BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15582
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 98/169 (57%), Gaps = 8/169 (4%)
Query: 253 NNPKPLPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKW 311
N KPLP+ +D+++ + ++GV+ FSLG+ + + + E++ I + Q P+ +++W++
Sbjct: 2 NAAKPLPKEXEDFVQSSGENGVVVFSLGSXVSNXT--EERANVIASALAQIPQ-KVLWRF 58
Query: 312 EEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQ 371
+ + L N KW+PQ+D+L HPK + FI GG EAI+ G+P +GIP FADQ
Sbjct: 59 DGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
Query: 372 DTNVRKLESMDVARFLEYENITAETLVTLMKSIL----YNETVYRKSQV 416
N+ ++ A +++ ++ L+ +K ++ Y E V + S++
Sbjct: 119 PDNIAHXKARGAAVRVDFNTXSSTDLLNALKRVINDPSYKENVXKLSRI 167
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 126/308 (40%), Gaps = 35/308 (11%)
Query: 140 YIDENHVKFDLIIYEGLLHTAYLGFLPKLGYTQSMTLMERMNNLFMQLYSKFYIRSRLMK 199
YIDE K + +G L F+P + + L E + +F L S F SR++
Sbjct: 152 YIDEIREKIGVSGIQGR-EDELLNFIPGMSKVRFRDLQEGI--VFGNLNSLF---SRMLH 205
Query: 200 KQDEIMERYFGTRGLSGKQLEENKTLLFISTSWLLTYPRPVFPNTILLGPIHLNNPKPLP 259
+ +++ + S ++L+++ T S L TY + +GP +L P P+
Sbjct: 206 RMGQVLPKATAVFINSFEELDDSLTNDLKSK--LKTY--------LNIGPFNLITPPPVV 255
Query: 260 QNLKDWIEGAKD----GVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI 315
N ++ K+ V+Y S GT + + + R IW +
Sbjct: 256 PNTTGCLQWLKERKPTSVVYISFGT----VTTPPPAEVVALSEALEASRVPFIWSLRDKA 311
Query: 316 LPDLPSNVICRK--------WLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPF 367
LP + + W PQ ++LAH V F+ G S E++ GVP+I PF
Sbjct: 312 RVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPF 371
Query: 368 FADQDTNVRKLES-MDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNT--Q 424
F DQ N R +E +++ +E T L++ IL E + + L T +
Sbjct: 372 FGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADR 431
Query: 425 MMSPKDTA 432
+ PK ++
Sbjct: 432 AVGPKGSS 439
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 316 LPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNV 375
L ++P NV +W+PQ DIL K FI G+ S+ EA+ VPM+ +P A+Q N
Sbjct: 300 LGEVPPNVEVHQWVPQLDILT--KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNA 357
Query: 376 RKLESMDVARFLEYENITAETLVTLMKSILYNETVYRK 413
++ + + R + + +TAE L + ++ + V +
Sbjct: 358 ERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGVAER 395
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Query: 273 VIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP----DLPSNVICRKW 328
V+ SLG+ + Q + V +F P ++ + + P +LP NV W
Sbjct: 234 VVLVSLGSAF---TKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDW 290
Query: 329 LPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLE 388
+PQ IL + LF+ G SQE + PMI +P DQ N L+ + VAR L
Sbjct: 291 VPQLAILR--QADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLA 348
Query: 389 YENITAETLVTLMKSILYNETVYRK 413
E TA+ L +++ + V R+
Sbjct: 349 TEEATADLLRETALALVDDPEVARR 373
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 328 WLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVR 376
W PQ +L HP + F+ G S+ E+I GVPM+ PFFADQ T+ R
Sbjct: 360 WCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCR 408
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 21/177 (11%)
Query: 247 LGPIHLNNPK---PLPQNLKDWIEGAKDG-VIYFSLGTNMQSASLQEDKRKAIVDSFKQ- 301
+GP +L P+ +W++ ++ V+Y S G+ + + A+ +S ++
Sbjct: 245 VGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPP---HELTALAESLEEC 301
Query: 302 -FPRHRIIWKWEEDILPDLPSNVICR--------KWLPQHDILAHPKVKLFIMQGGLQSS 352
FP IW + D LP + R W PQ +IL H V +F+ G S
Sbjct: 302 GFP---FIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSV 358
Query: 353 QEAIHFGVPMIGIPFFADQDTNVRKLES-MDVARFLEYENITAETLVTLMKSILYNE 408
E I GVPMI PFF DQ N ES +++ ++ +T E++ ++ + +E
Sbjct: 359 LECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSE 415
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 262 LKDWIEGAKD-GVIYFSLGT--NMQSASLQEDKRKAIVDSFKQFPRHRII---WKWEEDI 315
L +W A D V+ SLGT N + ++ R +F P H + + +
Sbjct: 237 LGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCAR-----AFDGQPWHVVXTLGGQVDPAA 291
Query: 316 LPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNV 375
L DLP NV +W+P +L V + GG + EA+++G P++ +P D
Sbjct: 292 LGDLPPNVEAHRWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXA 349
Query: 376 RKLESMDVARFLEYENITAETLV 398
R+++ + + L E +TL+
Sbjct: 350 RRVDQLGLGAVLPGEKADGDTLL 372
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 33 LIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEP 72
L+I S+ +P + + ELVRRGH V+ + EP
Sbjct: 23 LLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEP 62
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 262 LKDWIEGAKD-GVIYFSLGT--NMQSASLQEDKRKAIVDSFKQFPRHRII---WKWEEDI 315
L +W A D V+ SLGT N + ++ R +F P H + + +
Sbjct: 237 LGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCAR-----AFDGQPWHVVXTLGGQVDPAA 291
Query: 316 LPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNV 375
L DLP NV +W+P +L V + GG + EA+++G P++ +P D
Sbjct: 292 LGDLPPNVEAHRWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXA 349
Query: 376 RKLESMDVARFLEYENITAETLV 398
R+++ + + L E +TL+
Sbjct: 350 RRVDQLGLGAVLPGEKADGDTLL 372
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 33 LIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEP 72
L+I S+ +P + + ELVRRGH V+ + EP
Sbjct: 23 LLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEP 62
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 328 WLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNV 375
W PQ +LAHP F+ G S+ E++ G+P+I P +A+Q N
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNA 393
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Query: 322 NVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLE-- 379
+IC W PQ ++LAH + F+ G S E++ FGVP++ P +A+Q N +L
Sbjct: 334 GMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE 392
Query: 380 -SMDVARFLEYEN----ITAETLVTLMKSILYNET-VYRKSQVYSKLSNTQMM 426
+ + ++Y + AE + +K ++ ++ V++K Q ++S ++
Sbjct: 393 WGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVV 445
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Query: 322 NVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLE-- 379
+IC W PQ ++LAH + F+ G S E++ FGVP++ P +A+Q N +L
Sbjct: 334 GMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE 392
Query: 380 -SMDVARFLEYEN----ITAETLVTLMKSILYNET-VYRKSQVYSKLSNTQMM 426
+ + ++Y + AE + +K ++ ++ V++K Q ++S ++
Sbjct: 393 WGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVV 445
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 9/175 (5%)
Query: 273 VIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEE-DI--LPDLPSNVICRKWL 329
++Y +LGT+ S E R AI D ++ D+ L ++P+NV W+
Sbjct: 244 LVYLTLGTS--SGGTVEVLRAAI-DGLAGLDADVLVASGPSLDVSGLGEVPANVRLESWV 300
Query: 330 PQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEY 389
PQ +L H V L + GG ++ A+ GVP + P+ D N + + L
Sbjct: 301 PQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLP 358
Query: 390 ENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVLKAEG 444
+NI+ +++ K +L E+ YR P + + ++ G
Sbjct: 359 DNISPDSVSGAAKRLLAEES-YRAGARAVAAEIAAXPGPDEVVRLLPGFASRSAG 412
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 293 KAIVDSFKQFPRH---RIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGL 349
+A +F P H I + +L LP NV +W+P H +LAH + L G
Sbjct: 250 RACAQAFADTPWHVVXAIGGFLDPAVLGPLPPNVEAHQWIPFHSVLAHARACL--THGTT 307
Query: 350 QSSQEAIHFGVPMIGIPFFADQ 371
+ EA GVP++ +P FA +
Sbjct: 308 GAVLEAFAAGVPLVLVPHFATE 329
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 320 PSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLE 379
P+NV +W+P +L I GG + A+ GVP IP + QDTN L
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 380 SMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWI 436
+ + E ++ AE L+ E R Q S +M P +TA +
Sbjct: 345 GLGIGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMS-----EMPPPAETAAXLV 396
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 320 PSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLE 379
P+NV +W+P +L I GG + A+ GVP IP + QDTN L
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 380 SMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAV 433
+ + E ++ AE L+ E R Q S +M P +TA
Sbjct: 345 GLGIGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMS-----EMPPPAETAA 393
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 8/170 (4%)
Query: 252 LNNPKPLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWK- 310
L + +PL L +++ A +Y G S D + +D+ + R I+ +
Sbjct: 220 LPDERPLSPELAAFLD-AGPPPVYLGFG----SLGAPADAVRVAIDAIRAHGRRVILSRG 274
Query: 311 WEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFAD 370
W + +LPD ++ + H +L +V I GG ++ A G P I +P AD
Sbjct: 275 WADLVLPDDGADCFAIGEV-NHQVL-FGRVAAVIHHGGAGTTHVAARAGAPQILLPQMAD 332
Query: 371 QDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKL 420
Q ++ + V + T ++L + + L ET R + V +
Sbjct: 333 QPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALTPETHARATAVAGTI 382
>pdb|1RRV|A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin.
pdb|1RRV|B Chain B, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin
Length = 416
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 6/168 (3%)
Query: 252 LNNPKPLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWK- 310
L++ +PLP L+ ++ A ++ G++ S D K V++ + R I+ +
Sbjct: 219 LSDERPLPPELEAFL-AAGSPPVHIGFGSS--SGRGIADAAKVAVEAIRAQGRRVILSRG 275
Query: 311 WEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFAD 370
W E +LPD + + + +V I G + A GVP + IP D
Sbjct: 276 WTELVLPDDRDDCFAIDEVNFQALFR--RVAAVIHHGSAGTEHVATRAGVPQLVIPRNTD 333
Query: 371 QDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYS 418
Q ++ ++ + + T E+L + ++L ET R V
Sbjct: 334 QPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVLAPETRARAEAVAG 381
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 5/116 (4%)
Query: 318 DLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRK 377
++P NV ++P H +L P + GG S A GVP + +P D ++
Sbjct: 316 NIPDNVRTVGFVPMHALL--PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQR 373
Query: 378 LESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAV 433
+ L +T + L +K +L ++ +R +++ + + P V
Sbjct: 374 TQEFGAGIALPVPELTPDQLRESVKRVL-DDPAHRAGA--ARMRDDMLAEPSPAEV 426
>pdb|3HB7|A Chain A, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|C Chain C, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|B Chain B, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|D Chain D, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|E Chain E, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|F Chain F, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|G Chain G, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|H Chain H, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
Length = 204
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 14/98 (14%)
Query: 257 PLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL 316
P Q + +W+ G + G ++ +QE RK D F+ P H + W D +
Sbjct: 36 PDLQKIFEWVRGRE--------GDDIHLVHIQEAHRKNDAD-FRVRPLHAVKGTWGSDFI 86
Query: 317 PDL---PSNVICRKWLPQHDILAHPKVKLFIMQGGLQS 351
P+L I +K +H AH + L++ + G+ +
Sbjct: 87 PELYPQEDEYIVQK--RRHSGFAHTDLDLYLKEEGIDT 122
>pdb|1LM7|A Chain A, Structures Of Two Intermediate Filament-Binding Fragments
Of Desmoplakin Reveal A Unique Repeat Motif Structure
pdb|1LM7|B Chain B, Structures Of Two Intermediate Filament-Binding Fragments
Of Desmoplakin Reveal A Unique Repeat Motif Structure
Length = 248
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 47 FIAIGKELVRRGHTVTM----IGTDPLKEPPVNYT-DIDLSFSYKYFKPQLQKGEVLPDA 101
F A+ KEL+ +GH + + I T + +P ++ +D+++ YF +L E+L D
Sbjct: 143 FQAMNKELIEKGHGIRLLEAQIATGGIIDPKESHRLPVDIAYKRGYFNEELS--EILSDP 200
Query: 102 VDNQR 106
D+ +
Sbjct: 201 SDDTK 205
>pdb|2YW2|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YW2|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YYA|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
pdb|2YYA|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
Length = 424
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 126 EDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTA----YLGFLPKLGYTQSMTLMERMN 181
E +++ + +++ K + E + + +Y GL+ T L F +LG ++ ++ R+
Sbjct: 242 EKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITKEGPKVLEFNVRLGDPEAQPILMRVK 301
Query: 182 NLFMQLYSKFYIRSRLMKKQDE 203
N F++ FY + K+DE
Sbjct: 302 NDFLETLLNFYEGKDVHIKEDE 323
>pdb|3VX3|A Chain A, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
pdb|3VX3|B Chain B, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
Length = 248
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 355 AIHFGVP-MIGIPFFADQDTNVRKLESM 381
A FGVP ++GIPF+ D D V +E +
Sbjct: 205 AEEFGVPYLVGIPFYPDLDAKVGNVEEL 232
>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
Length = 387
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 303 PRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPM 362
P HR + L DLP N + +P + L +L I GG ++ A G+P
Sbjct: 259 PEHRAL-------LTDLPDNARIAESVPLNLFLR--TCELVICAGGSGTAFTATRLGIPQ 309
Query: 363 IGIPFFADQDTNVRKLESMDVARFLEYENITAE 395
+ +P + DQ R L + L E ++
Sbjct: 310 LVLPQYFDQFDYARNLAAAGAGICLPDEQAQSD 342
>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
Length = 391
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 303 PRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPM 362
P HR + L DLP N + +P + L +L I GG ++ A G+P
Sbjct: 259 PEHRAL-------LTDLPDNARIAESVPLNLFLR--TCELVICAGGSGTAFTATRLGIPQ 309
Query: 363 IGIPFFADQDTNVRKLESMDVARFLEYENITAE 395
+ +P + DQ R L + L E ++
Sbjct: 310 LVLPQYFDQFDYARNLAAAGAGICLPDEQAQSD 342
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,222,552
Number of Sequences: 62578
Number of extensions: 608904
Number of successful extensions: 1257
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1229
Number of HSP's gapped (non-prelim): 36
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)