.|++||+.||..+.
T Consensus 65 tG~~tVP~IfI~g~~iGG~dd 85 (108)
T PHA03050 65 TGGRTVPRIFFGKTSIGGYSD 85 (108)
T ss_pred cCCCCcCEEEECCEEEeChHH
Confidence 477899999999999997654
No 56
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=20.39 E-value=23 Score=23.42 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=19.4
Q ss_pred cCCCCcEEEEECccCcEEEEEECC
Q psy15572 87 FLALPNQFLVFHGVDTIATIYLND 110 (144)
Q Consensus 87 ~~~~~~v~LvFeGlDT~A~V~LNG 110 (144)
...++.+.|.|+||+.++.=|+|-
T Consensus 14 l~~~~~V~lDF~gv~~~~ssFl~e 37 (74)
T PF14213_consen 14 LKEGEKVVLDFEGVESITSSFLNE 37 (74)
T ss_pred HhcCCeEEEECCCcccccHHHHHH
Confidence 346677999999999988877763
No 57
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=20.31 E-value=1.4e+02 Score=23.25 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=24.8
Q ss_pred CcEEEEECccCcEEEEEECCEEeeeecCCeeEEEEe
Q psy15572 91 PNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYRFD 126 (144)
Q Consensus 91 ~~v~LvFeGlDT~A~V~LNG~~Vg~~~nmF~~~~fD 126 (144)
-++-++.++-.-.+.+|+||+++ ...+.-..+.+.
T Consensus 93 ~hvc~tw~~~~g~~~lyvnG~~~-~~~~~~~g~~i~ 127 (206)
T smart00159 93 HHICTTWESSSGIAELWVDGKPG-VRKGLAKGYTVK 127 (206)
T ss_pred EEEEEEEECCCCcEEEEECCEEc-ccccccCCcEEC
Confidence 46778899999999999999997 333333334443
No 58
>PF12143 PPO1_KFDV: Protein of unknown function (DUF_B2219); InterPro: IPR022740 This domain represents the C terminus of polyphenol oxidases. This region is primarily found in eukaryotes, although a few bacterial members also exist. It is typically between 138 and 152 amino acids in length and the family is found in association with PF00264 from PFAM and PF12142 from PFAM. Many members are plant or plastid polyphenol oxidases, and there is a highly conserved KFDV sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process
Probab=20.19 E-value=2.4e+02 Score=21.13 Aligned_cols=54 Identities=19% Similarity=0.404 Sum_probs=32.7
Q ss_pred CCCcEEEEECccC------cEEEEEEC-C-E-Ee---------ee--------e---cCCeeEEEEeCcccccc----CC
Q psy15572 89 ALPNQFLVFHGVD------TIATIYLN-D-K-EL---------GK--------T---DNMFVRYRFDVKDKLQE----NE 135 (144)
Q Consensus 89 ~~~~v~LvFeGlD------T~A~V~LN-G-~-~V---------g~--------~---~nmF~~~~fDIt~~Lk~----gn 135 (144)
..+.-.|+++||. -..+|||| . . .. |+ + .++=+.+++-||++|+. +.
T Consensus 26 ~~~EEVLvIegIe~d~~~~vkFDVfvN~~~~~~~~~~~~~EfaGSF~~vpH~~~~~~~~~~t~~rlgitdlLedLga~~d 105 (130)
T PF12143_consen 26 EEEEEVLVIEGIEIDDDVYVKFDVFVNVPEDDKPSGPDCAEFAGSFVNVPHKHHKGKKKMKTSLRLGITDLLEDLGAEDD 105 (130)
T ss_pred cCceEEEEEccEEecCCcceEEEEEEecccccCCCCCcceEEEEEEeeccCcccCCCccceeEEEEEhhHHHHHhCCCCC
Confidence 3455678899865 45789999 2 1 11 11 0 12335588999998853 44
Q ss_pred ceEEEEe
Q psy15572 136 SKQNLEL 142 (144)
Q Consensus 136 ~~~~l~~ 142 (144)
..++++|
T Consensus 106 ~sIvVTL 112 (130)
T PF12143_consen 106 DSIVVTL 112 (130)
T ss_pred CEEEEEE
Confidence 5566665
No 59
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=20.17 E-value=64 Score=21.23 Aligned_cols=19 Identities=26% Similarity=0.629 Sum_probs=15.4
Q ss_pred ccCcEEEEEECCEEeeeec
Q psy15572 99 GVDTIATIYLNDKELGKTD 117 (144)
Q Consensus 99 GlDT~A~V~LNG~~Vg~~~ 117 (144)
+..++=.|++||+.||..+
T Consensus 55 ~~~~vP~ifi~g~~igg~~ 73 (85)
T PRK11200 55 PVETVPQIFVDQKHIGGCT 73 (85)
T ss_pred CCCcCCEEEECCEEEcCHH
Confidence 4578899999999998643
Done!