RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15574
         (105 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 71.6 bits (175), Expect = 1e-16
 Identities = 32/80 (40%), Positives = 47/80 (58%)

Query: 10  HYYLSNERSGPNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCL 69
             Y        +FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    
Sbjct: 378 DIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPIC 437

Query: 70  QLVEGKPNGLLCVLDDQAKV 89
           +L+E KP GL+ +LD+   +
Sbjct: 438 ELIEKKPIGLISLLDEACLI 457


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 68.6 bits (167), Expect = 1e-15
 Identities = 32/76 (42%), Positives = 44/76 (57%)

Query: 17  RSGPNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 76
               +FEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP
Sbjct: 421 FDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKP 480

Query: 77  NGLLCVLDDQAKVNLA 92
            G+  +L+++     A
Sbjct: 481 MGIFSILEEECMFPKA 496


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 67.0 bits (163), Expect = 5e-15
 Identities = 34/75 (45%), Positives = 45/75 (60%)

Query: 18  SGPNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 77
              +FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP 
Sbjct: 420 DFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPM 479

Query: 78  GLLCVLDDQAKVNLA 92
           G+L +L+++     A
Sbjct: 480 GILSILEEECMFPKA 494


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 66.3 bits (161), Expect = 9e-15
 Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 10  HYYLSNERSGPNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLC 68
                      +FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C
Sbjct: 386 DIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPC 445

Query: 69  LQLVEG--KPNGLLCVLDDQAKVNLAQ 93
           ++L+E    P G+L +LD++     A 
Sbjct: 446 IELIERPTNPPGVLALLDEECWFPKAT 472


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 64.8 bits (157), Expect = 3e-14
 Identities = 39/71 (54%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 20  PNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 79
            +FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  G+
Sbjct: 385 NSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGV 443

Query: 80  LCVLDDQAKVN 90
           L +LD++ K+ 
Sbjct: 444 LDLLDEECKMP 454


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 60.5 bits (146), Expect = 8e-13
 Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 2/69 (2%)

Query: 20  PNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPN 77
            +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G +P 
Sbjct: 417 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 476

Query: 78  GLLCVLDDQ 86
           G+L +LD+Q
Sbjct: 477 GILALLDEQ 485


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 26.0 bits (57), Expect = 1.1
 Identities = 12/75 (16%), Positives = 16/75 (21%), Gaps = 26/75 (34%)

Query: 17  RSGPNFEQLCIN--------------------------YANEHLQYYFNQHVFQYEQEEY 50
           R G N  Q+ +N                          Y       +  Q  F+      
Sbjct: 341 RLGVNHHQIPVNAPKCPFHNYHRDGAMRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSI 400

Query: 51  NKEGIRWRHIEFSDN 65
                 W H E  D 
Sbjct: 401 EGAADHWNHREDEDY 415


>d3boea1 c.154.1.1 (A:224-432) Cadmium-specific carbonic anhydrase
          CdCA1 {Thalassiosira weissflogii [TaxId: 67004]}
          Length = 209

 Score = 23.7 bits (51), Expect = 5.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 57 WRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKVNLAQG 94
          W     +D ++  QLV+ +P G+L  +D +   N   G
Sbjct: 15 WDAEIVTDASMAGQLVDVRPEGILKCVDGRGSDNTRMG 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0592    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 405,204
Number of extensions: 16716
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 14
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)