RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15576
(108 letters)
>d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron
transfer flavoprotein alpha subunit {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 114 bits (288), Expect = 3e-35
Identities = 54/59 (91%), Positives = 57/59 (96%)
Query: 50 PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108
PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQV+DYG+VADLFK VPE+TE L
Sbjct: 65 PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEIL 123
>d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron
transfer flavoprotein alpha subunit {Methylophilus
methylotrophus [TaxId: 17]}
Length = 123
Score = 111 bits (279), Expect = 9e-34
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 50 PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108
+LY+A+GISG+IQH+AGMK TI+A+N DP A IF ++ YG+VAD+F EL +L
Sbjct: 65 CKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL 123
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 29.8 bits (66), Expect = 0.057
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 48 LIPELYIAVGISGAIQHLAGMKDSKTIVAI-----NKDPEA 83
+IP L A ++ A++ M + I+ +KD +
Sbjct: 340 IIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDI 380
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 26.4 bits (57), Expect = 0.82
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
Query: 48 LIPELYIAVGISGAIQHLAGMKDSKTIVAIN------KDPEAPIFQVSDY 91
+IP L + ++ A++ + + + ++ +N KD IF V D
Sbjct: 344 IIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKD----IFTVHDI 389
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 160
Score = 24.4 bits (52), Expect = 3.1
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 68 MKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTEKL 108
+K ++++ DP +VAD+ L +
Sbjct: 108 LKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLV 148
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
{Clostridium sticklandii [TaxId: 1511]}
Length = 516
Score = 24.3 bits (53), Expect = 3.8
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 36 AETYISALKASQLIPELYIAVGISGAIQHLAGMKDSKTIV--AINKDPEAP---IFQVSD 90
+ Y++ A + + + I+ LAG+ + + + A DPE ++++S
Sbjct: 297 EDNYLTTADAFEEAHTVLASQFINEQFALLAGLPEEQMGLGHAFEMDPELKNGFLYELSQ 356
Query: 91 YGLVADLFKAVP 102
+ ++F P
Sbjct: 357 AQMAREIFPKAP 368
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 24.1 bits (51), Expect = 4.1
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 45 ASQLIPELYIAVGIS------GAIQHLAGMKDSKTIVAINKD 80
A +L E + +G+S A+Q + K + I+ D
Sbjct: 249 ARRLAREEGLFLGMSSGGIVWAALQVARELGPGKRVACISPD 290
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 24.1 bits (51), Expect = 4.5
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 45 ASQLIPELYIAVGIS------GAIQHLAGMKDSKTIVAINKD 80
A LI + + G S A++ +++ + V I D
Sbjct: 293 ARMLIAQEGLLCGGSAGSTVAVAVKAAQELQEGQRCVVILPD 334
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 23.9 bits (51), Expect = 4.7
Identities = 3/26 (11%), Positives = 10/26 (38%)
Query: 55 AVGISGAIQHLAGMKDSKTIVAINKD 80
++ A++ + +V + D
Sbjct: 259 GANVAAALKVAQKLGPDARVVTVAPD 284
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 23.9 bits (50), Expect = 5.0
Identities = 6/46 (13%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 34 QIAETYISALKASQLIPE-LYIAVGISGAIQHLAGMKDSKTIVAIN 78
++A+ +I + +Y G + + + I+ I+
Sbjct: 262 EVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGELGEKILFIH 307
>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Klebsiella pneumoniae [TaxId: 573]}
Length = 519
Score = 23.9 bits (51), Expect = 5.9
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 40 ISALKASQLIPELYIAVGISGAIQHLAG 67
+ KA Q + + ++G + + ++ G
Sbjct: 62 VDPAKACQPLGAVLCSLGFANTLPYVHG 89
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 23.3 bits (49), Expect = 8.1
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 16 TQTYNSFSQPHYPKLLTV-QIAETYISALKASQLIPELYI 54
TQ P ++ + Y ALK + I + Y
Sbjct: 349 TQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYA 388
>d1nvmb2 d.81.1.1 (B:132-286) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 155
Score = 23.2 bits (50), Expect = 8.4
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 59 SGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVAD 96
S AI+ + G K I+ +N I + + Y L A
Sbjct: 49 SKAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSAA 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 368,352
Number of extensions: 13900
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 15
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)