BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15576
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T9G|R Chain R, Structure Of The Human Mcad:etf Complex
pdb|2A1T|R Chain R, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1U|A Chain A, Crystal Structure Of The Human Etf E165betaa Mutant
Length = 333
Score = 116 bits (290), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 57/59 (96%)
Query: 50 PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108
PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQV+DYG+VADLFK VPE+TE L
Sbjct: 272 PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEIL 330
>pdb|1EFV|A Chain A, Three-Dimensional Structure Of Human Electron Transfer
Flavoprotein To 2.1 A Resolution
Length = 315
Score = 116 bits (290), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 57/59 (96%)
Query: 50 PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108
PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQV+DYG+VADLFK VPE+TE L
Sbjct: 254 PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEIL 312
>pdb|1EFP|A Chain A, Electron Transfer Flavoprotein (Etf) From Paracoccus
Denitrificans
pdb|1EFP|C Chain C, Electron Transfer Flavoprotein (Etf) From Paracoccus
Denitrificans
Length = 307
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 53/59 (89%)
Query: 50 PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108
PELY+AVGISGAIQHLAGMKDSK IVAINKD EAPIFQ++DYGLV DLF VPELT KL
Sbjct: 249 PELYVAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL 307
>pdb|3CLS|D Chain D, Crystal Structure Of The R236c Mutant Of Etf From
Methylophilus Methylotrophus
Length = 321
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 44/58 (75%)
Query: 51 ELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108
+LY+A+GISG+IQH+AGMK TI+A+N DP A IF ++ YG+VAD+F EL +L
Sbjct: 262 KLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL 319
>pdb|1O94|D Chain D, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|F Chain F, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|D Chain D, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|F Chain F, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O96|B Chain B, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|D Chain D, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|F Chain F, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|Z Chain Z, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O97|D Chain D, Structure Of Electron Transferring Flavoprotein From
Methylophilus Methylotrophus, Recognition Loop Removed
By Limited Proteolysis
Length = 320
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 44/58 (75%)
Query: 51 ELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108
+LY+A+GISG+IQH+AGMK TI+A+N DP A IF ++ YG+VAD+F EL +L
Sbjct: 261 KLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL 318
>pdb|3CLU|D Chain D, Crystal Structure Of The R236k Mutant From Methylophilus
Methylotrophus Etf
Length = 321
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 44/58 (75%)
Query: 51 ELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108
+LY+A+GISG+IQH+AGMK TI+A+N DP A IF ++ YG+VAD+F EL +L
Sbjct: 262 KLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL 319
>pdb|3CLT|D Chain D, Crystal Structure Of The R236e Mutant Of Methylophilus
Methylotrophus Etf
Length = 321
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 44/58 (75%)
Query: 51 ELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108
+LY+A+GISG+IQH+AGMK TI+A+N DP A IF ++ YG+VAD+F EL +L
Sbjct: 262 KLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL 319
>pdb|3CLR|D Chain D, Crystal Structure Of The R236a Etf Mutant From M.
Methylotrophus
Length = 321
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 44/58 (75%)
Query: 51 ELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108
+LY+A+GISG+IQH+AGMK TI+A+N DP A IF ++ YG+VAD+F EL +L
Sbjct: 262 KLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL 319
>pdb|1P4E|C Chain C, Flpe W330f Mutant-Dna Holliday Junction Complex
pdb|1P4E|D Chain D, Flpe W330f Mutant-Dna Holliday Junction Complex
Length = 429
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 1 MNKWLRNSNHKVLQITQTYNSFSQPHYPKLLTVQIAETYISALKASQLIPELYIAVGISG 60
++++LRNS + ++ +T NS S +LL + +Y ALK + P I G
Sbjct: 244 LDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKS 303
Query: 61 AI-QHL 65
I +HL
Sbjct: 304 HIGRHL 309
>pdb|1P4E|A Chain A, Flpe W330f Mutant-Dna Holliday Junction Complex
pdb|1P4E|B Chain B, Flpe W330f Mutant-Dna Holliday Junction Complex
Length = 429
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 1 MNKWLRNSNHKVLQITQTYNSFSQPHYPKLLTVQIAETYISALKASQLIPELYIAVGISG 60
++++LRNS + ++ +T NS S +LL + +Y ALK + P I G
Sbjct: 244 LDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKS 303
Query: 61 AI-QHL 65
I +HL
Sbjct: 304 HIGRHL 309
>pdb|1E6Y|B Chain B, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
pdb|1E6Y|E Chain E, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
Length = 433
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 63 QHLAGMKDSKTIVAINKDPEAPIFQV-SDYGLVADLFKAVPELTEKL 108
+H G A+ D +F + S GL+ D+F A+PE E +
Sbjct: 380 RHSRGFAIPCVCAAVALDAGTQMFSIESTSGLIGDVFGAIPEFREPI 426
>pdb|1M6X|C Chain C, Flpe-Holliday Junction Complex
pdb|1M6X|D Chain D, Flpe-Holliday Junction Complex
Length = 423
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 1 MNKWLRNSNHKVLQITQTYNSFSQPHYPKLLTVQIAETYISALKASQLIPELYIAVGISG 60
++++LRNS + ++ +T NS S +LL + +Y ALK + P I G
Sbjct: 245 LDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKS 304
Query: 61 AI-QHL 65
I +HL
Sbjct: 305 HIGRHL 310
>pdb|1M6X|A Chain A, Flpe-Holliday Junction Complex
pdb|1M6X|B Chain B, Flpe-Holliday Junction Complex
Length = 423
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 1 MNKWLRNSNHKVLQITQTYNSFSQPHYPKLLTVQIAETYISALKASQLIPELYIAVGISG 60
++++LRNS + ++ +T NS S +LL + +Y ALK + P I G
Sbjct: 245 LDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKS 304
Query: 61 AI-QHL 65
I +HL
Sbjct: 305 HIGRHL 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,004,452
Number of Sequences: 62578
Number of extensions: 98498
Number of successful extensions: 310
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 21
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)