RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15576
(108 letters)
>gnl|CDD|224936 COG2025, FixB, Electron transfer flavoprotein, alpha subunit
[Energy production and conversion].
Length = 313
Score = 134 bits (339), Expect = 6e-40
Identities = 48/59 (81%), Positives = 52/59 (88%)
Query: 50 PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108
P+LYIA+GISGAIQHLAGMKDSK IVAINKDP APIFQV+DYG+V DLFK VP L E L
Sbjct: 252 PKLYIALGISGAIQHLAGMKDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEAL 310
>gnl|CDD|215032 PLN00022, PLN00022, electron transfer flavoprotein subunit alpha;
Provisional.
Length = 356
Score = 132 bits (335), Expect = 4e-39
Identities = 53/59 (89%), Positives = 56/59 (94%)
Query: 50 PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108
PELYIAVGISGAIQHLAGMKDSK IVAINKD +APIFQV+DYGLVADLF+AVPEL EKL
Sbjct: 294 PELYIAVGISGAIQHLAGMKDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKL 352
>gnl|CDD|235120 PRK03363, fixB, putative electron transfer flavoprotein FixB;
Provisional.
Length = 313
Score = 85.8 bits (212), Expect = 2e-21
Identities = 38/61 (62%), Positives = 44/61 (72%)
Query: 48 LIPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEK 107
L PELY+AVGISG IQH+ G S+TI AINKD APIFQ +DYG+V D K +P LT
Sbjct: 251 LKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAA 310
Query: 108 L 108
L
Sbjct: 311 L 311
>gnl|CDD|183380 PRK11916, PRK11916, electron transfer flavoprotein subunit YdiR;
Provisional.
Length = 312
Score = 81.1 bits (200), Expect = 9e-20
Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 37 ETYISALKASQLIPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVAD 96
E YI + L +LY+ +GISG IQH+ G +K IVAINKD APIF +DYGLV D
Sbjct: 240 ERYI-GVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGD 298
Query: 97 LFKAVPELTEKL 108
++K VP L +L
Sbjct: 299 IYKVVPALISQL 310
>gnl|CDD|189709 pfam00766, ETF_alpha, Electron transfer flavoprotein FAD-binding
domain. This domain found at the C-terminus of
electron transfer flavoprotein alpha chain and binds to
FAD. The fold consists of a five-stranded parallel beta
sheet as the core of the domain, flanked by alternating
helices. A small part of this domain is donated by the
beta chain.
Length = 86
Score = 58.3 bits (142), Expect = 9e-13
Identities = 21/23 (91%), Positives = 22/23 (95%)
Query: 50 PELYIAVGISGAIQHLAGMKDSK 72
P+LYIAVGISGAIQHLAGMKDS
Sbjct: 64 PKLYIAVGISGAIQHLAGMKDSD 86
>gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase)
[Translation, ribosomal structure and biogenesis].
Length = 509
Score = 32.9 bits (76), Expect = 0.017
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 11/46 (23%)
Query: 61 AIQHLAGMKDSKT--IVAINK------DPEAPIFQVSDYGLVADLF 98
AI H K + +VAINK +P+ ++ +YGLV + +
Sbjct: 99 AINHA---KAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEW 141
>gnl|CDD|235952 PRK07187, PRK07187, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 721
Score = 26.6 bits (59), Expect = 3.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 21 SFSQPHYPKLLTVQIAETYISALKASQLIPELYIAVG 57
S ++ +Y L I +TYISA K Q I EL+ G
Sbjct: 318 SITEEYYNLLANPAIKKTYISARKLFQTIAELHFESG 354
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily
(fold type II); this family of pyridoxal phosphate
(PLP)-dependent enzymes catalyzes beta-replacement and
beta-elimination reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan synthase beta chain (Trp-synth_B),
cystathionine beta-synthase (CBS), O-acetylserine
sulfhydrylase (CS), serine dehydratase (Ser-dehyd),
threonine dehydratase (Thr-dehyd), diaminopropionate
ammonia lyase (DAL), and threonine synthase (Thr-synth).
ACCD catalyzes the conversion of
1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate
and ammonia. Tryptophan synthase folds into a tetramer,
where the beta chain is the catalytic PLP-binding
subunit and catalyzes the formation of L-tryptophan from
indole and L-serine. CBS is a tetrameric hemeprotein
that catalyzes condensation of serine and homocysteine
to cystathionine. CS is a homodimer that catalyzes the
formation of L-cysteine from O-acetyl-L-serine.
Ser-dehyd catalyzes the conversion of L- or D-serine to
pyruvate and ammonia. Thr-dehyd is active as a homodimer
and catalyzes the conversion of L-threonine to
2-oxobutanoate and ammonia. DAL is also a homodimer and
catalyzes the alpha, beta-elimination reaction of both
L- and D-alpha, beta-diaminopropionate to form pyruvate
and ammonia. Thr-synth catalyzes the formation of
threonine and inorganic phosphate from
O-phosphohomoserine.
Length = 244
Score = 25.9 bits (58), Expect = 3.9
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 28 PKLLTV---QIAETYISALKASQLIPELYIAVGISGAIQHLAGMKDSKTIVAI 77
P+++TV + E + ++ E A ++ A++ + KT+V I
Sbjct: 188 PEVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKLGKGKTVVVI 240
>gnl|CDD|217251 pfam02844, GARS_N, Phosphoribosylglycinamide synthetase, N domain.
Phosphoribosylglycinamide synthetase catalyzes the
second step in the de novo biosynthesis of purine. The
reaction catalyzed by Phosphoribosylglycinamide
synthetase is the ATP- dependent addition of
5-phosphoribosylamine to glycine to form
5'phosphoribosylglycinamide. This domain is related to
the N-terminal domain of biotin carboxylase/carbamoyl
phosphate synthetase (see pfam00289).
Length = 101
Score = 25.5 bits (57), Expect = 4.0
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 21/74 (28%)
Query: 42 ALKASQLIPELYIAVGISGAIQHLAGM------KDSKTIVAINKD---------PEAPIF 86
L S + ++Y+A G + LA D + + K+ PEAP+
Sbjct: 18 KLAQSPRVEKVYVAPG-NPGTAQLAKNVNVIDETDFEALADFAKEENIDLVVVGPEAPLV 76
Query: 87 QVSDYGLVADLFKA 100
G+V D +A
Sbjct: 77 A----GIV-DALRA 85
>gnl|CDD|220165 pfam09290, AcetDehyd-dimer, Prokaryotic acetaldehyde
dehydrogenase, dimerisation. Members of this family
are found in prokaryotic acetaldehyde dehydrogenase
(acylating), and adopt a structure consisting of an
alpha-beta-alpha-beta(3) core. They mediate
dimerisation of the protein.
Length = 137
Score = 25.6 bits (57), Expect = 4.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 59 SGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVAD 96
+ AI+ + G K K I+ +N I + + Y LV D
Sbjct: 49 ARAIEKVGGAKRGKAIIILNPAEPPLIMRDTIYCLVDD 86
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 25.2 bits (56), Expect = 9.1
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 11/43 (25%)
Query: 61 AIQHLAGMKDSKT--IVAINK------DPEAPIFQVSDYGLVA 95
AI H A K + IVAINK +P+ ++S+YGLV
Sbjct: 340 AINH-A--KAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVP 379
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,328,012
Number of extensions: 443117
Number of successful extensions: 360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 25
Length of query: 108
Length of database: 10,937,602
Length adjustment: 73
Effective length of query: 35
Effective length of database: 7,699,760
Effective search space: 269491600
Effective search space used: 269491600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)