Query psy15576
Match_columns 108
No_of_seqs 133 out of 933
Neff 3.7
Searched_HMMs 46136
Date Sat Aug 17 00:49:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2025 FixB Electron transfer 100.0 2.2E-46 4.7E-51 305.1 7.0 104 4-108 196-310 (313)
2 KOG3954|consensus 100.0 2.6E-44 5.7E-49 293.1 6.2 102 6-108 221-333 (336)
3 PRK03363 fixB putative electro 100.0 3.9E-44 8.4E-49 290.6 6.0 101 6-108 198-311 (313)
4 PRK11916 electron transfer fla 100.0 5.5E-43 1.2E-47 283.8 6.1 101 6-108 197-310 (312)
5 PLN00022 electron transfer fla 100.0 4.7E-43 1E-47 288.7 5.8 101 6-108 240-352 (356)
6 PF00766 ETF_alpha: Electron t 99.9 3.4E-23 7.3E-28 143.3 2.4 65 6-72 10-86 (86)
7 cd01408 SIRT1 SIRT1: Eukaryoti 95.9 0.012 2.6E-07 45.9 4.2 56 49-104 175-235 (235)
8 PTZ00408 NAD-dependent deacety 95.4 0.029 6.3E-07 44.3 4.9 59 49-108 172-235 (242)
9 PRK14138 NAD-dependent deacety 95.4 0.032 7E-07 43.8 5.1 59 49-108 178-241 (244)
10 PRK00481 NAD-dependent deacety 95.4 0.031 6.7E-07 43.3 4.9 58 50-108 178-240 (242)
11 cd01412 SIRT5_Af1_CobB SIRT5_A 93.6 0.18 3.8E-06 38.5 5.2 56 49-105 164-224 (224)
12 PRK05333 NAD-dependent deacety 93.0 0.23 5E-06 39.7 5.3 57 50-108 215-277 (285)
13 PF00205 TPP_enzyme_M: Thiamin 90.8 0.6 1.3E-05 32.4 4.7 55 50-104 78-137 (137)
14 PRK06466 acetolactate synthase 90.5 0.24 5.1E-06 42.5 2.9 59 49-107 272-334 (574)
15 TIGR00118 acolac_lg acetolacta 89.4 0.43 9.3E-06 40.6 3.6 97 10-108 209-330 (558)
16 PRK06546 pyruvate dehydrogenas 89.4 0.42 9E-06 41.3 3.5 36 73-108 286-322 (578)
17 COG0846 SIR2 NAD-dependent pro 89.0 0.22 4.7E-06 40.1 1.5 62 46-108 179-245 (250)
18 PRK08978 acetolactate synthase 87.8 0.61 1.3E-05 39.6 3.5 59 49-107 262-324 (548)
19 PRK07418 acetolactate synthase 87.1 0.72 1.6E-05 40.1 3.6 60 49-108 290-353 (616)
20 PRK07524 hypothetical protein; 87.0 0.94 2E-05 38.4 4.2 60 49-108 263-328 (535)
21 PRK07282 acetolactate synthase 86.9 0.43 9.3E-06 41.0 2.1 58 50-108 277-339 (566)
22 TIGR00173 menD 2-succinyl-5-en 86.8 2.3 4.9E-05 35.3 6.2 61 47-107 272-335 (432)
23 PTZ00409 Sir2 (Silent Informat 86.8 1.4 3E-05 35.5 4.9 54 49-103 199-258 (271)
24 TIGR01504 glyox_carbo_lig glyo 86.5 1.1 2.3E-05 39.0 4.3 96 10-107 210-331 (588)
25 PRK07789 acetolactate synthase 86.4 1.1 2.4E-05 38.9 4.3 60 49-108 297-360 (612)
26 PRK08322 acetolactate synthase 85.9 1.5 3.2E-05 37.1 4.8 60 49-108 262-324 (547)
27 PRK06112 acetolactate synthase 85.5 1.5 3.2E-05 37.6 4.6 59 49-107 284-345 (578)
28 PRK07979 acetolactate synthase 85.0 1.6 3.4E-05 37.5 4.6 97 10-108 214-335 (574)
29 CHL00099 ilvB acetohydroxyacid 84.2 1.4 3.1E-05 38.0 4.0 60 48-107 282-345 (585)
30 PRK08527 acetolactate synthase 82.3 2.1 4.6E-05 36.7 4.3 60 49-108 269-332 (563)
31 PRK06725 acetolactate synthase 82.0 2.3 5E-05 36.8 4.4 59 50-108 281-343 (570)
32 cd01409 SIRT4 SIRT4: Eukaryoti 81.4 1.7 3.8E-05 34.4 3.2 52 49-101 204-260 (260)
33 PRK08327 acetolactate synthase 80.8 3.1 6.8E-05 35.8 4.8 60 49-108 279-343 (569)
34 PRK08266 hypothetical protein; 80.8 2.3 5E-05 36.0 3.9 59 49-108 263-324 (542)
35 PRK06154 hypothetical protein; 80.8 2.8 6.1E-05 36.2 4.5 38 71-108 303-341 (565)
36 PRK06276 acetolactate synthase 80.0 3.4 7.5E-05 35.6 4.8 59 49-107 269-331 (586)
37 PRK06965 acetolactate synthase 79.8 1.9 4E-05 37.3 3.1 59 49-107 287-350 (587)
38 PRK11269 glyoxylate carboligas 79.5 3.4 7.3E-05 35.7 4.6 59 49-107 270-332 (591)
39 COG0560 SerB Phosphoserine pho 79.4 0.61 1.3E-05 35.8 0.1 101 3-104 87-194 (212)
40 PRK07092 benzoylformate decarb 79.2 2.7 5.9E-05 35.7 3.9 60 49-108 272-335 (530)
41 PRK05858 hypothetical protein; 78.9 3.7 8E-05 35.0 4.6 60 49-108 262-323 (542)
42 PRK08979 acetolactate synthase 78.5 3.3 7.1E-05 35.6 4.2 57 51-107 274-334 (572)
43 TIGR02418 acolac_catab acetola 78.3 4.2 9.2E-05 34.5 4.7 35 73-107 288-323 (539)
44 TIGR02720 pyruv_oxi_spxB pyruv 78.2 3.5 7.5E-05 35.6 4.3 60 49-108 264-325 (575)
45 PRK06048 acetolactate synthase 77.9 4.8 0.0001 34.5 5.0 60 49-108 273-336 (561)
46 TIGR03254 oxalate_oxc oxalyl-C 77.7 4.4 9.6E-05 34.6 4.7 60 49-108 265-329 (554)
47 PRK07064 hypothetical protein; 77.1 3.9 8.4E-05 34.6 4.2 59 49-107 264-325 (544)
48 PRK06882 acetolactate synthase 77.1 4 8.7E-05 34.9 4.3 59 49-107 272-334 (574)
49 PRK06456 acetolactate synthase 76.3 4.7 0.0001 34.5 4.5 59 49-107 273-336 (572)
50 PRK08617 acetolactate synthase 75.7 4.9 0.00011 34.2 4.5 59 49-107 268-329 (552)
51 PRK07710 acetolactate synthase 75.3 5.2 0.00011 34.4 4.5 59 49-107 281-343 (571)
52 PRK09124 pyruvate dehydrogenas 73.2 6 0.00013 33.9 4.4 56 50-107 266-322 (574)
53 PRK08611 pyruvate oxidase; Pro 73.1 6.2 0.00013 34.1 4.5 58 49-108 267-325 (576)
54 PRK08273 thiamine pyrophosphat 73.0 7.8 0.00017 33.6 5.1 36 73-108 296-332 (597)
55 PRK08199 thiamine pyrophosphat 71.7 7.2 0.00016 33.3 4.5 58 49-107 270-335 (557)
56 PRK09107 acetolactate synthase 70.9 6.8 0.00015 34.1 4.3 59 49-107 280-342 (595)
57 PLN02470 acetolactate synthase 70.5 8 0.00017 33.4 4.6 60 49-108 279-342 (585)
58 PF03351 DOMON: DOMON domain; 70.2 4.7 0.0001 27.0 2.5 26 51-80 29-54 (124)
59 PRK08155 acetolactate synthase 69.6 8.2 0.00018 33.0 4.4 96 10-107 219-339 (564)
60 smart00664 DoH Possible catech 67.6 5.4 0.00012 27.8 2.5 35 43-82 20-54 (148)
61 PRK07525 sulfoacetaldehyde ace 66.7 11 0.00025 32.5 4.8 37 72-108 295-332 (588)
62 PF15632 ATPgrasp_Ter: ATP-gra 66.5 5.6 0.00012 33.2 2.8 44 51-94 1-46 (329)
63 TIGR03457 sulphoacet_xsc sulfo 66.2 9.9 0.00022 32.7 4.3 97 10-108 204-328 (579)
64 COG0028 IlvB Thiamine pyrophos 65.9 13 0.00028 32.7 5.0 21 88-108 308-328 (550)
65 PF13180 PDZ_2: PDZ domain; PD 63.2 13 0.00027 23.6 3.4 39 43-81 5-45 (82)
66 TIGR01704 MTA/SAH-Nsdase 5'-me 62.7 16 0.00036 27.8 4.5 37 48-86 65-104 (228)
67 cd01410 SIRT7 SIRT7: Eukaryoti 61.9 15 0.00032 28.2 4.1 47 49-96 155-206 (206)
68 PRK09259 putative oxalyl-CoA d 59.2 19 0.0004 31.0 4.7 60 49-108 272-336 (569)
69 PF06722 DUF1205: Protein of u 59.1 12 0.00025 26.0 2.9 36 47-83 38-87 (97)
70 TIGR03127 RuMP_HxlB 6-phospho 57.4 17 0.00037 26.2 3.6 47 49-96 72-124 (179)
71 cd01413 SIR2_Af2 SIR2_Af2: Arc 54.5 17 0.00037 28.0 3.4 46 49-95 171-221 (222)
72 cd01407 SIR2-fam SIR2 family o 52.3 22 0.00048 27.0 3.7 46 50-96 168-218 (218)
73 cd05005 SIS_PHI Hexulose-6-pho 49.8 26 0.00056 25.4 3.6 46 50-96 76-127 (179)
74 PRK06457 pyruvate dehydrogenas 48.5 40 0.00088 28.8 5.0 55 49-105 259-314 (549)
75 PLN02573 pyruvate decarboxylas 47.2 22 0.00049 30.9 3.3 18 90-108 334-351 (578)
76 PF02006 DUF137: Protein of un 45.7 37 0.00079 26.8 4.0 37 71-107 110-146 (178)
77 PRK13761 hypothetical protein; 44.2 36 0.00079 28.1 3.9 37 71-107 171-207 (248)
78 KOG1185|consensus 41.7 20 0.00044 32.6 2.3 38 70-108 302-341 (571)
79 cd05006 SIS_GmhA Phosphoheptos 41.1 49 0.0011 23.9 3.9 48 48-96 99-153 (177)
80 PF07563 DUF1541: Protein of u 40.8 14 0.0003 24.0 0.8 15 62-76 10-24 (53)
81 cd05710 SIS_1 A subgroup of th 40.2 56 0.0012 22.3 3.9 46 51-97 49-100 (120)
82 PRK11178 uridine phosphorylase 39.8 46 0.00099 26.2 3.8 55 49-106 83-140 (251)
83 PRK11557 putative DNA-binding 39.5 59 0.0013 25.0 4.3 46 49-95 175-226 (278)
84 cd05008 SIS_GlmS_GlmD_1 SIS (S 39.1 27 0.00059 23.2 2.1 48 49-97 46-99 (126)
85 TIGR01161 purK phosphoribosyla 38.2 47 0.001 26.5 3.7 27 73-99 24-50 (352)
86 PF08331 DUF1730: Domain of un 37.4 48 0.001 21.6 3.0 27 82-108 33-59 (78)
87 TIGR01718 Uridine-psphlse urid 36.9 69 0.0015 24.9 4.4 54 49-105 78-134 (245)
88 PRK10892 D-arabinose 5-phospha 36.6 69 0.0015 25.3 4.4 45 50-95 95-145 (326)
89 COG1701 Uncharacterized protei 35.9 54 0.0012 27.1 3.7 44 62-107 167-210 (256)
90 cd00296 SIR2 SIR2 superfamily 35.4 56 0.0012 24.2 3.5 48 49-96 169-222 (222)
91 cd02068 radical_SAM_B12_BD B12 35.3 31 0.00068 23.5 2.0 23 85-107 87-109 (127)
92 cd00136 PDZ PDZ domain, also c 34.9 59 0.0013 19.3 3.0 31 51-81 14-44 (70)
93 PRK10832 phosphatidylglyceroph 34.9 9.3 0.0002 29.2 -0.8 23 11-33 54-76 (182)
94 cd05014 SIS_Kpsf KpsF-like pro 33.7 87 0.0019 20.8 3.9 46 50-96 48-99 (128)
95 PRK11382 frlB fructoselysine-6 33.4 30 0.00065 28.1 1.9 48 48-96 90-144 (340)
96 PLN02558 CDP-diacylglycerol-gl 31.9 12 0.00025 29.3 -0.7 24 11-34 60-83 (203)
97 cd00992 PDZ_signaling PDZ doma 31.2 1E+02 0.0022 18.6 3.7 31 51-81 27-57 (82)
98 PF09290 AcetDehyd-dimer: Prok 31.1 37 0.00081 25.7 1.9 39 59-97 49-87 (137)
99 PF04648 MF_alpha: Yeast matin 30.8 25 0.00054 17.0 0.6 11 3-13 2-12 (13)
100 PF10419 TFIIIC_sub6: TFIIIC s 30.0 37 0.0008 19.8 1.4 24 78-101 5-28 (35)
101 TIGR01142 purT phosphoribosylg 29.9 71 0.0015 25.5 3.5 27 73-99 24-50 (380)
102 TIGR01491 HAD-SF-IB-PSPlk HAD- 29.4 24 0.00053 24.8 0.7 92 4-96 91-189 (201)
103 KOG1617|consensus 29.1 19 0.00042 29.6 0.1 23 11-33 116-138 (243)
104 cd02174 CCT CTP:phosphocholine 29.0 58 0.0012 23.9 2.6 10 72-81 33-42 (150)
105 PRK08300 acetaldehyde dehydrog 28.5 1E+02 0.0022 25.6 4.2 39 58-96 176-214 (302)
106 PF00595 PDZ: PDZ domain (Also 28.0 95 0.0021 19.3 3.2 32 50-81 25-56 (81)
107 PRK09330 cell division protein 27.8 29 0.00062 29.7 0.9 38 53-91 16-59 (384)
108 smart00228 PDZ Domain present 27.5 1.1E+02 0.0025 18.3 3.4 31 50-80 26-56 (85)
109 PLN02476 O-methyltransferase 27.3 56 0.0012 26.7 2.5 58 48-105 117-187 (278)
110 PRK05584 5'-methylthioadenosin 26.6 56 0.0012 24.4 2.3 27 48-76 66-92 (230)
111 TIGR00393 kpsF KpsF/GutQ famil 26.3 50 0.0011 24.9 1.9 48 47-95 44-98 (268)
112 PRK06019 phosphoribosylaminoim 25.8 74 0.0016 25.9 3.0 27 73-99 27-53 (372)
113 PRK05819 deoD purine nucleosid 25.4 60 0.0013 25.0 2.3 29 48-78 80-108 (235)
114 PF12812 PDZ_1: PDZ-like domai 25.0 2E+02 0.0042 19.1 4.4 31 52-83 33-63 (78)
115 PRK06714 S-adenosylhomocystein 24.6 99 0.0021 24.1 3.4 39 47-87 66-107 (236)
116 TIGR00338 serB phosphoserine p 24.6 30 0.00064 25.1 0.4 52 49-104 167-219 (219)
117 TIGR03664 fut_nucase futalosin 24.3 63 0.0014 24.7 2.2 28 48-77 54-81 (222)
118 cd00991 PDZ_archaeal_metallopr 23.9 1.1E+02 0.0025 19.2 3.0 29 53-81 13-41 (79)
119 cd00989 PDZ_metalloprotease PD 23.4 1.7E+02 0.0037 17.6 3.7 30 52-81 14-43 (79)
120 COG2222 AgaS Predicted phospho 23.2 79 0.0017 26.5 2.7 48 51-99 89-142 (340)
121 PF03596 Cad: Cadmium resistan 22.9 14 0.00031 28.7 -1.6 23 44-66 162-189 (191)
122 COG0794 GutQ Predicted sugar p 22.8 1.1E+02 0.0024 24.2 3.4 51 44-94 81-136 (202)
123 PRK05441 murQ N-acetylmuramic 22.7 1.1E+02 0.0024 24.8 3.4 46 51-97 133-184 (299)
124 TIGR00441 gmhA phosphoheptose 22.2 84 0.0018 22.5 2.4 44 51-95 81-130 (154)
125 TIGR00274 N-acetylmuramic acid 21.9 56 0.0012 26.5 1.6 47 48-95 124-177 (291)
126 PRK11302 DNA-binding transcrip 21.4 1.2E+02 0.0026 23.1 3.3 47 48-96 173-226 (284)
127 PRK06026 5'-methylthioadenosin 21.4 92 0.002 24.5 2.6 36 49-88 60-98 (212)
128 TIGR00779 cad cadmium resistan 21.1 52 0.0011 25.9 1.2 23 44-66 162-189 (193)
129 TIGR03394 indol_phenyl_DC indo 20.9 44 0.00095 28.8 0.8 18 89-107 312-329 (535)
130 PRK14697 bifunctional 5'-methy 20.8 88 0.0019 24.1 2.4 29 47-77 66-94 (233)
131 TIGR03468 HpnG hopanoid-associ 20.7 89 0.0019 23.7 2.3 28 47-76 43-70 (212)
132 TIGR01135 glmS glucosamine--fr 20.4 1.2E+02 0.0026 26.4 3.4 48 49-97 338-391 (607)
133 KOG4441|consensus 20.2 91 0.002 27.6 2.6 48 12-63 394-441 (571)
134 PRK09288 purT phosphoribosylgl 20.2 99 0.0021 24.8 2.6 25 73-97 37-61 (395)
No 1
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.2e-46 Score=305.14 Aligned_cols=104 Identities=49% Similarity=0.691 Sum_probs=95.1
Q ss_pred ceeecCCccccccccccccccccchhhhhhc-----------cccceeeeccCeeeCcceEEeeccchhhHhhhccCCCC
Q psy15576 4 WLRNSNHKVLQITQTYNSFSQPHYPKLLTVQ-----------IAETYISALKASQLIPELYIAVGISGAIQHLAGMKDSK 72 (108)
Q Consensus 4 ~~~~s~~r~~~~~~~~~~~~~pva~kL~a~~-----------i~~~~igg~SGktV~P~lYia~GISGA~QH~~Gm~~s~ 72 (108)
+.=+|||||+++.|||+. +.|+||+||+.. ++++++.|+|||+|+|+||||||||||+||++||++||
T Consensus 196 ~iVVsgGRG~gs~enf~~-i~~LA~~LGa~VGaSRp~vd~gw~p~d~QVGqTGk~V~P~LYIA~GISGAiQHlaGm~~Sk 274 (313)
T COG2025 196 KIVVSGGRGLGSKENFKL-LEELADVLGAAVGASRPAVDAGWMPNDRQVGQTGKTVAPKLYIALGISGAIQHLAGMKDSK 274 (313)
T ss_pred eEEEEcCcccCChhhhHH-HHHHHHHhCceeeccHHHHhcCCCCccceecCCCcEecccEEEEEecccHHHHHhhcccCc
Confidence 345899999999999966 799999999982 44444455999999999999999999999999999999
Q ss_pred eEEEecCCCCCCcccccCeeEeeeHHHHHHHHHhhC
Q psy15576 73 TIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 73 ~IIAIN~Dp~ApIf~~ADygiVgD~~evlp~Li~~l 108 (108)
+|||||+|||||||++||||||||+++++|+|+++|
T Consensus 275 ~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l 310 (313)
T COG2025 275 VIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEAL 310 (313)
T ss_pred EEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHH
Confidence 999999999999999999999999999999999975
No 2
>KOG3954|consensus
Probab=100.00 E-value=2.6e-44 Score=293.13 Aligned_cols=102 Identities=57% Similarity=0.784 Sum_probs=98.3
Q ss_pred eecCCccccccccccccccccchhhhhhc-----------cccceeeeccCeeeCcceEEeeccchhhHhhhccCCCCeE
Q psy15576 6 RNSNHKVLQITQTYNSFSQPHYPKLLTVQ-----------IAETYISALKASQLIPELYIAVGISGAIQHLAGMKDSKTI 74 (108)
Q Consensus 6 ~~s~~r~~~~~~~~~~~~~pva~kL~a~~-----------i~~~~igg~SGktV~P~lYia~GISGA~QH~~Gm~~s~~I 74 (108)
-+||||+|.++|||| +++|+||||||+. ++++++.|+|||.|+|+||||+|||||+||++||++||+|
T Consensus 221 VVsGGR~LKs~enFk-ll~~LAdklgaavGAtRaaVDaGyvpNdlQiGQTGKIVAPeLYiAvGisGAIQHLAGmKDSKvI 299 (336)
T KOG3954|consen 221 VVSGGRGLKSGENFK-LLYDLADKLGAAVGATRAAVDAGYVPNDLQIGQTGKIVAPELYIAVGISGAIQHLAGMKDSKVI 299 (336)
T ss_pred EEECCcccCCcccce-ehHHHHHHhchhhchhhhhhccCcCCCccccccccceeccceEEEEeccHHHHHhhcCccceEE
Confidence 379999999999996 9999999999982 8999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCcccccCeeEeeeHHHHHHHHHhhC
Q psy15576 75 VAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 75 IAIN~Dp~ApIf~~ADygiVgD~~evlp~Li~~l 108 (108)
||||+|||||||++||||+|||+++++|||+|+|
T Consensus 300 vAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL 333 (336)
T KOG3954|consen 300 VAINKDPDAPIFQVADYGLVGDLFKIVPELTEKL 333 (336)
T ss_pred EEecCCCCCCceeeecccchhhHHHHhHHHHHhc
Confidence 9999999999999999999999999999999986
No 3
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=100.00 E-value=3.9e-44 Score=290.64 Aligned_cols=101 Identities=41% Similarity=0.602 Sum_probs=93.3
Q ss_pred eecCCccccccccccccccccchhhhhhc-------------cccceeeeccCeeeCcceEEeeccchhhHhhhccCCCC
Q psy15576 6 RNSNHKVLQITQTYNSFSQPHYPKLLTVQ-------------IAETYISALKASQLIPELYIAVGISGAIQHLAGMKDSK 72 (108)
Q Consensus 6 ~~s~~r~~~~~~~~~~~~~pva~kL~a~~-------------i~~~~igg~SGktV~P~lYia~GISGA~QH~~Gm~~s~ 72 (108)
=+|+||||++-||| ++.+.+|+.||++- +.+++|| +|||+|+|+||||||||||+||++||++|+
T Consensus 198 VVsgGRG~~~~E~~-~l~eeLA~~LGaavg~SRp~vd~~gW~p~~~QIG-qTGk~V~P~lYiA~GISGaiQH~~Gm~~s~ 275 (313)
T PRK03363 198 VVSVGRGIGSKENI-ALAEQLCKAIGAELACSRPVAENEKWMEHERYVG-ISNLMLKPELYLAVGISGQIQHMVGANASQ 275 (313)
T ss_pred EEEcCCCCCCHHHH-HHHHHHHHHhCCeEEecHHHHccCCCCCHHheec-CCCCCcCccEEEEEccccHHHHHhhcccCC
Confidence 37999999999999 67799999999872 3456666 999999999999999999999999999999
Q ss_pred eEEEecCCCCCCcccccCeeEeeeHHHHHHHHHhhC
Q psy15576 73 TIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 73 ~IIAIN~Dp~ApIf~~ADygiVgD~~evlp~Li~~l 108 (108)
+|||||+||+||||++||||||||++||||+|++++
T Consensus 276 ~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l 311 (313)
T PRK03363 276 TIFAINKDKNAPIFQYADYGIVGDAVKILPALTAAL 311 (313)
T ss_pred EEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHh
Confidence 999999999999999999999999999999999875
No 4
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=100.00 E-value=5.5e-43 Score=283.84 Aligned_cols=101 Identities=39% Similarity=0.587 Sum_probs=93.4
Q ss_pred eecCCccccccccccccccccchhhhhhc-------------cccceeeeccCeeeCcceEEeeccchhhHhhhccCCCC
Q psy15576 6 RNSNHKVLQITQTYNSFSQPHYPKLLTVQ-------------IAETYISALKASQLIPELYIAVGISGAIQHLAGMKDSK 72 (108)
Q Consensus 6 ~~s~~r~~~~~~~~~~~~~pva~kL~a~~-------------i~~~~igg~SGktV~P~lYia~GISGA~QH~~Gm~~s~ 72 (108)
=+|+|||+++.||| ++++.+|+.||+.. ..+++|| +|||+|+|+||||||||||+||++||++|+
T Consensus 197 VV~~GrG~~~~e~~-~~~~~LA~~LGaavG~SRp~vd~~gW~p~~~QIG-qTGk~V~P~lYiA~GISGAiQH~aGm~~s~ 274 (312)
T PRK11916 197 VVGVGRGLAAQDDL-KMVHELAAVLNAEVGCSRPIAEGENWMERERYIG-VSGVLLKSDLYLTLGISGQIQHMVGGNGAK 274 (312)
T ss_pred EEECCCCCCChHHH-HHHHHHHHHhCCEEEecHHHHccCCCCChhcEEC-CCCCCcCccEEEEeccccHHHHHhhcccCC
Confidence 37999999999999 66799999999872 4456666 999999999999999999999999999999
Q ss_pred eEEEecCCCCCCcccccCeeEeeeHHHHHHHHHhhC
Q psy15576 73 TIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 73 ~IIAIN~Dp~ApIf~~ADygiVgD~~evlp~Li~~l 108 (108)
+|||||+||+||||++||||||+|++||+|+|+++|
T Consensus 275 ~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l 310 (312)
T PRK11916 275 VIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQL 310 (312)
T ss_pred EEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHh
Confidence 999999999999999999999999999999999875
No 5
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=100.00 E-value=4.7e-43 Score=288.68 Aligned_cols=101 Identities=55% Similarity=0.769 Sum_probs=93.9
Q ss_pred eecCCccccccccccccccccchhhhhhc------------cccceeeeccCeeeCcceEEeeccchhhHhhhccCCCCe
Q psy15576 6 RNSNHKVLQITQTYNSFSQPHYPKLLTVQ------------IAETYISALKASQLIPELYIAVGISGAIQHLAGMKDSKT 73 (108)
Q Consensus 6 ~~s~~r~~~~~~~~~~~~~pva~kL~a~~------------i~~~~igg~SGktV~P~lYia~GISGA~QH~~Gm~~s~~ 73 (108)
=+|+||||++.||| ++.+.+|+.||+.. ..+++|| +||++|+|+||||||||||+||++||++|++
T Consensus 240 VVsgGRGv~~~en~-~l~eeLA~~LGaavGaSRp~vD~GW~p~~~QIG-qTGk~V~P~lYIA~GISGAiQH~~Gm~~s~~ 317 (356)
T PLN00022 240 VVTGGRGLKSAENF-KMLEKLADKLGGAVGASRAAVDAGFVPNDLQVG-QTGKIVAPELYIAVGISGAIQHLAGMKDSKV 317 (356)
T ss_pred EEECCCccCCHHHH-HHHHHHHHHhCCceeccHHHHhCCCCChHheec-cCCCCcCCcEEEEEecchHHHHHhhcccCCE
Confidence 37999999999999 67799999999872 5566666 9999999999999999999999999999999
Q ss_pred EEEecCCCCCCcccccCeeEeeeHHHHHHHHHhhC
Q psy15576 74 IVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 74 IIAIN~Dp~ApIf~~ADygiVgD~~evlp~Li~~l 108 (108)
|||||+|||||||++||||||||++||+|+|+++|
T Consensus 318 IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~l 352 (356)
T PLN00022 318 IVAINKDADAPIFQVADYGLVADLFEAVPELLEKL 352 (356)
T ss_pred EEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHH
Confidence 99999999999999999999999999999999874
No 6
>PF00766 ETF_alpha: Electron transfer flavoprotein FAD-binding domain; InterPro: IPR014731 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the C-terminal domain of the alpha subunit of both Group I and Group II ETFs.; PDB: 1O96_D 3CLR_D 1O97_D 3CLT_D 3CLU_D 3CLS_D 2A1U_A 2A1T_R 1EFV_A 1EFP_C ....
Probab=99.87 E-value=3.4e-23 Score=143.31 Aligned_cols=65 Identities=35% Similarity=0.465 Sum_probs=46.6
Q ss_pred eecCCccccccccccccccccchhhhhhc------------cccceeeeccCeeeCcceEEeeccchhhHhhhccCCCC
Q psy15576 6 RNSNHKVLQITQTYNSFSQPHYPKLLTVQ------------IAETYISALKASQLIPELYIAVGISGAIQHLAGMKDSK 72 (108)
Q Consensus 6 ~~s~~r~~~~~~~~~~~~~pva~kL~a~~------------i~~~~igg~SGktV~P~lYia~GISGA~QH~~Gm~~s~ 72 (108)
=+++|||+.+.|+| ++++=+|++|||.. ..+++|| +||++|+|+||||||||||+||++||++||
T Consensus 10 VV~~GrG~~~~e~~-~l~~~LA~~lga~vg~SRp~vd~gw~p~~~qIG-~sG~~v~P~lyia~GISGa~qH~~Gi~~s~ 86 (86)
T PF00766_consen 10 VVAGGRGVGSKENF-ELIEELAEALGAAVGASRPVVDAGWIPRERQIG-QSGKTVAPKLYIAFGISGAIQHLAGIKDSK 86 (86)
T ss_dssp EEEE-GGG-STGGC-HHHHHHHHHHT-EEEE-HHHHHTTSS-GGGBBS-TTSB--T-SEEEEES----HHHHTTTTT-S
T ss_pred EEEcCCCCCCHHHH-HHHHHHHHHhCCchhccHHHHhCCCCchhhhcC-CCCcEEeeeeeEeecchhhHHHHhhhhcCC
Confidence 37899999999999 56688888888872 6677777 999999999999999999999999999986
No 7
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=95.91 E-value=0.012 Score=45.91 Aligned_cols=56 Identities=27% Similarity=0.344 Sum_probs=42.5
Q ss_pred CcceEEeeccchhhHhhhcc----CCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHH
Q psy15576 49 IPELYIAVGISGAIQHLAGM----KDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPEL 104 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm----~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~L 104 (108)
+.++.|.+|-|+++.-.+++ +.-..+|.||.+|...- -+.+|+.+-+|+.|++|+|
T Consensus 175 ~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 175 EADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred cCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 47999999999988744432 22245777999986543 1678999999999999986
No 8
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=95.44 E-value=0.029 Score=44.30 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=45.8
Q ss_pred CcceEEeeccchhhHhhhccC-----CCCeEEEecCCCCCCcccccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGISGAIQHLAGMK-----DSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm~-----~s~~IIAIN~Dp~ApIf~~ADygiVgD~~evlp~Li~~l 108 (108)
+.+|.|.+|-|.++.=.+.+- .-..||.||.+|...- ..+|+.+.+++.++||+|.+++
T Consensus 172 ~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~-~~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 172 KTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNY-SQFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred hCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCC-ccCCEEEECCHHHHHHHHHHHH
Confidence 468999999999887555432 2236889999986655 4579999999999999998753
No 9
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=95.43 E-value=0.032 Score=43.78 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=45.5
Q ss_pred CcceEEeeccchhhHhhhcc-----CCCCeEEEecCCCCCCcccccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGISGAIQHLAGM-----KDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm-----~~s~~IIAIN~Dp~ApIf~~ADygiVgD~~evlp~Li~~l 108 (108)
+.++.|.+|-|.++.=...+ +....||.||.+|. ++=+.||+.+.+|+.|++|+|++.+
T Consensus 178 ~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t-~~d~~~~~~i~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 178 KASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGET-PLDDIATLKYNMDVVEFANRVMSEG 241 (244)
T ss_pred cCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCC-CCCcceeEEEeCCHHHHHHHHHHHh
Confidence 45889999999887655543 23346889999855 4456789999999999999998753
No 10
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=95.42 E-value=0.031 Score=43.33 Aligned_cols=58 Identities=31% Similarity=0.480 Sum_probs=44.4
Q ss_pred cceEEeeccchhhHhhhccC-----CCCeEEEecCCCCCCcccccCeeEeeeHHHHHHHHHhhC
Q psy15576 50 PELYIAVGISGAIQHLAGMK-----DSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 50 P~lYia~GISGA~QH~~Gm~-----~s~~IIAIN~Dp~ApIf~~ADygiVgD~~evlp~Li~~l 108 (108)
.++.|.+|-|.++.-...+- .-..+|.||.+|. ++-..+|+.+-+|+.|+||+|.++|
T Consensus 178 ~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~-~~~~~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 178 ADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPT-PLDSLFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred CCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCC-CCCCccCEEEECCHHHHHHHHHHHh
Confidence 48999999998874333322 2335999999985 5555689999999999999998764
No 11
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=93.58 E-value=0.18 Score=38.45 Aligned_cols=56 Identities=23% Similarity=0.572 Sum_probs=42.1
Q ss_pred CcceEEeeccchhhHhhhcc-----CCCCeEEEecCCCCCCcccccCeeEeeeHHHHHHHHH
Q psy15576 49 IPELYIAVGISGAIQHLAGM-----KDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELT 105 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm-----~~s~~IIAIN~Dp~ApIf~~ADygiVgD~~evlp~Li 105 (108)
+.++.|-+|-|+.++=..-+ +.-..+|.||.+|. ++-+.+|+.+-+|+.|+||+|+
T Consensus 164 ~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~-~~~~~~~~~i~g~~~~~l~~l~ 224 (224)
T cd01412 164 KADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPT-PLSPIADFAFRGKAGEVLPALL 224 (224)
T ss_pred cCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCC-CCCCcCCEEEECCHHHHHHHhC
Confidence 67899999999876522221 12236888999976 4448899999999999999874
No 12
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=93.04 E-value=0.23 Score=39.69 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=43.4
Q ss_pred cceEEeeccchhhHh------hhccCCCCeEEEecCCCCCCcccccCeeEeeeHHHHHHHHHhhC
Q psy15576 50 PELYIAVGISGAIQH------LAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 50 P~lYia~GISGA~QH------~~Gm~~s~~IIAIN~Dp~ApIf~~ADygiVgD~~evlp~Li~~l 108 (108)
-++.|.+|-|..+.= ++--+++ .+|.||.+| .+.=+.+|+.+-+|+.|+||.|.+.|
T Consensus 215 ~DlllvvGTSl~V~p~~~~~~~a~~~g~-~~i~IN~~~-t~~~~~~~~~i~g~~~evL~~l~~~l 277 (285)
T PRK05333 215 ADAVLVVGSSLMVYSGYRFCVWAAQQGK-PIAALNLGR-TRADPLLTLKVEASCAQALAALVARL 277 (285)
T ss_pred CCEEEEECcCceecchhhhHHHHHHCCC-eEEEECCCC-CCCCcceeEEEeCCHHHHHHHHHHHh
Confidence 578888999998751 1222334 899999985 45656679999999999999998764
No 13
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=90.76 E-value=0.6 Score=32.37 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=39.4
Q ss_pred cceEEeeccchhhHhhhc----cCCCCeEEEecCCCCCCcccc-cCeeEeeeHHHHHHHH
Q psy15576 50 PELYIAVGISGAIQHLAG----MKDSKTIVAINKDPEAPIFQV-SDYGLVADLFKAVPEL 104 (108)
Q Consensus 50 P~lYia~GISGA~QH~~G----m~~s~~IIAIN~Dp~ApIf~~-ADygiVgD~~evlp~L 104 (108)
.++.|++|.+=....+.| ....+.+|-||.||..-=-.. .|+.+++|+.++|.+|
T Consensus 78 aDlvl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 78 ADLVLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp SSEEEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred CCEEEEECCCCccccccccccccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 478999996633323333 222238999999997665444 8999999999999886
No 14
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.46 E-value=0.24 Score=42.48 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=34.4
Q ss_pred CcceEEeeccchhhHhhhc---cCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhh
Q psy15576 49 IPELYIAVGISGAIQHLAG---MKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G---m~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~ 107 (108)
..++.|++|-+=....+.+ ......+|-||.||..-= ...+|..+++|+.++|++|+++
T Consensus 272 ~aD~il~vG~~~~~~~~~~~~~~~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~ 334 (574)
T PRK06466 272 HADVILAVGARFDDRVTNGPAKFCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAI 334 (574)
T ss_pred hCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHH
Confidence 3467777775422111111 112234666777765311 1136999999999999998764
No 15
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=89.45 E-value=0.43 Score=40.61 Aligned_cols=97 Identities=19% Similarity=0.111 Sum_probs=54.3
Q ss_pred Cccccccccccccccccchhhhhhc---------ccc---ceeeeccCee---------eCcceEEeeccchhhHhhhc-
Q psy15576 10 HKVLQITQTYNSFSQPHYPKLLTVQ---------IAE---TYISALKASQ---------LIPELYIAVGISGAIQHLAG- 67 (108)
Q Consensus 10 ~r~~~~~~~~~~~~~pva~kL~a~~---------i~~---~~igg~SGkt---------V~P~lYia~GISGA~QH~~G- 67 (108)
|.+....+-+ +.++-+|++|++.. ++| .|+| +.|.. -.+++.|++|-+=.-..+.+
T Consensus 209 G~g~~~~~a~-~~l~~lae~l~~pv~tt~~~kg~~~e~hp~~~G-~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~ 286 (558)
T TIGR00118 209 GGGVIIAGAS-EELKELAERIQIPVTTTLMGLGSFPEDHPLSLG-MLGMHGTKTANLAVHECDLIIAVGARFDDRVTGNL 286 (558)
T ss_pred CCCccccchH-HHHHHHHHHhCCCEEEccccCCCCCCCCccccC-CCCCCCCHHHHHHHHhCCEEEEECCCCCccccCch
Confidence 3344444445 33477888888752 332 2444 22321 23678888885422221111
Q ss_pred --cCCCCeEEEecCCCCCCcc-cccCeeEeeeHHHHHHHHHhhC
Q psy15576 68 --MKDSKTIVAINKDPEAPIF-QVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 68 --m~~s~~IIAIN~Dp~ApIf-~~ADygiVgD~~evlp~Li~~l 108 (108)
...-..+|-||.|+...=. ...|..+++|+.++|+.|++.+
T Consensus 287 ~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 330 (558)
T TIGR00118 287 AKFAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKL 330 (558)
T ss_pred hhcCCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhh
Confidence 1112347777887743111 1358999999999999998753
No 16
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=89.35 E-value=0.42 Score=41.27 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=25.1
Q ss_pred eEEEecCCCCCCcc-cccCeeEeeeHHHHHHHHHhhC
Q psy15576 73 TIVAINKDPEAPIF-QVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 73 ~IIAIN~Dp~ApIf-~~ADygiVgD~~evlp~Li~~l 108 (108)
.+|-||.|++.--- ...|+.|++|+..+|++|.+.|
T Consensus 286 ~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L 322 (578)
T PRK06546 286 RTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLV 322 (578)
T ss_pred cEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhh
Confidence 35556666653211 1468999999999999998754
No 17
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=89.05 E-value=0.22 Score=40.11 Aligned_cols=62 Identities=23% Similarity=0.303 Sum_probs=49.1
Q ss_pred eeeCcceEEeeccchhhHhhhccCC-----CCeEEEecCCCCCCcccccCeeEeeeHHHHHHHHHhhC
Q psy15576 46 SQLIPELYIAVGISGAIQHLAGMKD-----SKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 46 ktV~P~lYia~GISGA~QH~~Gm~~-----s~~IIAIN~Dp~ApIf~~ADygiVgD~~evlp~Li~~l 108 (108)
..=..++.|.+|-||.+.=.+++.. -..+|.||. +.-++-..+|+-+.+++.+++|.|.+.+
T Consensus 179 ~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~-~~~~~~~~~d~~i~~~a~~~~~~l~~~~ 245 (250)
T COG0846 179 ALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINL-EPTRLDPIADEVIRGDAGEVLPLLLEEL 245 (250)
T ss_pred HhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECC-CcccCcchhHHHHHhhHHHHHHHHHHHh
Confidence 3456789999999998765555432 236888999 6678889999999999999999998753
No 18
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=87.79 E-value=0.61 Score=39.61 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=37.0
Q ss_pred CcceEEeeccchhhHhhhc---cCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhh
Q psy15576 49 IPELYIAVGISGAIQHLAG---MKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G---m~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~ 107 (108)
.+++.|++|-+=....+.+ ......+|-||.||+--= ....|+.+++|+.+++++|.+.
T Consensus 262 ~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~ 324 (548)
T PRK08978 262 ECDLLIAVGARFDDRVTGKLNTFAPHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQP 324 (548)
T ss_pred hCCEEEEEcCCCCccccCCccccCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHh
Confidence 5778888886522222211 122235777888775210 1236999999999999998764
No 19
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=87.07 E-value=0.72 Score=40.06 Aligned_cols=60 Identities=23% Similarity=0.230 Sum_probs=36.0
Q ss_pred CcceEEeeccchhhHhh---hccCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGISGAIQHL---AGMKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~---~Gm~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~l 108 (108)
..+|.|++|-+=..-.+ ........+|-||.||.-.= ....|+.+++|+.++|++|++++
T Consensus 290 ~aDlvL~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l 353 (616)
T PRK07418 290 ECDLLIAVGARFDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERS 353 (616)
T ss_pred hCCEEEEEcCCCCccccCChhhcCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhh
Confidence 45777777754110000 01222334677787774211 11479999999999999998753
No 20
>PRK07524 hypothetical protein; Provisional
Probab=87.01 E-value=0.94 Score=38.37 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=39.0
Q ss_pred CcceEEeeccc-hhhH----hhhccCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGIS-GAIQ----HLAGMKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GIS-GA~Q----H~~Gm~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~l 108 (108)
..+|.|++|-+ +-.. +.........+|-||.||+..- .-..|..|++|+.++|++|++.+
T Consensus 263 ~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l 328 (535)
T PRK07524 263 EADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARL 328 (535)
T ss_pred hCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhc
Confidence 56888888855 1111 1112333345888888886422 11479999999999999998754
No 21
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=86.86 E-value=0.43 Score=41.00 Aligned_cols=58 Identities=21% Similarity=0.226 Sum_probs=33.3
Q ss_pred cceEEeeccchhhHhhhc---cCCCCeEEEecCCCCCCcc--cccCeeEeeeHHHHHHHHHhhC
Q psy15576 50 PELYIAVGISGAIQHLAG---MKDSKTIVAINKDPEAPIF--QVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 50 P~lYia~GISGA~QH~~G---m~~s~~IIAIN~Dp~ApIf--~~ADygiVgD~~evlp~Li~~l 108 (108)
.++.|++|-+=.-..+.+ ......+|=||.||.- |= -..|+.+++|+..+|++|++++
T Consensus 277 aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~-i~~~~~~~~~i~~D~~~~L~~L~~~l 339 (566)
T PRK07282 277 ADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAE-IGKIIKTDIPVVGDAKKALQMLLAEP 339 (566)
T ss_pred CCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHH-hCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 367777775521111100 1112346667777642 11 1258999999999999998753
No 22
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=86.79 E-value=2.3 Score=35.32 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=41.7
Q ss_pred eeCcceEEeeccc-hhhHhhhcc-CCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhh
Q psy15576 47 QLIPELYIAVGIS-GAIQHLAGM-KDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 47 tV~P~lYia~GIS-GA~QH~~Gm-~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~ 107 (108)
.+.++|.|++|-. +.......+ .....+|-|+.||...= +...|.+|++|+.+++.+|++.
T Consensus 272 ~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~ 335 (432)
T TIGR00173 272 ELQPDLVIRFGGPPVSKRLRQWLARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGL 335 (432)
T ss_pred hCCCCEEEEeCCCcchhHHHHHHhCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhc
Confidence 4479999999965 222222222 22346888998886421 2245999999999999998765
No 23
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=86.79 E-value=1.4 Score=35.48 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=41.8
Q ss_pred CcceEEeeccchhhHhhhccC-----CCCeEEEecCCCCCCcc-cccCeeEeeeHHHHHHH
Q psy15576 49 IPELYIAVGISGAIQHLAGMK-----DSKTIVAINKDPEAPIF-QVSDYGLVADLFKAVPE 103 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm~-----~s~~IIAIN~Dp~ApIf-~~ADygiVgD~~evlp~ 103 (108)
+.++.|.+|-|+.++-.+++- .-..||.||.+|. +.- ..||+.+.+++.|+++.
T Consensus 199 ~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t-~~~~~~~d~~i~~~~~~~~~~ 258 (271)
T PTZ00409 199 KCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKT-YITNRISDYHVRAKFSELAQI 258 (271)
T ss_pred cCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCC-CCCCccccEEEECcHHHHHHH
Confidence 458899999999987666543 2345889999987 443 46899999999999963
No 24
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=86.54 E-value=1.1 Score=38.98 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=57.6
Q ss_pred Cccccccccccccccccchhhhhhc---------cccc---eeeeccCee----------eCcceEEeeccchhhHhhhc
Q psy15576 10 HKVLQITQTYNSFSQPHYPKLLTVQ---------IAET---YISALKASQ----------LIPELYIAVGISGAIQHLAG 67 (108)
Q Consensus 10 ~r~~~~~~~~~~~~~pva~kL~a~~---------i~~~---~igg~SGkt----------V~P~lYia~GISGA~QH~~G 67 (108)
|.|..+.+-+++ +.-+|++|++-. ++|+ ++| ..|-. -..++.|++|.+=.-.++.+
T Consensus 210 G~g~~~~~a~~~-l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G-~~g~~~~~~~a~~~l~~aD~iL~lG~~l~~~~t~~ 287 (588)
T TIGR01504 210 GGGVINADAADL-LQEFAELTGVPVIPTLMGWGCIPDDHELMAG-MVGLQTSHRYGNATLLESDFVFGIGNRWANRHTGS 287 (588)
T ss_pred CCCcchhhhHHH-HHHHHHHhCCCeEEcCccCCCCCCCChhhCc-CCCCCCCcHHHHHHHHhCCEEEEECCCCCccccCc
Confidence 445545554533 367788888752 3333 555 22311 12589999997632222222
Q ss_pred ---cCCCCeEEEecCCCCCCccc-ccCeeEeeeHHHHHHHHHhh
Q psy15576 68 ---MKDSKTIVAINKDPEAPIFQ-VSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 68 ---m~~s~~IIAIN~Dp~ApIf~-~ADygiVgD~~evlp~Li~~ 107 (108)
......+|-||.|+..--.. ..|+.|++|+.++|++|++.
T Consensus 288 ~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~ 331 (588)
T TIGR01504 288 VDVYTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEV 331 (588)
T ss_pred ccccCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHH
Confidence 22234477889888742211 37999999999999999874
No 25
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=86.39 E-value=1.1 Score=38.92 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=39.9
Q ss_pred CcceEEeeccchhhHhhhc---cCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGISGAIQHLAG---MKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G---m~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~l 108 (108)
.++|.|++|-+=....+.+ ......+|-||.|++..- ....|+.|++|+.+++++|++++
T Consensus 297 ~aDlvL~lG~~l~~~~t~~~~~~~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l 360 (612)
T PRK07789 297 RSDLLIALGARFDDRVTGKLDSFAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAAL 360 (612)
T ss_pred hCCEEEEECCCCCccccCChhhcCCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 4899999996532222211 122334788999985321 12469999999999999998753
No 26
>PRK08322 acetolactate synthase; Reviewed
Probab=85.94 E-value=1.5 Score=37.14 Aligned_cols=60 Identities=23% Similarity=0.226 Sum_probs=38.7
Q ss_pred CcceEEeeccchhhHhhhcc--CCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGISGAIQHLAGM--KDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm--~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~l 108 (108)
.++|.|++|-+=.-.-+.+. .....+|-||.||+..= ...+|+.+++|+.+++++|++++
T Consensus 262 ~aDlil~lG~~l~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 324 (547)
T PRK08322 262 HADLIINVGHDVIEKPPFFMNPNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERL 324 (547)
T ss_pred hCCEEEEECCCCccccccccCCCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhc
Confidence 56888888854221111111 22335888888887522 12479999999999999998753
No 27
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=85.55 E-value=1.5 Score=37.65 Aligned_cols=59 Identities=17% Similarity=0.154 Sum_probs=39.9
Q ss_pred CcceEEeeccchhhHhhhcc---CCCCeEEEecCCCCCCcccccCeeEeeeHHHHHHHHHhh
Q psy15576 49 IPELYIAVGISGAIQHLAGM---KDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm---~~s~~IIAIN~Dp~ApIf~~ADygiVgD~~evlp~Li~~ 107 (108)
.++|.|++|-.=.-..+.+. ...+.+|-||.|+...--.+.++.+++|+.++|++|+++
T Consensus 284 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~ 345 (578)
T PRK06112 284 EADVVLLVGTRTNQNGTDSWSLYPEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDA 345 (578)
T ss_pred hCCEEEEECCCCCccccccccccCCCCeEEEEECChHHhCccccceEEEeCHHHHHHHHHHh
Confidence 57889999954222222221 223568888998865433444799999999999999874
No 28
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.97 E-value=1.6 Score=37.51 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=57.6
Q ss_pred Cccccccccccccccccchhhhhhc---------cccc---eeeeccCe--------ee-CcceEEeeccchhhHhhhc-
Q psy15576 10 HKVLQITQTYNSFSQPHYPKLLTVQ---------IAET---YISALKAS--------QL-IPELYIAVGISGAIQHLAG- 67 (108)
Q Consensus 10 ~r~~~~~~~~~~~~~pva~kL~a~~---------i~~~---~igg~SGk--------tV-~P~lYia~GISGA~QH~~G- 67 (108)
|.|....+-+.++ .=+|+||++-. ++|+ |+| +.|. .+ ..+|.|++|-+=.-..+.+
T Consensus 214 G~g~~~~~a~~~l-~~lae~~~~pv~tt~~gkg~~p~~hp~~~G-~~G~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~~~ 291 (574)
T PRK07979 214 GGGAINAACHQQL-KELVEKLNLPVVSSLMGLGAFPATHRQSLG-MLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNL 291 (574)
T ss_pred CCCccccchHHHH-HHHHHHhCCCEEEccccCCCCCCCCccccc-CCcCCCCHHHHHHHHhCCEEEEeCCCCcccccCCh
Confidence 4445444445333 55788888752 2222 444 2232 11 2588899997643333322
Q ss_pred --cCCCCeEEEecCCCCCCccc-ccCeeEeeeHHHHHHHHHhhC
Q psy15576 68 --MKDSKTIVAINKDPEAPIFQ-VSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 68 --m~~s~~IIAIN~Dp~ApIf~-~ADygiVgD~~evlp~Li~~l 108 (108)
......+|-||.|+...--. ..|+.+++|+.++|++|++++
T Consensus 292 ~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 335 (574)
T PRK07979 292 AKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELL 335 (574)
T ss_pred hhcCCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhh
Confidence 11223588888888743322 369999999999999998753
No 29
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=84.20 E-value=1.4 Score=37.98 Aligned_cols=60 Identities=22% Similarity=0.218 Sum_probs=40.4
Q ss_pred eCcceEEeeccchhhHhhhc---cCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhh
Q psy15576 48 LIPELYIAVGISGAIQHLAG---MKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 48 V~P~lYia~GISGA~QH~~G---m~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~ 107 (108)
-..+|.|++|-+=....+.+ ......+|-||.||+-.- ....|+.+++|+.++|++|++.
T Consensus 282 ~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~ 345 (585)
T CHL00099 282 SECDLLIALGARFDDRVTGKLDEFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLEL 345 (585)
T ss_pred HhCCEEEEECCCCcccccCCHhHcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHH
Confidence 35699999996532222211 223456889999986321 2236899999999999999774
No 30
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=82.35 E-value=2.1 Score=36.65 Aligned_cols=60 Identities=23% Similarity=0.329 Sum_probs=35.4
Q ss_pred CcceEEeeccchhhHhhhc---cCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGISGAIQHLAG---MKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G---m~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~l 108 (108)
.++|.|++|-+=.-..+.+ ......+|-||.||..-= .--+|+.+++|+.++|+.|++++
T Consensus 269 ~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 332 (563)
T PRK08527 269 ECDLLISLGARFDDRVTGKLSEFAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEEL 332 (563)
T ss_pred hCCEEEEeCCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 3467777774422211111 112234677777765211 11368999999999999998753
No 31
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=81.96 E-value=2.3 Score=36.78 Aligned_cols=59 Identities=22% Similarity=0.209 Sum_probs=38.0
Q ss_pred cceEEeeccchhhHhhhc---cCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhhC
Q psy15576 50 PELYIAVGISGAIQHLAG---MKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 50 P~lYia~GISGA~QH~~G---m~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~l 108 (108)
.+|.|++|-+=.-..+.+ ......+|-||.|+...= .-..|+.+++|+.++|++|++++
T Consensus 281 aDlil~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l 343 (570)
T PRK06725 281 CDLLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMS 343 (570)
T ss_pred CCEEEEeCCCCCccccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhc
Confidence 488888886632222211 122235778888887521 11368999999999999998753
No 32
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=81.38 E-value=1.7 Score=34.45 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=38.3
Q ss_pred CcceEEeeccchhhHhhhcc-----CCCCeEEEecCCCCCCcccccCeeEeeeHHHHH
Q psy15576 49 IPELYIAVGISGAIQHLAGM-----KDSKTIVAINKDPEAPIFQVSDYGLVADLFKAV 101 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm-----~~s~~IIAIN~Dp~ApIf~~ADygiVgD~~evl 101 (108)
+.+|.|.+|-|.++.=.+.+ +.-..+|.||.+|. |.=..||+.+-+++.|+|
T Consensus 204 ~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t-~~d~~a~~~i~~~~~~~l 260 (260)
T cd01409 204 EADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPT-RADHLATLKVDARCGEVL 260 (260)
T ss_pred cCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCC-CCCccccEEEeCChhhhC
Confidence 36899999999998633322 12245888999984 455679999999998874
No 33
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=80.82 E-value=3.1 Score=35.83 Aligned_cols=60 Identities=22% Similarity=0.207 Sum_probs=40.0
Q ss_pred CcceEEeeccchhhH-hhhccCCCCeEEEecCCCCCC-c---ccccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGISGAIQ-HLAGMKDSKTIVAINKDPEAP-I---FQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GISGA~Q-H~~Gm~~s~~IIAIN~Dp~Ap-I---f~~ADygiVgD~~evlp~Li~~l 108 (108)
.++|.|++|-+-... +.........+|-||.|+..- . .-..|+.|++|+..++++|++++
T Consensus 279 ~aDlvl~lG~~l~~~~~~~~~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 343 (569)
T PRK08327 279 EADLVLVVDSDVPWIPKKIRPDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERL 343 (569)
T ss_pred hCCEEEEeCCCCCCccccccCCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHH
Confidence 478999999753211 111122334688899988631 1 22359999999999999998753
No 34
>PRK08266 hypothetical protein; Provisional
Probab=80.82 E-value=2.3 Score=36.02 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=38.0
Q ss_pred CcceEEeeccchhhHhhhcc---CCCCeEEEecCCCCCCcccccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGISGAIQHLAGM---KDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm---~~s~~IIAIN~Dp~ApIf~~ADygiVgD~~evlp~Li~~l 108 (108)
.++|.|++|-+=... +.+- .....+|-||.|++.--.-..|+.|++|+.++|++|++++
T Consensus 263 ~aDlvl~lG~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l 324 (542)
T PRK08266 263 QTDVVIGIGSRLELP-TFRWPWRPDGLKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDAL 324 (542)
T ss_pred hCCEEEEeCCCcCcc-cccccccCCCCcEEEEECCHHHhCCcCCCceEecCHHHHHHHHHHhh
Confidence 568888888542222 2221 1224577888876642112469999999999999998753
No 35
>PRK06154 hypothetical protein; Provisional
Probab=80.75 E-value=2.8 Score=36.21 Aligned_cols=38 Identities=29% Similarity=0.257 Sum_probs=26.1
Q ss_pred CCeEEEecCCCCCCcc-cccCeeEeeeHHHHHHHHHhhC
Q psy15576 71 SKTIVAINKDPEAPIF-QVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 71 s~~IIAIN~Dp~ApIf-~~ADygiVgD~~evlp~Li~~l 108 (108)
.+.||-||.||+..=- ...|+.+++|+.++|++|+++|
T Consensus 303 ~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l 341 (565)
T PRK06154 303 GKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEEL 341 (565)
T ss_pred CCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHh
Confidence 3456666666653111 1258999999999999998753
No 36
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=79.98 E-value=3.4 Score=35.63 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=36.9
Q ss_pred CcceEEeeccchhhHhhhc---cCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhh
Q psy15576 49 IPELYIAVGISGAIQHLAG---MKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G---m~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~ 107 (108)
.++|.|++|-+=.-..+.+ ......+|-||.||.-.= ....|..+++|+.++|++|++.
T Consensus 269 ~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~ 331 (586)
T PRK06276 269 ESDVLIAIGCRFSDRTTGDISSFAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAE 331 (586)
T ss_pred cCCEEEEECCCCCccccCCccccCCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHh
Confidence 4578888885533222222 222345677888875211 1135899999999999999875
No 37
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=79.83 E-value=1.9 Score=37.33 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=37.1
Q ss_pred CcceEEeeccc--hhhHh-hhcc-CCCCeEEEecCCCCCC-cccccCeeEeeeHHHHHHHHHhh
Q psy15576 49 IPELYIAVGIS--GAIQH-LAGM-KDSKTIVAINKDPEAP-IFQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 49 ~P~lYia~GIS--GA~QH-~~Gm-~~s~~IIAIN~Dp~Ap-If~~ADygiVgD~~evlp~Li~~ 107 (108)
+.+|.|++|-+ ..... .... .....+|-||.|+..- -....|+.+++|+.++|++|+++
T Consensus 287 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~ 350 (587)
T PRK06965 287 HCDVLIAIGARFDDRVIGNPAHFASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQ 350 (587)
T ss_pred hCCEEEEECCCCcccccCChhhcCCCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHh
Confidence 36899999943 11100 0011 1234688888888531 11236999999999999999874
No 38
>PRK11269 glyoxylate carboligase; Provisional
Probab=79.52 E-value=3.4 Score=35.71 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=35.0
Q ss_pred CcceEEeeccchhhHhhhc---cCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhh
Q psy15576 49 IPELYIAVGISGAIQHLAG---MKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G---m~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~ 107 (108)
.++|.|++|-+=....+.+ ......+|-||.|+..-= .-..|+.+++|+.++|++|.++
T Consensus 270 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~ 332 (591)
T PRK11269 270 ASDFVLGIGNRWANRHTGSVEVYTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEV 332 (591)
T ss_pred hCCEEEEeCCCCCccccCchhhcCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHH
Confidence 4577777775421111111 222334666777766411 1136899999999999998764
No 39
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=79.44 E-value=0.61 Score=35.83 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=65.5
Q ss_pred cceeecCCccccccccccccccccchhhhhhc-cccceee---eccCeeeCcceEEeeccchhh---HhhhccCCCCeEE
Q psy15576 3 KWLRNSNHKVLQITQTYNSFSQPHYPKLLTVQ-IAETYIS---ALKASQLIPELYIAVGISGAI---QHLAGMKDSKTIV 75 (108)
Q Consensus 3 ~~~~~s~~r~~~~~~~~~~~~~pva~kL~a~~-i~~~~ig---g~SGktV~P~lYia~GISGA~---QH~~Gm~~s~~II 75 (108)
+|+|-.|.|..=.|-.|..+.+|+|.+||.=- +.+++.. -.||+++.|-++= =+=--+. ...-|+.-.+++-
T Consensus 87 ~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~-~~K~~~l~~~~~~~g~~~~~~~a 165 (212)
T COG0560 87 AALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDG-EGKAKALRELAAELGIPLEETVA 165 (212)
T ss_pred HHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCc-chHHHHHHHHHHHcCCCHHHeEE
Confidence 68999999999999999999999999999762 2222222 1456666554431 0111122 2233555444555
Q ss_pred EecCCCCCCcccccCeeEeeeHHHHHHHH
Q psy15576 76 AINKDPEAPIFQVSDYGLVADLFKAVPEL 104 (108)
Q Consensus 76 AIN~Dp~ApIf~~ADygiVgD~~evlp~L 104 (108)
.=....|-||++.|+.++.=...+.+-..
T Consensus 166 ~gDs~nDlpml~~ag~~ia~n~~~~l~~~ 194 (212)
T COG0560 166 YGDSANDLPMLEAAGLPIAVNPKPKLRAL 194 (212)
T ss_pred EcCchhhHHHHHhCCCCeEeCcCHHHHHH
Confidence 55667788999999888876666555443
No 40
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=79.17 E-value=2.7 Score=35.65 Aligned_cols=60 Identities=20% Similarity=0.345 Sum_probs=38.3
Q ss_pred CcceEEeeccchhhHhhhc----cCCCCeEEEecCCCCCCcccccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGISGAIQHLAG----MKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G----m~~s~~IIAIN~Dp~ApIf~~ADygiVgD~~evlp~Li~~l 108 (108)
.++|.|++|-+=--.++.+ ......+|-||.|+...=-...|..+++|+.+++++|++.+
T Consensus 272 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l 335 (530)
T PRK07092 272 GHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALL 335 (530)
T ss_pred hCCEEEEECCcccccccCCccccCCCCCeEEEEeCChHHhcCCCCCCcccCCHHHHHHHHHHhh
Confidence 5788888885411112212 12234577788888652222367899999999999998754
No 41
>PRK05858 hypothetical protein; Provisional
Probab=78.86 E-value=3.7 Score=35.04 Aligned_cols=60 Identities=15% Similarity=0.245 Sum_probs=38.1
Q ss_pred CcceEEeeccchhhH-hhhccCCCCeEEEecCCCCCCcc-cccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGISGAIQ-HLAGMKDSKTIVAINKDPEAPIF-QVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GISGA~Q-H~~Gm~~s~~IIAIN~Dp~ApIf-~~ADygiVgD~~evlp~Li~~l 108 (108)
+.++.|++|.+=... ...-......+|-|+.||...-. ...|+.+++|+.+++++|.+++
T Consensus 262 ~aD~vl~vG~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 323 (542)
T PRK05858 262 EADVVLVVGVPMDFRLGFGVFGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSALAGAG 323 (542)
T ss_pred hCCEEEEECCCCcccccccccCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHHHHhc
Confidence 458888888531000 00012223568888888754222 2369999999999999998753
No 42
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=78.49 E-value=3.3 Score=35.64 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=34.2
Q ss_pred ceEEeeccchhhHhhhc---cCCCCeEEEecCCCCCCccc-ccCeeEeeeHHHHHHHHHhh
Q psy15576 51 ELYIAVGISGAIQHLAG---MKDSKTIVAINKDPEAPIFQ-VSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 51 ~lYia~GISGA~QH~~G---m~~s~~IIAIN~Dp~ApIf~-~ADygiVgD~~evlp~Li~~ 107 (108)
++.|++|-+=.-..+.+ ......+|-||.|++..=.. ..|..|++|+.++|++|+++
T Consensus 274 D~vl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~ 334 (572)
T PRK08979 274 DLIFGIGVRFDDRTTNNLEKYCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLAL 334 (572)
T ss_pred CEEEEEcCCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHh
Confidence 66777775422111111 11223467777776642211 26999999999999999874
No 43
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=78.27 E-value=4.2 Score=34.51 Aligned_cols=35 Identities=31% Similarity=0.366 Sum_probs=24.7
Q ss_pred eEEEecCCCCCCcc-cccCeeEeeeHHHHHHHHHhh
Q psy15576 73 TIVAINKDPEAPIF-QVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 73 ~IIAIN~Dp~ApIf-~~ADygiVgD~~evlp~Li~~ 107 (108)
.+|-||.|+...-- ...|..|++|+.++|++|++.
T Consensus 288 ~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~ 323 (539)
T TIGR02418 288 TIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAER 323 (539)
T ss_pred eEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHh
Confidence 45556666654221 136899999999999999874
No 44
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=78.18 E-value=3.5 Score=35.60 Aligned_cols=60 Identities=22% Similarity=0.286 Sum_probs=35.8
Q ss_pred CcceEEeeccchhh-HhhhccCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGISGAI-QHLAGMKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GISGA~-QH~~Gm~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~l 108 (108)
..+|.|++|-+=-. +...-.+..+.+|-||.|++..= .-..|+.|++|+.++|.+|.+++
T Consensus 264 ~aDlvl~vG~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 325 (575)
T TIGR02720 264 QADLVLFVGNNYPFAEVSKAFKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQV 325 (575)
T ss_pred hCCEEEEeCCCCCccccccccCCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhc
Confidence 46777777754111 11111233455577777765411 11368999999999999998653
No 45
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=77.89 E-value=4.8 Score=34.48 Aligned_cols=60 Identities=22% Similarity=0.215 Sum_probs=37.6
Q ss_pred CcceEEeeccchhhHhhhc---cCCCCeEEEecCCCCC-CcccccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGISGAIQHLAG---MKDSKTIVAINKDPEA-PIFQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G---m~~s~~IIAIN~Dp~A-pIf~~ADygiVgD~~evlp~Li~~l 108 (108)
..++.|++|-+=....+.+ +.....+|-||.||.- .-+-..|+.+++|+.++|+.|++++
T Consensus 273 ~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 336 (561)
T PRK06048 273 ESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYV 336 (561)
T ss_pred hCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhc
Confidence 5677777775422111111 2233457778888742 1122469999999999999998753
No 46
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=77.74 E-value=4.4 Score=34.59 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=36.6
Q ss_pred CcceEEeeccchhhHhhhc----cCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGISGAIQHLAG----MKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G----m~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~l 108 (108)
..+|.|++|-+=....+.| ......+|-|+.||+..= ....|..|++|+.++|++|++++
T Consensus 265 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 329 (554)
T TIGR03254 265 EADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAA 329 (554)
T ss_pred cCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHHHHHh
Confidence 3477788885522121111 122345777777765421 22358999999999999998753
No 47
>PRK07064 hypothetical protein; Provisional
Probab=77.14 E-value=3.9 Score=34.61 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=40.3
Q ss_pred CcceEEeeccchhhHhhhcc--CCCCeEEEecCCCCCC-cccccCeeEeeeHHHHHHHHHhh
Q psy15576 49 IPELYIAVGISGAIQHLAGM--KDSKTIVAINKDPEAP-IFQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm--~~s~~IIAIN~Dp~Ap-If~~ADygiVgD~~evlp~Li~~ 107 (108)
.++|.|++|-+=.-..+.+- .....+|-||.||+.. -....|+.+.+|+.++|++|++.
T Consensus 264 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~ 325 (544)
T PRK07064 264 TCDLLLVVGSRLRGNETLKYSLALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADR 325 (544)
T ss_pred hCCEEEEecCCCCcccccccccCCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHh
Confidence 57899999975332222221 1124688899888743 23356999999999999999875
No 48
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=77.13 E-value=4 Score=34.91 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=39.0
Q ss_pred CcceEEeeccchhhHhhhc---cCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhh
Q psy15576 49 IPELYIAVGISGAIQHLAG---MKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G---m~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~ 107 (108)
.++|.|++|-+=....+.+ ......+|-||.||...= ....|..+++|+.++|++|.+.
T Consensus 272 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~ 334 (574)
T PRK06882 272 ESDLILGIGVRFDDRTTNNLAKYCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSL 334 (574)
T ss_pred hCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHH
Confidence 5688999996533333222 122235788898876421 1136999999999999999764
No 49
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=76.31 E-value=4.7 Score=34.49 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=36.8
Q ss_pred CcceEEeeccchhhHhhhc---cCC-CCeEEEecCCCCCCccc-ccCeeEeeeHHHHHHHHHhh
Q psy15576 49 IPELYIAVGISGAIQHLAG---MKD-SKTIVAINKDPEAPIFQ-VSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G---m~~-s~~IIAIN~Dp~ApIf~-~ADygiVgD~~evlp~Li~~ 107 (108)
.++|.|++|-+=.---+.+ ... ...+|-||.||+-.=.. .+|..+++|+.++|..|++.
T Consensus 273 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~ 336 (572)
T PRK06456 273 ESDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKA 336 (572)
T ss_pred hCCEEEEECCCCchhhccccccccCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHH
Confidence 5688888886521111111 111 23577778877642211 37999999999999998764
No 50
>PRK08617 acetolactate synthase; Reviewed
Probab=75.70 E-value=4.9 Score=34.22 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=34.2
Q ss_pred CcceEEeeccchhhHhhhc--cCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhh
Q psy15576 49 IPELYIAVGISGAIQHLAG--MKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G--m~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~ 107 (108)
.++|.|++|-+=.-..... ......+|-||.||...= ....|..+++|+.+++++|++.
T Consensus 268 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~ 329 (552)
T PRK08617 268 KADLVITIGYDPIEYEPRNWNSEGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEK 329 (552)
T ss_pred hCCEEEEecCccccccccccccCCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHh
Confidence 4567777774321011100 011234666777765422 1236899999999999999764
No 51
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=75.33 E-value=5.2 Score=34.38 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=37.0
Q ss_pred CcceEEeeccchhhHhhhc---cCCCCeEEEecCCCCCC-cccccCeeEeeeHHHHHHHHHhh
Q psy15576 49 IPELYIAVGISGAIQHLAG---MKDSKTIVAINKDPEAP-IFQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G---m~~s~~IIAIN~Dp~Ap-If~~ADygiVgD~~evlp~Li~~ 107 (108)
.++|.|++|-+=....+.. +.....+|-||.||+.. -....|+.+++|+.++|++|++.
T Consensus 281 ~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~ 343 (571)
T PRK07710 281 ECDLLINIGARFDDRVTGNLAYFAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQ 343 (571)
T ss_pred hCCEEEEeCCCCCccccCchhhcCCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHh
Confidence 5688888885432222211 22223466788887631 11236999999999999999864
No 52
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=73.19 E-value=6 Score=33.94 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=32.2
Q ss_pred cceEEeeccchhhHhhhccCCCCeEEEecCCCCCCcc-cccCeeEeeeHHHHHHHHHhh
Q psy15576 50 PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIF-QVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 50 P~lYia~GISGA~QH~~Gm~~s~~IIAIN~Dp~ApIf-~~ADygiVgD~~evlp~Li~~ 107 (108)
++|.|++|-+=..... ......+|-||.|+...=- ...|+.+++|+.+++.+|+++
T Consensus 266 aDlvl~lG~~~~~~~~--~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~ 322 (574)
T PRK09124 266 CDTLLMLGTDFPYRQF--YPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPL 322 (574)
T ss_pred CCEEEEECCCCCcccc--cCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHh
Confidence 5666666643211100 1112345666666643111 136999999999999999864
No 53
>PRK08611 pyruvate oxidase; Provisional
Probab=73.07 E-value=6.2 Score=34.08 Aligned_cols=58 Identities=28% Similarity=0.335 Sum_probs=36.3
Q ss_pred CcceEEeeccchhhHhhhccCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~l 108 (108)
.++|.|++|.+=...-+ ......+|-||.|+...= .-..|..+++|+.++|++|.+++
T Consensus 267 ~aDlvl~iG~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 325 (576)
T PRK08611 267 EADLLIMVGTNYPYVDY--LPKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENI 325 (576)
T ss_pred hCCEEEEeCCCCCcccc--CCCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhc
Confidence 36888888865211111 111245777888874311 11368999999999999998753
No 54
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=72.99 E-value=7.8 Score=33.64 Aligned_cols=36 Identities=22% Similarity=0.080 Sum_probs=25.2
Q ss_pred eEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhhC
Q psy15576 73 TIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 73 ~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~l 108 (108)
.+|-||.|++..- .-..|..|++|+.++|++|++++
T Consensus 296 ~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 332 (597)
T PRK08273 296 RGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLL 332 (597)
T ss_pred eEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhh
Confidence 4666666665422 11358999999999999998753
No 55
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=71.75 E-value=7.2 Score=33.34 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=36.7
Q ss_pred CcceEEeeccchhhHhhhcc---C---CCCeEEEecCCCCC--CcccccCeeEeeeHHHHHHHHHhh
Q psy15576 49 IPELYIAVGISGAIQHLAGM---K---DSKTIVAINKDPEA--PIFQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm---~---~s~~IIAIN~Dp~A--pIf~~ADygiVgD~~evlp~Li~~ 107 (108)
.++|.|++|-+=.-..+.+. . ....+|-||.|+.. .-+ ..|+.|++|+..+|++|.+.
T Consensus 270 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~-~~~~~i~~D~~~~l~~L~~~ 335 (557)
T PRK08199 270 EADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVY-RPDLAIVADPAAFAAALAAL 335 (557)
T ss_pred hCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCcc-CCCeEEecCHHHHHHHHHhc
Confidence 56888888854211111111 1 23457778888753 111 36999999999999999763
No 56
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=70.88 E-value=6.8 Score=34.10 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=36.5
Q ss_pred CcceEEeeccchhhHhhhc---cCCCCeEEEecCCCCCCcc-cccCeeEeeeHHHHHHHHHhh
Q psy15576 49 IPELYIAVGISGAIQHLAG---MKDSKTIVAINKDPEAPIF-QVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G---m~~s~~IIAIN~Dp~ApIf-~~ADygiVgD~~evlp~Li~~ 107 (108)
..+|.|++|-+=.-..+.+ ......+|-||.||...=. -..|+.+++|+.++|++|+++
T Consensus 280 ~aDlvL~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~ 342 (595)
T PRK09107 280 DCDVMLCVGARFDDRITGRLDAFSPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRL 342 (595)
T ss_pred hCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHh
Confidence 3578888885421111111 1122346778888764222 247999999999999999774
No 57
>PLN02470 acetolactate synthase
Probab=70.55 E-value=8 Score=33.40 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=37.5
Q ss_pred CcceEEeeccchhhHhhhc---cCCCCeEEEecCCCCCC-cccccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGISGAIQHLAG---MKDSKTIVAINKDPEAP-IFQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G---m~~s~~IIAIN~Dp~Ap-If~~ADygiVgD~~evlp~Li~~l 108 (108)
.++|.|++|-+=....+.+ ......+|-||.|+.-- -....|.++++|+..+|..|++++
T Consensus 279 ~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 342 (585)
T PLN02470 279 SADLLLAFGVRFDDRVTGKLEAFASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLL 342 (585)
T ss_pred hCCEEEEECCCCcccccCChhhcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhh
Confidence 4688899987522222211 11223467788887421 112369999999999999998753
No 58
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=70.17 E-value=4.7 Score=26.99 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.1
Q ss_pred ceEEeeccchhhHhhhccCCCCeEEEecCC
Q psy15576 51 ELYIAVGISGAIQHLAGMKDSKTIVAINKD 80 (108)
Q Consensus 51 ~lYia~GISGA~QH~~Gm~~s~~IIAIN~D 80 (108)
.=|+|+|.|. -.+|.+++.|+....+
T Consensus 29 ~~w~aiGfs~----~~~M~~~Dvv~~~~~~ 54 (124)
T PF03351_consen 29 NGWVAIGFSD----DGGMGGSDVVVCWVDD 54 (124)
T ss_pred CCEEEEEEcc----ccCCCCCcEEEEEEcC
Confidence 7899999998 5679999999998886
No 59
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=69.56 E-value=8.2 Score=33.04 Aligned_cols=96 Identities=9% Similarity=0.028 Sum_probs=56.6
Q ss_pred Cccccccccccccccccchhhhhhc---------cccc---eeeeccCe---------eeCcceEEeeccchhhHhhhc-
Q psy15576 10 HKVLQITQTYNSFSQPHYPKLLTVQ---------IAET---YISALKAS---------QLIPELYIAVGISGAIQHLAG- 67 (108)
Q Consensus 10 ~r~~~~~~~~~~~~~pva~kL~a~~---------i~~~---~igg~SGk---------tV~P~lYia~GISGA~QH~~G- 67 (108)
|.+....+.+ +.+.-+|++|++-- ++|+ ++|. -|. .-.++|.|++|-+=...++.+
T Consensus 219 G~g~~~~~a~-~~l~~lae~~~~pv~tt~~~kg~i~~~hp~~~G~-~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~ 296 (564)
T PRK08155 219 GGGVINSGAP-ARARELAEKAQLPTTMTLMALGMLPKAHPLSLGM-LGMHGARSTNYILQEADLLIVLGARFDDRAIGKT 296 (564)
T ss_pred CCCccccchH-HHHHHHHHHHCCCEEEcccccccCCCCChhhccC-CCCCCCHHHHHHHHhCCEEEEECCCCCccccCCH
Confidence 3344343444 33477788888762 3343 5552 232 224789999996511111111
Q ss_pred --cCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhh
Q psy15576 68 --MKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 68 --m~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~ 107 (108)
......+|-||.|++..- ...+|+.+++|+.++|++|+++
T Consensus 297 ~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~ 339 (564)
T PRK08155 297 EQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPL 339 (564)
T ss_pred hhcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHh
Confidence 122345777888887432 2236999999999999999864
No 60
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).
Probab=67.57 E-value=5.4 Score=27.83 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=28.4
Q ss_pred ccCeeeCcceEEeeccchhhHhhhccCCCCeEEEecCCCC
Q psy15576 43 LKASQLIPELYIAVGISGAIQHLAGMKDSKTIVAINKDPE 82 (108)
Q Consensus 43 ~SGktV~P~lYia~GISGA~QH~~Gm~~s~~IIAIN~Dp~ 82 (108)
+++++.. .=|+|+|+|-. .+|.+++.||+...+..
T Consensus 20 l~~~~~~-~gwvaiGfs~~----~~M~~~d~vv~~~~~~g 54 (148)
T smart00664 20 LSGPTST-NGWVAIGFSPD----GQMAGADVVVAWVDNNG 54 (148)
T ss_pred EEEecCC-CCEEEEEECCC----CCcCCCCEEEEEEcCCC
Confidence 5677666 77999999875 88999999998876644
No 61
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=66.73 E-value=11 Score=32.49 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=26.0
Q ss_pred CeEEEecCCCCCC-cccccCeeEeeeHHHHHHHHHhhC
Q psy15576 72 KTIVAINKDPEAP-IFQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 72 ~~IIAIN~Dp~Ap-If~~ADygiVgD~~evlp~Li~~l 108 (108)
..+|-||.|++.. -...+|+.+++|+..+|++|++++
T Consensus 295 ~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 332 (588)
T PRK07525 295 AKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARL 332 (588)
T ss_pred CeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhh
Confidence 3566666666531 112478999999999999998753
No 62
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=66.53 E-value=5.6 Score=33.16 Aligned_cols=44 Identities=25% Similarity=0.485 Sum_probs=39.8
Q ss_pred ceEEeeccchhhHhhhccCC--CCeEEEecCCCCCCcccccCeeEe
Q psy15576 51 ELYIAVGISGAIQHLAGMKD--SKTIVAINKDPEAPIFQVSDYGLV 94 (108)
Q Consensus 51 ~lYia~GISGA~QH~~Gm~~--s~~IIAIN~Dp~ApIf~~ADygiV 94 (108)
+++++=|.|++.+.+..+++ .=+|++--.||+++++..||+..+
T Consensus 1 riwfn~~~s~~~~~i~~lr~~~~~~i~~sh~~~~~~~~~~aD~~~~ 46 (329)
T PF15632_consen 1 RIWFNRGFSSQRDIIRSLRANRDFTIIASHRDPRAPILYAADEAYL 46 (329)
T ss_pred CEEecCCCccHHHHHHHHHcCCCeEEEEEeCCCCchHHhcCceeee
Confidence 47888999999999999998 668999999999999999999765
No 63
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=66.23 E-value=9.9 Score=32.73 Aligned_cols=97 Identities=10% Similarity=0.134 Sum_probs=53.5
Q ss_pred Cccccccccccccccccchhhhhhc---------cccc---eeeeccCe--------ee-CcceEEeeccchhhHhh---
Q psy15576 10 HKVLQITQTYNSFSQPHYPKLLTVQ---------IAET---YISALKAS--------QL-IPELYIAVGISGAIQHL--- 65 (108)
Q Consensus 10 ~r~~~~~~~~~~~~~pva~kL~a~~---------i~~~---~igg~SGk--------tV-~P~lYia~GISGA~QH~--- 65 (108)
|.|....+.+.+ ++=+|++|++-. ++|+ ++| ..|- .+ ..+|.|++|-+=....+
T Consensus 204 G~g~~~~~a~~~-l~~lae~~~~PV~tt~~gkg~~p~~hp~~~G-~~g~~g~~~~~~~l~~aDlil~lG~~~~~~~~~~~ 281 (579)
T TIGR03457 204 GGGVVMGDAVEE-CKALAERLGAPVVNSYLHNDSFPASHPLWVG-PLGYQGSKAAMKLISDADVVLALGTRLGPFGTLPQ 281 (579)
T ss_pred CcCccccChHHH-HHHHHHHhCCCEEEcccccccCCCCCchhcc-CCcCcchHHHHHHHHhCCEEEEECCCCcccccccc
Confidence 334444455544 367788887652 2222 344 1121 11 46888888844211101
Q ss_pred hc---cCCCCeEEEecCCCCCCcc-cccCeeEeeeHHHHHHHHHhhC
Q psy15576 66 AG---MKDSKTIVAINKDPEAPIF-QVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 66 ~G---m~~s~~IIAIN~Dp~ApIf-~~ADygiVgD~~evlp~Li~~l 108 (108)
.+ ......+|-||.|+.-.=. -..|+.|++|+.++|++|+++|
T Consensus 282 ~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 328 (579)
T TIGR03457 282 YGIDYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRL 328 (579)
T ss_pred cccccCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhh
Confidence 00 1123457778877754211 1368999999999999998753
No 64
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=65.88 E-value=13 Score=32.69 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=18.5
Q ss_pred ccCeeEeeeHHHHHHHHHhhC
Q psy15576 88 VSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 88 ~ADygiVgD~~evlp~Li~~l 108 (108)
..|+.|+||+.++|.+|++.+
T Consensus 308 ~~~~~i~gD~~~~l~~L~~~l 328 (550)
T COG0028 308 PVDVPIVGDAKATLEALLEEL 328 (550)
T ss_pred CCCeeEeccHHHHHHHHHHhh
Confidence 379999999999999998753
No 65
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=63.22 E-value=13 Score=23.64 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=30.7
Q ss_pred ccCeeeCc--ceEEeeccchhhHhhhccCCCCeEEEecCCC
Q psy15576 43 LKASQLIP--ELYIAVGISGAIQHLAGMKDSKTIVAINKDP 81 (108)
Q Consensus 43 ~SGktV~P--~lYia~GISGA~QH~~Gm~~s~~IIAIN~Dp 81 (108)
++=....+ .++|.-=..|++-.-+|++.-|.|++||.-+
T Consensus 5 v~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~ 45 (82)
T PF13180_consen 5 VTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKP 45 (82)
T ss_dssp EEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEE
T ss_pred eEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEE
Confidence 33444454 7888888999999999999999999999654
No 66
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=62.72 E-value=16 Score=27.77 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=28.9
Q ss_pred eCcceEEeeccchhhHhhhccCCCCeEEE---ecCCCCCCcc
Q psy15576 48 LIPELYIAVGISGAIQHLAGMKDSKTIVA---INKDPEAPIF 86 (108)
Q Consensus 48 V~P~lYia~GISGA~QH~~Gm~~s~~IIA---IN~Dp~ApIf 86 (108)
.+|++.|.+|++|+.+. +++--|+||+ +..|-+...|
T Consensus 65 ~~p~~II~~G~aG~l~~--~l~~GDvvi~~~~~~~d~~~~~~ 104 (228)
T TIGR01704 65 CKPDVIINTGSAGGLAP--TLKVGDIVVSDEARYHDADVTAF 104 (228)
T ss_pred CCCCEEEEEeeccCCCC--CCccCCEEEEEEEEEccCccccc
Confidence 57999999999999998 5666788876 4566665554
No 67
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=61.90 E-value=15 Score=28.19 Aligned_cols=47 Identities=21% Similarity=0.387 Sum_probs=34.1
Q ss_pred CcceEEeeccchhhHhhhccC-----CCCeEEEecCCCCCCcccccCeeEeee
Q psy15576 49 IPELYIAVGISGAIQHLAGMK-----DSKTIVAINKDPEAPIFQVSDYGLVAD 96 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm~-----~s~~IIAIN~Dp~ApIf~~ADygiVgD 96 (108)
+.++.|.+|-|+++.=.+++- .-..+|.||.+|. +.=+.+|+.+.+|
T Consensus 155 ~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~-~~d~~~d~~~~~~ 206 (206)
T cd01410 155 RADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPT-PKDKLADLVIHGD 206 (206)
T ss_pred cCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCC-CCCccccEEEeCC
Confidence 468999999999887666552 3346888999874 4446688887765
No 68
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=59.16 E-value=19 Score=31.02 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=35.8
Q ss_pred CcceEEeeccchhhHhhhc----cCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHHhhC
Q psy15576 49 IPELYIAVGISGAIQHLAG----MKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G----m~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li~~l 108 (108)
..+|.|++|-+=.-....+ ...-..||=|+.|++..- ....++.+++|+..+|++|++++
T Consensus 272 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l 336 (569)
T PRK09259 272 NADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGL 336 (569)
T ss_pred cCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHh
Confidence 4677788884411100000 112235677777766422 22368999999999999998753
No 69
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=59.12 E-value=12 Score=25.98 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=28.0
Q ss_pred eeCcceEEeeccchhhHh--------------hhccCCCCeEEEecCCCCC
Q psy15576 47 QLIPELYIAVGISGAIQH--------------LAGMKDSKTIVAINKDPEA 83 (108)
Q Consensus 47 tV~P~lYia~GISGA~QH--------------~~Gm~~s~~IIAIN~Dp~A 83 (108)
.=+|++|+++|.|..-.+ ++++ ++++|++++.+.-+
T Consensus 38 ~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~l-dvEvV~a~~~~~~~ 87 (97)
T PF06722_consen 38 PGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGL-DVEVVVALPAAQRA 87 (97)
T ss_dssp TSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTS-SSEEEEEETTCCCG
T ss_pred CCCCEEEEEcCCCccccccccchHHHHHHHHHHhhC-CcEEEEECCHHHHH
Confidence 447899999999987632 5677 89999999966443
No 70
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=57.37 E-value=17 Score=26.18 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=36.2
Q ss_pred CcceEEeeccchhhHhhhcc------CCCCeEEEecCCCCCCcccccCeeEeee
Q psy15576 49 IPELYIAVGISGAIQHLAGM------KDSKTIVAINKDPEAPIFQVSDYGLVAD 96 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm------~~s~~IIAIN~Dp~ApIf~~ADygiVgD 96 (108)
+.++.|++-.||....+.-+ +++ .||+|-.++++|+-+.||+.+.-.
T Consensus 72 ~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~-~ii~IT~~~~s~la~~ad~~l~~~ 124 (179)
T TIGR03127 72 KGDLLIAISGSGETESLVTVAKKAKEIGA-TVAAITTNPESTLGKLADVVVEIP 124 (179)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCC-eEEEEECCCCCchHHhCCEEEEeC
Confidence 34799999999976655332 333 589999999999999999988643
No 71
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=54.47 E-value=17 Score=27.95 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=33.5
Q ss_pred CcceEEeeccchhhHhhhccC-----CCCeEEEecCCCCCCcccccCeeEee
Q psy15576 49 IPELYIAVGISGAIQHLAGMK-----DSKTIVAINKDPEAPIFQVSDYGLVA 95 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm~-----~s~~IIAIN~Dp~ApIf~~ADygiVg 95 (108)
..+|.|.+|-|+++.-.+.+- .-..+|.||.+|. |.-..||+.+-+
T Consensus 171 ~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~-~~~~~~~~~i~~ 221 (222)
T cd01413 171 EADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADET-PFDYIADLVIQD 221 (222)
T ss_pred cCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCC-CCCcceeEEEeC
Confidence 368999999999987666532 2346889999984 666667877654
No 72
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=52.29 E-value=22 Score=26.98 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=33.2
Q ss_pred cceEEeeccchhhHhhhccC-----CCCeEEEecCCCCCCcccccCeeEeee
Q psy15576 50 PELYIAVGISGAIQHLAGMK-----DSKTIVAINKDPEAPIFQVSDYGLVAD 96 (108)
Q Consensus 50 P~lYia~GISGA~QH~~Gm~-----~s~~IIAIN~Dp~ApIf~~ADygiVgD 96 (108)
.+++|.+|-|+.+.=...+- .-..+|.||.+|...= +.+|+.+-+|
T Consensus 168 ~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~-~~~d~~~~~~ 218 (218)
T cd01407 168 ADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPAD-RKADLVILGD 218 (218)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCCC-ccceEEEeCC
Confidence 59999999999887555541 2346888999975543 5678887765
No 73
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=49.82 E-value=26 Score=25.35 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=36.6
Q ss_pred cceEEeeccchhhHhhhcc------CCCCeEEEecCCCCCCcccccCeeEeee
Q psy15576 50 PELYIAVGISGAIQHLAGM------KDSKTIVAINKDPEAPIFQVSDYGLVAD 96 (108)
Q Consensus 50 P~lYia~GISGA~QH~~Gm------~~s~~IIAIN~Dp~ApIf~~ADygiVgD 96 (108)
-++.|++..||-...+.-+ +++ .||+|-..+++|+-+.||+.+.-.
T Consensus 76 ~D~vI~iS~sG~t~~~i~~~~~ak~~g~-~iI~IT~~~~s~la~~ad~~l~~~ 127 (179)
T cd05005 76 GDLLIAISGSGETSSVVNAAEKAKKAGA-KVVLITSNPDSPLAKLADVVVVIP 127 (179)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHCCC-eEEEEECCCCCchHHhCCEEEEeC
Confidence 4799999999987765533 344 488999999999999999988643
No 74
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=48.50 E-value=40 Score=28.85 Aligned_cols=55 Identities=13% Similarity=0.063 Sum_probs=33.0
Q ss_pred CcceEEeeccchhhHhhhccCCCCeEEEecCCCCCCc-ccccCeeEeeeHHHHHHHHH
Q psy15576 49 IPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPI-FQVSDYGLVADLFKAVPELT 105 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm~~s~~IIAIN~Dp~ApI-f~~ADygiVgD~~evlp~Li 105 (108)
.++|.|++|.+ .....=......+|-||.|+...= ...+|..+++|+..++..+.
T Consensus 259 ~aDlvl~lG~~--~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~~~ 314 (549)
T PRK06457 259 KADLLIMLGTS--FPYVNFLNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNIDI 314 (549)
T ss_pred hCCEEEEECCC--CChhhcCCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHh
Confidence 46777777754 211111222345777777775421 12579999999999996443
No 75
>PLN02573 pyruvate decarboxylase
Probab=47.20 E-value=22 Score=30.90 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=13.3
Q ss_pred CeeEeeeHHHHHHHHHhhC
Q psy15576 90 DYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 90 DygiVgD~~evlp~Li~~l 108 (108)
++.++ |+.+++.+|+++|
T Consensus 334 ~~~~~-~~~~~l~~L~~~l 351 (578)
T PLN02573 334 AFGCV-LMKDFLEALAKRV 351 (578)
T ss_pred eECCc-CHHHHHHHHHHHh
Confidence 56655 7889998888753
No 76
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=45.66 E-value=37 Score=26.80 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=34.1
Q ss_pred CCeEEEecCCCCCCcccccCeeEeeeHHHHHHHHHhh
Q psy15576 71 SKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 71 s~~IIAIN~Dp~ApIf~~ADygiVgD~~evlp~Li~~ 107 (108)
-|++|+|.-+|=..--+.|++-||..+.--+|.|++.
T Consensus 110 GK~VIaIDLNPLSRTar~AtitIVDni~RA~p~~~~~ 146 (178)
T PF02006_consen 110 GKTVIAIDLNPLSRTARTATITIVDNITRAIPNMIEF 146 (178)
T ss_pred CCeEEEEeCCCcccccccCceeeehhHHHHHHHHHHH
Confidence 4789999999999999999999999999999998863
No 77
>PRK13761 hypothetical protein; Provisional
Probab=44.23 E-value=36 Score=28.05 Aligned_cols=37 Identities=30% Similarity=0.509 Sum_probs=34.0
Q ss_pred CCeEEEecCCCCCCcccccCeeEeeeHHHHHHHHHhh
Q psy15576 71 SKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 71 s~~IIAIN~Dp~ApIf~~ADygiVgD~~evlp~Li~~ 107 (108)
-|++|+|.-+|=..--+.|++-||..+.--+|.|++.
T Consensus 171 GK~VI~IDLNPLSRTar~A~itIVDni~RA~p~m~~~ 207 (248)
T PRK13761 171 GKTVIAIDLNPLSRTARTATITIVDNITRAVPNMTEY 207 (248)
T ss_pred CCeEEEEeCCCcccccccCceeeehhHHHHHHHHHHH
Confidence 4789999999999999999999999999999998763
No 78
>KOG1185|consensus
Probab=41.69 E-value=20 Score=32.56 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=29.8
Q ss_pred CCCeEEEecCCCCCCc--ccccCeeEeeeHHHHHHHHHhhC
Q psy15576 70 DSKTIVAINKDPEAPI--FQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 70 ~s~~IIAIN~Dp~ApI--f~~ADygiVgD~~evlp~Li~~l 108 (108)
++ .+|.||.+|+--= |-.+|+.|.||+..++-+|.|+|
T Consensus 302 d~-KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~e~l 341 (571)
T KOG1185|consen 302 DV-KFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLVEEL 341 (571)
T ss_pred Cc-eEEEEeCCHHHHhcccCCCCceeeecHHHHHHHHHHHh
Confidence 44 4677888876433 44899999999999999999865
No 79
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=41.06 E-value=49 Score=23.85 Aligned_cols=48 Identities=13% Similarity=0.274 Sum_probs=36.9
Q ss_pred eCc-ceEEeeccchhhHhhhcc------CCCCeEEEecCCCCCCcccccCeeEeee
Q psy15576 48 LIP-ELYIAVGISGAIQHLAGM------KDSKTIVAINKDPEAPIFQVSDYGLVAD 96 (108)
Q Consensus 48 V~P-~lYia~GISGA~QH~~Gm------~~s~~IIAIN~Dp~ApIf~~ADygiVgD 96 (108)
++| ++.|++-.||....+... +++ .+|+|-..++.|+-+.||+.+.-.
T Consensus 99 ~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga-~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 99 GQPGDVLIGISTSGNSPNVLKALEAAKERGM-KTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCC-EEEEEeCCCCCchhhhCCEEEEeC
Confidence 444 889999999987655432 233 588888889999999999998754
No 80
>PF07563 DUF1541: Protein of unknown function (DUF1541); InterPro: IPR011438 This domain is found in several hypothetical bacterial proteins as a tandem repeat.; PDB: 2KY9_A 4FIB_B.
Probab=40.84 E-value=14 Score=23.97 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=10.5
Q ss_pred hHhhhccCCCCeEEE
Q psy15576 62 IQHLAGMKDSKTIVA 76 (108)
Q Consensus 62 ~QH~~Gm~~s~~IIA 76 (108)
..||.||++|+-.|.
T Consensus 10 AdHM~GM~gA~AtI~ 24 (53)
T PF07563_consen 10 ADHMPGMKGATATID 24 (53)
T ss_dssp S-SSTTGTT-EEEEE
T ss_pred cccCCccCCCEEEEE
Confidence 479999999987663
No 81
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=40.15 E-value=56 Score=22.27 Aligned_cols=46 Identities=22% Similarity=0.462 Sum_probs=35.8
Q ss_pred ceEEeeccchhhHhhhcc------CCCCeEEEecCCCCCCcccccCeeEeeeH
Q psy15576 51 ELYIAVGISGAIQHLAGM------KDSKTIVAINKDPEAPIFQVSDYGLVADL 97 (108)
Q Consensus 51 ~lYia~GISGA~QH~~Gm------~~s~~IIAIN~Dp~ApIf~~ADygiVgD~ 97 (108)
++.|++--||..+.+.-. +++ .+|+|-.+++.|+-+.||+.+.-..
T Consensus 49 dl~I~iS~SG~t~~~~~~~~~a~~~g~-~vi~iT~~~~s~la~~ad~~l~~~~ 100 (120)
T cd05710 49 SVVILASHSGNTKETVAAAKFAKEKGA-TVIGLTDDEDSPLAKLADYVIVYGF 100 (120)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHcCC-eEEEEECCCCCcHHHhCCEEEEccC
Confidence 788999999987665322 234 5888999999999999999886543
No 82
>PRK11178 uridine phosphorylase; Provisional
Probab=39.81 E-value=46 Score=26.18 Aligned_cols=55 Identities=25% Similarity=0.409 Sum_probs=36.1
Q ss_pred CcceEEeeccchhhHhhhccCCCCeEEE---ecCCCCCCcccccCeeEeeeHHHHHHHHHh
Q psy15576 49 IPELYIAVGISGAIQHLAGMKDSKTIVA---INKDPEAPIFQVSDYGLVADLFKAVPELTE 106 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm~~s~~IIA---IN~Dp~ApIf~~ADygiVgD~~evlp~Li~ 106 (108)
.|+..|.+|.+|+++.- ++--|+||+ +..|-+..-+.-..|-.+.| +++.++|++
T Consensus 83 g~~~iI~~GtaG~l~~~--l~~GDvVI~~~a~~~Dg~s~~y~~~~~p~~~~-~~~~~~L~~ 140 (251)
T PRK11178 83 GVRTFLRIGTTGAIQPH--INVGDVLVTTASVRLDGASLHFAPLEFPAVAD-FECTTALVE 140 (251)
T ss_pred CCCEEEEEeccccCCCC--CCCCCEEEecceecCCCCccccCCCCcCCCCC-HHHHHHHHH
Confidence 59999999999999754 666788886 45665544443333333444 456666654
No 83
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=39.45 E-value=59 Score=24.96 Aligned_cols=46 Identities=22% Similarity=0.172 Sum_probs=35.7
Q ss_pred CcceEEeeccchhhHh------hhccCCCCeEEEecCCCCCCcccccCeeEee
Q psy15576 49 IPELYIAVGISGAIQH------LAGMKDSKTIVAINKDPEAPIFQVSDYGLVA 95 (108)
Q Consensus 49 ~P~lYia~GISGA~QH------~~Gm~~s~~IIAIN~Dp~ApIf~~ADygiVg 95 (108)
..++.|++..||-..- .+--++++ ||+|-..++.|+-+.||+.+..
T Consensus 175 ~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~-iI~IT~~~~s~la~~ad~~l~~ 226 (278)
T PRK11557 175 PDDLLLAISYSGERRELNLAADEALRVGAK-VLAITGFTPNALQQRASHCLYT 226 (278)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHcCCC-EEEEcCCCCCchHHhCCEEEEe
Confidence 3589999999995543 33345554 8889999999999999999864
No 84
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=39.09 E-value=27 Score=23.20 Aligned_cols=48 Identities=25% Similarity=0.232 Sum_probs=36.0
Q ss_pred CcceEEeeccchhhHhhhc------cCCCCeEEEecCCCCCCcccccCeeEeeeH
Q psy15576 49 IPELYIAVGISGAIQHLAG------MKDSKTIVAINKDPEAPIFQVSDYGLVADL 97 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~G------m~~s~~IIAIN~Dp~ApIf~~ADygiVgD~ 97 (108)
+.++.|++--||-..-+.- -+++ .||+|-.+++.|+-+.||+.+.-..
T Consensus 46 ~~d~~I~iS~sG~t~e~~~~~~~a~~~g~-~vi~iT~~~~s~la~~ad~~l~~~~ 99 (126)
T cd05008 46 EDTLVIAISQSGETADTLAALRLAKEKGA-KTVAITNVVGSTLAREADYVLYLRA 99 (126)
T ss_pred CCcEEEEEeCCcCCHHHHHHHHHHHHcCC-eEEEEECCCCChHHHhCCEEEEecC
Confidence 3478999999997654422 1334 4888888899999999999987554
No 85
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=38.25 E-value=47 Score=26.49 Aligned_cols=27 Identities=26% Similarity=0.504 Sum_probs=22.9
Q ss_pred eEEEecCCCCCCcccccCeeEeeeHHH
Q psy15576 73 TIVAINKDPEAPIFQVSDYGLVADLFK 99 (108)
Q Consensus 73 ~IIAIN~Dp~ApIf~~ADygiVgD~~e 99 (108)
.++++..||++|-.++||..+++|+.+
T Consensus 24 ~v~~~d~~~~~p~~~~ad~~~~~~~~d 50 (352)
T TIGR01161 24 KVHVLDPDANSPAVQVADHVVLAPFFD 50 (352)
T ss_pred EEEEECCCCCCChhHhCceeEeCCCCC
Confidence 477788899999999999999877655
No 86
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=37.37 E-value=48 Score=21.62 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=21.2
Q ss_pred CCCcccccCeeEeeeHHHHHHHHHhhC
Q psy15576 82 EAPIFQVSDYGLVADLFKAVPELTEKL 108 (108)
Q Consensus 82 ~ApIf~~ADygiVgD~~evlp~Li~~l 108 (108)
...--.+|-|+.-.|++.++.+-+++|
T Consensus 33 ~~~~g~iarYA~G~DYH~vlk~~L~~l 59 (78)
T PF08331_consen 33 GPGRGRIARYAWGRDYHKVLKKKLEQL 59 (78)
T ss_pred CCCCeeEeehhccCChHHHHHHHHHHH
Confidence 455567888999999999998877653
No 87
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=36.88 E-value=69 Score=24.91 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=35.4
Q ss_pred CcceEEeeccchhhHhhhccCCCCeEEE---ecCCCCCCcccccCeeEeeeHHHHHHHHH
Q psy15576 49 IPELYIAVGISGAIQHLAGMKDSKTIVA---INKDPEAPIFQVSDYGLVADLFKAVPELT 105 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm~~s~~IIA---IN~Dp~ApIf~~ADygiVgD~~evlp~Li 105 (108)
.|+..|-+|.+|++|-- ++--|+||+ +..|-...-+.-..|-.+.| +++...|.
T Consensus 78 g~~~iIr~GtaG~l~~~--~~~GDiVI~~~a~~~Dg~~~~y~~~~~p~~~d-~~l~~~l~ 134 (245)
T TIGR01718 78 GARTFIRVGTTGAIQPH--INVGDVLITTAAVRLDGASLHYAPLEFPAVAD-FEVTTALV 134 (245)
T ss_pred CCCEEEEeeccccCCCC--CCCCCEEEeCceecCCCcccccCCCCcCCCCC-HHHHHHHH
Confidence 68999999999999754 555677774 57776555444444444445 44444444
No 88
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=36.64 E-value=69 Score=25.27 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=35.9
Q ss_pred cceEEeeccchhhHhhhcc------CCCCeEEEecCCCCCCcccccCeeEee
Q psy15576 50 PELYIAVGISGAIQHLAGM------KDSKTIVAINKDPEAPIFQVSDYGLVA 95 (108)
Q Consensus 50 P~lYia~GISGA~QH~~Gm------~~s~~IIAIN~Dp~ApIf~~ADygiVg 95 (108)
.++.|++--||..+.+... +++ .+|+|-..++.|+-+.|||.+.-
T Consensus 95 ~d~~I~iS~sG~t~~~~~~~~~ak~~g~-~vi~iT~~~~s~la~~ad~~l~~ 145 (326)
T PRK10892 95 QDVVIAISNSGESSEILALIPVLKRLHV-PLICITGRPESSMARAADIHLCV 145 (326)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCC-cEEEEECCCCCcccccCCEEEEe
Confidence 4799999999987766443 223 58999999999999999999853
No 89
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.87 E-value=54 Score=27.11 Aligned_cols=44 Identities=30% Similarity=0.471 Sum_probs=36.9
Q ss_pred hHhhhccCCCCeEEEecCCCCCCcccccCeeEeeeHHHHHHHHHhh
Q psy15576 62 IQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 62 ~QH~~Gm~~s~~IIAIN~Dp~ApIf~~ADygiVgD~~evlp~Li~~ 107 (108)
.+-++-| -|++|+|.-+|=..--+.|++.||..+---+|.|++.
T Consensus 167 teaLv~m--GK~ViaIDLNPLSRTar~AsItIVDnivRA~p~li~~ 210 (256)
T COG1701 167 TEALVRM--GKTVIAIDLNPLSRTARKASITIVDNIVRAVPNLIEF 210 (256)
T ss_pred HHHHHHh--CCeEEEEeCCccccccccCceeeeHHHHHHHHHHHHH
Confidence 3444444 4789999999999999999999999999999998864
No 90
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=35.36 E-value=56 Score=24.21 Aligned_cols=48 Identities=21% Similarity=0.332 Sum_probs=35.3
Q ss_pred CcceEEeeccchhhHhhhccC-----CCCeEEEecCCCCCCcc-cccCeeEeee
Q psy15576 49 IPELYIAVGISGAIQHLAGMK-----DSKTIVAINKDPEAPIF-QVSDYGLVAD 96 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm~-----~s~~IIAIN~Dp~ApIf-~~ADygiVgD 96 (108)
+.++.|.+|-|..+.....+- .-..++.||.+|...=+ +.+|+.+.+|
T Consensus 169 ~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~~~~~~~~~~~~~~ 222 (222)
T cd00296 169 EADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPADALKKADLVILGD 222 (222)
T ss_pred cCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCCCCCCcceEEEeCC
Confidence 368889999999987766542 34579999999987653 4577766654
No 91
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=35.34 E-value=31 Score=23.52 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=19.8
Q ss_pred cccccCeeEeeeHHHHHHHHHhh
Q psy15576 85 IFQVSDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 85 If~~ADygiVgD~~evlp~Li~~ 107 (108)
-+..+||.+.||-...+++|++.
T Consensus 87 ~~~~~D~vv~GEgE~~~~~l~~~ 109 (127)
T cd02068 87 EEPGVDFVVIGEGEETFLKLLEE 109 (127)
T ss_pred cCCCCCEEEECCcHHHHHHHHHH
Confidence 34578999999999999999875
No 92
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=34.89 E-value=59 Score=19.31 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=24.4
Q ss_pred ceEEeeccchhhHhhhccCCCCeEEEecCCC
Q psy15576 51 ELYIAVGISGAIQHLAGMKDSKTIVAINKDP 81 (108)
Q Consensus 51 ~lYia~GISGA~QH~~Gm~~s~~IIAIN~Dp 81 (108)
.++|.-=..|++.+.+|++.-|.|++||..+
T Consensus 14 ~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~ 44 (70)
T cd00136 14 GVVVLSVEPGSPAERAGLQAGDVILAVNGTD 44 (70)
T ss_pred CEEEEEeCCCCHHHHcCCCCCCEEEEECCEE
Confidence 4556555667777889999999999999763
No 93
>PRK10832 phosphatidylglycerophosphate synthetase; Provisional
Probab=34.87 E-value=9.3 Score=29.23 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=17.4
Q ss_pred ccccccccccccccccchhhhhh
Q psy15576 11 KVLQITQTYNSFSQPHYPKLLTV 33 (108)
Q Consensus 11 r~~~~~~~~~~~~~pva~kL~a~ 33 (108)
|-++..-+|-++.||+|||+-..
T Consensus 54 R~~~~~S~lG~~LDPlADKll~~ 76 (182)
T PRK10832 54 RRWNQSTRFGAFLDPVADKVMVA 76 (182)
T ss_pred HHcCCCChHHHHHhHHHHHHHHH
Confidence 44555667888999999998644
No 94
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=33.67 E-value=87 Score=20.78 Aligned_cols=46 Identities=26% Similarity=0.394 Sum_probs=35.5
Q ss_pred cceEEeeccchhhHhhhc------cCCCCeEEEecCCCCCCcccccCeeEeee
Q psy15576 50 PELYIAVGISGAIQHLAG------MKDSKTIVAINKDPEAPIFQVSDYGLVAD 96 (108)
Q Consensus 50 P~lYia~GISGA~QH~~G------m~~s~~IIAIN~Dp~ApIf~~ADygiVgD 96 (108)
-++.|.+..||..+-+.- -+++ .||+|=.+++.|+-+.||+.+...
T Consensus 48 ~d~vi~iS~sG~t~~~~~~~~~a~~~g~-~vi~iT~~~~s~la~~ad~~l~~~ 99 (128)
T cd05014 48 GDVVIAISNSGETDELLNLLPHLKRRGA-PIIAITGNPNSTLAKLSDVVLDLP 99 (128)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCC-eEEEEeCCCCCchhhhCCEEEECC
Confidence 379999999997664332 1233 599999999999999999988653
No 95
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=33.36 E-value=30 Score=28.06 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=34.8
Q ss_pred eCc-ceEEeeccchhhHhhh-cc-----CCCCeEEEecCCCCCCcccccCeeEeee
Q psy15576 48 LIP-ELYIAVGISGAIQHLA-GM-----KDSKTIVAINKDPEAPIFQVSDYGLVAD 96 (108)
Q Consensus 48 V~P-~lYia~GISGA~QH~~-Gm-----~~s~~IIAIN~Dp~ApIf~~ADygiVgD 96 (108)
+.| +|.|++--||...-+. -+ +++ .+|+|-++++.|+-+.||+.+.-.
T Consensus 90 ~~~~~lvI~iS~SGeT~e~i~al~~ak~~Ga-~~I~IT~~~~S~L~~~ad~~l~~~ 144 (340)
T PRK11382 90 LDDRCAVIGVSDYGKTEEVIKALELGRACGA-LTAAFTKRADSPITSAAEFSIDYQ 144 (340)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHcCC-eEEEEECCCCChHHHhCCEEEEeC
Confidence 445 5788887788655431 11 234 689999999999999999998655
No 96
>PLN02558 CDP-diacylglycerol-glycerol-3-phosphate/ 3-phosphatidyltransferase
Probab=31.94 E-value=12 Score=29.30 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=18.4
Q ss_pred ccccccccccccccccchhhhhhc
Q psy15576 11 KVLQITQTYNSFSQPHYPKLLTVQ 34 (108)
Q Consensus 11 r~~~~~~~~~~~~~pva~kL~a~~ 34 (108)
|-++-.-+|-++.||+|||+.-..
T Consensus 60 R~~n~~T~~G~~lDPiaDKll~~~ 83 (203)
T PLN02558 60 RKMKLGTAFGAFLDPVADKLMVAA 83 (203)
T ss_pred HHcCCCChHHHHHhHHHHHHHHHH
Confidence 445556678899999999987663
No 97
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=31.18 E-value=1e+02 Score=18.59 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=25.6
Q ss_pred ceEEeeccchhhHhhhccCCCCeEEEecCCC
Q psy15576 51 ELYIAVGISGAIQHLAGMKDSKTIVAINKDP 81 (108)
Q Consensus 51 ~lYia~GISGA~QH~~Gm~~s~~IIAIN~Dp 81 (108)
.++|.==..|++...+|++.-|.|++||.-+
T Consensus 27 ~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~ 57 (82)
T cd00992 27 GIFVSRVEPGGPAERGGLRVGDRILEVNGVS 57 (82)
T ss_pred CeEEEEECCCChHHhCCCCCCCEEEEECCEE
Confidence 4667666778888889999999999999854
No 98
>PF09290 AcetDehyd-dimer: Prokaryotic acetaldehyde dehydrogenase, dimerisation; InterPro: IPR015426 This C-terminal domain is found in prokaryotic acetaldehyde dehydrogenases, it adopts a structure consisting of an alpha-beta-alpha-beta(3) core, which mediates dimerisation of the protein []. The acetaldehyde dehydrogenase family of bacterial enzymes catalyses the formation of acetyl-CoA from acetaldehyde in the 3-hydroxyphenylpropinoate degradation pathway. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate [].; GO: 0008774 acetaldehyde dehydrogenase (acetylating) activity, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1NVM_F.
Probab=31.08 E-value=37 Score=25.66 Aligned_cols=39 Identities=31% Similarity=0.463 Sum_probs=27.5
Q ss_pred chhhHhhhccCCCCeEEEecCCCCCCcccccCeeEeeeH
Q psy15576 59 SGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADL 97 (108)
Q Consensus 59 SGA~QH~~Gm~~s~~IIAIN~Dp~ApIf~~ADygiVgD~ 97 (108)
+.|++.+.|-++.|.|+-+|.-.-..+|+-.=|..+.|.
T Consensus 49 ~~ai~~vgGa~~~KaIiilNPA~Pp~~Mr~Tv~~~~~~~ 87 (137)
T PF09290_consen 49 ARAIEQVGGAKRGKAIIILNPAEPPIIMRDTVYALVDDP 87 (137)
T ss_dssp HHHHHHTT--SSEEEEEEEE--SS---EEEEEEEEESS-
T ss_pred HHHHHHhcCcccceeEEEecCCCCCCccEeEEEEEcCCC
Confidence 679999999999999999999988888888878887754
No 99
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=30.78 E-value=25 Score=17.00 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=8.3
Q ss_pred cceeecCCccc
Q psy15576 3 KWLRNSNHKVL 13 (108)
Q Consensus 3 ~~~~~s~~r~~ 13 (108)
.|||.|.|.-|
T Consensus 2 hWL~~~~GqP~ 12 (13)
T PF04648_consen 2 HWLRLSPGQPM 12 (13)
T ss_pred cceeccCCCcC
Confidence 59999988643
No 100
>PF10419 TFIIIC_sub6: TFIIIC subunit; InterPro: IPR019481 This conserved domain is found in a family of proteins that function as subunits of transcription factor IIIC (TFIIIC) []. TFIIIC in yeast and humans is required for transcription of tRNA and 5 S RNA genes by RNA polymerase III. The yeast proteins in this entry are fused to phosphoglycerate mutase domain.
Probab=30.01 E-value=37 Score=19.78 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.3
Q ss_pred cCCCCCCcccccCeeEeeeHHHHH
Q psy15576 78 NKDPEAPIFQVSDYGLVADLFKAV 101 (108)
Q Consensus 78 N~Dp~ApIf~~ADygiVgD~~evl 101 (108)
--|.+.|++++-|....|.+.+.+
T Consensus 5 gLdt~~Pil~i~~~vf~G~~~~~i 28 (35)
T PF10419_consen 5 GLDTENPILQIGNQVFEGEWEDTI 28 (35)
T ss_pred ccCCCCCEEEECCEEEEEEEhhhc
Confidence 457889999999999999887764
No 101
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=29.94 E-value=71 Score=25.45 Aligned_cols=27 Identities=22% Similarity=0.519 Sum_probs=22.8
Q ss_pred eEEEecCCCCCCcccccCeeEeeeHHH
Q psy15576 73 TIVAINKDPEAPIFQVSDYGLVADLFK 99 (108)
Q Consensus 73 ~IIAIN~Dp~ApIf~~ADygiVgD~~e 99 (108)
.++++..+|++|-+++||..++.|..+
T Consensus 24 ~v~~~d~~~~~~~~~~ad~~~~~~~~d 50 (380)
T TIGR01142 24 EVIAVDRYANAPAMQVAHRSYVINMLD 50 (380)
T ss_pred EEEEEeCCCCCchhhhCceEEEcCCCC
Confidence 488889999999999999988876543
No 102
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=29.45 E-value=24 Score=24.84 Aligned_cols=92 Identities=15% Similarity=0.277 Sum_probs=47.0
Q ss_pred ceeecCCccccccccccccccccchhhhhhcc-ccceeeeccCeeeCcceEEeeccch---hhHhh---hccCCCCeEEE
Q psy15576 4 WLRNSNHKVLQITQTYNSFSQPHYPKLLTVQI-AETYISALKASQLIPELYIAVGISG---AIQHL---AGMKDSKTIVA 76 (108)
Q Consensus 4 ~~~~s~~r~~~~~~~~~~~~~pva~kL~a~~i-~~~~igg~SGktV~P~lYia~GISG---A~QH~---~Gm~~s~~IIA 76 (108)
|||-.|.+..=.|.++..+.++++.+||--.+ ....... .....+|+-|+-+|..+ ++++. .|+...+++..
T Consensus 91 ~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~-~~g~~~p~~~~~~~~~~k~~~~~~~~~~~~~~~~~~i~i 169 (201)
T TIGR01491 91 WLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFD-EKGFIQPDGIVRVTFDNKGEAVERLKRELNPSLTETVAV 169 (201)
T ss_pred HHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEc-CCCeEecceeeEEccccHHHHHHHHHHHhCCCHHHEEEE
Confidence 44444445444555566667777777763221 1111111 13355677776555433 33433 35544444444
Q ss_pred ecCCCCCCcccccCeeEeee
Q psy15576 77 INKDPEAPIFQVSDYGLVAD 96 (108)
Q Consensus 77 IN~Dp~ApIf~~ADygiVgD 96 (108)
=.+..|.+.++.|+..++-.
T Consensus 170 GDs~~D~~~a~~ag~~~a~~ 189 (201)
T TIGR01491 170 GDSKNDLPMFEVADISISLG 189 (201)
T ss_pred cCCHhHHHHHHhcCCeEEEC
Confidence 45556667777777666543
No 103
>KOG1617|consensus
Probab=29.07 E-value=19 Score=29.55 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=17.6
Q ss_pred ccccccccccccccccchhhhhh
Q psy15576 11 KVLQITQTYNSFSQPHYPKLLTV 33 (108)
Q Consensus 11 r~~~~~~~~~~~~~pva~kL~a~ 33 (108)
|-|..+.-|-++++|+|||+..-
T Consensus 116 Rk~~l~S~~Gs~LDPlADkvlit 138 (243)
T KOG1617|consen 116 RKMRLGSIAGSVLDPLADKVLIT 138 (243)
T ss_pred hhccccchhhhccChHHHHHHHH
Confidence 44566667889999999997654
No 104
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=29.04 E-value=58 Score=23.90 Aligned_cols=10 Identities=30% Similarity=0.438 Sum_probs=6.7
Q ss_pred CeEEEecCCC
Q psy15576 72 KTIVAINKDP 81 (108)
Q Consensus 72 ~~IIAIN~Dp 81 (108)
+.||+||+|+
T Consensus 33 ~LiVgV~sD~ 42 (150)
T cd02174 33 YLIVGVHSDE 42 (150)
T ss_pred EEEEEEecCH
Confidence 5677777765
No 105
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=28.50 E-value=1e+02 Score=25.62 Aligned_cols=39 Identities=28% Similarity=0.415 Sum_probs=35.3
Q ss_pred cchhhHhhhccCCCCeEEEecCCCCCCcccccCeeEeee
Q psy15576 58 ISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVAD 96 (108)
Q Consensus 58 ISGA~QH~~Gm~~s~~IIAIN~Dp~ApIf~~ADygiVgD 96 (108)
-+.+++.+.|-+..|-||.+|.-+-..+|+-.=|+.+.|
T Consensus 176 t~~~~~~~~g~~~~kai~~~npa~p~~~m~~tv~~~~~~ 214 (302)
T PRK08300 176 TSRAIEKVGGAARGKAIIILNPAEPPLIMRDTVYCLVDE 214 (302)
T ss_pred HHHHHHHhcCcccceEEEEecCCCCCccceeeEEEeeCC
Confidence 468999999999999999999999999999888888766
No 106
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=27.95 E-value=95 Score=19.26 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=27.2
Q ss_pred cceEEeeccchhhHhhhccCCCCeEEEecCCC
Q psy15576 50 PELYIAVGISGAIQHLAGMKDSKTIVAINKDP 81 (108)
Q Consensus 50 P~lYia~GISGA~QH~~Gm~~s~~IIAIN~Dp 81 (108)
+.+||+-=.-|.+.+.+|++.-|.|++||.-+
T Consensus 25 ~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~ 56 (81)
T PF00595_consen 25 KGVFVSSVVPGSPAERAGLKVGDRILEINGQS 56 (81)
T ss_dssp EEEEEEEECTTSHHHHHTSSTTEEEEEETTEE
T ss_pred CCEEEEEEeCCChHHhcccchhhhhheeCCEe
Confidence 46777777788899999999999999999743
No 107
>PRK09330 cell division protein FtsZ; Validated
Probab=27.79 E-value=29 Score=29.68 Aligned_cols=38 Identities=21% Similarity=0.444 Sum_probs=25.9
Q ss_pred EEeeccch----hhHhhh--ccCCCCeEEEecCCCCCCcccccCe
Q psy15576 53 YIAVGISG----AIQHLA--GMKDSKTIVAINKDPEAPIFQVSDY 91 (108)
Q Consensus 53 Yia~GISG----A~QH~~--Gm~~s~~IIAIN~Dp~ApIf~~ADy 91 (108)
.-.+||.| +++||. |+++.+ .||+|||..+=-..-||.
T Consensus 16 IkViGvGG~G~Nav~~m~~~~~~~v~-fia~NTD~q~L~~~~a~~ 59 (384)
T PRK09330 16 IKVIGVGGGGGNAVNRMIEEGIQGVE-FIAANTDAQALLKSKAPV 59 (384)
T ss_pred EEEEEECCcHHHHHHHHHHcCCCCce-EEEEeCcHHHHhcCCCCe
Confidence 34567766 578875 778887 589999987654444443
No 108
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=27.55 E-value=1.1e+02 Score=18.25 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=26.4
Q ss_pred cceEEeeccchhhHhhhccCCCCeEEEecCC
Q psy15576 50 PELYIAVGISGAIQHLAGMKDSKTIVAINKD 80 (108)
Q Consensus 50 P~lYia~GISGA~QH~~Gm~~s~~IIAIN~D 80 (108)
+.++|.-=..|+..+.+|++--|.|++||..
T Consensus 26 ~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~ 56 (85)
T smart00228 26 GGVVVSSVVPGSPAAKAGLKVGDVILEVNGT 56 (85)
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCE
Confidence 4677777677889999999999999999974
No 109
>PLN02476 O-methyltransferase
Probab=27.28 E-value=56 Score=26.68 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=38.0
Q ss_pred eCcceEEeeccc--h-hhHhhhccCCCCeEEEecCCCCC-----CcccccCee-----EeeeHHHHHHHHH
Q psy15576 48 LIPELYIAVGIS--G-AIQHLAGMKDSKTIVAINKDPEA-----PIFQVSDYG-----LVADLFKAVPELT 105 (108)
Q Consensus 48 V~P~lYia~GIS--G-A~QH~~Gm~~s~~IIAIN~Dp~A-----pIf~~ADyg-----iVgD~~evlp~Li 105 (108)
.+|+-.+=+|.+ - ++.-..++.....|+++-.||+. .-|+.|.+. +.||+.|+||+|.
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~ 187 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI 187 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence 345555544432 2 23333478767789999999975 344445443 6799999999985
No 110
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=26.64 E-value=56 Score=24.41 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=21.8
Q ss_pred eCcceEEeeccchhhHhhhccCCCCeEEE
Q psy15576 48 LIPELYIAVGISGAIQHLAGMKDSKTIVA 76 (108)
Q Consensus 48 V~P~lYia~GISGA~QH~~Gm~~s~~IIA 76 (108)
..|++.|.+|++|+.+ .+++--|++|+
T Consensus 66 ~~~~~ii~~G~aG~l~--~~~~~GDvvi~ 92 (230)
T PRK05584 66 FKVDAVINTGVAGGLA--PGLKVGDVVVA 92 (230)
T ss_pred cCCCEEEEEEecCCCC--CCCccCCEEEE
Confidence 4799999999999996 45666677764
No 111
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=26.26 E-value=50 Score=24.95 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=36.6
Q ss_pred eeCc-ceEEeeccchhhHhhhcc------CCCCeEEEecCCCCCCcccccCeeEee
Q psy15576 47 QLIP-ELYIAVGISGAIQHLAGM------KDSKTIVAINKDPEAPIFQVSDYGLVA 95 (108)
Q Consensus 47 tV~P-~lYia~GISGA~QH~~Gm------~~s~~IIAIN~Dp~ApIf~~ADygiVg 95 (108)
.+.+ ++.|++-.||..+.+.-+ +++ .||+|-..++.|+-+.||+.+.-
T Consensus 44 ~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~-~ii~iT~~~~s~l~~~~d~~l~~ 98 (268)
T TIGR00393 44 MVEPNDVVLMISYSGESLELLNLIPHLKRLSH-KIIAFTGSPNSSLARAADYVLDI 98 (268)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCC-cEEEEECCCCCcccccCCEEEEc
Confidence 3444 699999999987766322 223 48999999999999999998864
No 112
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=25.80 E-value=74 Score=25.89 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=22.9
Q ss_pred eEEEecCCCCCCcccccCeeEeeeHHH
Q psy15576 73 TIVAINKDPEAPIFQVSDYGLVADLFK 99 (108)
Q Consensus 73 ~IIAIN~Dp~ApIf~~ADygiVgD~~e 99 (108)
.+++...|+++|-..+||.-+++|+.+
T Consensus 27 ~v~~~d~~~~~pa~~~ad~~~~~~~~D 53 (372)
T PRK06019 27 KVIVLDPDPDSPAAQVADEVIVADYDD 53 (372)
T ss_pred EEEEEeCCCCCchhHhCceEEecCCCC
Confidence 478889999999999999999887543
No 113
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=25.43 E-value=60 Score=25.02 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=24.1
Q ss_pred eCcceEEeeccchhhHhhhccCCCCeEEEec
Q psy15576 48 LIPELYIAVGISGAIQHLAGMKDSKTIVAIN 78 (108)
Q Consensus 48 V~P~lYia~GISGA~QH~~Gm~~s~~IIAIN 78 (108)
..|++.|-+|.+|+.|. +++--|+||+=.
T Consensus 80 ~~~~~iI~~GtaG~l~~--~l~iGDvVI~~~ 108 (235)
T PRK05819 80 YGVKKLIRVGSCGALQE--DVKVRDVVIAMG 108 (235)
T ss_pred cCCcEEEEEecccCCCC--CCCCCCEEEEce
Confidence 68999999999999987 577777787643
No 114
>PF12812 PDZ_1: PDZ-like domain
Probab=25.02 E-value=2e+02 Score=19.06 Aligned_cols=31 Identities=26% Similarity=0.560 Sum_probs=23.4
Q ss_pred eEEeeccchhhHhhhccCCCCeEEEecCCCCC
Q psy15576 52 LYIAVGISGAIQHLAGMKDSKTIVAINKDPEA 83 (108)
Q Consensus 52 lYia~GISGA~QH~~Gm~~s~~IIAIN~Dp~A 83 (108)
+|++. -+|+.++-.|+..--+|-.||.-|--
T Consensus 33 v~v~~-~~g~~~~~~~i~~g~iI~~Vn~kpt~ 63 (78)
T PF12812_consen 33 VYVAV-SGGSLAFAGGISKGFIITSVNGKPTP 63 (78)
T ss_pred EEEEe-cCCChhhhCCCCCCeEEEeECCcCCc
Confidence 45555 59999998888776666799988743
No 115
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=24.61 E-value=99 Score=24.12 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=29.1
Q ss_pred eeCcceEEeeccchhhHhhhccCCCCeEEE---ecCCCCCCccc
Q psy15576 47 QLIPELYIAVGISGAIQHLAGMKDSKTIVA---INKDPEAPIFQ 87 (108)
Q Consensus 47 tV~P~lYia~GISGA~QH~~Gm~~s~~IIA---IN~Dp~ApIf~ 87 (108)
...|++.|.+|+.|+++- +++--|.||+ +..|-++.-|.
T Consensus 66 ~f~~~~IIn~G~aG~l~~--~l~iGDvVi~~~~~~~D~~~~~~~ 107 (236)
T PRK06714 66 EFQPDELFMTGICGSLSN--KVKNGHIVVALNAIQHDVTAAGSG 107 (236)
T ss_pred hCCCCEEEEEEcccCCCC--CCCCCCEEEECeeeeccCccccCC
Confidence 468999999999999876 6666788887 44565555443
No 116
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=24.58 E-value=30 Score=25.15 Aligned_cols=52 Identities=31% Similarity=0.367 Sum_probs=33.3
Q ss_pred CcceEEeeccchhhHhhhccCCCCeEEEecCCCCCCcccccCeeEee-eHHHHHHHH
Q psy15576 49 IPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVA-DLFKAVPEL 104 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm~~s~~IIAIN~Dp~ApIf~~ADygiVg-D~~evlp~L 104 (108)
.|+=.+.+|=| ..=+.+.+.++.-+++|.|+..+ +.||+.+.. |+.+++|-|
T Consensus 167 ~~~~~i~iGDs--~~Di~aa~~ag~~i~~~~~~~~~--~~a~~~i~~~~~~~~~~~~ 219 (219)
T TIGR00338 167 SPENTVAVGDG--ANDLSMIKAAGLGIAFNAKPKLQ--QKADICINKKDLTDILPLL 219 (219)
T ss_pred CHHHEEEEECC--HHHHHHHHhCCCeEEeCCCHHHH--HhchhccCCCCHHHHHhhC
Confidence 34334445533 34456677788888998776444 578988874 577777643
No 117
>TIGR03664 fut_nucase futalosine nucleosidase. This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli.
Probab=24.32 E-value=63 Score=24.71 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=21.5
Q ss_pred eCcceEEeeccchhhHhhhccCCCCeEEEe
Q psy15576 48 LIPELYIAVGISGAIQHLAGMKDSKTIVAI 77 (108)
Q Consensus 48 V~P~lYia~GISGA~QH~~Gm~~s~~IIAI 77 (108)
..|++.|.+|+.|+.+.- ++=-|+||+-
T Consensus 54 ~~~~~ii~~G~aG~l~~~--~~~GDvvv~~ 81 (222)
T TIGR03664 54 APYELVINAGIAGGFPGS--AAVGDLVVAD 81 (222)
T ss_pred CCCCEEEEEEEcccCCCC--CCCcCEEEee
Confidence 379999999999999874 3445666653
No 118
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=23.86 E-value=1.1e+02 Score=19.17 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=22.4
Q ss_pred EEeeccchhhHhhhccCCCCeEEEecCCC
Q psy15576 53 YIAVGISGAIQHLAGMKDSKTIVAINKDP 81 (108)
Q Consensus 53 Yia~GISGA~QH~~Gm~~s~~IIAIN~Dp 81 (108)
+|.-=..+++.+.+|++.-|.|++||..+
T Consensus 13 ~V~~V~~~spa~~aGL~~GDiI~~Ing~~ 41 (79)
T cd00991 13 VIVGVIVGSPAENAVLHTGDVIYSINGTP 41 (79)
T ss_pred EEEEECCCChHHhcCCCCCCEEEEECCEE
Confidence 34333467788899999999999999753
No 119
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=23.43 E-value=1.7e+02 Score=17.61 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=23.1
Q ss_pred eEEeeccchhhHhhhccCCCCeEEEecCCC
Q psy15576 52 LYIAVGISGAIQHLAGMKDSKTIVAINKDP 81 (108)
Q Consensus 52 lYia~GISGA~QH~~Gm~~s~~IIAIN~Dp 81 (108)
+.|.-=..+++...+|++.-|.|++||.-+
T Consensus 14 ~~V~~v~~~s~a~~~gl~~GD~I~~ing~~ 43 (79)
T cd00989 14 PVIGEVVPGSPAAKAGLKAGDRILAINGQK 43 (79)
T ss_pred cEEEeECCCCHHHHcCCCCCCEEEEECCEE
Confidence 444433566777889999999999999864
No 120
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=23.21 E-value=79 Score=26.51 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=34.7
Q ss_pred ceEEeeccchhhH-hhh-----ccCCCCeEEEecCCCCCCcccccCeeEeeeHHH
Q psy15576 51 ELYIAVGISGAIQ-HLA-----GMKDSKTIVAINKDPEAPIFQVSDYGLVADLFK 99 (108)
Q Consensus 51 ~lYia~GISGA~Q-H~~-----Gm~~s~~IIAIN~Dp~ApIf~~ADygiVgD~~e 99 (108)
.|+|++.-||... =++ .-.+| .+|++-+.+++|+-+.|||.+.-.+.+
T Consensus 89 ~lvi~~S~SG~TpE~vaa~~~a~~~ga-~~i~lT~~~dSpLa~~ad~~i~~~~~~ 142 (340)
T COG2222 89 SLVIAFSQSGNTPESVAAAELAKEGGA-LTIALTNEEDSPLARAADYVIPYLAGE 142 (340)
T ss_pred eEEEEEeCCCCCHHHHHHHHHhccCCC-eEEEEecCCCChhhhcCCeeeeccCCc
Confidence 5889999999733 333 33344 567777788899999999998755443
No 121
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=22.85 E-value=14 Score=28.67 Aligned_cols=23 Identities=52% Similarity=0.859 Sum_probs=20.2
Q ss_pred cCeeeCcceEEeecc-----chhhHhhh
Q psy15576 44 KASQLIPELYIAVGI-----SGAIQHLA 66 (108)
Q Consensus 44 SGktV~P~lYia~GI-----SGA~QH~~ 66 (108)
-|+.+-|-+||++|+ ||.+||+-
T Consensus 162 yg~~l~p~v~I~LGi~Il~esgti~~li 189 (191)
T PF03596_consen 162 YGRWLVPIVYIGLGIYILIESGTIQHLI 189 (191)
T ss_pred hcccHHHHHHHHhCceeeEeCCHHHHHH
Confidence 388999999999998 79999973
No 122
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=22.77 E-value=1.1e+02 Score=24.16 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=40.4
Q ss_pred cCeeeCcceEEeeccchhhHhhhcc-----CCCCeEEEecCCCCCCcccccCeeEe
Q psy15576 44 KASQLIPELYIAVGISGAIQHLAGM-----KDSKTIVAINKDPEAPIFQVSDYGLV 94 (108)
Q Consensus 44 SGktV~P~lYia~GISGA~QH~~Gm-----~~s~~IIAIN~Dp~ApIf~~ADygiV 94 (108)
.|-.=+=++.|++-=||-.+.+.-+ +-.-.||||-.+|+.++-+.||+.++
T Consensus 81 lg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ 136 (202)
T COG0794 81 LGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSSLAKAADVVLV 136 (202)
T ss_pred ccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCeEEE
Confidence 3444444899999999988887665 12346999999999999999999886
No 123
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=22.74 E-value=1.1e+02 Score=24.76 Aligned_cols=46 Identities=15% Similarity=0.381 Sum_probs=35.3
Q ss_pred ceEEeeccchhhHhhhcc------CCCCeEEEecCCCCCCcccccCeeEeeeH
Q psy15576 51 ELYIAVGISGAIQHLAGM------KDSKTIVAINKDPEAPIFQVSDYGLVADL 97 (108)
Q Consensus 51 ~lYia~GISGA~QH~~Gm------~~s~~IIAIN~Dp~ApIf~~ADygiVgD~ 97 (108)
++.|++--||....+.+. +++ .+|+|-.+|++|+.+.||+.+.-..
T Consensus 133 DvvI~IS~SG~T~~vi~al~~Ak~~Ga-~tI~IT~~~~s~La~~aD~~I~~~~ 184 (299)
T PRK05441 133 DVVVGIAASGRTPYVIGALEYARERGA-LTIGISCNPGSPLSKEADIAIEVVV 184 (299)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCC-eEEEEECCCCChhhHhCCEEEEcCC
Confidence 788888888876665543 233 5788888999999999999987553
No 124
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=22.17 E-value=84 Score=22.45 Aligned_cols=44 Identities=11% Similarity=0.242 Sum_probs=34.4
Q ss_pred ceEEeeccchhhHhhhcc------CCCCeEEEecCCCCCCcccccCeeEee
Q psy15576 51 ELYIAVGISGAIQHLAGM------KDSKTIVAINKDPEAPIFQVSDYGLVA 95 (108)
Q Consensus 51 ~lYia~GISGA~QH~~Gm------~~s~~IIAIN~Dp~ApIf~~ADygiVg 95 (108)
++.|.+--||....+..+ +++ .+|+|-..++.|+-+.||+.+.-
T Consensus 81 D~~i~iS~sG~t~~~~~~~~~a~~~g~-~ii~iT~~~~s~l~~~ad~~l~~ 130 (154)
T TIGR00441 81 DVLLGISTSGNSKNVLKAIEAAKDKGM-KTITLAGKDGGKMAGLADIELRV 130 (154)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHCCC-EEEEEeCCCCCchhhhCCEEEEe
Confidence 789999999966655332 233 58899999999999999998863
No 125
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=21.87 E-value=56 Score=26.50 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=36.3
Q ss_pred eCc-ceEEeeccchhhHhhhcc------CCCCeEEEecCCCCCCcccccCeeEee
Q psy15576 48 LIP-ELYIAVGISGAIQHLAGM------KDSKTIVAINKDPEAPIFQVSDYGLVA 95 (108)
Q Consensus 48 V~P-~lYia~GISGA~QH~~Gm------~~s~~IIAIN~Dp~ApIf~~ADygiVg 95 (108)
++| +++|.+--||....+.+. +++ .+|+|-.+|+.|+.+.||+.+.-
T Consensus 124 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga-~tIaIT~~~~s~La~~aD~~I~~ 177 (291)
T TIGR00274 124 LTKNDVVVGIAASGRTPYVIAGLQYARSLGA-LTISIACNPKSAASEIADIAIET 177 (291)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCC-eEEEEECCCCChhHHhCCEEEec
Confidence 444 888998888877666443 123 68889999999999999999865
No 126
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=21.41 E-value=1.2e+02 Score=23.11 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=33.0
Q ss_pred eCc-ceEEeeccchhhHhh------hccCCCCeEEEecCCCCCCcccccCeeEeee
Q psy15576 48 LIP-ELYIAVGISGAIQHL------AGMKDSKTIVAINKDPEAPIFQVSDYGLVAD 96 (108)
Q Consensus 48 V~P-~lYia~GISGA~QH~------~Gm~~s~~IIAIN~Dp~ApIf~~ADygiVgD 96 (108)
.+| ++.|++..||-...+ +--++++ ||+|-. +++|+.+.||+.+.-.
T Consensus 173 ~~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~-vI~IT~-~~s~l~~~ad~~l~~~ 226 (284)
T PRK11302 173 SSDGDVVVLISHTGRTKSLVELAQLARENGAT-VIAITS-AGSPLAREATLALTLD 226 (284)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCe-EEEECC-CCChhHHhCCEEEecC
Confidence 345 689999999954433 2344564 666664 7999999999998643
No 127
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=21.38 E-value=92 Score=24.53 Aligned_cols=36 Identities=17% Similarity=0.418 Sum_probs=27.4
Q ss_pred CcceEEeeccchhhHhhhccCCCCeEEE---ecCCCCCCcccc
Q psy15576 49 IPELYIAVGISGAIQHLAGMKDSKTIVA---INKDPEAPIFQV 88 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm~~s~~IIA---IN~Dp~ApIf~~ 88 (108)
.|++.|.+|+.|+. .++-.|.||+ +..|-++.-|.+
T Consensus 60 ~pd~IIn~GvAGg~----~l~igDvViat~~~~hD~d~~~~g~ 98 (212)
T PRK06026 60 LPDLVVSLGSAGSA----KLEQTEVYQVSSVSYRDMDASPLGF 98 (212)
T ss_pred CCCEEEEecccCCC----CCccCCEEEEeeEEEcCCCCcccCC
Confidence 39999999999994 4777887775 456777666643
No 128
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=21.13 E-value=52 Score=25.87 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=19.9
Q ss_pred cCeeeCcceEEeecc-----chhhHhhh
Q psy15576 44 KASQLIPELYIAVGI-----SGAIQHLA 66 (108)
Q Consensus 44 SGktV~P~lYia~GI-----SGA~QH~~ 66 (108)
-|+.+-|-+||.+|+ ||.+||+-
T Consensus 162 yg~~lvp~VlIgLGi~Il~esg~~~~l~ 189 (193)
T TIGR00779 162 YSRWIMPIVFIGLGIYIIIENDTIQALL 189 (193)
T ss_pred hCCeeeeeeEhhcCeeeeEeCCHHHHHH
Confidence 389999999999997 78888864
No 129
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=20.86 E-value=44 Score=28.78 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=12.6
Q ss_pred cCeeEeeeHHHHHHHHHhh
Q psy15576 89 SDYGLVADLFKAVPELTEK 107 (108)
Q Consensus 89 ADygiVgD~~evlp~Li~~ 107 (108)
.|..+ +|+.+.|.+|+++
T Consensus 312 ~~~~i-~d~~~~L~~l~~~ 329 (535)
T TIGR03394 312 ADIPL-AGLVDALLALLCG 329 (535)
T ss_pred CCccH-HHHHHHHHHhhhc
Confidence 56666 7788888777653
No 130
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=20.83 E-value=88 Score=24.07 Aligned_cols=29 Identities=14% Similarity=0.387 Sum_probs=23.5
Q ss_pred eeCcceEEeeccchhhHhhhccCCCCeEEEe
Q psy15576 47 QLIPELYIAVGISGAIQHLAGMKDSKTIVAI 77 (108)
Q Consensus 47 tV~P~lYia~GISGA~QH~~Gm~~s~~IIAI 77 (108)
...|++.|.+|+.|+.+ .+++--|+||+=
T Consensus 66 ~f~~~~II~~G~AG~l~--~~l~iGDvVi~~ 94 (233)
T PRK14697 66 KFDVDAIINTGVAGGLH--PDVKVGDIVIST 94 (233)
T ss_pred hcCCCEEEEEecccCCC--CCCCcCCEEEEC
Confidence 46899999999999997 467777777764
No 131
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=20.66 E-value=89 Score=23.71 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=23.6
Q ss_pred eeCcceEEeeccchhhHhhhccCCCCeEEE
Q psy15576 47 QLIPELYIAVGISGAIQHLAGMKDSKTIVA 76 (108)
Q Consensus 47 tV~P~lYia~GISGA~QH~~Gm~~s~~IIA 76 (108)
...|+..|.+|++|+.+ .+++--|+||+
T Consensus 43 ~~~~~~vI~~G~aG~l~--~~l~~Gdvvi~ 70 (212)
T TIGR03468 43 AAGAAGLVSFGTAGALD--PALQPGDLVVP 70 (212)
T ss_pred HcCCCEEEEEEecccCC--CCCCCCCEEee
Confidence 46799999999999998 57877777775
No 132
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=20.39 E-value=1.2e+02 Score=26.39 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=36.7
Q ss_pred CcceEEeeccchhhHhhhcc------CCCCeEEEecCCCCCCcccccCeeEeeeH
Q psy15576 49 IPELYIAVGISGAIQHLAGM------KDSKTIVAINKDPEAPIFQVSDYGLVADL 97 (108)
Q Consensus 49 ~P~lYia~GISGA~QH~~Gm------~~s~~IIAIN~Dp~ApIf~~ADygiVgD~ 97 (108)
+.+|.|++--||-..-+.-. +++ .+|+|-++++.|+-+.||+.+.-..
T Consensus 338 ~~dlvI~iS~SG~T~e~v~a~~~ak~~ga-~~IaIT~~~~S~La~~ad~~l~~~~ 391 (607)
T TIGR01135 338 KDTLVIAISQSGETADTLAALRLAKELGA-KTLGICNVPGSTLVRESDHTLYTRA 391 (607)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHcCC-cEEEEECCCCChHHhhcCceEEecC
Confidence 34799999999976654211 124 5899999999999999999888554
No 133
>KOG4441|consensus
Probab=20.23 E-value=91 Score=27.56 Aligned_cols=48 Identities=27% Similarity=0.215 Sum_probs=38.9
Q ss_pred cccccccccccccccchhhhhhccccceeeeccCeeeCcceEEeeccchhhH
Q psy15576 12 VLQITQTYNSFSQPHYPKLLTVQIAETYISALKASQLIPELYIAVGISGAIQ 63 (108)
Q Consensus 12 ~~~~~~~~~~~~~pva~kL~a~~i~~~~igg~SGktV~P~lYia~GISGA~Q 63 (108)
.+.+.|.| +|..++-..++.+.+.-.+..+..+.=+||+.-|.+|.-.
T Consensus 394 ~l~svE~Y----Dp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 394 SLNSVECY----DPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred ccccEEEe----cCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence 35556666 8999998888877766666778889999999999999876
No 134
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=20.18 E-value=99 Score=24.75 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=21.0
Q ss_pred eEEEecCCCCCCcccccCeeEeeeH
Q psy15576 73 TIVAINKDPEAPIFQVSDYGLVADL 97 (108)
Q Consensus 73 ~IIAIN~Dp~ApIf~~ADygiVgD~ 97 (108)
.++++..+|++|-+.+||..++.|.
T Consensus 37 ~v~~~~~~~~~~~~~~ad~~~~~~~ 61 (395)
T PRK09288 37 EVIAVDRYANAPAMQVAHRSHVIDM 61 (395)
T ss_pred EEEEEeCCCCCchHHhhhheEECCC
Confidence 6788999999999999998777653
Done!