RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15576
(108 letters)
>1efv_A Electron transfer flavoprotein; electron transport, glutaric
acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Length = 315
Score = 155 bits (394), Expect = 2e-48
Identities = 54/59 (91%), Positives = 57/59 (96%)
Query: 50 PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108
PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQV+DYG+VADLFK VPE+TE L
Sbjct: 254 PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEIL 312
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport,
glutaric acidemia type II; HET: FAD AMP; 2.60A
{Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Length = 307
Score = 154 bits (393), Expect = 3e-48
Identities = 50/59 (84%), Positives = 53/59 (89%)
Query: 50 PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108
PELY+AVGISGAIQHLAGMKDSK IVAINKD EAPIFQ++DYGLV DLF VPELT KL
Sbjct: 249 PELYVAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL 307
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET:
AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP:
c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D*
3clt_D* 3clr_D* 3cls_D*
Length = 320
Score = 148 bits (377), Expect = 9e-46
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 50 PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108
+LY+A+GISG+IQH+AGMK TI+A+N DP A IF ++ YG+VAD+F EL +L
Sbjct: 260 CKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL 318
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 27.2 bits (61), Expect = 1.0
Identities = 10/77 (12%), Positives = 21/77 (27%), Gaps = 37/77 (48%)
Query: 61 AIQHLAGMKDSKT--IVAINK--------------------------------DPEAPIF 86
A+ L + +T +VA NK +
Sbjct: 114 ALNIL---RMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVG 170
Query: 87 QVSDYGLVADLFKAVPE 103
++ + G ++ F V +
Sbjct: 171 KLHEEGFESERFDRVTD 187
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting
domain, arm repeats phospho-CTD, phosphoprotein,
transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A*
3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Length = 145
Score = 27.0 bits (59), Expect = 1.1
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 33 VQIAETYISALKASQLIPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYG 92
VQ E +I K +P LY+ I ++ S+ KD AP F +
Sbjct: 44 VQSVEKFIQKCKPEYKVPGLYVIDSI---------VRQSRHQFGQEKDVFAPRFSNNIIS 94
Query: 93 LVADLFKAVPELTEKL 108
+L++ + K+
Sbjct: 95 TFQNLYRCPGDDKSKI 110
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.9 bits (53), Expect = 5.6
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 5/27 (18%)
Query: 61 AIQHL-AGMK----DSKTIVAINKDPE 82
A++ L A +K DS +AI E
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 24.8 bits (55), Expect = 6.2
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 11/43 (25%)
Query: 61 AIQHLAGMKDSKT--IVAINK------DPEAPIFQVSDYGLVA 95
+IQH KD+ ++AINK DPE ++ Y +V
Sbjct: 96 SIQH---AKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVC 135
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding;
2.20A {Homo sapiens}
Length = 581
Score = 25.0 bits (53), Expect = 6.3
Identities = 9/51 (17%), Positives = 17/51 (33%)
Query: 2 NKWLRNSNHKVLQITQTYNSFSQPHYPKLLTVQIAETYISALKASQLIPEL 52
+W + L SF+ + + + S ASQ+ E+
Sbjct: 284 AQWEDITGTTPLTFVNECVSFTTNVSARFWLIDCRQIQESVTFASQVYREI 334
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 24.8 bits (55), Expect = 6.4
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 61 AIQHLAGMKDSKTIVAINK------DPEAPIFQVSDYGLVA 95
AIQH A +VA+NK DP+ ++S YG++
Sbjct: 95 AIQH-AKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILP 134
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 24.9 bits (55), Expect = 6.5
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 74 IVAINKDPEAPIFQVSDYGLVADL--FKAVPELTEK 107
+VA+++ AP QV+ V ++ + + E+
Sbjct: 45 VVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVER 80
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 25.0 bits (54), Expect = 6.7
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 35 IAETYISALKASQLIPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLV 94
I + + + + + ++ S + L +D I +N D + F + G
Sbjct: 847 IHKLATRGVLFWKELDDKIFSLDRSKRVAELKKRRD-YIIKKLNDDFQKVWFGRNSAGEP 905
Query: 95 ADL 97
DL
Sbjct: 906 VDL 908
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 24.9 bits (55), Expect = 6.9
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 38 TYISALKASQLI----PELYIAV-GISG----AIQHLAGMKDSKTIVAINKDPEA 83
+ A++ + E + V GI G IQ L + + TIV I++ +
Sbjct: 155 SM-GAIRQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKH 208
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance
methyltransferase, 23S R methyltransferase; 2.00A
{Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Length = 277
Score = 24.4 bits (54), Expect = 9.4
Identities = 6/49 (12%), Positives = 17/49 (34%), Gaps = 10/49 (20%)
Query: 42 ALKASQLIPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSD 90
++A E+Y + +G ++ + + E P+ +
Sbjct: 46 CIRAGVQFIEVYGS----------SGTPLDPALLDLCRQREIPVRLIDV 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,564,058
Number of extensions: 81822
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 15
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.2 bits)