RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15572
(144 letters)
>gnl|CDD|225789 COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate
transport and metabolism].
Length = 808
Score = 47.4 bits (113), Expect = 5e-07
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 65 KYRWVSKTGWTYSTEFEVTDKNFLALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYR 124
+Y T Y E A L F VDT+A ++LN +E+ + ++ +
Sbjct: 56 EYDRPIYTNVWYPREVFPP--KVPAGNRIGLYFDAVDTLAKVWLNGQEVLEFQGVYTPFE 113
Query: 125 FDVKDKL--QENESKQNLE 141
DV +S+ +E
Sbjct: 114 VDVTGPYVGGGKDSRITVE 132
>gnl|CDD|217248 pfam02837, Glyco_hydro_2_N, Glycosyl hydrolases family 2, sugar
binding domain. This family contains
beta-galactosidase, beta-mannosidase and
beta-glucuronidase activities and has a jelly-roll fold.
Length = 160
Score = 36.5 bits (85), Expect = 0.002
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 72 TGWTYSTEFEVTDKNFLALPNQFLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVKDKL 131
GW Y F V FL F GVD+ A +++N + +G + + FD+ D L
Sbjct: 62 VGW-YRRTFTVPAD--WKGKRVFLRFEGVDSAAYVWVNGEFVGYHKGGYTPFEFDITDYL 118
Query: 132 QENES 136
+E E
Sbjct: 119 KEGEE 123
>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase;
Provisional.
Length = 278
Score = 31.4 bits (71), Expect = 0.14
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 3 QTISTEATVPGGIY-SDLRRGNILKEDVYYRDNDLKYRWVSKTGWTYSTEF 52
+ + TV G ++ S LRR DV+ ND+ + KT EF
Sbjct: 48 TALENDPTVRGVVFASGLRR------DVFTAGNDIAELYAPKTSAARYAEF 92
Score = 27.2 bits (60), Expect = 3.6
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 56 DVYYRDNDLKYRWVSKTGWTYSTEFEVTDKNFL 88
DV+ ND+ + KT EF +T FL
Sbjct: 68 DVFTAGNDIAELYAPKTSAARYAEFWLTQTTFL 100
>gnl|CDD|219704 pfam08027, Albumin_I, Albumin I. The albumin I protein, a
hormone-like peptide, stimulates kinase activity upon
binding a membrane bound 43 kDa receptor. The structure
of this domain reveals a knottin like fold, comprise of
three beta strands.
Length = 119
Score = 27.9 bits (62), Expect = 1.2
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 6/30 (20%)
Query: 31 YRDNDLKYRWVSKTGWTYSTEFEEEDVYYR 60
Y + D++Y GW +S+ E EDV+++
Sbjct: 88 YPNPDIEY------GWCFSSNSEAEDVFFK 111
>gnl|CDD|219104 pfam06605, Prophage_tail, Prophage endopeptidase tail. This family
is of prophage tail proteins that are probably acting as
endopeptidases.
Length = 318
Score = 27.6 bits (62), Expect = 2.4
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 70 SKTGWTY-------STEFE-VTDKNFLALPNQFLVFHG----VDTIATIYLNDKELGKTD 117
+ TG+TY S EFE +KN L L N+ L G D K++GK
Sbjct: 93 NGTGFTYEIHGSFPSFEFENFGNKNRLELLNEILERFGAEFEPDNKHITIYPLKKIGKQT 152
Query: 118 NMFVRYRFDVKD 129
+RY + +
Sbjct: 153 EFQIRYGHNTNE 164
>gnl|CDD|236673 PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha;
Reviewed.
Length = 1021
Score = 27.7 bits (62), Expect = 2.7
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 97 FHGVDTIATIYLNDKELGKTDNMFVRYRFDVKDKLQENE 135
F GV+T +Y+N + +G + + FD+ ++ +
Sbjct: 132 FDGVETYFEVYVNGQYVGFSKGSRLTAEFDISAMVKTGD 170
>gnl|CDD|215537 PLN02993, PLN02993, lupeol synthase.
Length = 763
Score = 26.8 bits (59), Expect = 5.8
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 12 PGGIYSDLRRGNILKEDVYYRDN---DLK--YRWVSKTGWTYS 49
LRRG+ + R+N D K YR +SK WT S
Sbjct: 434 SDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLS 476
>gnl|CDD|200602 cd10980, CE4_SpCDA1, Putative catalytic domain of
Schizosaccharomyces pombe chitin deacetylase 1 (SpCDA1),
and similar proteins. This family is represented by
Schizosaccharomyces pombe chitin deacetylase 1 (SpCDA1),
encoded by the cda1 gene. The general function of chitin
deacetylase (CDA) is the synthesis of chitosan from
chitin, a polymer of N-acetyl glucosamine, to build up
the proper ascospore wall. The actual function of SpCDA1
might be involved in allantoin hydrolysis. It is likely
an ortholog to bacterial PuuE allantoinase, whereas it
is more distantly related to the CDAs found in other
fungi, such as Saccharomyces cerevisiae and Mucor
rouxii. Those CDAs are similar with rizobial NodB
protein and are not included in this family.
Length = 297
Score = 26.4 bits (58), Expect = 5.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 66 YRWVSKTGWTYSTEFEVTDKNFLAL 90
+RW+ +GW E+E K A+
Sbjct: 109 WRWIDYSGWPVEEEYENIKKAVQAI 133
>gnl|CDD|147936 pfam06044, DRP, Dam-replacing family. Dam-replacing protein (DRP)
is an restriction endonuclease that is flanked by
pseudo-transposable small repeat elements. The
replacement of Dam-methylase by DRP allows phase
variation through slippage-like mechanisms in several
pathogenic isolates of Neisseria meningitidis.
Length = 254
Score = 26.2 bits (58), Expect = 6.1
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 75 TYSTEFEVTDKNFLALPNQFLV 96
TYS ++EV NFL +P F
Sbjct: 100 TYSKDYEV--NNFLLIPKHFFT 119
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.134 0.403
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,339,415
Number of extensions: 653558
Number of successful extensions: 528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 26
Length of query: 144
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 56
Effective length of database: 7,034,450
Effective search space: 393929200
Effective search space used: 393929200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.6 bits)