Query psy15579
Match_columns 368
No_of_seqs 262 out of 2334
Neff 5.5
Searched_HMMs 29240
Date Sat Aug 17 00:56:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1efv_A Electron transfer flavo 100.0 9.6E-59 3.3E-63 453.3 21.2 225 5-259 1-313 (315)
2 1efp_A ETF, protein (electron 100.0 3.1E-58 1.1E-62 448.3 20.4 221 7-258 1-307 (307)
3 1o97_D Electron transferring f 100.0 1.5E-56 5.3E-61 438.6 22.0 223 7-259 2-319 (320)
4 3ih5_A Electron transfer flavo 99.9 2.5E-26 8.5E-31 213.4 8.6 140 224-368 5-160 (217)
5 1efv_A Electron transfer flavo 99.9 1.9E-22 6.5E-27 197.0 4.6 135 225-368 4-141 (315)
6 1o97_D Electron transferring f 99.9 4E-22 1.4E-26 195.0 6.8 137 225-368 3-145 (320)
7 1efp_A ETF, protein (electron 99.8 2.6E-21 8.9E-26 188.3 7.6 132 225-368 2-137 (307)
8 3fet_A Electron transfer flavo 99.8 5.1E-19 1.8E-23 158.1 5.9 119 224-368 5-127 (166)
9 1o97_C Electron transferring f 99.7 1.4E-17 4.9E-22 158.8 7.0 131 232-367 31-173 (264)
10 1efp_B ETF, protein (electron 99.6 2E-16 6.7E-21 150.0 5.6 128 233-367 32-171 (252)
11 1efv_B Electron transfer flavo 99.6 2.3E-16 7.9E-21 149.8 5.8 128 233-367 35-174 (255)
12 3ih5_A Electron transfer flavo 99.5 9.9E-15 3.4E-19 135.3 8.5 101 3-103 1-210 (217)
13 3fet_A Electron transfer flavo 98.7 6.1E-08 2.1E-12 86.2 9.3 86 5-102 3-165 (166)
14 1o97_C Electron transferring f 94.7 0.14 4.7E-06 48.4 9.8 30 16-45 32-67 (264)
15 1efp_B ETF, protein (electron 90.5 1.4 4.9E-05 41.0 10.1 51 53-104 167-226 (252)
16 1efv_B Electron transfer flavo 89.5 1.4 4.8E-05 41.2 9.1 52 53-105 170-230 (255)
17 1t9b_A Acetolactate synthase, 54.0 9.8 0.00034 40.1 4.3 115 141-259 293-429 (677)
18 2q28_A Oxalyl-COA decarboxylas 43.7 33 0.0011 34.7 6.2 115 142-259 215-334 (564)
19 1ozh_A ALS, acetolactate synth 41.1 96 0.0033 31.3 9.2 114 140-259 209-336 (566)
20 2c31_A Oxalyl-COA decarboxylas 40.6 37 0.0013 34.4 6.0 116 142-259 217-338 (568)
21 1q1a_A HST2 protein; ternary c 39.5 23 0.0008 33.2 4.0 64 195-259 211-278 (289)
22 3lq1_A 2-succinyl-5-enolpyruvy 38.6 37 0.0013 34.6 5.6 116 140-259 226-353 (578)
23 2pgn_A Cyclohexane-1,2-dione h 37.5 52 0.0018 33.5 6.6 116 140-259 207-334 (589)
24 3eya_A Pyruvate dehydrogenase 37.3 78 0.0027 31.9 7.8 104 145-259 208-324 (549)
25 4feg_A Pyruvate oxidase; carba 36.4 1.5E+02 0.0052 30.2 9.9 108 145-259 219-338 (603)
26 2ixd_A LMBE-related protein; h 34.1 31 0.0011 31.5 3.8 49 278-326 61-109 (242)
27 3glr_A NAD-dependent deacetyla 33.3 52 0.0018 31.1 5.4 64 195-259 197-264 (285)
28 1ybh_A Acetolactate synthase, 32.7 98 0.0033 31.4 7.7 110 145-259 221-342 (590)
29 2iht_A Carboxyethylarginine sy 32.4 73 0.0025 32.3 6.7 115 140-259 218-351 (573)
30 2hjh_A NAD-dependent histone d 31.1 60 0.002 31.4 5.5 64 195-261 255-319 (354)
31 3p9x_A Phosphoribosylglycinami 26.5 53 0.0018 29.7 3.9 73 259-336 29-101 (211)
32 2uz1_A Benzaldehyde lyase; thi 26.5 96 0.0033 31.2 6.3 117 140-259 206-334 (563)
33 1q14_A HST2 protein; histone d 26.3 40 0.0014 33.0 3.3 64 195-259 219-286 (361)
34 1uan_A Hypothetical protein TT 26.0 42 0.0014 30.1 3.2 47 279-325 60-106 (227)
35 2pan_A Glyoxylate carboligase; 25.8 80 0.0027 32.3 5.6 113 143-258 231-356 (616)
36 1s5p_A NAD-dependent deacetyla 24.6 42 0.0015 30.4 2.9 59 197-258 169-230 (235)
37 1j8f_A SIRT2, sirtuin 2, isofo 24.2 82 0.0028 30.1 5.0 64 195-259 220-303 (323)
38 3vot_A L-amino acid ligase, BL 22.0 1.3E+02 0.0044 28.8 6.0 77 255-340 24-100 (425)
39 3tqr_A Phosphoribosylglycinami 21.7 1.1E+02 0.0039 27.4 5.2 75 258-337 30-104 (215)
40 3av3_A Phosphoribosylglycinami 20.4 1.2E+02 0.0042 26.9 5.1 74 260-338 31-104 (212)
41 4iao_A NAD-dependent histone d 20.1 1.3E+02 0.0045 30.7 5.7 64 195-261 393-457 (492)
No 1
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=100.00 E-value=9.6e-59 Score=453.34 Aligned_cols=225 Identities=50% Similarity=0.753 Sum_probs=203.0
Q ss_pred ccceEEEEEccCCccChHHHHHHHHHHHhCCcEEEEEeCCCcc-------------------------------------
Q psy15579 5 FESTIIIGEHADGKLSASTLSAITAAQKIGGDISVLVAGSKVA------------------------------------- 47 (368)
Q Consensus 5 ~~~i~v~~e~~~g~~~~~~~e~~~~a~~l~~~v~~~~~g~~~~------------------------------------- 47 (368)
||++|||+||++|++++.++|+|++|++|+++++++++|++.+
T Consensus 1 ~m~~lv~~e~~~g~l~~~~~eal~aA~~La~~V~av~~G~~~~~~~~~a~~a~GaDkv~~v~d~~l~~~~~~~~a~~La~ 80 (315)
T 1efv_A 1 MQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILA 80 (315)
T ss_dssp -CEEEEECCEETTEECTHHHHHHHHHHTTTSEEEEEEEESCCHHHHHHHHHSTTCCEEEEEECGGGTTCCHHHHHHHHHH
T ss_pred CceEEEEEEccCCCcCHHHHHHHHHHHHhcCcEEEEEECCchHHHHHHHHHhcCCCEEEEecCchhccCCHHHHHHHHHH
Confidence 5779999999999999999999999999988999999997632
Q ss_pred -----------------------------------cc---------------cceeeEEEeCCCcEEEEEcCCCCCCCcC
Q psy15579 48 -----------------------------------DV---------------SNAILTLKSKDPVKVVTVRGTSFPPAAK 77 (368)
Q Consensus 48 -----------------------------------d~---------------g~~~~~i~~~~~p~~~tvrpg~f~~~~~ 77 (368)
|| ||.++++.+++.|+|+||||++|++.+.
T Consensus 81 li~~~~pdlVL~g~ts~G~~laprlAa~L~~~~vtdv~~l~~~~~~~R~~~gG~~~~tv~~~~~p~viTVr~~~f~~~~~ 160 (315)
T 1efv_A 81 TQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAAT 160 (315)
T ss_dssp HHHHHCCSEEEEESSHHHHHHHHHHHHHHTCCCEEEECEEEETTEEEEEETTTTEEEEEEECCSSEEEEECGGGSCCCCS
T ss_pred HHHhcCCCEEEEcCCCCcchHHHHHHHHhCCCccccEEEeccCCEEEEEcCCCEEEEEEEeCCCCeEEEEcCCCCCCCCC
Confidence 11 9999999999888899999999997664
Q ss_pred -CCCceEEEeeccccccCCceEEEeeeecCCCCCCCCCCCEEEEeCcccccccchhhhhhhhhhhhhccccCcccccchh
Q psy15579 78 -GGSASVEALANASVEANKLSEWVGQELSKSDRPDLGSAKIVVSGGRGLKSADNFKLLYTLADKLGAAVGRGLKSADNFK 156 (368)
Q Consensus 78 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~vV~~GrG~~~~e~~~~~~~~~~~~~~~~g~~~~~~~~~~ 156 (368)
+++++++.++... ....++++....++++++||++|++|||||||++++|||+++
T Consensus 161 ~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~L~~A~ivVsgGrG~~~~e~f~~~---------------------- 216 (315)
T 1efv_A 161 SGGSASSEKASSTS--PVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLL---------------------- 216 (315)
T ss_dssp SSCCCEEEECCCCC--CCCSEEEEEEEECCCCSCCGGGCSEEEEECGGGCSTGGGHHH----------------------
T ss_pred CCCCcceEEeccCC--CccceEEEEEEecccCCcCcCCCCEEEEcCCcCCChHHHHHH----------------------
Confidence 6678888776531 223466555554557889999999999999999999999999
Q ss_pred hHHHHHHHhcCcccchHHhHhCCCccccccccCCCceecCceeEeeccccceeechhhhccCCCCCcceeEeecccCCcc
Q psy15579 157 LLYTLADKLGAAVGASRAAVDAGFVPNDMQIGQTGKIIAPQVSKISGVTKVLTVENDALKGLLPENLAPLIVSAQNAGKY 236 (368)
Q Consensus 157 ~~~~LA~~Lg~~vg~sR~~~~~gw~~~~~qIGqtG~~v~P~lyia~GISGai~~~~~~~~g~~~~~~~V~I~~e~~ag~~ 236 (368)
++||++|||++|||||++|+||+|+++|||||||+|+|+||||||||||+|| ++||.++++||+||+|+++|+|
T Consensus 217 --~~LA~~Lga~vgaSR~~vd~Gw~~~~~QVGqTGk~V~P~lYiA~GISGAiQH----laGm~~s~~IVAIN~D~~ApIf 290 (315)
T 1efv_A 217 --YDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQH----LAGMKDSKTIVAINKDPEAPIF 290 (315)
T ss_dssp --HHHHHHHTCEEEECHHHHHTTSSCGGGBBSTTSBCCCCSEEEEESCCCCHHH----HTTTTTCSEEEEEESCTTCGGG
T ss_pred --HHHHHHhCCceeecHHHHhCCCCCHHheeccCCcccCcceEEEecccCcHHH----HhhcccCCEEEEEeCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cccccccccchhhhHHHHHHhhc
Q psy15579 237 THILAGASSMGKSLLPRVAALLD 259 (368)
Q Consensus 237 ~~~~~elv~~ak~llp~LA~~l~ 259 (368)
+.+||+++++.++++|.|.+++.
T Consensus 291 ~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 291 QVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp GTCSEEEESCHHHHHHHHHHHTC
T ss_pred hhcCeEEeeeHHHHHHHHHHHHh
Confidence 99999999999999999998875
No 2
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=100.00 E-value=3.1e-58 Score=448.34 Aligned_cols=221 Identities=43% Similarity=0.664 Sum_probs=200.8
Q ss_pred ceEEEEEccCCccC-hHHHHHHHHHHHhCCcEEEEEeCCCcc--------------------------------------
Q psy15579 7 STIIIGEHADGKLS-ASTLSAITAAQKIGGDISVLVAGSKVA-------------------------------------- 47 (368)
Q Consensus 7 ~i~v~~e~~~g~~~-~~~~e~~~~a~~l~~~v~~~~~g~~~~-------------------------------------- 47 (368)
+||||+||++|+++ +.++|+|++|++|| +++++++|++.+
T Consensus 1 ~ilv~~e~~~g~l~~~~~~eal~aA~~Lg-~V~av~~G~~~~~~~~~~a~a~GaDkv~~v~d~~l~~~~~~~~a~~La~~ 79 (307)
T 1efp_A 1 AVLLLGEVTNGALNRDATAKAVAAVKALG-DVTVLCAGASAKAAAEEAAKIAGVAKVLVAEDALYGHRLAEPTAALIVGL 79 (307)
T ss_dssp CEEEECCBSSSCBCHHHHHHHHHHHGGGS-CEEEEEEETTCHHHHHHHHTSTTEEEEEEEECGGGTTCCHHHHHHHHHHH
T ss_pred CEEEEEeccCCEeCchhhHHHHHHHHHhC-CEEEEEECCchHHHHHHHHHhcCCCEEEEecCchhccCCHHHHHHHHHHH
Confidence 38999999999999 99999999999995 999999997522
Q ss_pred --------------------------------cc---------------cceeeEEEeCCCcEEEEEcCCCCCCCcCCCC
Q psy15579 48 --------------------------------DV---------------SNAILTLKSKDPVKVVTVRGTSFPPAAKGGS 80 (368)
Q Consensus 48 --------------------------------d~---------------g~~~~~i~~~~~p~~~tvrpg~f~~~~~~~~ 80 (368)
|| ||.++++.++++|+|+||||++|++.+.+++
T Consensus 80 ~~~pd~VL~g~ts~G~~laprlAa~L~~~~vtdv~~l~~~~~~~R~~~gG~~~~tv~~~~~p~viTVr~~~f~~~~~~~~ 159 (307)
T 1efp_A 80 AGDYSHIAAPATTDAKNVMPRVAALLDVMVLSDVSAILDADTFERPIYAGNAIQVVKSKDAKKVFTIRTASFDAAGEGGT 159 (307)
T ss_dssp HTTCSEEEEESSHHHHHHHHHHHHHTTCCEEEEESEECSSSEEEEEEGGGTEEEEEEECSSSEEEEECGGGSCCCCSSCC
T ss_pred ccCCCEEEEeCCcchhhHHHHHHHHhCCCccccEEEEccCCEEEEECCCCEEEEEEEeCCCCEEEEEcCCCCCCCCCCCC
Confidence 11 9999999999899999999999997654567
Q ss_pred ceEEEeeccccccCCceEEEeeeecCCCCCCCCCCCEEEEeCcccccccchhhhhhhhhhhhhccccCcccccchhhHHH
Q psy15579 81 ASVEALANASVEANKLSEWVGQELSKSDRPDLGSAKIVVSGGRGLKSADNFKLLYTLADKLGAAVGRGLKSADNFKLLYT 160 (368)
Q Consensus 81 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~vV~~GrG~~~~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 160 (368)
++++.++... ....+++++.....++++||++|++||||||||+++|||+++ ++
T Consensus 160 ~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~L~~A~ivVsgGRG~~~~e~f~~~------------------------~~ 213 (307)
T 1efp_A 160 APVTETAAAA--DPGLSSWVADEVAESDRPELTSARRVVSGGRGLGSKESFAII------------------------EE 213 (307)
T ss_dssp CCCBCCCCCC--CCCSEEEEEEEECCCCSCCTTTCSEEEEECGGGCSSSTTHHH------------------------HH
T ss_pred cceEEecccc--CcCceEEEEEEecccCCCCcCCCCEEEEcCCcCCCHHHHHHH------------------------HH
Confidence 7777665432 225678787766667889999999999999999999999999 99
Q ss_pred HHHHhcCcccchHHhHhCCCccccccccCCCceecCceeEeeccccceeechhhhccCCCCCcceeEeecccCCcccccc
Q psy15579 161 LADKLGAAVGASRAAVDAGFVPNDMQIGQTGKIIAPQVSKISGVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHIL 240 (368)
Q Consensus 161 LA~~Lg~~vg~sR~~~~~gw~~~~~qIGqtG~~v~P~lyia~GISGai~~~~~~~~g~~~~~~~V~I~~e~~ag~~~~~~ 240 (368)
||++|||++|||||++|+||+|+++|||||||+|+|+||||||||||+|| ++||.++++||+||+|+++|+|+.+|
T Consensus 214 LA~~Lga~vgaSR~~vd~Gw~~~~~QVGqTGk~V~P~lYiA~GISGAiQH----laGm~~s~~IVAIN~D~~ApIF~~AD 289 (307)
T 1efp_A 214 LADKLGAAVGASRAAVDSGYAPNDWQVGQTGKVVAPELYVAVGISGAIQH----LAGMKDSKVIVAINKDEEAPIFQIAD 289 (307)
T ss_dssp HHHHHTCEEEECHHHHHTTSSCGGGBBSSSSBCCCCSEEEEESCCCCHHH----HTTTTTCSEEEEEESCTTCGGGGTCS
T ss_pred HHHHhCCceeecHHHHhCCCCChhhEeccCCcccCCceEEEEeccCcHHH----HhhhccCCEEEEEeCCCCCCcccccC
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cccccchhhhHHHHHHhh
Q psy15579 241 AGASSMGKSLLPRVAALL 258 (368)
Q Consensus 241 ~elv~~ak~llp~LA~~l 258 (368)
|+++++.++++|.|.+++
T Consensus 290 ygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 290 YGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp EEEESCHHHHHHHHHHTC
T ss_pred eEEeeeHHHHHHHHHhhC
Confidence 999999999999998753
No 3
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=100.00 E-value=1.5e-56 Score=438.60 Aligned_cols=223 Identities=24% Similarity=0.340 Sum_probs=197.1
Q ss_pred ceEEEEEccCCccChHHHHHHHHHHHhC--C--cEEEEEeCCCcc-----------------------------------
Q psy15579 7 STIIIGEHADGKLSASTLSAITAAQKIG--G--DISVLVAGSKVA----------------------------------- 47 (368)
Q Consensus 7 ~i~v~~e~~~g~~~~~~~e~~~~a~~l~--~--~v~~~~~g~~~~----------------------------------- 47 (368)
.||||+||.+|++++.++|+|++|++|+ + +++++++|++.+
T Consensus 2 ~ilv~~e~~~g~l~~~~~eal~~A~~L~e~g~~~V~av~~G~~~~~~~~~a~a~GaDkv~~v~d~~l~~~~~~~a~~La~ 81 (320)
T 1o97_D 2 KILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALSVNGVDELVVVKGSSIDFDPDVFEASVSA 81 (320)
T ss_dssp EEEEECCEETTEECTHHHHHHHHHHHHCSSTTCEEEEEEESTTGGGGHHHHCBTTCSEEEEEECSCSSCCHHHHHHHHHH
T ss_pred eEEEEEeCcCCCcCHHHHHHHHHHHHHhhCCCCcEEEEEECCcHHHHHHHHHhcCCceEEEEeCcccCCCHHHHHHHHHH
Confidence 5899999999999999999999999995 4 899999996521
Q ss_pred -----------------------------------cc------------------cceeeEEEeCCC-cEEEEEcCCCCC
Q psy15579 48 -----------------------------------DV------------------SNAILTLKSKDP-VKVVTVRGTSFP 73 (368)
Q Consensus 48 -----------------------------------d~------------------g~~~~~i~~~~~-p~~~tvrpg~f~ 73 (368)
|| ||.++++.+++. |+|+||||++|+
T Consensus 82 ~i~~~~pdlVL~g~ts~G~~laprlAa~L~~~~vtdv~~l~~~~~~l~~~R~~~gG~~~~ti~~~~~~p~viTVr~~~f~ 161 (320)
T 1o97_D 82 LIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFK 161 (320)
T ss_dssp HHHHHCCSEEEEECSHHHHTTHHHHHHTSSCEEEEEECEEEEETTEEEEEEEETTTTEEEEEECTTCSCEEEEECTTSSC
T ss_pred HHHhcCCCEEEEeCCCchhhHHHHHHHHhCCCccccEEEEEecCCeEEEEEEcCCCEEEEEEEecCCCCEEEEEcCCCCC
Confidence 11 899999999876 999999999999
Q ss_pred CCcCCCCceEEEeeccccccCCceEEEeeeecC-CCCCCCCCCCEEEEeCcccccccchhhhhhhhhhhhhccccCcccc
Q psy15579 74 PAAKGGSASVEALANASVEANKLSEWVGQELSK-SDRPDLGSAKIVVSGGRGLKSADNFKLLYTLADKLGAAVGRGLKSA 152 (368)
Q Consensus 74 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~A~~vV~~GrG~~~~e~~~~~~~~~~~~~~~~g~~~~~~ 152 (368)
+.+.+++++++.++.. . ....++++....++ ++++||++|++||||||||+++|||+++
T Consensus 162 ~~~~~~~~~v~~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~A~ivVsgGRG~~~~e~f~~~------------------ 221 (320)
T 1o97_D 162 PLEGAGSPVVSNVDAP-S-VQSRSQNKDYVEVGGGNDIDITTVDFIMSIGRGIGEETNVEQF------------------ 221 (320)
T ss_dssp CCCSBCCCEEEEEECC-C-CCCSEEEEEEECCC---CCCCSCSSEEEEECGGGCSGGGHHHH------------------
T ss_pred CCCCCCCcceEEeccC-C-CcCceEEEEEEeccccCCcCcCCCCEEEEcCCccCChHHHHHH------------------
Confidence 7644567788887654 1 22336655444333 6789999999999999999999999999
Q ss_pred cchhhHHHHHHHhcCcccchHHhHhCCCccccccccCCCceecC-ceeEeeccccceeechhhhccCCCCCcceeEeecc
Q psy15579 153 DNFKLLYTLADKLGAAVGASRAAVDAGFVPNDMQIGQTGKIIAP-QVSKISGVTKVLTVENDALKGLLPENLAPLIVSAQ 231 (368)
Q Consensus 153 ~~~~~~~~LA~~Lg~~vg~sR~~~~~gw~~~~~qIGqtG~~v~P-~lyia~GISGai~~~~~~~~g~~~~~~~V~I~~e~ 231 (368)
++||++|||++|||||++|+||+|+++|||||||+|+| +||||||||||+|| ++||.++++||+||+|+
T Consensus 222 ------~~LA~~Lga~vgaSR~~vd~Gw~~~~~QVGqTGk~V~P~~lYiA~GISGAiQH----laGm~~s~~IVAIN~D~ 291 (320)
T 1o97_D 222 ------RELADEAGATLCCSRPIADAGWLPKSRQVGQSGKVVGSCKLYVAMGISGSIQH----MAGMKHVPTIIAVNTDP 291 (320)
T ss_dssp ------HHHHHHHTCEEEECHHHHHTTSSCGGGBBSTTSBCCTTCSEEEEESCCCCHHH----HHHHTTCSEEEEECSCT
T ss_pred ------HHHHHHhCCceeecHHHHhCCCCChhhEeecCceEecccceEEEEeccCcHHH----HhhcccCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999 99999999999999 99999999999999999
Q ss_pred cCCcccccccccccchhhhHHHHHHhhc
Q psy15579 232 NAGKYTHILAGASSMGKSLLPRVAALLD 259 (368)
Q Consensus 232 ~ag~~~~~~~elv~~ak~llp~LA~~l~ 259 (368)
++|+|+.+||+++++.++++|.|.+++.
T Consensus 292 ~ApIF~~ADygiVgDl~~vvP~L~~~l~ 319 (320)
T 1o97_D 292 GASIFTIAKYGIVADIFDIEEELKAQLA 319 (320)
T ss_dssp TCGGGGTCSEEECSCHHHHHHHHHHHC-
T ss_pred CCCcccccCeEEeeeHHHHHHHHHHHHh
Confidence 9999999999999999999999998763
No 4
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.5e-26 Score=213.42 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=128.1
Q ss_pred ceeEeecccCCcccccccccccchhhhHHHHHHhhcCCceEEEecCC-CCchhhhcccccccEEEEEeCccccCCCCccH
Q psy15579 224 APLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVSPISDIIDIK-SPDTFQVSKISGVTKVLTVENDALKGLLPENL 302 (368)
Q Consensus 224 ~V~I~~e~~ag~~~~~~~elv~~ak~llp~LA~~l~~~v~av~ig~~-~~~~~el~~~~GadkV~~v~~~~l~~y~~e~y 302 (368)
-|||+.|++++.+++.++|+++.+++ |+++++..+.++++|.. .+.+.++..| |+|+||+++++.|++|+++.|
T Consensus 5 ~ilV~~E~~~g~l~~~s~ell~~A~~----La~~~g~~v~av~~G~~~~~~~~~~~~~-Gad~v~~v~~~~~~~~~~~~~ 79 (217)
T 3ih5_A 5 NLFVYCEIEEGIVADVSLELLTKGRS----LANELNCQLEAVVAGTGLKEIEKQILPY-GVDKLHVFDAEGLYPYTSLPH 79 (217)
T ss_dssp CEEEECCEETTEECHHHHHHHHHHHH----HHHHHTCCEEEEEEESCCTTTHHHHGGG-TCSEEEEEECGGGSSCCHHHH
T ss_pred cEEEEEECcCCEECHHHHHHHHHHHH----HHHhcCCeEEEEEECCCHHHHHHHHHhc-CCCEEEEecCcccccCCHHHH
Confidence 47999999999999999999999999 79999999999999864 2345788888 999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEeCCCcCCcchHHHHHhhcCCCcccceeeecCC-------------C-EEEeeecCCCcc-ccc
Q psy15579 303 APLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVSPISDIIDIKSP-------------D-TFVRTIYELEPS-RVA 367 (368)
Q Consensus 303 a~aLa~l~~~~~p~~VL~~aT~~GrdlApRLAarL~aglvsDv~~l~~~-------------~-~~~RpvfgGk~~-~~~ 367 (368)
+++|++++++++|++||+|+|.+||+++||||++|++|+++||++|+.+ . +++||+|||+.. ++.
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~G~~laprlAa~L~~~~~sdv~~l~~~~~~~~~~~~~~~~~l~~~Rp~~gG~~~ati~ 159 (217)
T 3ih5_A 80 TSILVNLFKEEQPQICLMGATVIGRDLGPRVSSALTSGLTADCTSLEIGDHEDKKEGKVYKNLLYQIRPAFGGNIVATIV 159 (217)
T ss_dssp HHHHHHHHHHHCCSEEEEECSHHHHHHHHHHHHHTTCCCBCSCSEEEEEEEEETTTTEEEEEEEEEEEESSSSSCEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHhCCCccceEEEEEecCCccccccccccccEEEEEECCCCEEEEEEE
Confidence 9999999999999999999999999999999999999999999999832 1 799999999976 666
Q ss_pred C
Q psy15579 368 C 368 (368)
Q Consensus 368 c 368 (368)
|
T Consensus 160 ~ 160 (217)
T 3ih5_A 160 N 160 (217)
T ss_dssp C
T ss_pred e
Confidence 5
No 5
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=99.85 E-value=1.9e-22 Score=196.97 Aligned_cols=135 Identities=43% Similarity=0.648 Sum_probs=119.2
Q ss_pred eeEeecccCCcccccccccccchhhhHHHHHHhhcCCceEEEecCCCC-chhhh-cccccccEEEEEeCccccCCCCccH
Q psy15579 225 PLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVSPISDIIDIKSP-DTFQV-SKISGVTKVLTVENDALKGLLPENL 302 (368)
Q Consensus 225 V~I~~e~~ag~~~~~~~elv~~ak~llp~LA~~l~~~v~av~ig~~~~-~~~el-~~~~GadkV~~v~~~~l~~y~~e~y 302 (368)
+||+.|++++.+++.++|+++.+++ |++ .+.++++|...+ ...++ ..+ |+|+||+++++.|++|+++.|
T Consensus 4 ~lv~~e~~~g~l~~~~~eal~aA~~----La~----~V~av~~G~~~~~~~~~a~~a~-GaDkv~~v~d~~l~~~~~~~~ 74 (315)
T 1efv_A 4 TLVIAEHANDSLAPITLNTITAATR----LGG----EVSCLVAGTKCDKVAQDLCKVA-GIAKVLVAQHDVYKGLLPEEL 74 (315)
T ss_dssp EEEECCEETTEECTHHHHHHHHHHT----TTS----EEEEEEEESCCHHHHHHHHHST-TCCEEEEEECGGGTTCCHHHH
T ss_pred EEEEEEccCCCcCHHHHHHHHHHHH----hcC----cEEEEEECCchHHHHHHHHHhc-CCCEEEEecCchhccCCHHHH
Confidence 6999999999999999999999998 443 788888885411 22455 466 999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEeCCCcCCcchHHHHHhhcCCCcccceeeecCCCEEEeeecCCCcc-cccC
Q psy15579 303 APLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVSPISDIIDIKSPDTFVRTIYELEPS-RVAC 368 (368)
Q Consensus 303 a~aLa~l~~~~~p~~VL~~aT~~GrdlApRLAarL~aglvsDv~~l~~~~~~~RpvfgGk~~-~~~c 368 (368)
+++|++++++++|++||+|+|.+||+++||||++|++++++||++++.+++++||+|+|+.. ++.|
T Consensus 75 a~~La~li~~~~pdlVL~g~ts~G~~laprlAa~L~~~~vtdv~~l~~~~~~~R~~~gG~~~~tv~~ 141 (315)
T 1efv_A 75 TPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKC 141 (315)
T ss_dssp HHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHHHTCCCEEEECEEEETTEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcchHHHHHHHHhCCCccccEEEeccCCEEEEEcCCCEEEEEEEe
Confidence 99999999999999999999999999999999999999999999998766999999999865 5443
No 6
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=99.85 E-value=4e-22 Score=195.01 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=120.7
Q ss_pred eeEeecccCCcccccccccccchhhhHHHHHHhhc-CCceEEEecCCCCchhh-hcccccccEEEEEeCccccCCCCccH
Q psy15579 225 PLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLD-VSPISDIIDIKSPDTFQ-VSKISGVTKVLTVENDALKGLLPENL 302 (368)
Q Consensus 225 V~I~~e~~ag~~~~~~~elv~~ak~llp~LA~~l~-~~v~av~ig~~~~~~~e-l~~~~GadkV~~v~~~~l~~y~~e~y 302 (368)
|||+.|+.++++++.++|+++.+++ |++ ++ ..+.++++|...+...+ +..+ |+|+||+++++.| +|+++.|
T Consensus 3 ilv~~e~~~g~l~~~~~eal~~A~~----L~e-~g~~~V~av~~G~~~~~~~~~a~a~-GaDkv~~v~d~~l-~~~~~~~ 75 (320)
T 1o97_D 3 ILVIAEHRRNDLRPVSLELIGAANG----LKK-SGEDKVVVAVIGSQADAFVPALSVN-GVDELVVVKGSSI-DFDPDVF 75 (320)
T ss_dssp EEEECCEETTEECTHHHHHHHHHHH----HCS-STTCEEEEEEESTTGGGGHHHHCBT-TCSEEEEEECSCS-SCCHHHH
T ss_pred EEEEEeCcCCCcCHHHHHHHHHHHH----Hhh-CCCCcEEEEEECCcHHHHHHHHHhc-CCceEEEEeCccc-CCCHHHH
Confidence 6999999999999999999999998 676 55 47889988854222344 4566 9999999999999 9999999
Q ss_pred HHHHHHHHHhCCCcEEEeCCCcCCcchHHHHHhhcCCCcccceeeecC-CC--EEEeeecCCCcc-cccC
Q psy15579 303 APLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVSPISDIIDIKS-PD--TFVRTIYELEPS-RVAC 368 (368)
Q Consensus 303 a~aLa~l~~~~~p~~VL~~aT~~GrdlApRLAarL~aglvsDv~~l~~-~~--~~~RpvfgGk~~-~~~c 368 (368)
+++|++++++++|++||+|+|.+||+++||||++|++++++||++++. ++ +++||+|+|+.. ++.|
T Consensus 76 a~~La~~i~~~~pdlVL~g~ts~G~~laprlAa~L~~~~vtdv~~l~~~~~~l~~~R~~~gG~~~~ti~~ 145 (320)
T 1o97_D 76 EASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVDF 145 (320)
T ss_dssp HHHHHHHHHHHCCSEEEEECSHHHHTTHHHHHHTSSCEEEEEECEEEEETTEEEEEEEETTTTEEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCchhhHHHHHHHHhCCCccccEEEEEecCCeEEEEEEcCCCEEEEEEEe
Confidence 999999999999999999999999999999999999999999999985 45 899999999865 5554
No 7
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=99.83 E-value=2.6e-21 Score=188.33 Aligned_cols=132 Identities=34% Similarity=0.394 Sum_probs=115.8
Q ss_pred eeEeecccCCccc-ccccccccchhhhHHHHHHhhcCCceEEEecCCCCch--hhhcccccccEEEEEeCccccCCCCcc
Q psy15579 225 PLIVSAQNAGKYT-HILAGASSMGKSLLPRVAALLDVSPISDIIDIKSPDT--FQVSKISGVTKVLTVENDALKGLLPEN 301 (368)
Q Consensus 225 V~I~~e~~ag~~~-~~~~elv~~ak~llp~LA~~l~~~v~av~ig~~~~~~--~el~~~~GadkV~~v~~~~l~~y~~e~ 301 (368)
|||+.|+++++++ +.++|+++.++++ + .+.++++|...+.. .++..+ |+|+||+++++.|++|+++.
T Consensus 2 ilv~~e~~~g~l~~~~~~eal~aA~~L--------g-~V~av~~G~~~~~~~~~~a~a~-GaDkv~~v~d~~l~~~~~~~ 71 (307)
T 1efp_A 2 VLLLGEVTNGALNRDATAKAVAAVKAL--------G-DVTVLCAGASAKAAAEEAAKIA-GVAKVLVAEDALYGHRLAEP 71 (307)
T ss_dssp EEEECCBSSSCBCHHHHHHHHHHHGGG--------S-CEEEEEEETTCHHHHHHHHTST-TEEEEEEEECGGGTTCCHHH
T ss_pred EEEEEeccCCEeCchhhHHHHHHHHHh--------C-CEEEEEECCchHHHHHHHHHhc-CCCEEEEecCchhccCCHHH
Confidence 7999999999999 9999999999983 3 78888888541111 234455 99999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCcCCcchHHHHHhhcCCCcccceeeecCCCEEEeeecCCCcc-cccC
Q psy15579 302 LAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVSPISDIIDIKSPDTFVRTIYELEPS-RVAC 368 (368)
Q Consensus 302 ya~aLa~l~~~~~p~~VL~~aT~~GrdlApRLAarL~aglvsDv~~l~~~~~~~RpvfgGk~~-~~~c 368 (368)
|+++|+++ +++|++||+|+|.+||+++||||++|++++++||++++.+++++||+|+|+.. ++.|
T Consensus 72 ~a~~La~~--~~~pd~VL~g~ts~G~~laprlAa~L~~~~vtdv~~l~~~~~~~R~~~gG~~~~tv~~ 137 (307)
T 1efp_A 72 TAALIVGL--AGDYSHIAAPATTDAKNVMPRVAALLDVMVLSDVSAILDADTFERPIYAGNAIQVVKS 137 (307)
T ss_dssp HHHHHHHH--HTTCSEEEEESSHHHHHHHHHHHHHTTCCEEEEESEECSSSEEEEEEGGGTEEEEEEE
T ss_pred HHHHHHHH--ccCCCEEEEeCCcchhhHHHHHHHHhCCCccccEEEEccCCEEEEECCCCEEEEEEEe
Confidence 99999999 66999999999999999999999999999999999998767999999999865 5543
No 8
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum}
Probab=99.75 E-value=5.1e-19 Score=158.07 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=99.3
Q ss_pred ceeEeecccCCcccccccccccchhhhHHHHHHhhcCCceEEEecCCCCchhhhcccccccEEEEEeCccccCCCCccHH
Q psy15579 224 APLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVSPISDIIDIKSPDTFQVSKISGVTKVLTVENDALKGLLPENLA 303 (368)
Q Consensus 224 ~V~I~~e~~ag~~~~~~~elv~~ak~llp~LA~~l~~~v~av~ig~~~~~~~el~~~~GadkV~~v~~~~l~~y~~e~ya 303 (368)
.|||+.|+.+ .++|+++.+|. +..+.++++|.. .+ ..+ |+|+||++++ ++ +++.|+
T Consensus 5 ~vlV~~E~~~-----~~~Ell~~ar~---------~g~v~av~~G~~--~~---~~~-Gad~v~~v~~---~~-~~e~~a 60 (166)
T 3fet_A 5 KFLTVSDDMN-----FLRQVNTLVAG---------KGDMDSVIIGEG--DA---KGL-GSKVLYRAKK---GT-PFDAVS 60 (166)
T ss_dssp EEEEEESSHH-----HHHHHHHHHGG---------GEEEEEEEESCC--CC---TTC-CCSEEEEECT---TC-CHHHHH
T ss_pred EEEEEEcCcc-----HHHHHHHhhcc---------CCcEEEEEECcc--hH---HHc-CCCEEEEeCC---CC-ChHHHH
Confidence 4799999643 78999988772 247889999853 22 334 9999999994 33 789999
Q ss_pred HHHHHHHHhCCCcEEEeCCCcCCcchHHHHHhhcCCCcccceeeecCC-C--EEEeeecCCCcc-cccC
Q psy15579 304 PLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVSPISDIIDIKSP-D--TFVRTIYELEPS-RVAC 368 (368)
Q Consensus 304 ~aLa~l~~~~~p~~VL~~aT~~GrdlApRLAarL~aglvsDv~~l~~~-~--~~~RpvfgGk~~-~~~c 368 (368)
++|+++++ +|++||+|+|.+||+++||||++|++|+++||++++.+ + +++||+|+|+.. +++|
T Consensus 61 ~~l~~~~~--~p~~Vl~g~t~~g~~vaprlAa~L~~~~~sdv~~l~~~~~~~~~~R~~~gG~~~~tv~~ 127 (166)
T 3fet_A 61 EGILKIAG--NYDYIAIGSTEVGREIAGYLSFKTGFYTATEIFSLEFNGQKAHTKRFFYGGKTVIEEES 127 (166)
T ss_dssp HHHHHHHT--TCSEEEEECSHHHHHHHHHHHHHHCCCEEEEEEEEEESSSSEEEEEEEGGGTEEEEEEE
T ss_pred HHHHHHHc--CCCEEEEcCCCccccHHHHHHHHhCCCceeeEEEEEecCCEEEEEEEccCCEEEEEEEe
Confidence 99999998 99999999999999999999999999999999999855 3 679999999964 5554
No 9
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=99.69 E-value=1.4e-17 Score=158.77 Aligned_cols=131 Identities=13% Similarity=0.036 Sum_probs=111.9
Q ss_pred cCCcccccccccccchhhhHHHHHHhhcC--CceEEEecCC-C-CchhhhcccccccEEEEEeCccccCCCCccHHHHHH
Q psy15579 232 NAGKYTHILAGASSMGKSLLPRVAALLDV--SPISDIIDIK-S-PDTFQVSKISGVTKVLTVENDALKGLLPENLAPLIV 307 (368)
Q Consensus 232 ~ag~~~~~~~elv~~ak~llp~LA~~l~~--~v~av~ig~~-~-~~~~el~~~~GadkV~~v~~~~l~~y~~e~ya~aLa 307 (368)
-...+++.+++++..+++ |.++++. .++++++|.. . +...++..+ |+|++|+++++.|.+|+++.|+++|+
T Consensus 31 ~~~~lnp~d~~ale~A~~----Lke~~g~~~~V~av~~G~~~~~~~lr~ala~-GaD~vi~v~d~~~~~~~~~~~a~~La 105 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMK----IKESSDTDVEVVVVSVGPDRVDESLRKCLAK-GADRAVRVWDDAAEGSDAIVVGRILT 105 (264)
T ss_dssp EEEEECHHHHHHHHHHHH----HHHHCSSCCEEEEEEESCGGGHHHHHHHHHT-TCSEEEEECCGGGTTCCHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHH----HHHhcCCCceEEEEEeCchhHHHHHHHHHhc-CCCEEEEEcCcccccCCHHHHHHHHH
Confidence 355788999999999998 7888776 7899988842 1 112345556 99999999999999999999999999
Q ss_pred HHHHhCCCcEEEeCCCcCC---cchHHHHHhhcCCCcccceeeecC--CC---EEEeeecCCCccccc
Q psy15579 308 SAQNAGKYTHILAGASSMG---KSLLPRVAALLDVSPISDIIDIKS--PD---TFVRTIYELEPSRVA 367 (368)
Q Consensus 308 ~l~~~~~p~~VL~~aT~~G---rdlApRLAarL~aglvsDv~~l~~--~~---~~~RpvfgGk~~~~~ 367 (368)
+++++.+|++||+|+|+.+ ++++||||++|++++++||++++. ++ +++||+|+|+..+++
T Consensus 106 ~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~l~~~~~~~~~~~~R~i~gG~~~~v~ 173 (264)
T 1o97_C 106 EVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAVIRRELEGGMLQEVE 173 (264)
T ss_dssp HHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEEEECCTTCSEEEEEEECGGGCEEEEE
T ss_pred HHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCcccceEEEEEecCCCeEEEEEEcCCCcEEEEE
Confidence 9999999999999999965 779999999999999999999986 54 899999999844554
No 10
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=99.62 E-value=2e-16 Score=149.99 Aligned_cols=128 Identities=14% Similarity=0.116 Sum_probs=108.1
Q ss_pred CCcccccccccccchhhhHHHHHHhhcC--CceEEEecCCC--CchhhhcccccccEEEEEe-Cccc-cCCCCccHHHHH
Q psy15579 233 AGKYTHILAGASSMGKSLLPRVAALLDV--SPISDIIDIKS--PDTFQVSKISGVTKVLTVE-NDAL-KGLLPENLAPLI 306 (368)
Q Consensus 233 ag~~~~~~~elv~~ak~llp~LA~~l~~--~v~av~ig~~~--~~~~el~~~~GadkV~~v~-~~~l-~~y~~e~ya~aL 306 (368)
...+++.+++++..+++ |.++ +. .++++.+|... +...++..+ |+|++|+++ ++.| .+|+++.|+++|
T Consensus 32 ~~~lnp~d~~Ale~A~~----Lke~-g~~~~V~av~~G~~~a~~~lr~ala~-GaD~vi~v~~d~~~~~~~~~~~~a~~L 105 (252)
T 1efp_B 32 KMSMNPFDEIAVEEAIR----LKEK-GQAEEIIAVSIGVKQAAETLRTALAM-GADRAILVVAADDVQQDIEPLAVAKIL 105 (252)
T ss_dssp CEEECHHHHHHHHHHHH----HHTT-TSCSEEEEEEEESGGGHHHHHHHHHH-TCSEEEEEECCSSTTCCCCHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHH----HHhc-CCCceEEEEEeCChhHHHHHHHHHhc-CCCEEEEEecChhhcccCCHHHHHHHH
Confidence 45788999999999998 6776 65 78888888521 112345555 999999999 9999 899999999999
Q ss_pred HHHHHhCCCcEEEeCCCcCC---cchHHHHHhhcCCCcccceeeecCCC---EEEeeecCCCccccc
Q psy15579 307 VSAQNAGKYTHILAGASSMG---KSLLPRVAALLDVSPISDIIDIKSPD---TFVRTIYELEPSRVA 367 (368)
Q Consensus 307 a~l~~~~~p~~VL~~aT~~G---rdlApRLAarL~aglvsDv~~l~~~~---~~~RpvfgGk~~~~~ 367 (368)
++++++.+|++||+|+|+.+ ++++||||++||+++++||++++.++ +++||+|+| ..+++
T Consensus 106 a~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~l~~~~~~~~v~R~i~gG-~~~v~ 171 (252)
T 1efp_B 106 AAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASKVEIEGAKAKVTREVDGG-LQTIA 171 (252)
T ss_dssp HHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEEEEEEEECSSEEEEEEEETTE-EEEEE
T ss_pred HHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCccccEEEEEEcCCeEEEEEEcCCc-EEEEE
Confidence 99999999999999999965 88999999999999999999998554 899999999 43444
No 11
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=99.62 E-value=2.3e-16 Score=149.82 Aligned_cols=128 Identities=13% Similarity=0.051 Sum_probs=107.7
Q ss_pred CCcccccccccccchhhhHHHHHHhhcC--CceEEEecCCC--CchhhhcccccccEEEEEe-Cccc-cCCCCccHHHHH
Q psy15579 233 AGKYTHILAGASSMGKSLLPRVAALLDV--SPISDIIDIKS--PDTFQVSKISGVTKVLTVE-NDAL-KGLLPENLAPLI 306 (368)
Q Consensus 233 ag~~~~~~~elv~~ak~llp~LA~~l~~--~v~av~ig~~~--~~~~el~~~~GadkV~~v~-~~~l-~~y~~e~ya~aL 306 (368)
.-++++.+++++..+++ |.++ +. .++++.+|... +...++..+ |+|++|+++ ++.| .+|+++.|+++|
T Consensus 35 ~~~lnp~d~~Ale~A~~----Lke~-g~~~~V~av~~G~~~a~~~lr~ala~-GaD~vi~v~~d~~~~~~~~~~~~A~~L 108 (255)
T 1efv_B 35 KHSMNPFCEIAVEEAVR----LKEK-KLVKEVIAVSCGPAQCQETIRTALAM-GADRGIHVEVPPAEAERLGPLQVARVL 108 (255)
T ss_dssp CEEECHHHHHHHHHHHH----HHHT-TSCSEEEEEEEESTTHHHHHHHHHHH-TCSEEEEEECCHHHHTTCCHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHH----HHhc-CCCceEEEEEeCChhHHHHHHHHHhc-CCCEEEEEecChhhcccCCHHHHHHHH
Confidence 44688899999999998 6776 65 78889888531 112345556 999999999 9989 899999999999
Q ss_pred HHHHHhCCCcEEEeCCCcCC---cchHHHHHhhcCCCcccceeeecCCC---EEEeeecCCCccccc
Q psy15579 307 VSAQNAGKYTHILAGASSMG---KSLLPRVAALLDVSPISDIIDIKSPD---TFVRTIYELEPSRVA 367 (368)
Q Consensus 307 a~l~~~~~p~~VL~~aT~~G---rdlApRLAarL~aglvsDv~~l~~~~---~~~RpvfgGk~~~~~ 367 (368)
++++++.+|++||+|+|+.+ ++++||||++||+++++||++++.++ +++||+|+| ..+++
T Consensus 109 a~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v~~l~~~~~~~~v~R~i~gG-~~~v~ 174 (255)
T 1efv_B 109 AKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKLKVEREIDGG-LETLR 174 (255)
T ss_dssp HHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEEEEEETTEEEEEEEETTE-EEEEE
T ss_pred HHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCCCcccceEEEEEcCCeEEEEEEcCCc-EEEEE
Confidence 99999999999999999965 88999999999999999999998544 899999999 43443
No 12
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=9.9e-15 Score=135.33 Aligned_cols=101 Identities=13% Similarity=0.217 Sum_probs=83.2
Q ss_pred ccccceEEEEEccCCccChHHHHHHHHHHHh----CCcEEEEEeCCCcc-------------------------------
Q psy15579 3 ARFESTIIIGEHADGKLSASTLSAITAAQKI----GGDISVLVAGSKVA------------------------------- 47 (368)
Q Consensus 3 ~~~~~i~v~~e~~~g~~~~~~~e~~~~a~~l----~~~v~~~~~g~~~~------------------------------- 47 (368)
|.|++||||+||++|+++++++|+|++|++| |++++++++|++.+
T Consensus 1 ~~m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~~~~~~~~~~~Gad~v~~v~~~~~~~~~~~~~a 80 (217)
T 3ih5_A 1 SNANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKEIEKQILPYGVDKLHVFDAEGLYPYTSLPHT 80 (217)
T ss_dssp --CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCCTTTHHHHGGGTCSEEEEEECGGGSSCCHHHHH
T ss_pred CCcccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCEEEEecCcccccCCHHHHH
Confidence 4688999999999999999999999999998 88999999998632
Q ss_pred -------------------------------------------------c------------c--------cceeeEEEe
Q psy15579 48 -------------------------------------------------D------------V--------SNAILTLKS 58 (368)
Q Consensus 48 -------------------------------------------------d------------~--------g~~~~~i~~ 58 (368)
+ . ||+++++.+
T Consensus 81 ~~l~~~i~~~~p~~Vl~g~t~~G~~laprlAa~L~~~~~sdv~~l~~~~~~~~~~~~~~~~~l~~~Rp~~gG~~~ati~~ 160 (217)
T 3ih5_A 81 SILVNLFKEEQPQICLMGATVIGRDLGPRVSSALTSGLTADCTSLEIGDHEDKKEGKVYKNLLYQIRPAFGGNIVATIVN 160 (217)
T ss_dssp HHHHHHHHHHCCSEEEEECSHHHHHHHHHHHHHTTCCCBCSCSEEEEEEEEETTTTEEEEEEEEEEEESSSSSCEEEECC
T ss_pred HHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHhCCCccceEEEEEecCCccccccccccccEEEEEECCCCEEEEEEEe
Confidence 2 2 899999999
Q ss_pred CC-CcEEEEEcCCCCCCCc--CCCCceEEEeeccc--cccCCceEEEeee
Q psy15579 59 KD-PVKVVTVRGTSFPPAA--KGGSASVEALANAS--VEANKLSEWVGQE 103 (368)
Q Consensus 59 ~~-~p~~~tvrpg~f~~~~--~~~~~~v~~~~~~~--~~~~~~~~~~~~~ 103 (368)
++ +|+|+|||||+|++.+ .+++++|+.++.+. .+.+.++++++..
T Consensus 161 ~~~~p~v~TVr~~~f~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~v~~~~ 210 (217)
T 3ih5_A 161 PEHRPQMATVREGVMKKEIVSPAYQGEVIRHDVKKYVADTDYVVKVIERH 210 (217)
T ss_dssp SSSSSEEEEECTTSSCCCCSCTTCCCEEEECCHHHHHTTSCCCCCCC---
T ss_pred cCCCCEEEEECCCCCCcCcCCCCCCccEEEecccccCCchhcceEEEEEE
Confidence 97 8999999999999877 35689999998764 4566778877765
No 13
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum}
Probab=98.67 E-value=6.1e-08 Score=86.23 Aligned_cols=86 Identities=10% Similarity=0.129 Sum_probs=68.8
Q ss_pred ccceEEEEEccCCccChHHHHHHHHHHHhCCcEEEEEeCCCc------c-------------------------------
Q psy15579 5 FESTIIIGEHADGKLSASTLSAITAAQKIGGDISVLVAGSKV------A------------------------------- 47 (368)
Q Consensus 5 ~~~i~v~~e~~~g~~~~~~~e~~~~a~~l~~~v~~~~~g~~~------~------------------------------- 47 (368)
-|+||||+||.+ +++||+++|| .+++++++++|++. +
T Consensus 3 ~M~vlV~~E~~~-----~~~Ell~~ar-~~g~v~av~~G~~~~~~~Gad~v~~v~~~~~~e~~a~~l~~~~~~p~~Vl~g 76 (166)
T 3fet_A 3 AMKFLTVSDDMN-----FLRQVNTLVA-GKGDMDSVIIGEGDAKGLGSKVLYRAKKGTPFDAVSEGILKIAGNYDYIAIG 76 (166)
T ss_dssp SEEEEEEESSHH-----HHHHHHHHHG-GGEEEEEEEESCCCCTTCCCSEEEEECTTCCHHHHHHHHHHHHTTCSEEEEE
T ss_pred ccEEEEEEcCcc-----HHHHHHHhhc-cCCcEEEEEECcchHHHcCCCEEEEeCCCCChHHHHHHHHHHHcCCCEEEEc
Confidence 377999999866 8999999999 44689999999631 0
Q ss_pred ----------------------cc------------------cceeeEEEeCCCcEEEEEcCCCCCCCcCCCCceEEEee
Q psy15579 48 ----------------------DV------------------SNAILTLKSKDPVKVVTVRGTSFPPAAKGGSASVEALA 87 (368)
Q Consensus 48 ----------------------d~------------------g~~~~~i~~~~~p~~~tvrpg~f~~~~~~~~~~v~~~~ 87 (368)
|| ||.++++.++ .| |+|||||+|++.+.+++++|+.++
T Consensus 77 ~t~~g~~vaprlAa~L~~~~~sdv~~l~~~~~~~~~~R~~~gG~~~~tv~~~-~p-v~Tvr~~~f~~~~~~~~~~v~~~~ 154 (166)
T 3fet_A 77 STEVGREIAGYLSFKTGFYTATEIFSLEFNGQKAHTKRFFYGGKTVIEEESD-AR-ILTVAPGVIEAKDLGTTPEIRDLE 154 (166)
T ss_dssp CSHHHHHHHHHHHHHHCCCEEEEEEEEEESSSSEEEEEEEGGGTEEEEEEEC-CC-EEEECTTSSCCCCCSCCCEEEECC
T ss_pred CCCccccHHHHHHHHhCCCceeeEEEEEecCCEEEEEEEccCCEEEEEEEeC-CC-EEEECCCCCCCCCCCCCcceEEEc
Confidence 11 8999999998 56 999999999966577889999887
Q ss_pred ccccccCCceEEEee
Q psy15579 88 NASVEANKLSEWVGQ 102 (368)
Q Consensus 88 ~~~~~~~~~~~~~~~ 102 (368)
.+ +.+++++++
T Consensus 155 ~~----~~~v~~~~~ 165 (166)
T 3fet_A 155 IG----QSRIKITKF 165 (166)
T ss_dssp CC----CCCCEEEEC
T ss_pred cC----CCeEEEEec
Confidence 63 567877753
No 14
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=94.74 E-value=0.14 Score=48.35 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=26.0
Q ss_pred CCccChHHHHHHHHHHHh----CC--cEEEEEeCCC
Q psy15579 16 DGKLSASTLSAITAAQKI----GG--DISVLVAGSK 45 (368)
Q Consensus 16 ~g~~~~~~~e~~~~a~~l----~~--~v~~~~~g~~ 45 (368)
.+.+++.++++|++|++| |+ +|+++++|+.
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~ 67 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPD 67 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCG
T ss_pred CCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCch
Confidence 457899999999999998 56 8999999974
No 15
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=90.51 E-value=1.4 Score=41.01 Aligned_cols=51 Identities=18% Similarity=0.068 Sum_probs=31.5
Q ss_pred eeEEEeCCCcEEEEEcCCCCCCCc-------CCCCceEEEeecccc--ccCCceEEEeeee
Q psy15579 53 ILTLKSKDPVKVVTVRGTSFPPAA-------KGGSASVEALANASV--EANKLSEWVGQEL 104 (368)
Q Consensus 53 ~~~i~~~~~p~~~tvrpg~f~~~~-------~~~~~~v~~~~~~~~--~~~~~~~~~~~~~ 104 (368)
+.++.++ .|+|+|+||+.|++.. .....+++.+..... +...++++++...
T Consensus 167 ~~~v~~~-~P~vvTv~~~~~~pR~~sl~~im~A~kk~i~~~~~~dl~~~~~~~~~v~~~~~ 226 (252)
T 1efp_B 167 LQTIAVS-LPAVVTADLRLNEPRYASLPNIMKAKKKPLDEKTAADYGVDVAPRLEVVSVRE 226 (252)
T ss_dssp EEEEEEE-SSEEEEECTTSCCCCCCCHHHHHHHTTSCEEEEEGGGGTCCCCCSEEEEEEEC
T ss_pred EEEEEEC-CCEEEEEeCCCCCcCCCCHHHHHhhccCCeeEecHHHcCCCCCCCcEEEEEec
Confidence 5566665 6799999999998754 224456777665321 1224566665543
No 16
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=89.51 E-value=1.4 Score=41.24 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=32.3
Q ss_pred eeEEEeCCCcEEEEEcCCCCCCCc-------CCCCceEEEeecccc--ccCCceEEEeeeec
Q psy15579 53 ILTLKSKDPVKVVTVRGTSFPPAA-------KGGSASVEALANASV--EANKLSEWVGQELS 105 (368)
Q Consensus 53 ~~~i~~~~~p~~~tvrpg~f~~~~-------~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~ 105 (368)
+.++.++ .|+|+|+||+.|++.. .....+++.+..... +...+++++....+
T Consensus 170 ~~~v~~~-~P~VvTv~~~~~~pR~~sl~~im~A~kk~i~~~~~~dl~~~~~~~~~v~~~~~p 230 (255)
T 1efv_B 170 LETLRLK-LPAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDP 230 (255)
T ss_dssp EEEEEEE-SSEEEEECGGGCCCCCCCHHHHHHTTTSCEEEECHHHHTCCCCCSEEEEEEECC
T ss_pred EEEEEEC-CCEEEEEeCCCCCcCCCCHHHHHHhccCCeeEecHHHcCCCCCCCeEEEEEecC
Confidence 5566665 6799999999998754 234556776654321 22345666665543
No 17
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=54.03 E-value=9.8 Score=40.05 Aligned_cols=115 Identities=16% Similarity=0.142 Sum_probs=67.9
Q ss_pred hhhccccCcc-cccchhhHHHHHHHhcCcccchHHhHhCCCccccc-----cccCCCce-----e-cCceeEeeccccce
Q psy15579 141 LGAAVGRGLK-SADNFKLLYTLADKLGAAVGASRAAVDAGFVPNDM-----QIGQTGKI-----I-APQVSKISGVTKVL 208 (368)
Q Consensus 141 ~~~~~g~~~~-~~~~~~~~~~LA~~Lg~~vg~sR~~~~~gw~~~~~-----qIGqtG~~-----v-~P~lyia~GISGai 208 (368)
+|++ |.|+. +.+..+.+.+||+++|.-|-+|- .-.|.+|.++ .+|..|.. + .+++.|++|-.=.-
T Consensus 293 vIl~-G~g~~~~~~~~~~l~~lae~~~~PV~tt~--~gkg~~~~~hpl~lG~~G~~g~~~~~~~l~~aDlvl~iG~r~~~ 369 (677)
T 1t9b_A 293 VLYV-GAGILNHADGPRLLKELSDRAQIPVTTTL--QGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDD 369 (677)
T ss_dssp EEEE-CGGGGGSTTHHHHHHHHHHHTTCCEEECG--GGTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCT
T ss_pred EEEE-CcccccCchhHHHHHHHHHHhCCCeeecc--ccCccCCCCCccccCcCCccCcHHHHHHHhcCCEEEEECCccCc
Confidence 3444 55553 33445666999999999998883 4566777655 34444432 2 47999999953110
Q ss_pred eechhhhccCCCC---------CcceeEeeccc-CCcccccccccccchhhhHHHHHHhhc
Q psy15579 209 TVENDALKGLLPE---------NLAPLIVSAQN-AGKYTHILAGASSMGKSLLPRVAALLD 259 (368)
Q Consensus 209 ~~~~~~~~g~~~~---------~~~V~I~~e~~-ag~~~~~~~elv~~ak~llp~LA~~l~ 259 (368)
.. .+.+....+. ..+|.|..++. -+...+.+..++++.+..+..|.+.+.
T Consensus 370 ~~-t~~~~~~~~~~~~~~~~~~~~iI~idid~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~ 429 (677)
T 1t9b_A 370 RV-TGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIF 429 (677)
T ss_dssp TT-SCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSC
T ss_pred cc-ccCccccCcccccccccCCceEEEEECCHHHhCCcccCCEEEeCCHHHHHHHHHHHhh
Confidence 00 0111111111 11555666553 345566788899999998888876553
No 18
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=43.72 E-value=33 Score=34.69 Aligned_cols=115 Identities=11% Similarity=0.066 Sum_probs=71.5
Q ss_pred hhccccCcccccchhhHHHHHHHhcCcccchHHhHhCCCcc--ccccccCCCc-ee-cCceeEeeccccceeechhhhcc
Q psy15579 142 GAAVGRGLKSADNFKLLYTLADKLGAAVGASRAAVDAGFVP--NDMQIGQTGK-II-APQVSKISGVTKVLTVENDALKG 217 (368)
Q Consensus 142 ~~~~g~~~~~~~~~~~~~~LA~~Lg~~vg~sR~~~~~gw~~--~~~qIGqtG~-~v-~P~lyia~GISGai~~~~~~~~g 217 (368)
++=+|.|+...+..+.+.+||+++|.-|-+|-.. .|.+| |...+|..+. .+ .+++-|.+|-.=.-....+. ..
T Consensus 215 vIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~--~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~-~~ 291 (564)
T 2q28_A 215 LIILGKGAAYSQADEQLREFIESAQIPFLPMSMA--KGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGK-KG 291 (564)
T ss_dssp EEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGG--TTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGT-TT
T ss_pred EEEECcccccccHHHHHHHHHHHhCCCEEeccCc--cccCCCCChhhcChHHHhHhhcCCEEEEECCcccccccccc-cc
Confidence 4444555554455566699999999998877642 44554 3446776554 23 48999999964321110011 22
Q ss_pred CCCCCcceeEeeccc-CCcccccccccccchhhhHHHHHHhhc
Q psy15579 218 LLPENLAPLIVSAQN-AGKYTHILAGASSMGKSLLPRVAALLD 259 (368)
Q Consensus 218 ~~~~~~~V~I~~e~~-ag~~~~~~~elv~~ak~llp~LA~~l~ 259 (368)
+.+...+|.|..++. -+...+.+..++++.+.++..|.+.+.
T Consensus 292 ~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (564)
T 2q28_A 292 WAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELK 334 (564)
T ss_dssp SCTTCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHHHHHHHHHhh
Confidence 333344556666653 345667788899999998888877653
No 19
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=41.07 E-value=96 Score=31.35 Aligned_cols=114 Identities=15% Similarity=0.023 Sum_probs=69.5
Q ss_pred hhhhccccCcccccchhhHHHHHHHhcCcccchHHhHhCCCcccc---ccccCCCce--------e-cCceeEeeccccc
Q psy15579 140 KLGAAVGRGLKSADNFKLLYTLADKLGAAVGASRAAVDAGFVPND---MQIGQTGKI--------I-APQVSKISGVTKV 207 (368)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~~~LA~~Lg~~vg~sR~~~~~gw~~~~---~qIGqtG~~--------v-~P~lyia~GISGa 207 (368)
+-++=+|.|+...+..+.+.+||+++|.-|-+|-. -.|.+|.+ ..+|..|.. + .+++-|.+|-.
T Consensus 209 rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~--~kg~~~~~~p~~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~-- 284 (566)
T 1ozh_A 209 NPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQ--AAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYS-- 284 (566)
T ss_dssp SEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGG--GTTTCCTTTCTTEEEECSSBTTCHHHHHHHHCSEEEEESCC--
T ss_pred CeEEEECCCcccccHHHHHHHHHHHHCCCEEEccc--cCCcCCCCChHhhcCCCcccCCHHHHHHHHhCCEEEEECCC--
Confidence 33445556665556666779999999999877643 34555543 345544422 2 35999999962
Q ss_pred eeechhhhccCCC-CCcceeEeeccc-CCcccccccccccchhhhHHHHHHhhc
Q psy15579 208 LTVENDALKGLLP-ENLAPLIVSAQN-AGKYTHILAGASSMGKSLLPRVAALLD 259 (368)
Q Consensus 208 i~~~~~~~~g~~~-~~~~V~I~~e~~-ag~~~~~~~elv~~ak~llp~LA~~l~ 259 (368)
.+ +..+..+.. ...+|.|..++. -+...+.+..++++.+.++..|.+.+.
T Consensus 285 ~~--~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (566)
T 1ozh_A 285 PV--EYEPAMWNSGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNID 336 (566)
T ss_dssp GG--GSCGGGTCCSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCC
T ss_pred CC--cCCccccCCCCCcEEEEeCCHHHhCCCCCCCEEEEeCHHHHHHHHHHhcc
Confidence 11 111223322 234555666543 345556788899999999888877554
No 20
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=40.55 E-value=37 Score=34.37 Aligned_cols=116 Identities=16% Similarity=0.065 Sum_probs=71.4
Q ss_pred hhccccCcccccchhhHHHHHHHhcCcccchHHhHhCCCcc--ccccccCCCc-ee-cCceeEeeccccceeechhhhcc
Q psy15579 142 GAAVGRGLKSADNFKLLYTLADKLGAAVGASRAAVDAGFVP--NDMQIGQTGK-II-APQVSKISGVTKVLTVENDALKG 217 (368)
Q Consensus 142 ~~~~g~~~~~~~~~~~~~~LA~~Lg~~vg~sR~~~~~gw~~--~~~qIGqtG~-~v-~P~lyia~GISGai~~~~~~~~g 217 (368)
++=+|.|+......+.+.+||+++|.-|-+|-. -.|.+| |...+|..+. .+ .+++-|.+|-.=.-....+....
T Consensus 217 vIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~--~~g~~~~~~p~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~ 294 (568)
T 2c31_A 217 VIMLGKGAAYAQCDDEIRALVEETGIPFLPMGM--AKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKT 294 (568)
T ss_dssp EEEECHHHHHHTCHHHHHHHHHHHTCCEEECGG--GTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGCSGG
T ss_pred EEEECcccccccHHHHHHHHHHHhCCCEEeccc--ccccCCCCChhhcchHHHhhhccCCEEEEECCCCccccccCcccc
Confidence 444455554444455669999999999887763 334554 3446776553 23 48999999965221110111122
Q ss_pred CC-CCCcceeEeeccc-CCcccccccccccchhhhHHHHHHhhc
Q psy15579 218 LL-PENLAPLIVSAQN-AGKYTHILAGASSMGKSLLPRVAALLD 259 (368)
Q Consensus 218 ~~-~~~~~V~I~~e~~-ag~~~~~~~elv~~ak~llp~LA~~l~ 259 (368)
+. +...+|.|..++. -+...+.+..++++.+.++..|.+.+.
T Consensus 295 ~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 338 (568)
T 2c31_A 295 WGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALK 338 (568)
T ss_dssp GTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHT
T ss_pred cCCCCCeEEEEeCCHHHhcCCcCCCceeeCCHHHHHHHHHHhhh
Confidence 33 3334556666653 345667788899999999888887664
No 21
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=39.49 E-value=23 Score=33.22 Aligned_cols=64 Identities=8% Similarity=-0.003 Sum_probs=45.1
Q ss_pred cCceeEeeccccceeechhhhccCCC-CCcceeEeecccCC---cccccccccccchhhhHHHHHHhhc
Q psy15579 195 APQVSKISGVTKVLTVENDALKGLLP-ENLAPLIVSAQNAG---KYTHILAGASSMGKSLLPRVAALLD 259 (368)
Q Consensus 195 ~P~lyia~GISGai~~~~~~~~g~~~-~~~~V~I~~e~~ag---~~~~~~~elv~~ak~llp~LA~~l~ 259 (368)
+.++.|.+|.|..+ +|...+..... ....+.||.++... .....++.+.+++-+++|.|.+.++
T Consensus 211 ~~DlllviGTSl~V-~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~ 278 (289)
T 1q1a_A 211 QQPLVIVVGTSLAV-YPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG 278 (289)
T ss_dssp CCCEEEEESCCCCE-ETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHT
T ss_pred cCCEEEEEccCCCh-hhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcC
Confidence 57899999999998 45555544443 22355677765431 2345788889999999999988776
No 22
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=38.63 E-value=37 Score=34.58 Aligned_cols=116 Identities=14% Similarity=0.004 Sum_probs=64.3
Q ss_pred hhhhccccCcccccchhhHHHHHHHhcCcccchHHhHhCCCcc--ccccccCCCcee---------cCceeEeeccccce
Q psy15579 140 KLGAAVGRGLKSADNFKLLYTLADKLGAAVGASRAAVDAGFVP--NDMQIGQTGKII---------APQVSKISGVTKVL 208 (368)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~~~LA~~Lg~~vg~sR~~~~~gw~~--~~~qIGqtG~~v---------~P~lyia~GISGai 208 (368)
.+|+++ .|+.. +..+.+.+||+++|.-|-+|-- ...|..| +...+|..|... .+++-|.+|-.=.-
T Consensus 226 PvIl~G-~g~~~-~~~~~l~~lae~~~~PV~~t~~-~~~~~~~~~hp~~~g~~~~~~~~~~~~~~~~aDlvl~~G~~~~~ 302 (578)
T 3lq1_A 226 GVFVVG-PIDKK-ELEQPMVDLAKKLGWPILADPL-SGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVS 302 (578)
T ss_dssp EEEEEC-SCCCT-TCHHHHHHHHHHHTCCEEECGG-GSTTSBSSCCSSEECCHHHHTTSHHHHHHTCCSEEEEESSCCSC
T ss_pred eEEEEC-CCCCh-HHHHHHHHHHHhcCcEEEEecC-CCCCCCCCCCccccccHHHHhcCccccccCCCCEEEEeCCcccc
Confidence 344444 44443 2345568999999998877521 1122223 334566544322 58999999963110
Q ss_pred eechhhhccCCCCCcceeEeeccc-CCcccccccccccchhhhHHHHHHhhc
Q psy15579 209 TVENDALKGLLPENLAPLIVSAQN-AGKYTHILAGASSMGKSLLPRVAALLD 259 (368)
Q Consensus 209 ~~~~~~~~g~~~~~~~V~I~~e~~-ag~~~~~~~elv~~ak~llp~LA~~l~ 259 (368)
.+-.....-.+...+|.|..++. -+...+.+..++++.+.++..|.+.+.
T Consensus 303 -~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 353 (578)
T 3lq1_A 303 -KPLKNWLEQLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMP 353 (578)
T ss_dssp -HHHHHHHHHCCSSEEEEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSC
T ss_pred -hhHHHHHhcCCCCEEEEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhcc
Confidence 00001111112233555655543 245567788999999999888887654
No 23
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=37.48 E-value=52 Score=33.55 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=70.9
Q ss_pred hhhhccccCcccccchhhHHHHHHHhcCcccchHHhHhCCCcccc--ccccCCCce--------e-cCceeEeeccccce
Q psy15579 140 KLGAAVGRGLKSADNFKLLYTLADKLGAAVGASRAAVDAGFVPND--MQIGQTGKI--------I-APQVSKISGVTKVL 208 (368)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~~~LA~~Lg~~vg~sR~~~~~gw~~~~--~qIGqtG~~--------v-~P~lyia~GISGai 208 (368)
+-++=+|.|+...+..+.+.+||+++|.-|-+|- .-.|.+|.+ ..+|..|.. + .+++-|.+|-.=.-
T Consensus 207 rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~--~~~g~~~~~~p~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~ 284 (589)
T 2pgn_A 207 NPVILAGGGVARSGGSEALLKLAEMVGVPVVTTS--TGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSRLSD 284 (589)
T ss_dssp SEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECT--TTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCT
T ss_pred CeEEEECCCcccccHHHHHHHHHHHhCCCEEEcc--ccCccCCCCChhhcCCccccCCHHHHHHHhhCCEEEEECCCccc
Confidence 3344455566544556667999999999987773 234455533 366665531 2 37999999853211
Q ss_pred eechhhhccCCCCCcceeEeeccc-CCcccccccccccchhhhHHHHHHhhc
Q psy15579 209 TVENDALKGLLPENLAPLIVSAQN-AGKYTHILAGASSMGKSLLPRVAALLD 259 (368)
Q Consensus 209 ~~~~~~~~g~~~~~~~V~I~~e~~-ag~~~~~~~elv~~ak~llp~LA~~l~ 259 (368)
.. .+ .....+...+|.|..++. -+...+.+..++++.+.++..|.+.+.
T Consensus 285 ~~-~~-~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (589)
T 2pgn_A 285 WG-IA-QGYITKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLP 334 (589)
T ss_dssp TT-TT-TTTTCCCCSEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHHHHGG
T ss_pred cc-cc-ccccCCCCeEEEEeCCHHHHCCCcCCCEEEEeCHHHHHHHHHHHhh
Confidence 11 11 122223334666666653 345567788899999999888887654
No 24
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=37.27 E-value=78 Score=31.87 Aligned_cols=104 Identities=19% Similarity=0.157 Sum_probs=63.1
Q ss_pred cccCcccccchhhHHHHHHHhcCcccchHH---hHhCCCccccccccCCCce--------e-cCceeEeeccccceeech
Q psy15579 145 VGRGLKSADNFKLLYTLADKLGAAVGASRA---AVDAGFVPNDMQIGQTGKI--------I-APQVSKISGVTKVLTVEN 212 (368)
Q Consensus 145 ~g~~~~~~~~~~~~~~LA~~Lg~~vg~sR~---~~~~gw~~~~~qIGqtG~~--------v-~P~lyia~GISGai~~~~ 212 (368)
+|.|.. +..+.+.+||+++|.-|-.|-. +++. .|...+|..|.. + .+++-|.+|-.=. .
T Consensus 208 ~G~g~~--~a~~~l~~lae~~~~Pv~~t~~gkg~~~~---~hp~~~G~~G~~~~~~~~~~~~~aDlvl~iG~~~~--~-- 278 (549)
T 3eya_A 208 CGSGCA--GAHKELVEFAGKIKAPIVHALRGKEHVEY---DNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFP--Y-- 278 (549)
T ss_dssp ECGGGT--TCHHHHHHHHHHHTCCEEECGGGHHHHSS---SCTTBCCCCSTTSCHHHHHHHHHCSEEEEESCCCC--C--
T ss_pred ECCCch--HHHHHHHHHHHHhCCCEEECCccCcCCCC---CCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCC--c--
Confidence 445542 3345568999999988877643 2332 234456655431 2 4799999997521 1
Q ss_pred hhhccCCCCCcceeEeecccC-CcccccccccccchhhhHHHHHHhhc
Q psy15579 213 DALKGLLPENLAPLIVSAQNA-GKYTHILAGASSMGKSLLPRVAALLD 259 (368)
Q Consensus 213 ~~~~g~~~~~~~V~I~~e~~a-g~~~~~~~elv~~ak~llp~LA~~l~ 259 (368)
. .-+.+...+|.|..++.. +...+.+..++++.+.++..|.+.+.
T Consensus 279 ~--~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 324 (549)
T 3eya_A 279 R--AFYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVE 324 (549)
T ss_dssp G--GGSCSSSEEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHGGGSC
T ss_pred c--ccCCCCCeEEEEeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence 1 122333446666666543 34556788888999998888776554
No 25
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=36.37 E-value=1.5e+02 Score=30.15 Aligned_cols=108 Identities=16% Similarity=0.135 Sum_probs=67.1
Q ss_pred cccCcccccchhhHHHHHHHhcCcccchHHhHhCCCccc--cccccCCCce---------ecCceeEeeccccceeechh
Q psy15579 145 VGRGLKSADNFKLLYTLADKLGAAVGASRAAVDAGFVPN--DMQIGQTGKI---------IAPQVSKISGVTKVLTVEND 213 (368)
Q Consensus 145 ~g~~~~~~~~~~~~~~LA~~Lg~~vg~sR~~~~~gw~~~--~~qIGqtG~~---------v~P~lyia~GISGai~~~~~ 213 (368)
+|.|+ .+..+.+.+||++++.-|-.|-. -.|.+|. ...+|..|.. -.+++-|++|-.=. . ..
T Consensus 219 ~G~g~--~~a~~~l~~lae~~~~PV~~t~~--gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~--~-~~ 291 (603)
T 4feg_A 219 YGIGA--RKAGKELEQLSKTLKIPLMSTYP--AKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYP--F-AE 291 (603)
T ss_dssp ECGGG--TTCHHHHHHHHHHHTCCEEECGG--GTTSSCTTCTTBCCCCSSSSCHHHHHHHHHCSEEEEESCCCT--T-TT
T ss_pred ECCCc--hhHHHHHHHHHHHHCCCEEEcCc--cccCCCCCChhhcccCcccCcHHHHHHHHhCCEEEEECCCCC--c-cc
Confidence 34444 23455669999999999888853 3455553 3457766642 23789999996421 1 11
Q ss_pred hhccCCCCCcceeEeeccc-CCcccccccccccchhhhHHHHHHhhc
Q psy15579 214 ALKGLLPENLAPLIVSAQN-AGKYTHILAGASSMGKSLLPRVAALLD 259 (368)
Q Consensus 214 ~~~g~~~~~~~V~I~~e~~-ag~~~~~~~elv~~ak~llp~LA~~l~ 259 (368)
-+....+...+|.|..++. -+...+.+..++++.+.++..|.+.+.
T Consensus 292 ~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 338 (603)
T 4feg_A 292 VSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVS 338 (603)
T ss_dssp TTTTTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCC
T ss_pred ccccCCCCCeEEEEeCCHHHhCCccCCCEEEEeCHHHHHHHHHHhhh
Confidence 1112233344666666653 244556788899999999888887654
No 26
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=34.07 E-value=31 Score=31.49 Aligned_cols=49 Identities=18% Similarity=0.078 Sum_probs=33.7
Q ss_pred cccccccEEEEEeCccccCCCCccHHHHHHHHHHhCCCcEEEeCCCcCC
Q psy15579 278 SKISGVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSMG 326 (368)
Q Consensus 278 ~~~~GadkV~~v~~~~l~~y~~e~ya~aLa~l~~~~~p~~VL~~aT~~G 326 (368)
++..|++.++..+-+...-...+...+.|.+++++.+|++|+.+.-..+
T Consensus 61 ~~~LGv~~~~~L~~~D~~~~~~~~~~~~l~~~ir~~~PdvV~t~~~~d~ 109 (242)
T 2ixd_A 61 ARIMGVKTRLNLAMPDRGLYMKEEYIREIVKVIRTYKPKLVFAPYYEDR 109 (242)
T ss_dssp HHHHTCCEEEEEEECTTCCCCCHHHHHHHHHHHHHHCCSEEEEECSCSS
T ss_pred HHHcCCCeEEECCCCCCCCCChHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 3444888765555443333345678899999999999999998754443
No 27
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=33.32 E-value=52 Score=31.07 Aligned_cols=64 Identities=11% Similarity=-0.048 Sum_probs=46.6
Q ss_pred cCceeEeeccccceeechhhhccCCCCC-cceeEeecccCC---cccccccccccchhhhHHHHHHhhc
Q psy15579 195 APQVSKISGVTKVLTVENDALKGLLPEN-LAPLIVSAQNAG---KYTHILAGASSMGKSLLPRVAALLD 259 (368)
Q Consensus 195 ~P~lyia~GISGai~~~~~~~~g~~~~~-~~V~I~~e~~ag---~~~~~~~elv~~ak~llp~LA~~l~ 259 (368)
+.+|.|.+|-|+.+. |.+.+......+ ..+.||.++-.. .....++.+.++.-+.++.|++.||
T Consensus 197 ~aDlllviGTSl~V~-Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lg 264 (285)
T 3glr_A 197 MADLLLILGTSLEVE-PFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLG 264 (285)
T ss_dssp HCSEEEEESCCCCEE-TTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHT
T ss_pred cCCEEEEeCCCCccc-cHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhC
Confidence 478999999999986 455555444333 356788876432 2357888889999999999999887
No 28
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=32.72 E-value=98 Score=31.44 Aligned_cols=110 Identities=18% Similarity=0.141 Sum_probs=65.5
Q ss_pred cccCcccccchhhHHHHHHHhcCcccchHHhHhCCCcccc--ccccCCCce---------ecCceeEeeccccceeechh
Q psy15579 145 VGRGLKSADNFKLLYTLADKLGAAVGASRAAVDAGFVPND--MQIGQTGKI---------IAPQVSKISGVTKVLTVEND 213 (368)
Q Consensus 145 ~g~~~~~~~~~~~~~~LA~~Lg~~vg~sR~~~~~gw~~~~--~qIGqtG~~---------v~P~lyia~GISGai~~~~~ 213 (368)
+|.|+.... +.+.+||+++|.-|-+|-. -.|.+|.+ ..+|..|.. -.+++-|.+|-.=.-.. .+
T Consensus 221 ~G~g~~~~~--~~l~~lae~~~~Pv~~t~~--g~g~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~-~~ 295 (590)
T 1ybh_A 221 VGGGCLNSS--DELGRFVELTGIPVASTLM--GLGSYPADDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRV-TG 295 (590)
T ss_dssp ECGGGTTCH--HHHHHHHHHHCCCEEECTT--TTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCHHH-HS
T ss_pred ECcccccCH--HHHHHHHHHhCCCEEEchh--hcCcCCCCCchhcCCcccccCHHHHHHHHhCCEEEEEcCCCCccc-cC
Confidence 344444333 5569999999999888732 34556543 455655432 23789999985311000 12
Q ss_pred hhccCCCCCcceeEeeccc-CCcccccccccccchhhhHHHHHHhhc
Q psy15579 214 ALKGLLPENLAPLIVSAQN-AGKYTHILAGASSMGKSLLPRVAALLD 259 (368)
Q Consensus 214 ~~~g~~~~~~~V~I~~e~~-ag~~~~~~~elv~~ak~llp~LA~~l~ 259 (368)
......+...+|.|..++. -+...+.+..++++.+.++..|.+.+.
T Consensus 296 ~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 342 (590)
T 1ybh_A 296 KLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLE 342 (590)
T ss_dssp SGGGTTTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence 2223333344666666653 345557788888999998888876553
No 29
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=32.41 E-value=73 Score=32.26 Aligned_cols=115 Identities=13% Similarity=0.100 Sum_probs=70.0
Q ss_pred hhhhccccCcccccchhhHHHHHHHhcCcccchHHhHhCCCccc--cccccCC-----C---c-----ee-cCceeEeec
Q psy15579 140 KLGAAVGRGLKSADNFKLLYTLADKLGAAVGASRAAVDAGFVPN--DMQIGQT-----G---K-----II-APQVSKISG 203 (368)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~~~LA~~Lg~~vg~sR~~~~~gw~~~--~~qIGqt-----G---~-----~v-~P~lyia~G 203 (368)
+-++=+|.|+...+..+.+.+||+++|.-|-+|-. -.|.+|. ...+|.. | . .+ .+++-|.+|
T Consensus 218 rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~--~~g~~~~~hp~~~G~~~~~~~g~~~~~~~~~~l~~aDlvl~iG 295 (573)
T 2iht_A 218 HPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYI--AKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVG 295 (573)
T ss_dssp SEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECST--TTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEEEET
T ss_pred CeEEEECCCccccCHHHHHHHHHHHHCCeEEEecc--cCccCCCCCcCccCccccccCCCCCCHHHHHHHhhCCEEEEEC
Confidence 33444555665555566679999999999877632 3455544 3345543 3 2 23 479999999
Q ss_pred cc--cceeechhhhccCCCCCcceeEeecccC-CcccccccccccchhhhHHHHHHhhc
Q psy15579 204 VT--KVLTVENDALKGLLPENLAPLIVSAQNA-GKYTHILAGASSMGKSLLPRVAALLD 259 (368)
Q Consensus 204 IS--Gai~~~~~~~~g~~~~~~~V~I~~e~~a-g~~~~~~~elv~~ak~llp~LA~~l~ 259 (368)
-. ..... +... -.+...+|.|..++.. +...+.+..++++.+.++..|.+.+.
T Consensus 296 ~~~~~~~~~--~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 351 (573)
T 2iht_A 296 YDYAEDLRP--SMWQ-KGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATA 351 (573)
T ss_dssp CCGGGCCCH--HHHC-CSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTT
T ss_pred CCccccccc--cccC-CCCCCeEEEEeCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhcc
Confidence 65 22221 1121 1123345566666533 44556788889999999888887664
No 30
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=31.13 E-value=60 Score=31.43 Aligned_cols=64 Identities=9% Similarity=-0.002 Sum_probs=47.0
Q ss_pred cCceeEeeccccceeechhhhccCCC-CCcceeEeecccCCcccccccccccchhhhHHHHHHhhcCC
Q psy15579 195 APQVSKISGVTKVLTVENDALKGLLP-ENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVS 261 (368)
Q Consensus 195 ~P~lyia~GISGai~~~~~~~~g~~~-~~~~V~I~~e~~ag~~~~~~~elv~~ak~llp~LA~~l~~~ 261 (368)
+.++.|.+|.|..+. |...+..... ....|.||.++.. ....++.+.++.-++++.|++.++-.
T Consensus 255 ~aDllLviGTSL~V~-Paa~lv~~~~~~~~~v~IN~~~t~--~~~~dl~i~g~~~~vl~~L~~~lgw~ 319 (354)
T 2hjh_A 255 ECDLLICIGTSLKVA-PVSEIVNMVPSHVPQVLINRDPVK--HAEFDLSLLGYCDDIAAMVAQKCGWT 319 (354)
T ss_dssp TCCEEEEESCCCCEE-TGGGHHHHSCTTSCEEEEESSCCT--TSCCSEEEESCHHHHHHHHHHHHTCC
T ss_pred hCCEEEEECcCCCch-hHHHHHHHHhcCCcEEEEcCCCCC--CCCcCEEEeCCHHHHHHHHHHHcCCC
Confidence 368999999999984 5555544433 2246677877654 34678889999999999999998854
No 31
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=26.54 E-value=53 Score=29.67 Aligned_cols=73 Identities=10% Similarity=0.085 Sum_probs=41.8
Q ss_pred cCCceEEEecCCCCchhhhcccccccEEEEEeCccccCCCCccHHHHHHHHHHhCCCcEEEeCCCcCCcchHHHHHhh
Q psy15579 259 DVSPISDIIDIKSPDTFQVSKISGVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAAL 336 (368)
Q Consensus 259 ~~~v~av~ig~~~~~~~el~~~~GadkV~~v~~~~l~~y~~e~ya~aLa~l~~~~~p~~VL~~aT~~GrdlApRLAar 336 (368)
+..+.+|+-+..+....+.+...|.. +++++...+. +.+.|-+.+.+.+++.+||++++.+ .++-|-+.+=.+
T Consensus 29 ~~eI~~Visn~~~a~v~~~A~~~gIp-~~~~~~~~~~--~r~~~d~~~~~~l~~~~~Dliv~ag--y~~Il~~~~l~~ 101 (211)
T 3p9x_A 29 PCEVALLITDKPGAKVVERVKVHEIP-VCALDPKTYP--SKEAYEIEVVQQLKEKQIDFVVLAG--YMRLVGPTLLGA 101 (211)
T ss_dssp SSEEEEEEESCSSSHHHHHHHTTTCC-EEECCGGGSS--SHHHHHHHHHHHHHHTTCCEEEESS--CCSCCCHHHHHH
T ss_pred CcEEEEEEECCCCcHHHHHHHHcCCC-EEEeChhhcC--chhhhHHHHHHHHHhcCCCEEEEeC--chhhcCHHHHhh
Confidence 34445554443323334555544766 5555443222 2456677888889999999999876 345554444333
No 32
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=26.54 E-value=96 Score=31.24 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=68.6
Q ss_pred hhhhccccCcccccchhhHHHHHHHhcCcccchHHhHhCCCcc---ccccccCCC--c-----eecCceeEeecccccee
Q psy15579 140 KLGAAVGRGLKSADNFKLLYTLADKLGAAVGASRAAVDAGFVP---NDMQIGQTG--K-----IIAPQVSKISGVTKVLT 209 (368)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~~~LA~~Lg~~vg~sR~~~~~gw~~---~~~qIGqtG--~-----~v~P~lyia~GISGai~ 209 (368)
+-++=+|.|+...+..+.+.+||+++|.-|-+|-.. .|.+| +...+|..| . .-.+++-|.+|-.=...
T Consensus 206 rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~--~g~~~~~~~p~~~G~~g~~~~~~~~~~~aDlvl~iG~~~~~~ 283 (563)
T 2uz1_A 206 RPVIVLGSEASRTARKTALSAFVAATGVPVFADYEG--LSMLSGLPDAMRGGLVQNLYSFAKADAAPDLVLMLGARFGLN 283 (563)
T ss_dssp SEEEEECHHHHHHTCHHHHHHHHHHHCCCEEECGGG--GGGGTTSCGGGEEEEGGGGGGTTTTTCCCSEEEEESCCSSGG
T ss_pred CcEEEECCccccccHHHHHHHHHHHhCCcEEEcCcc--cCcCCCCCChhhcCCCCCCCHHHHhhcCCCEEEEECCCCccc
Confidence 334445556654555666699999999988776432 34454 334565544 1 12368999998541111
Q ss_pred echhhhccCCC-CCcceeEeeccc-CCcccccccccccchhhhHHHHHHhhc
Q psy15579 210 VENDALKGLLP-ENLAPLIVSAQN-AGKYTHILAGASSMGKSLLPRVAALLD 259 (368)
Q Consensus 210 ~~~~~~~g~~~-~~~~V~I~~e~~-ag~~~~~~~elv~~ak~llp~LA~~l~ 259 (368)
. .+......+ ...+|.|..++. -+...+.+..++++.+.++..|.+.+.
T Consensus 284 ~-~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (563)
T 2uz1_A 284 T-GHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQATA 334 (563)
T ss_dssp G-TTTSCSSSCTTSEEEEECSCGGGTTSSSCCSEEECSCHHHHHHHHHHHHT
T ss_pred c-cccccccCCCCCeEEEEECCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhh
Confidence 1 111222333 234556666553 244556788888999998888877654
No 33
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=26.25 E-value=40 Score=32.96 Aligned_cols=64 Identities=8% Similarity=-0.003 Sum_probs=45.0
Q ss_pred cCceeEeeccccceeechhhhccCCC-CCcceeEeecccCC---cccccccccccchhhhHHHHHHhhc
Q psy15579 195 APQVSKISGVTKVLTVENDALKGLLP-ENLAPLIVSAQNAG---KYTHILAGASSMGKSLLPRVAALLD 259 (368)
Q Consensus 195 ~P~lyia~GISGai~~~~~~~~g~~~-~~~~V~I~~e~~ag---~~~~~~~elv~~ak~llp~LA~~l~ 259 (368)
+.+++|.+|.|..+ +|...+..... -...|.||.++... .....++.+.+++-+++|.|.+.++
T Consensus 219 ~aDllLviGTSl~V-~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg 286 (361)
T 1q14_A 219 QQPLVIVVGTSLAV-YPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG 286 (361)
T ss_dssp CCCEEEEESCCCCS-TTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHT
T ss_pred cCCEEEEECCCCCc-hhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcC
Confidence 57999999999998 45555554443 22345667665421 2345788889999999999998877
No 34
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=26.02 E-value=42 Score=30.09 Aligned_cols=47 Identities=9% Similarity=-0.159 Sum_probs=31.8
Q ss_pred ccccccEEEEEeCccccCCCCccHHHHHHHHHHhCCCcEEEeCCCcC
Q psy15579 279 KISGVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSM 325 (368)
Q Consensus 279 ~~~GadkV~~v~~~~l~~y~~e~ya~aLa~l~~~~~p~~VL~~aT~~ 325 (368)
+..|++.++..+-+.-.-...+...+.|.+++++.+|++|+.+.-..
T Consensus 60 ~~lG~~~~~~l~~~D~~l~~~~~~~~~l~~~ir~~~P~~V~t~~~~d 106 (227)
T 1uan_A 60 RILGLDFRGNLGFPDGGLADVPEQRLKLAQALRRLRPRVVFAPLEAD 106 (227)
T ss_dssp HHHTCSEEEEEEECTTCCCCCHHHHHHHHHHHHHHCEEEEEEECSCC
T ss_pred HhcCCCeEEECCCCCCCCCChHHHHHHHHHHHHHhCCCEEEeCCCCC
Confidence 33488876555433222223567889999999999999999875433
No 35
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=25.77 E-value=80 Score=32.30 Aligned_cols=113 Identities=18% Similarity=0.137 Sum_probs=67.8
Q ss_pred hccccCcccccchhhHHHHHHHhcCcccchHHhHhCCCccc--cccccCCCcee----------cCceeEeeccccceee
Q psy15579 143 AAVGRGLKSADNFKLLYTLADKLGAAVGASRAAVDAGFVPN--DMQIGQTGKII----------APQVSKISGVTKVLTV 210 (368)
Q Consensus 143 ~~~g~~~~~~~~~~~~~~LA~~Lg~~vg~sR~~~~~gw~~~--~~qIGqtG~~v----------~P~lyia~GISGai~~ 210 (368)
+=+|.|+......+.+.+||+++|.-|-+|... .|.+|. ...+|..|..- .+++-|.+|-.=.-..
T Consensus 231 il~G~g~~~~~a~~~l~~lae~~~~PV~~t~~~--~g~~~~~hp~~~G~~g~~~~~~~~~~~l~~aDlvl~iG~~~~~~~ 308 (616)
T 2pan_A 231 IVAGGGVINADAAALLQQFAELTSVPVIPTLMG--WGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRH 308 (616)
T ss_dssp EEECHHHHHTTCHHHHHHHHHHHTCCEEECTTT--TTSSCTTSTTBCCCCSSSSCCHHHHHHHHHCSEEEEESCCCCHHH
T ss_pred EEECCCcCcccHHHHHHHHHHHhCCCEEEcccc--CccCCCCCccccCCccccCCHHHHHHHHHhCCEEEEECCCCcccc
Confidence 334666655555666699999999998877432 445543 34466655322 3699999995411000
Q ss_pred chhhhccCCCCCcceeEeeccc-CCcccccccccccchhhhHHHHHHhh
Q psy15579 211 ENDALKGLLPENLAPLIVSAQN-AGKYTHILAGASSMGKSLLPRVAALL 258 (368)
Q Consensus 211 ~~~~~~g~~~~~~~V~I~~e~~-ag~~~~~~~elv~~ak~llp~LA~~l 258 (368)
.+......+...+|.|..++. -+...+.+..++++.+.++..|.+.+
T Consensus 309 -~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 356 (616)
T 2pan_A 309 -TGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVA 356 (616)
T ss_dssp -HSSHHHHHTTCEEEEEESCGGGTTSSSCCSSCEECCHHHHHHHHHHHH
T ss_pred -cCcccccCCCCeEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHHh
Confidence 111222223334566666653 34455677888899988888887654
No 36
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=24.63 E-value=42 Score=30.42 Aligned_cols=59 Identities=5% Similarity=-0.035 Sum_probs=40.3
Q ss_pred ceeEeeccccceeechhhhccCC---CCCcceeEeecccCCcccccccccccchhhhHHHHHHhh
Q psy15579 197 QVSKISGVTKVLTVENDALKGLL---PENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAALL 258 (368)
Q Consensus 197 ~lyia~GISGai~~~~~~~~g~~---~~~~~V~I~~e~~ag~~~~~~~elv~~ak~llp~LA~~l 258 (368)
+++|.+|.|+.+ +|..++.... +.. .+.||.++.. .....++.+.+++-+++|.|.+.+
T Consensus 169 dl~lviGTSl~V-~Pa~~l~~~a~~~g~~-~i~iN~~~t~-~~~~~~~~i~~~~~~~l~~l~~~l 230 (235)
T 1s5p_A 169 DIFIAIGTSGHV-YPAAGFVHEAKLHGAH-TVELNLEPSQ-VGNEFAEKYYGPASQVVPEFVEKL 230 (235)
T ss_dssp SEEEEESCCTTE-ETGGGHHHHHHHTTCE-EEEEESSSCC----CCSEEEESCHHHHHHHHHHHH
T ss_pred CEEEEECcCCch-hhHHHHHHHHHHcCCe-EEEEECCCCC-CCccccEEEeCCHHHHHHHHHHHH
Confidence 699999999987 4544444332 344 6688887643 344677888889999999987654
No 37
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=24.16 E-value=82 Score=30.11 Aligned_cols=64 Identities=13% Similarity=-0.039 Sum_probs=44.1
Q ss_pred cCceeEeeccccceeechhhhccCCCC-CcceeEeecccCCcc-------------------cccccccccchhhhHHHH
Q psy15579 195 APQVSKISGVTKVLTVENDALKGLLPE-NLAPLIVSAQNAGKY-------------------THILAGASSMGKSLLPRV 254 (368)
Q Consensus 195 ~P~lyia~GISGai~~~~~~~~g~~~~-~~~V~I~~e~~ag~~-------------------~~~~~elv~~ak~llp~L 254 (368)
+.+++|.+|.|..+. |-..+...... ...+.||.++..... +..++.+.++.-++++.|
T Consensus 220 ~aDlllviGTSl~V~-P~a~l~~~~~~~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~~~l~~L 298 (323)
T 1j8f_A 220 KVDLLLVMGTSLQVQ-PFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQGCLAL 298 (323)
T ss_dssp SCSEEEEESSCSCSH-HHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHHHHHHH
T ss_pred CCCEEEEEeeCcccH-HHHHHHHHHHcCCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHHHHHHHH
Confidence 579999999999984 55556554443 334567776643211 346777888888888888
Q ss_pred HHhhc
Q psy15579 255 AALLD 259 (368)
Q Consensus 255 A~~l~ 259 (368)
.+.++
T Consensus 299 ~~~lg 303 (323)
T 1j8f_A 299 AELLG 303 (323)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 88776
No 38
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=21.97 E-value=1.3e+02 Score=28.80 Aligned_cols=77 Identities=8% Similarity=-0.009 Sum_probs=48.5
Q ss_pred HHhhcCCceEEEecCCCCchhhhcccccccEEEEEeCccccCCCCccHHHHHHHHHHhCCCcEEEeCCCcCCcchHHHHH
Q psy15579 255 AALLDVSPISDIIDIKSPDTFQVSKISGVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVA 334 (368)
Q Consensus 255 A~~l~~~v~av~ig~~~~~~~el~~~~GadkV~~v~~~~l~~y~~e~ya~aLa~l~~~~~p~~VL~~aT~~GrdlApRLA 334 (368)
|+++|..++++--... ..+ ....-+|+.+.++. ..+.+.+.+.+.++.++++++.|+. .+-..-.++.+++
T Consensus 24 a~~lG~~vv~v~~~~~-~~~---~~~~~~d~~~~~~~----~~d~~~~~~~~~~~~~~~~id~V~~-~~e~~~~~~a~l~ 94 (425)
T 3vot_A 24 AERLGLKVTFFYNSAE-DFP---GNLPAVERCVPLPL----FEDEEAAMDVVRQTFVEFPFDGVMT-LFEPALPFTAKAA 94 (425)
T ss_dssp HHHTTCEEEEEEETTS-CCC---CSCTTEEEEEEECT----TTCHHHHHHHHHHHHHHSCCSEEEC-CCGGGHHHHHHHH
T ss_pred HHHCCCEEEEEECCCc-ccc---cCHhhccEEEecCC----CCCHHHHHHHHHHhhhhcCCCEEEE-CCchhHHHHHHHH
Confidence 6777877666532211 111 11224677777653 2246778899999999999998863 4445556677787
Q ss_pred hhcCCC
Q psy15579 335 ALLDVS 340 (368)
Q Consensus 335 arL~ag 340 (368)
.+|+..
T Consensus 95 e~lglp 100 (425)
T 3vot_A 95 EALNLP 100 (425)
T ss_dssp HHTTCS
T ss_pred HHcCCC
Confidence 777654
No 39
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=21.69 E-value=1.1e+02 Score=27.41 Aligned_cols=75 Identities=5% Similarity=0.039 Sum_probs=41.4
Q ss_pred hcCCceEEEecCCCCchhhhcccccccEEEEEeCccccCCCCccHHHHHHHHHHhCCCcEEEeCCCcCCcchHHHHHhhc
Q psy15579 258 LDVSPISDIIDIKSPDTFQVSKISGVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAALL 337 (368)
Q Consensus 258 l~~~v~av~ig~~~~~~~el~~~~GadkV~~v~~~~l~~y~~e~ya~aLa~l~~~~~p~~VL~~aT~~GrdlApRLAarL 337 (368)
++..+.+|+-+..+....+.+...|.. +++++...+. +-+.|-+.+.+.+++.+||++++.+ .++-|-+.+=.+.
T Consensus 30 ~~~eI~~Vis~~~~a~~~~~A~~~gIp-~~~~~~~~~~--~r~~~d~~~~~~l~~~~~Dliv~ag--y~~il~~~~l~~~ 104 (215)
T 3tqr_A 30 LAIEIRAVISNRADAYGLKRAQQADIP-THIIPHEEFP--SRTDFESTLQKTIDHYDPKLIVLAG--FMRKLGKAFVSHY 104 (215)
T ss_dssp CSEEEEEEEESCTTCHHHHHHHHTTCC-EEECCGGGSS--SHHHHHHHHHHHHHTTCCSEEEESS--CCSCCCHHHHHHT
T ss_pred CCCEEEEEEeCCcchHHHHHHHHcCCC-EEEeCccccC--chhHhHHHHHHHHHhcCCCEEEEcc--chhhCCHHHHhhc
Confidence 344555555443222223344444766 5555543221 2345667788889999999999876 3455555444433
No 40
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=20.35 E-value=1.2e+02 Score=26.90 Aligned_cols=74 Identities=7% Similarity=0.046 Sum_probs=41.0
Q ss_pred CCceEEEecCCCCchhhhcccccccEEEEEeCccccCCCCccHHHHHHHHHHhCCCcEEEeCCCcCCcchHHHHHhhcC
Q psy15579 260 VSPISDIIDIKSPDTFQVSKISGVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLD 338 (368)
Q Consensus 260 ~~v~av~ig~~~~~~~el~~~~GadkV~~v~~~~l~~y~~e~ya~aLa~l~~~~~p~~VL~~aT~~GrdlApRLAarL~ 338 (368)
..+.+|+-+..+....+.+...|.. +++++...+. +.+.|-+.+.+.+++++||++++.+ .++-|-+.+=.+..
T Consensus 31 ~~I~~Vit~~~~~~v~~~A~~~gIp-~~~~~~~~~~--~~~~~~~~~~~~l~~~~~Dliv~a~--y~~il~~~~l~~~~ 104 (212)
T 3av3_A 31 ARVALLVCDRPGAKVIERAARENVP-AFVFSPKDYP--SKAAFESEILRELKGRQIDWIALAG--YMRLIGPTLLSAYE 104 (212)
T ss_dssp EEEEEEEESSTTCHHHHHHHHTTCC-EEECCGGGSS--SHHHHHHHHHHHHHHTTCCEEEESS--CCSCCCHHHHHHTT
T ss_pred CeEEEEEeCCCCcHHHHHHHHcCCC-EEEeCccccc--chhhhHHHHHHHHHhcCCCEEEEch--hhhhCCHHHHhhhc
Confidence 3444454442222233444444666 4444433222 3456677788888899999998875 45555555544443
No 41
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=20.11 E-value=1.3e+02 Score=30.74 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=47.3
Q ss_pred cCceeEeeccccceeechhhhccCCCC-CcceeEeecccCCcccccccccccchhhhHHHHHHhhcCC
Q psy15579 195 APQVSKISGVTKVLTVENDALKGLLPE-NLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVS 261 (368)
Q Consensus 195 ~P~lyia~GISGai~~~~~~~~g~~~~-~~~V~I~~e~~ag~~~~~~~elv~~ak~llp~LA~~l~~~ 261 (368)
+.++.|.+|-|+.+.- .+.+...... ...++||.++-.. ...++.+.++.-++++.|+++||-.
T Consensus 393 ~aDLlLVIGTSL~VyP-aA~Lv~~a~~~~p~ViIN~ept~~--~~~Dl~l~G~cdevv~~L~~~LGw~ 457 (492)
T 4iao_A 393 ECDLLICIGTSLKVAP-VSEIVNMVPSHVPQVLINRDPVKH--AEFDLSLLGYCDDIAAMVAQKCGWT 457 (492)
T ss_dssp TCSEEEEESCCCCEET-GGGHHHHSBTTSCEEEEESSCCTT--SCCSEEEESCHHHHHHHHHHHTTCC
T ss_pred hCCEEEEeccCCCccc-hhhHHHHHhcCCcEEEEcCCCCCC--CCccEEEeCCHHHHHHHHHHHhCCC
Confidence 4789999999998764 4444333322 2367888887543 4578999999999999999999854
Done!