RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15572
(144 letters)
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides
thetaiotaomicron [TaxId: 818]}
Length = 192
Score = 57.2 bits (137), Expect = 1e-11
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 55 EDVYYRDNDLKYRWVSKTGWTYSTEFEVTDKNFLALPNQFLVFHGVDTIATIYLNDKELG 114
+ +Y N+ K +WV W Y T F V + L L+F G+DT A +YLN L
Sbjct: 43 PNPFYGMNEKKIQWVENEDWEYRTSFIV-SEEQLNRDGIQLIFEGLDTYADVYLNGSLLL 101
Query: 115 KTDNMFVRYRFDVKDKLQEN 134
K DNMFV Y VK L++
Sbjct: 102 KADNMFVGYTLPVKSVLRKG 121
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 184
Score = 49.0 bits (116), Expect = 1e-08
Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 35/131 (26%)
Query: 8 EATVPGGIYSDLRRGNILKEDVYYRDNDLKYRWVSKTGWTYSTEFEEEDVYYRDNDLKYR 67
+ +Y+ L + D +Y N +
Sbjct: 42 PVSSRSTVYAGLLQNGKY-ADPFYSTNMQNVPAAQFSVP--------------------- 79
Query: 68 WVSKTGWTYSTEFEVTDKNFLALPNQFLVFHGVDTIATIYLNDKELGKTDN---MFVRYR 124
W Y T+ V D + +L F GV + A +++N ++ D + R+
Sbjct: 80 ------WWYRTDLNVDDTS----SRTYLDFSGVLSKADVWVNGTKVATKDQVNGAYTRHD 129
Query: 125 FDVKDKLQENE 135
D+ ++
Sbjct: 130 LDITAQVHTGV 140
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp.
c2-2 [TaxId: 192168]}
Length = 216
Score = 42.9 bits (100), Expect = 2e-06
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 1/97 (1%)
Query: 40 WVSKTGWTYSTEFEEEDVYYRDNDLKYRWVSK-TGWTYSTEFEVTDKNFLALPNQFLVFH 98
WV Y Y D + + TG L F
Sbjct: 82 WVMGQDGKYGRPIYTNVQYPFPIDPPHVPDANPTGDFRRRFDVPAQWFESTTAALTLRFD 141
Query: 99 GVDTIATIYLNDKELGKTDNMFVRYRFDVKDKLQENE 135
GV++ +++N +E+G + FDV D L+
Sbjct: 142 GVESRYKVWVNGQEIGVGSGSRLAQEFDVSDALRAGS 178
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli
[TaxId: 562]}
Length = 207
Score = 36.8 bits (84), Expect = 3e-04
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 94 FLVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVKDKLQENE 135
++F GV++ ++ N + +G + + FD+ L+ E
Sbjct: 128 RIIFDGVNSAFHLWCNGRWVGYGQDSRLPSEFDLSAFLRAGE 169
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 204
Score = 36.4 bits (83), Expect = 5e-04
Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 5/104 (4%)
Query: 40 WVSKTGWTYSTEFEEEDVYYRDNDLKYRWVSKTGWTYSTEFEVTDKNFLALPNQ-FLVFH 98
W S D+ D + R W Y E + ++ L + L
Sbjct: 48 WESGPTVDMPVPSSFNDISQ---DWRLRHFVGWVW-YEREVILPERWTQDLRTRVVLRIG 103
Query: 99 GVDTIATIYLNDKELGKTDNMFVRYRFDVKDKLQENESKQNLEL 142
+ A +++N + + + ++ + D+ + +Q L +
Sbjct: 104 SAHSYAIVWVNGVDTLEHEGGYLPFEADISNLVQVGPLPSRLRI 147
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4
and 5 {Penicillium sp. [TaxId: 5081]}
Length = 182
Score = 30.0 bits (67), Expect = 0.076
Identities = 15/97 (15%), Positives = 23/97 (23%), Gaps = 13/97 (13%)
Query: 35 DLKYRWVSKTGWTYSTEFEEEDVYYRDNDLKYRWVSKTGWTYSTEFEVTDKNFLALPNQF 94
D Y S T D Y L +R T F
Sbjct: 36 DHAYTNNSAHSLQTPTSLFASDYGYHTGALLFRGHFTANGKEKTFF-------------V 82
Query: 95 LVFHGVDTIATIYLNDKELGKTDNMFVRYRFDVKDKL 131
G +I++N+ +G + + L
Sbjct: 83 QTKGGTAYGHSIWINETYVGSWAGTSINDNNNATYTL 119
>d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting
protein PsbB {Thermosynechococcus elongatus [TaxId:
146786]}
Length = 488
Score = 25.2 bits (55), Expect = 3.8
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 22 GNILKEDVYYRDNDLKYRWVSKTGWTYSTEFEEED 56
++K D+ +R + KY + G T S E +
Sbjct: 373 NGVVKADIPFRRAESKY-SFEQQGVTVSFYGGELN 406
>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga
maritima [TaxId: 2336]}
Length = 338
Score = 24.8 bits (54), Expect = 5.3
Identities = 6/27 (22%), Positives = 8/27 (29%), Gaps = 3/27 (11%)
Query: 101 DTIATIYLN---DKELGKTDNMFVRYR 124
T A I KT +R+
Sbjct: 10 GTPAAIVAWGQLGTAHAKTTYGLLRHS 36
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId:
4513]}
Length = 125
Score = 24.1 bits (52), Expect = 5.8
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 33 DNDLKYRWVSKTGWT 47
D W SK GWT
Sbjct: 35 DASKPLSWRSKYGWT 49
Score = 24.1 bits (52), Expect = 5.8
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 61 DNDLKYRWVSKTGWT 75
D W SK GWT
Sbjct: 35 DASKPLSWRSKYGWT 49
>d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 126
Score = 23.6 bits (51), Expect = 8.2
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 45 GWTYSTEFEEEDVYYRDNDLKYRWVSKTGWTYSTEF 80
GW EF E D Y N+ R+ S + Y +
Sbjct: 37 GWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRY 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.134 0.403
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 559,325
Number of extensions: 25893
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 20
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.2 bits)