RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15579
(368 letters)
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport,
glutaric acidemia type II; HET: FAD AMP; 2.60A
{Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Length = 307
Score = 197 bits (504), Expect = 5e-61
Identities = 70/147 (47%), Positives = 90/147 (61%), Gaps = 26/147 (17%)
Query: 51 NAILTLKSKDPVKVVTVRGTSFPPAAKGGSASVEALANASVEANKLSEWVGQELSKSDRP 110
NAI +KSKD KV T+R SF A +GG+A V A + LS WV E+++SDRP
Sbjct: 130 NAIQVVKSKDAKKVFTIRTASFDAAGEGGTAPVTETA--AAADPGLSSWVADEVAESDRP 187
Query: 111 DLGSAKIVVSGGRGLKSADNFKLLYTLADKLGAAVGRGLKSADNFKLLYTLADKLGAAVG 170
+L SA+ VVSGGRGL S ++F ++ LADKLGAAVG
Sbjct: 188 ELTSARRVVSGGRGLGSKESFAIIEELADKLGAAVG------------------------ 223
Query: 171 ASRAAVDAGFVPNDMQIGQTGKIIAPQ 197
ASRAAVD+G+ PND Q+GQTGK++AP+
Sbjct: 224 ASRAAVDSGYAPNDWQVGQTGKVVAPE 250
Score = 119 bits (300), Expect = 3e-31
Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 276 QVSKISGVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAA 335
+ +KI+GV KVL E+ L E A LIV AG Y+HI A A++ K+++PRVAA
Sbjct: 46 EAAKIAGVAKVLVAEDALYGHRLAEPTAALIVGL--AGDYSHIAAPATTDAKNVMPRVAA 103
Query: 336 LLDVSPISDIIDIKSPDTFVRTIY 359
LLDV +SD+ I DTF R IY
Sbjct: 104 LLDVMVLSDVSAILDADTFERPIY 127
Score = 116 bits (294), Expect = 3e-30
Identities = 46/113 (40%), Positives = 60/113 (53%), Gaps = 12/113 (10%)
Query: 187 IGQTGKIIAPQVSKISGVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSM 246
G + K A + +KI+GV KVL E+ L E A LIV AG Y+HI A A++
Sbjct: 36 AGASAKAAAEEAAKIAGVAKVLVAEDALYGHRLAEPTAALIVGL--AGDYSHIAAPATTD 93
Query: 247 GKSLLPRVAALLDVSPISDIIDIKSPDTF----------QVSKISGVTKVLTV 289
K+++PRVAALLDV +SD+ I DTF QV K KV T+
Sbjct: 94 AKNVMPRVAALLDVMVLSDVSAILDADTFERPIYAGNAIQVVKSKDAKKVFTI 146
Score = 61.8 bits (151), Expect = 6e-11
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 7 STIIIGEHADGKLSASTLSAITAAQKIGGDISVLVAGSKVADVSNAILTLKSKDPVKVV 65
+ +++GE +G L+ + AA K GD++VL AG+ + + V V
Sbjct: 1 AVLLLGEVTNGALNRDATAKAVAAVKALGDVTVLCAGASAKAAAEEAAKIAGVAKVLVA 59
>1efv_A Electron transfer flavoprotein; electron transport, glutaric
acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Length = 315
Score = 195 bits (497), Expect = 7e-60
Identities = 83/148 (56%), Positives = 100/148 (67%), Gaps = 27/148 (18%)
Query: 51 NAILTLKSKDPVKVVTVRGTSFPPAAK-GGSASVEALANASVEANKLSEWVGQELSKSDR 109
NA+ T+K + VKV +VRGTSF AA GGSAS E + S ++SEW+ Q+L+KSDR
Sbjct: 134 NALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKAS--STSPVEISEWLDQKLTKSDR 191
Query: 110 PDLGSAKIVVSGGRGLKSADNFKLLYTLADKLGAAVGRGLKSADNFKLLYTLADKLGAAV 169
P+L AK+VVSGGRGLKS +NFKLLY LAD+L AAVG
Sbjct: 192 PELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVG----------------------- 228
Query: 170 GASRAAVDAGFVPNDMQIGQTGKIIAPQ 197
ASRAAVDAGFVPNDMQ+GQTGKI+AP+
Sbjct: 229 -ASRAAVDAGFVPNDMQVGQTGKIVAPE 255
Score = 125 bits (316), Expect = 2e-33
Identities = 54/84 (64%), Positives = 66/84 (78%)
Query: 276 QVSKISGVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAA 335
+ K++G+ KVL ++D KGLLPE L PLI++ Q YTHI AGAS+ GK+LLPRVAA
Sbjct: 48 DLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAA 107
Query: 336 LLDVSPISDIIDIKSPDTFVRTIY 359
L+V+PISDII IKSPDTFVRTIY
Sbjct: 108 KLEVAPISDIIAIKSPDTFVRTIY 131
Score = 121 bits (305), Expect = 7e-32
Identities = 55/113 (48%), Positives = 69/113 (61%), Gaps = 10/113 (8%)
Query: 187 IGQTGKIIAPQVSKISGVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSM 246
G +A + K++G+ KVL ++D KGLLPE L PLI++ Q YTHI AGAS+
Sbjct: 38 AGTKCDKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAF 97
Query: 247 GKSLLPRVAALLDVSPISDIIDIKSPDTF----------QVSKISGVTKVLTV 289
GK+LLPRVAA L+V+PISDII IKSPDTF K KV +V
Sbjct: 98 GKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSV 150
Score = 64.1 bits (157), Expect = 1e-11
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 7 STIIIGEHADGKLSASTLSAITAAQKIGGDISVLVAGSKVADVSNAILTLKSKDPVKVV 65
ST++I EHA+ L+ TL+ ITAA ++GG++S LVAG+K V+ + + V V
Sbjct: 3 STLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVA 61
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET:
AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP:
c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D*
3clt_D* 3clr_D* 3cls_D*
Length = 320
Score = 160 bits (407), Expect = 1e-46
Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 26/147 (17%)
Query: 51 NAILTLK-SKDPVKVVTVRGTSFPPAAKGGSASVEALANASVEANKLSEWVGQELSKSDR 109
+ + V+T+R + F P GS V + A ++ E+ +
Sbjct: 138 KVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNVD-APSVQSRSQNKDYVEVGGGND 196
Query: 110 PDLGSAKIVVSGGRGLKSADNFKLLYTLADKLGAAVGRGLKSADNFKLLYTLADKLGAAV 169
D+ + ++S GRG+ N + LAD+ GA +
Sbjct: 197 IDITTVDFIMSIGRGIGEETNVEQFRELADEAGATLC----------------------- 233
Query: 170 GASRAAVDAGFVPNDMQIGQTGKIIAP 196
SR DAG++P Q+GQ+GK++
Sbjct: 234 -CSRPIADAGWLPKSRQVGQSGKVVGS 259
Score = 84.1 bits (209), Expect = 2e-18
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 282 GVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVSP 341
GV +++ V+ ++ P+ + + A + +L S +A+
Sbjct: 56 GVDELVVVKGSSID-FDPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGF 114
Query: 342 ISDIIDIKSPD---TFVRTIY 359
+D+ ++ R Y
Sbjct: 115 ATDVYIVEYQGDELVATRGGY 135
Score = 81.0 bits (201), Expect = 2e-17
Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 15/113 (13%)
Query: 161 LADKLGAAVGASRAAVDAGFVPNDMQIGQTGKIIAPQVSKISGVTKVLTVENDALKGLLP 220
L V AV IG P +S +GV +++ V+ ++ P
Sbjct: 28 LKKSGEDKVVV---AV----------IGSQADAFVPALSV-NGVDELVVVKGSSID-FDP 72
Query: 221 ENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVSPISDIIDIKSPD 273
+ + + A + +L S +A+ +D+ ++
Sbjct: 73 DVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVEYQG 125
Score = 43.3 bits (103), Expect = 6e-05
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 10 IIGEHADGKLSASTLSAITAAQKI----GGDISVLVAGSKVADVSNA 52
+I EH L +L I AA + + V V GS+ A
Sbjct: 5 VIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPA 51
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.1 bits (184), Expect = 1e-14
Identities = 83/471 (17%), Positives = 154/471 (32%), Gaps = 150/471 (31%)
Query: 5 FESTIIIGE--HADGKLSASTLSAITAAQKIGGDI------SVLVAGSKVADVSN-AILT 55
FE+ + G HA L+A L ++ + ++A SN A+
Sbjct: 91 FENCYLEGNDIHA---LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 56 LKSKDPVKVVTVRG----------------TSFPPAAKG----GSASVEALANASVEANK 95
+ ++V + G ++ + ++ L +++A K
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 96 -------LSEWVGQELSKSDRPDLGSAKIVVSG-GRGLKSADNF----KLL-YT---LAD 139
+ EW+ + D+ L S +S G+ ++ KLL +T L
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIP--ISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 140 KLGAAVGRG--------LKSADNFKLLYTLADK-------LGAAV--GASRAAVDAGFVP 182
L A G + D+++ + K +G ++ +
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 183 NDMQIGQTGKIIAPQVSKISGVTKVLTVEN--DALKGLLPENLAPLIVSAQNAGKYTHIL 240
+ ++ + +P +S IS +T+ V++ + LP + +S N K ++
Sbjct: 326 DSLENNEGVP--SPMLS-ISNLTQE-QVQDYVNKTNSHLPAG-KQVEISLVNGAK-NLVV 379
Query: 241 AGASSMGKSL------LPRVAAL--LDVS----------------PIS------------ 264
+G +SL L + A LD S P++
Sbjct: 380 SGPP---QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 265 DII--DIKSPD-TFQVSKISGVTKVLTVEN-----D--ALKGLLPENLAPLIVS------ 308
D+I D+ + +F I + V + D L G + E + I+
Sbjct: 437 DLINKDLVKNNVSFNAKDIQ-----IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 309 AQNAGKYTHILA----GASSMGKSLLPR----------VAALLDVSPISDI 345
K THIL GAS +G L R VA LD++P D
Sbjct: 492 TTTQFKATHILDFGPGGASGLGV-LTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 56.6 bits (136), Expect = 8e-09
Identities = 62/337 (18%), Positives = 97/337 (28%), Gaps = 115/337 (34%)
Query: 3 ARFESTIIIGEHADGKLSASTLSAITAAQKIGGDIS-VLVAGSKVAD--VSNAILTLK-- 57
A + T + G+L + A +Q + ++ V +A + + + +
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGL---VTAVAIAETDSWESFFVSVRKAITVL 303
Query: 58 ------SKDPVKVVTVRGTSFPPAAKGGSA-----------SVEALANASVEANKLSEWV 100
+ TS PP+ S S+ L V+
Sbjct: 304 FFIGVRCYE-----AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ--DYVNKT 356
Query: 101 GQELSKSDRPDLGSAKIVVSGGRGLK-SADNFKL------LYTLAD---KLGAAVG---- 146
L + + +S L A N + LY L K A G
Sbjct: 357 NSHLPAGKQ-------VEIS----LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 147 ------RGLKSADNF---------KLLYTLADKLGAAVGASRAAVDAGFVPNDMQIGQTG 191
R LK ++ F LL +D + + + F D+QI
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL----VKNNVSFNAKDIQI---- 457
Query: 192 KIIAPQVSKISGVTKVLTVEND--ALKGLLPENLAPLIVS------AQNAGKYTHILA-- 241
P G +D L G + E + I+ K THIL
Sbjct: 458 ----PVYDTFDG--------SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Query: 242 --GASSMGKSLLPR----------VAALLDVSPISDI 266
GAS +G L R VA LD++P D
Sbjct: 506 PGGASGLGV-LTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 47.7 bits (113), Expect = 5e-06
Identities = 36/192 (18%), Positives = 62/192 (32%), Gaps = 54/192 (28%)
Query: 6 ESTIIIGEHADGKLSAS--------TLS-AITAAQKIGGDI--SVLVAG------SKVAD 48
ST G LSA+ + A K G I AG + A
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA--AL 1770
Query: 49 VSNA-ILTLKSKDPVKVVTVRG---TSFPPAAKGGSASVEALA------NASVEANKLSE 98
S A +++++ V+VV RG P + G ++ +A AS L
Sbjct: 1771 ASLADVMSIE--SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 99 WVGQELSKSDR---------PDLGSAKIVVSGGRGLKSADNFKLLYTLADKLGAAVGRGL 149
V + ++ + + V +G + + L T+ + L L
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVEN---QQYVAAG--------DLRALDTVTNVLNFI---KL 1874
Query: 150 KSADNFKLLYTL 161
+ D +L +L
Sbjct: 1875 QKIDIIELQKSL 1886
Score = 44.3 bits (104), Expect = 6e-05
Identities = 51/302 (16%), Positives = 100/302 (33%), Gaps = 83/302 (27%)
Query: 30 AQKIG-G-DISVLVAGSKVA-DVSN------------AILTLKSKDPVKVVTVRGTSFPP 74
+Q+ G G D L SK A DV N +IL + +P +T+ F
Sbjct: 1626 SQEQGMGMD---LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP-VNLTIH---FGG 1678
Query: 75 AAKG-------GSASVEALANASVEANKLSEWVGQELSK----SDRPDLGS------AKI 117
KG + E + + ++ K+ + + + + S++ L + A
Sbjct: 1679 E-KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 118 VVSGG--RGLKSADNFKLLYTLA---DKLG-----AAVGRGLKSADNFKLLYTLADKLGA 167
++ LKS T A LG A++ + ++++
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHS--LGEYAALASLADVMSIESLVEVVFY------- 1788
Query: 168 AVGASRAAVDAGFVPNDMQIGQTGKIIAPQVSKISGVTKVLTVENDALKGLLPENLAP-- 225
R VP D +IA ++ + +AL+ ++ E +
Sbjct: 1789 -----RGMTMQVAVPRDELGRSNYGMIAINPGRV-----AASFSQEALQYVV-ERVGKRT 1837
Query: 226 -LIVSAQN---AGK-YTHILAGASSMGKSLLPRVAALLDVSPISDIIDIKSPDTFQVSKI 280
+V N + Y + AG L V +L+ + I I+ + + ++
Sbjct: 1838 GWLVEIVNYNVENQQY--VAAGD----LRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Query: 281 SG 282
G
Sbjct: 1892 EG 1893
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha
sandwich, structural genomics, PSI-2, protein structure
initiative; 2.60A {Bacteroides thetaiotaomicron}
Length = 217
Score = 67.5 bits (165), Expect = 3e-13
Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 14/128 (10%)
Query: 161 LADKLGAAVGASRAAVDAGFVPNDMQIGQTGKIIAPQVSKISGVTKVLTVENDALKGLLP 220
LA++L + A V G K I Q+ GV K+ + + L
Sbjct: 31 LANELNCQLEA--------VV-----AGTGLKEIEKQILP-YGVDKLHVFDAEGLYPYTS 76
Query: 221 ENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVSPISDIIDIKSPDTFQVSKI 280
++V+ + L GA+ +G+ L PRV++ L +D ++ D +
Sbjct: 77 LPHTSILVNLFKEEQPQICLMGATVIGRDLGPRVSSALTSGLTADCTSLEIGDHEDKKEG 136
Query: 281 SGVTKVLT 288
+L
Sbjct: 137 KVYKNLLY 144
Score = 62.8 bits (153), Expect = 9e-12
Identities = 16/72 (22%), Positives = 31/72 (43%)
Query: 282 GVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVSP 341
GV K+ + + L ++V+ + L GA+ +G+ L PRV++ L
Sbjct: 59 GVDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATVIGRDLGPRVSSALTSGL 118
Query: 342 ISDIIDIKSPDT 353
+D ++ D
Sbjct: 119 TADCTSLEIGDH 130
Score = 36.6 bits (85), Expect = 0.006
Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 10 IIGEHADGKLSASTLSAITAAQKI----GGDISVLVAGSKVADVSNAI 53
+ E +G ++ +L +T + + + +VAG+ + ++ I
Sbjct: 8 VYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKEIEKQI 55
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein;
alpha-beta-alpha sandwich, structural genomics, PSI-2;
HET: MSE; 2.05A {Thermoplasma acidophilum}
Length = 166
Score = 37.0 bits (85), Expect = 0.003
Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 282 GVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVSP 341
G + + + E + + AG Y +I G++ +G+ + ++
Sbjct: 43 GSKVLYRAKKGTPFDAVSEGILKI------AGNYDYIAIGSTEVGREIAGYLSFKTGFYT 96
Query: 342 ISDIIDIKSPDTFVRT 357
++I ++ T
Sbjct: 97 ATEIFSLEFNGQKAHT 112
Score = 36.6 bits (84), Expect = 0.004
Identities = 9/69 (13%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 203 GVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVSP 262
G + + + E + + AG Y +I G++ +G+ + ++
Sbjct: 43 GSKVLYRAKKGTPFDAVSEGILKI------AGNYDYIAIGSTEVGREIAGYLSFKTGFYT 96
Query: 263 ISDIIDIKS 271
++I ++
Sbjct: 97 ATEIFSLEF 105
Score = 27.8 bits (61), Expect = 4.7
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 3/82 (3%)
Query: 9 IIIGEHADGKLSASTLSAITAAQKIGGDISVLVAGSKVADVSNAI---LTLKSKDPVKVV 65
I IG G+ A LS T S+ G K ++ + +++
Sbjct: 73 IAIGSTEVGREIAGYLSFKTGFYTATEIFSLEFNGQKAHTKRFFYGGKTVIEEESDARIL 132
Query: 66 TVRGTSFPPAAKGGSASVEALA 87
TV G + + L
Sbjct: 133 TVAPGVIEAKDLGTTPEIRDLE 154
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD,
structural genomics, NPPSFA; HET: NAD MES; 1.60A
{Pyrococcus horikoshii} PDB: 1ww8_A*
Length = 439
Score = 29.5 bits (67), Expect = 1.7
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 326 GKSLLPRVAALLDVSPISDIIDIKSPDTFVRTIYELEPS 364
GK+LL + +D PI I + P+ F+ + + P+
Sbjct: 92 GKALLFKRFGGVDAFPIM--IKEQEPNKFIDIVKAIAPT 128
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme,
structural genomics, JCS protein structure initiative,
PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3
PDB: 2hae_A*
Length = 388
Score = 29.0 bits (66), Expect = 2.9
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 326 GKSLLPRVAALLDVSPISDIIDIKSPDTFVRTIYELEPS 364
GK+ L + A +D PI + + + + LEPS
Sbjct: 98 GKAFLFKAFADIDAFPIC--LSESEEEKIISIVKSLEPS 134
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 28.6 bits (65), Expect = 3.3
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 326 GKSLLPRVAALLDVSPISDIIDIKSPDTFVRTIYELEPS 364
GK+ L + A +D PI +D K + + + L P+
Sbjct: 94 GKAALFKAFAGVDAIPIV--LDTKDTEEIISIVKALAPT 130
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 5.3
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 9/29 (31%)
Query: 211 ENDALKGL---L----PENLAP-LIVSAQ 231
E ALK L L ++ AP L + A
Sbjct: 18 EKQALKKLQASLKLYADDS-APALAIKAT 45
Score = 27.2 bits (59), Expect = 5.3
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 9/29 (31%)
Query: 290 ENDALKGL---L----PENLAP-LIVSAQ 310
E ALK L L ++ AP L + A
Sbjct: 18 EKQALKKLQASLKLYADDS-APALAIKAT 45
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS
epimerase family, structural genomics, joint center for
STR genomics, JCSG; 1.91A {Haemophilus somnus}
Length = 237
Score = 27.6 bits (62), Expect = 5.8
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 16 DGKLSASTLSAITAAQKIGGDISVLVAGSKV--ADVSNAILTLKSK 59
DG ++ I LV+GS + ++ + KS
Sbjct: 193 DGSMTLELAKYFKQG---THQIDWLVSGSALFSGELKTNLKVWKSS 235
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET:
FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3
d.145.1.1 PDB: 1i19_A*
Length = 561
Score = 27.8 bits (61), Expect = 5.9
Identities = 27/150 (18%), Positives = 44/150 (29%), Gaps = 39/150 (26%)
Query: 19 LSASTLSAITAAQKIGGDISVLVAGSKVADVSNAILTLKSKDPVKVVTVRGTSFPPAAKG 78
L + L A IGG ++V G+ + G + P
Sbjct: 128 LGWANLPAPGVLS-IGGALAVNAHGAALP-------------------AVGQTTLPGHTY 167
Query: 79 GSASVEALANASVEANKLSEWVGQ--ELSKSDRPDLGSAKIVVSGGRG------LKSADN 130
GS S V W G L R D ++ + GR +++ N
Sbjct: 168 GSLS------NLVTELTAVVWNGTTYALETYQRNDPRITPLLTNLGRCFLTSVTMQAGPN 221
Query: 131 FKLLYT-----LADKLGAAVGRGLKSADNF 155
F+ +L A G ++ + F
Sbjct: 222 FRQRCQSYTDIPWRELFAPKGADGRTFEKF 251
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.351
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,254,483
Number of extensions: 326380
Number of successful extensions: 524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 35
Length of query: 368
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 273
Effective length of database: 4,049,298
Effective search space: 1105458354
Effective search space used: 1105458354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.1 bits)