RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15579
(368 letters)
>d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron
transfer flavoprotein alpha subunit {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 79.8 bits (197), Expect = 5e-19
Identities = 55/97 (56%), Positives = 64/97 (65%), Gaps = 24/97 (24%)
Query: 108 DRPDLGSAKIVVSGGRGLKSADNFKLLYTLADKLGAAVGRGLKSADNFKLLYTLADKLGA 167
DRP+L AK+VVSGGRGLKS +NFKLLY LAD+L A
Sbjct: 1 DRPELTGAKVVVSGGRGLKS------------------------GENFKLLYDLADQLHA 36
Query: 168 AVGASRAAVDAGFVPNDMQIGQTGKIIAPQVSKISGV 204
AVGASRAAVDAGFVPNDMQ+GQTGKI+AP++ G+
Sbjct: 37 AVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGI 73
>d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron
transfer flavoprotein alpha subunit {Methylophilus
methylotrophus [TaxId: 17]}
Length = 123
Score = 69.4 bits (170), Expect = 3e-15
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 24/86 (27%)
Query: 111 DLGSAKIVVSGGRGLKSADNFKLLYTLADKLGAAVGRGLKSADNFKLLYTLADKLGAAVG 170
D+ + ++S GRG+ N + LAD+ GA +
Sbjct: 3 DITTVDFIMSIGRGIGE------------------------ETNVEQFRELADEAGATLC 38
Query: 171 ASRAAVDAGFVPNDMQIGQTGKIIAP 196
S DAG++P Q+GQ+GK++
Sbjct: 39 CSCPIADAGWLPKSRQVGQSGKVVGS 64
>d1efva1 c.26.2.3 (A:20-207) Large, alpha subunit of electron
transfer flavoprotein ETFP, N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 188
Score = 59.3 bits (143), Expect = 4e-11
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 6 ESTIIIGEHADGKLSASTLSAITAAQKIGGDISVLVAGSKVADVSNAILTLKSKDPVKVV 65
+ST++I EHA+ L+ TL+ ITAA ++GG++S LVAG+K V+ + + V V
Sbjct: 1 QSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVA 60
Score = 58.6 bits (141), Expect = 6e-11
Identities = 55/113 (48%), Positives = 69/113 (61%), Gaps = 10/113 (8%)
Query: 187 IGQTGKIIAPQVSKISGVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSM 246
G +A + K++G+ KVL ++D KGLLPE L PLI++ Q YTHI AGAS+
Sbjct: 37 AGTKCDKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAF 96
Query: 247 GKSLLPRVAALLDVSPISDIIDIKSPDTF----------QVSKISGVTKVLTV 289
GK+LLPRVAA L+V+PISDII IKSPDTF K KV +V
Sbjct: 97 GKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSV 149
Score = 57.8 bits (139), Expect = 1e-10
Identities = 54/85 (63%), Positives = 66/85 (77%)
Query: 275 FQVSKISGVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVA 334
+ K++G+ KVL ++D KGLLPE L PLI++ Q YTHI AGAS+ GK+LLPRVA
Sbjct: 46 QDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVA 105
Query: 335 ALLDVSPISDIIDIKSPDTFVRTIY 359
A L+V+PISDII IKSPDTFVRTIY
Sbjct: 106 AKLEVAPISDIIAIKSPDTFVRTIY 130
Score = 52.8 bits (126), Expect = 7e-09
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 7 STIIIGEHADGKLSASTLSAITAAQKIGGDISVLVAGSKVADV--SNAILTLKSKDPVKV 64
+ I G A GK ++A I I++ + V + NA+ T+K + VKV
Sbjct: 87 THICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKV 146
Query: 65 VTVRGTSFPPAAK-GGSASVEALANASVEANKLSEWVGQELSKS 107
+VRGTSF AA GGSAS E +S ++SEW+ Q+L+KS
Sbjct: 147 FSVRGTSFDAAATSGGSASSEKA--SSTSPVEISEWLDQKLTKS 188
>d1efpa1 c.26.2.3 (A:2-184) Large, alpha subunit of electron
transfer flavoprotein ETFP, N-terminal domain
{Paracoccus denitrificans [TaxId: 266]}
Length = 183
Score = 54.7 bits (131), Expect = 1e-09
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 51 NAILTLKSKDPVKVVTVRGTSFPPAAKGGSASVEALANASVEANKLSEWVGQELSK 106
NAI +KSKD KV T+R SF A +GG+A V A+ LS WV E+++
Sbjct: 130 NAIQVVKSKDAKKVFTIRTASFDAAGEGGTAPVTET--AAAADPGLSSWVADEVAE 183
Score = 54.3 bits (130), Expect = 2e-09
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 7 STIIIGEHADGKLSASTLSAITAAQKIGGDISVLVAGSKVADVSNAILTLKSKDPVKVV 65
+ +++GE +G L+ + AA K GD++VL AG+ + + V V
Sbjct: 1 AVLLLGEVTNGALNRDATAKAVAAVKALGDVTVLCAGASAKAAAEEAAKIAGVAKVLVA 59
Score = 53.9 bits (129), Expect = 2e-09
Identities = 41/96 (42%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 187 IGQTGKIIAPQVSKISGVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSM 246
G + K A + +KI+GV KVL E+ L E A LIV AG Y+HI A A++
Sbjct: 36 AGASAKAAAEEAAKIAGVAKVLVAEDALYGHRLAEPTAALIV--GLAGDYSHIAAPATTD 93
Query: 247 GKSLLPRVAALLDVSPISDIIDIKSPDTFQVSKISG 282
K+++PRVAALLDV +SD+ I DTF+ +G
Sbjct: 94 AKNVMPRVAALLDVMVLSDVSAILDADTFERPIYAG 129
Score = 51.2 bits (122), Expect = 2e-08
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 275 FQVSKISGVTKVLTVENDALKGLLPENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVA 334
+ +KI+GV KVL E+ L E A LIV AG Y+HI A A++ K+++PRVA
Sbjct: 45 EEAAKIAGVAKVLVAEDALYGHRLAEPTAALIV--GLAGDYSHIAAPATTDAKNVMPRVA 102
Query: 335 ALLDVSPISDIIDIKSPDTFVRTIY 359
ALLDV +SD+ I DTF R IY
Sbjct: 103 ALLDVMVLSDVSAILDADTFERPIY 127
>d3clsd1 c.26.2.3 (D:1-192) Large, alpha subunit of electron
transfer flavoprotein ETFP, N-terminal domain
{Methylophilus methylotrophus [TaxId: 17]}
Length = 192
Score = 41.6 bits (97), Expect = 4e-05
Identities = 21/99 (21%), Positives = 29/99 (29%), Gaps = 5/99 (5%)
Query: 10 IIGEHADGKLSASTLSAITAAQKI----GGDISVLVAGSKVADVSNAILTLKSKDPVKVV 65
+I EH L +L I AA + + V V GS+ A+ D + VV
Sbjct: 5 VIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALSVNGV-DELVVV 63
Query: 66 TVRGTSFPPAAKGGSASVEALANASVEANKLSEWVGQEL 104
F P S S A+
Sbjct: 64 KGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDSLGY 102
Score = 40.5 bits (94), Expect = 1e-04
Identities = 12/114 (10%), Positives = 34/114 (29%), Gaps = 11/114 (9%)
Query: 160 TLADKLGAAVGASRAAVDAGFVPNDMQIGQTGKIIAPQVSKISGVTKVLTVENDALKGLL 219
A+ L + G + ++GV +++ V+ ++
Sbjct: 23 GAANGLKKSGEDKVVVAVIGSQADA----------FVPALSVNGVDELVVVKGSSID-FD 71
Query: 220 PENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVSPISDIIDIKSPD 273
P+ + + A + +L S +A+ +D+ ++
Sbjct: 72 PDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVEYQG 125
Score = 40.5 bits (94), Expect = 1e-04
Identities = 15/122 (12%), Positives = 42/122 (34%), Gaps = 9/122 (7%)
Query: 238 HILAGASSMGKSLLPRVAALLDVSPISDIIDIKSPDTFQVSKISGVTKVLTVENDALKGL 297
++ A+ + KS +V + S + S ++GV +++ V+ ++
Sbjct: 20 ELIGAANGLKKSGEDKVVVAVIGSQADAFVPALS--------VNGVDELVVVKGSSID-F 70
Query: 298 LPENLAPLIVSAQNAGKYTHILAGASSMGKSLLPRVAALLDVSPISDIIDIKSPDTFVRT 357
P+ + + A + +L S +A+ +D+ ++ +
Sbjct: 71 DPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVEYQGDELVA 130
Query: 358 IY 359
Sbjct: 131 TR 132
Score = 38.2 bits (88), Expect = 5e-04
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 9 IIIGEHADGKLSASTLSAITAAQKIGGDISVLVAGSKVADVS-----NAILTLK-SKDPV 62
+++ D AS+L++ T V G ++ + +
Sbjct: 91 VLLPHSVDSLGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKST 150
Query: 63 KVVTVRGTSFPPAAKGGSASVEALANASVEAN 94
V+T+R + F P GS V + SV++
Sbjct: 151 VVLTIRPSVFKPLEGAGSPVVSNVDAPSVQSR 182
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 27.2 bits (59), Expect = 3.2
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 16 DGKLSASTLSAITAAQKIGGDISVLVAGSKVADVSNAILTLKSKDPVKVV 65
++ + A+ AA+++ VL A + + K V +
Sbjct: 22 RFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLT 71
>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 279
Score = 27.2 bits (60), Expect = 3.6
Identities = 10/74 (13%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 40 LVAGSKVADVSNAILTLKSKDPVK-VVTV----RGTSFPPAAKGGSASVEALANASVEAN 94
+ S+ A+ P+ +++V +G P G S+ + ++ A
Sbjct: 84 AMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAG 143
Query: 95 KLSEWVGQELSKSD 108
++ + + L +++
Sbjct: 144 AYNKAIQERLVQAE 157
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.351
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,177,381
Number of extensions: 50610
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 19
Length of query: 368
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 281
Effective length of database: 1,213,086
Effective search space: 340877166
Effective search space used: 340877166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.3 bits)