Query psy15582
Match_columns 477
No_of_seqs 147 out of 1560
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 16:18:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA03392 egt ecdysteroid UDP-g 100.0 2E-71 4.2E-76 563.5 51.0 446 14-474 5-499 (507)
2 PF00201 UDPGT: UDP-glucoronos 100.0 5.3E-68 1.2E-72 547.6 2.3 428 30-475 1-476 (500)
3 KOG1192|consensus 100.0 1.2E-44 2.6E-49 373.8 43.9 424 28-472 5-484 (496)
4 PLN02670 transferase, transfer 100.0 4.1E-40 8.8E-45 329.1 33.9 383 29-443 6-466 (472)
5 PLN02208 glycosyltransferase f 100.0 3.3E-40 7.2E-45 328.9 30.7 375 29-439 4-437 (442)
6 cd03784 GT1_Gtf_like This fami 100.0 3E-39 6.6E-44 324.6 35.1 380 30-438 1-400 (401)
7 PLN02562 UDP-glycosyltransfera 100.0 1.1E-39 2.4E-44 326.9 31.0 199 221-424 204-430 (448)
8 PLN02207 UDP-glycosyltransfera 100.0 9.2E-40 2E-44 326.2 27.4 199 221-423 210-444 (468)
9 TIGR01426 MGT glycosyltransfer 100.0 4.7E-39 1E-43 321.9 32.3 365 37-441 2-391 (392)
10 PLN03007 UDP-glucosyltransfera 100.0 3.2E-38 7E-43 320.3 31.0 375 28-424 4-460 (482)
11 PLN02554 UDP-glycosyltransfera 100.0 4E-38 8.7E-43 319.2 30.6 218 221-442 209-479 (481)
12 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.5E-37 3.2E-42 310.7 34.1 198 221-423 202-429 (451)
13 PLN00414 glycosyltransferase f 100.0 3.9E-38 8.5E-43 314.4 29.9 377 29-444 4-443 (446)
14 PLN02210 UDP-glucosyl transfer 100.0 3.8E-38 8.2E-43 316.2 29.1 360 28-423 7-434 (456)
15 COG1819 Glycosyl transferases, 100.0 2.2E-38 4.8E-43 313.6 24.8 215 216-444 186-403 (406)
16 PLN02764 glycosyltransferase f 100.0 1.3E-37 2.8E-42 308.6 29.5 223 221-448 198-452 (453)
17 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.7E-37 5.7E-42 311.0 31.8 218 222-443 214-473 (477)
18 PLN02448 UDP-glycosyltransfera 100.0 9.1E-38 2E-42 315.4 28.5 364 26-423 7-436 (459)
19 PLN02992 coniferyl-alcohol glu 100.0 6.2E-37 1.3E-41 306.5 31.6 379 30-442 6-470 (481)
20 PLN03004 UDP-glycosyltransfera 100.0 4.5E-37 9.7E-42 306.0 29.1 199 221-423 207-440 (451)
21 PLN02555 limonoid glucosyltran 100.0 1.8E-36 3.9E-41 303.9 33.4 217 221-442 212-470 (480)
22 PLN02167 UDP-glycosyltransfera 100.0 1.1E-36 2.5E-41 308.1 27.3 217 221-441 214-472 (475)
23 PLN02173 UDP-glucosyl transfer 100.0 4.4E-36 9.6E-41 298.7 30.9 356 30-422 6-426 (449)
24 PLN02152 indole-3-acetate beta 100.0 1.4E-35 3.1E-40 295.6 32.1 197 223-423 197-435 (455)
25 PLN00164 glucosyltransferase; 100.0 5.7E-36 1.2E-40 302.4 29.4 217 221-441 205-473 (480)
26 PLN03015 UDP-glucosyl transfer 100.0 3.5E-36 7.5E-41 299.4 24.8 200 221-424 203-448 (470)
27 PLN02534 UDP-glycosyltransfera 100.0 1.3E-34 2.7E-39 291.1 31.0 390 29-442 8-487 (491)
28 PRK12446 undecaprenyldiphospho 100.0 8.8E-26 1.9E-30 220.9 30.9 325 29-438 1-351 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 3.8E-25 8.2E-30 215.3 25.3 302 30-404 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 2.1E-22 4.6E-27 194.7 31.0 327 31-441 2-356 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 1.9E-22 4E-27 196.1 23.3 128 270-411 187-318 (321)
32 COG4671 Predicted glycosyl tra 99.9 2.8E-22 6E-27 184.2 21.4 349 27-441 7-390 (400)
33 PRK00726 murG undecaprenyldiph 99.9 7.8E-20 1.7E-24 180.9 30.2 145 293-441 200-356 (357)
34 cd03785 GT1_MurG MurG is an N- 99.8 2E-18 4.4E-23 170.3 28.0 157 271-434 181-349 (350)
35 PRK13608 diacylglycerol glucos 99.8 1.2E-18 2.5E-23 174.0 23.3 160 270-442 201-371 (391)
36 PRK13609 diacylglycerol glucos 99.8 9.3E-19 2E-23 174.7 22.2 160 270-442 201-371 (380)
37 TIGR01133 murG undecaprenyldip 99.8 1.8E-16 3.8E-21 156.3 25.9 102 330-435 243-347 (348)
38 TIGR03590 PseG pseudaminic aci 99.7 2.8E-17 6.1E-22 155.8 15.5 242 39-377 12-278 (279)
39 PLN02605 monogalactosyldiacylg 99.7 1.1E-15 2.4E-20 152.3 24.8 209 221-440 149-379 (382)
40 TIGR00215 lpxB lipid-A-disacch 99.7 2.7E-15 5.8E-20 149.1 17.8 159 270-437 190-383 (385)
41 PF04101 Glyco_tran_28_C: Glyc 99.6 4.6E-17 1E-21 142.7 1.2 140 273-416 1-153 (167)
42 PRK00025 lpxB lipid-A-disaccha 99.6 3.3E-13 7.1E-18 134.7 21.0 164 271-442 186-377 (380)
43 cd03814 GT1_like_2 This family 99.5 7.2E-12 1.6E-16 123.5 26.5 156 270-437 195-360 (364)
44 COG3980 spsG Spore coat polysa 99.5 1.8E-13 3.9E-18 122.8 12.2 145 271-423 158-309 (318)
45 PLN02871 UDP-sulfoquinovose:DA 99.5 5.2E-11 1.1E-15 122.0 27.6 152 271-436 262-428 (465)
46 TIGR03492 conserved hypothetic 99.4 2.1E-11 4.5E-16 121.4 19.5 202 223-439 161-395 (396)
47 cd03818 GT1_ExpC_like This fam 99.4 5.1E-10 1.1E-14 112.4 28.3 143 271-422 210-381 (396)
48 cd03808 GT1_cap1E_like This fa 99.4 4.4E-10 9.5E-15 110.0 27.2 142 270-421 186-343 (359)
49 cd03820 GT1_amsD_like This fam 99.4 7.5E-10 1.6E-14 107.9 28.6 155 270-434 176-345 (348)
50 cd04962 GT1_like_5 This family 99.4 2.5E-10 5.3E-15 113.4 25.5 156 270-435 195-364 (371)
51 cd03794 GT1_wbuB_like This fam 99.4 1.7E-10 3.8E-15 114.3 23.6 152 270-431 218-389 (394)
52 cd03823 GT1_ExpE7_like This fa 99.4 2.3E-10 4.9E-15 112.4 24.1 142 270-422 189-344 (359)
53 cd03801 GT1_YqgM_like This fam 99.3 2.4E-09 5.3E-14 104.9 27.9 141 270-419 197-353 (374)
54 cd03795 GT1_like_4 This family 99.3 2.1E-09 4.5E-14 105.9 27.0 140 270-422 189-347 (357)
55 cd03817 GT1_UGDG_like This fam 99.3 7E-10 1.5E-14 109.4 23.3 144 270-423 200-359 (374)
56 cd03800 GT1_Sucrose_synthase T 99.3 1.1E-09 2.4E-14 109.7 24.8 143 270-421 218-382 (398)
57 cd04951 GT1_WbdM_like This fam 99.3 1.6E-09 3.4E-14 107.0 24.9 151 270-432 186-351 (360)
58 cd05844 GT1_like_7 Glycosyltra 99.2 2.6E-09 5.7E-14 105.9 24.4 142 271-421 187-350 (367)
59 PRK10307 putative glycosyl tra 99.2 2.8E-08 6.1E-13 100.3 31.3 149 270-429 227-395 (412)
60 cd03799 GT1_amsK_like This is 99.2 1.1E-09 2.4E-14 107.8 20.6 142 270-421 177-341 (355)
61 cd03805 GT1_ALG2_like This fam 99.2 8.8E-09 1.9E-13 103.2 27.5 141 270-420 209-377 (392)
62 cd03822 GT1_ecORF704_like This 99.2 8E-09 1.7E-13 101.9 26.0 154 270-434 183-360 (366)
63 cd03821 GT1_Bme6_like This fam 99.2 5.4E-09 1.2E-13 103.0 24.1 154 270-434 201-372 (375)
64 cd03816 GT1_ALG1_like This fam 99.2 2.9E-08 6.4E-13 100.1 29.3 141 270-423 230-400 (415)
65 cd03798 GT1_wlbH_like This fam 99.2 1.7E-08 3.8E-13 99.2 27.0 131 270-410 200-347 (377)
66 PRK05749 3-deoxy-D-manno-octul 99.2 5.2E-09 1.1E-13 106.1 23.0 113 322-440 303-421 (425)
67 TIGR03449 mycothiol_MshA UDP-N 99.2 4.1E-08 8.9E-13 98.9 28.4 160 270-440 217-399 (405)
68 cd03812 GT1_CapH_like This fam 99.1 1.6E-08 3.6E-13 99.7 23.8 140 270-419 190-343 (358)
69 cd03796 GT1_PIG-A_like This fa 99.1 7.5E-08 1.6E-12 96.7 27.7 128 270-408 191-334 (398)
70 cd03807 GT1_WbnK_like This fam 99.1 5.2E-08 1.1E-12 95.6 25.7 151 270-431 191-356 (365)
71 TIGR03088 stp2 sugar transfera 99.1 2.6E-07 5.7E-12 92.0 29.1 160 270-439 192-369 (374)
72 cd03811 GT1_WabH_like This fam 99.0 5.6E-08 1.2E-12 94.7 23.2 134 270-416 187-341 (353)
73 cd03809 GT1_mtfB_like This fam 99.0 1.1E-07 2.4E-12 93.6 24.8 154 270-435 193-363 (365)
74 cd03792 GT1_Trehalose_phosphor 99.0 2E-07 4.3E-12 92.8 26.7 157 270-437 188-367 (372)
75 cd03825 GT1_wcfI_like This fam 99.0 2.2E-07 4.7E-12 91.8 26.7 128 303-439 224-361 (365)
76 PF04007 DUF354: Protein of un 99.0 8.3E-08 1.8E-12 92.3 22.2 159 264-440 172-334 (335)
77 PRK09922 UDP-D-galactose:(gluc 99.0 1.6E-08 3.4E-13 100.2 16.5 156 271-439 179-356 (359)
78 TIGR03087 stp1 sugar transfera 99.0 2.3E-07 5E-12 93.2 25.0 156 272-440 224-394 (397)
79 cd03819 GT1_WavL_like This fam 99.0 2.3E-07 5E-12 91.3 24.2 143 270-422 183-346 (355)
80 cd04955 GT1_like_6 This family 98.9 1.3E-06 2.9E-11 86.1 26.6 145 273-434 194-357 (363)
81 TIGR02472 sucr_P_syn_N sucrose 98.9 6.9E-07 1.5E-11 90.9 24.2 113 319-438 315-436 (439)
82 cd03802 GT1_AviGT4_like This f 98.9 1.5E-06 3.3E-11 84.8 25.3 122 271-408 170-309 (335)
83 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 1.8E-07 4E-12 92.6 18.6 134 270-415 197-345 (363)
84 TIGR02149 glgA_Coryne glycogen 98.8 6.9E-06 1.5E-10 82.1 28.4 156 270-436 199-381 (388)
85 PLN02846 digalactosyldiacylgly 98.8 8.9E-07 1.9E-11 88.9 21.5 124 273-408 229-364 (462)
86 PRK15179 Vi polysaccharide bio 98.8 7.9E-06 1.7E-10 86.5 27.9 141 271-418 516-674 (694)
87 TIGR02468 sucrsPsyn_pln sucros 98.7 6.8E-06 1.5E-10 89.1 27.5 167 261-441 469-670 (1050)
88 KOG3349|consensus 98.7 5.8E-08 1.3E-12 79.1 8.8 117 271-389 3-134 (170)
89 TIGR02470 sucr_synth sucrose s 98.7 1.4E-05 3E-10 84.8 28.2 159 271-441 549-746 (784)
90 COG1519 KdtA 3-deoxy-D-manno-o 98.7 1.8E-05 3.9E-10 76.6 24.8 206 221-436 176-415 (419)
91 PRK15427 colanic acid biosynth 98.6 1.2E-06 2.5E-11 88.2 16.8 156 271-435 221-399 (406)
92 PRK15484 lipopolysaccharide 1, 98.6 3.7E-06 8E-11 83.9 19.2 159 271-440 192-375 (380)
93 PLN02275 transferase, transfer 98.6 1.3E-05 2.9E-10 79.6 22.4 92 303-405 260-371 (371)
94 PF00534 Glycos_transf_1: Glyc 98.5 1.3E-06 2.9E-11 76.5 12.0 142 270-420 13-171 (172)
95 PRK00654 glgA glycogen synthas 98.5 4.1E-05 8.9E-10 78.5 24.0 138 271-415 281-439 (466)
96 PLN00142 sucrose synthase 98.5 0.0002 4.3E-09 76.3 28.8 164 271-442 572-770 (815)
97 cd03806 GT1_ALG11_like This fa 98.5 9.2E-05 2E-09 74.8 25.5 130 270-409 235-394 (419)
98 cd04946 GT1_AmsK_like This fam 98.4 9.6E-06 2.1E-10 81.7 16.8 152 270-427 228-397 (407)
99 TIGR00236 wecB UDP-N-acetylglu 98.4 6.5E-06 1.4E-10 81.7 15.1 152 271-438 197-363 (365)
100 PLN02501 digalactosyldiacylgly 98.3 5E-05 1.1E-09 78.4 19.6 125 276-412 550-686 (794)
101 cd04949 GT1_gtfA_like This fam 98.3 7.8E-06 1.7E-10 81.2 13.7 144 270-421 202-359 (372)
102 cd03813 GT1_like_3 This family 98.3 2.4E-05 5.2E-10 80.5 16.8 144 270-422 291-457 (475)
103 PRK01021 lpxB lipid-A-disaccha 98.3 0.00017 3.7E-09 73.9 22.2 195 221-422 360-590 (608)
104 cd03804 GT1_wbaZ_like This fam 98.3 3.7E-06 7.9E-11 82.9 9.9 134 273-420 196-340 (351)
105 PF02684 LpxB: Lipid-A-disacch 98.3 1.5E-05 3.2E-10 78.0 13.8 189 221-416 132-349 (373)
106 COG5017 Uncharacterized conser 98.3 2.2E-05 4.8E-10 63.0 12.1 112 274-390 2-124 (161)
107 PLN02939 transferase, transfer 98.2 0.00093 2E-08 72.0 27.2 138 272-416 779-944 (977)
108 PLN02949 transferase, transfer 98.2 0.0013 2.9E-08 67.0 27.4 154 271-435 267-450 (463)
109 PF03033 Glyco_transf_28: Glyc 98.2 2.9E-07 6.4E-12 77.7 0.7 52 32-84 1-54 (139)
110 TIGR03568 NeuC_NnaA UDP-N-acet 98.2 0.00019 4E-09 71.1 20.4 128 271-413 201-344 (365)
111 PRK10125 putative glycosyl tra 98.2 0.0015 3.3E-08 65.6 26.8 117 272-402 241-366 (405)
112 PLN02316 synthase/transferase 98.2 0.0016 3.4E-08 71.4 28.0 162 271-440 839-1031(1036)
113 COG0763 LpxB Lipid A disacchar 98.1 3.9E-05 8.5E-10 73.5 13.2 211 221-440 135-379 (381)
114 TIGR02918 accessory Sec system 98.1 6.9E-05 1.5E-09 77.1 15.7 160 270-437 317-495 (500)
115 COG0381 WecB UDP-N-acetylgluco 98.1 0.00039 8.5E-09 66.9 19.4 160 270-441 203-373 (383)
116 PF13844 Glyco_transf_41: Glyc 98.1 9.7E-05 2.1E-09 73.8 15.6 170 265-441 278-465 (468)
117 PRK14089 ipid-A-disaccharide s 98.1 1.8E-05 3.9E-10 76.9 9.7 179 242-438 144-346 (347)
118 cd04950 GT1_like_1 Glycosyltra 98.0 0.00022 4.7E-09 71.0 17.0 121 271-408 204-341 (373)
119 cd01635 Glycosyltransferase_GT 97.9 0.00055 1.2E-08 62.2 16.4 91 277-369 109-215 (229)
120 PRK15490 Vi polysaccharide bio 97.9 0.00032 7E-09 71.5 14.7 121 272-401 398-532 (578)
121 PF13692 Glyco_trans_1_4: Glyc 97.8 0.0001 2.2E-09 61.6 7.7 124 273-407 3-135 (135)
122 PHA01633 putative glycosyl tra 97.7 0.00083 1.8E-08 65.0 13.6 131 270-406 146-306 (335)
123 COG1817 Uncharacterized protei 97.7 0.0062 1.3E-07 56.7 18.3 165 260-443 170-343 (346)
124 PRK09814 beta-1,6-galactofuran 97.6 0.0012 2.6E-08 64.6 14.0 114 303-424 189-319 (333)
125 cd03791 GT1_Glycogen_synthase_ 97.5 0.00084 1.8E-08 69.2 11.9 160 270-436 294-471 (476)
126 PHA01630 putative group 1 glyc 97.5 0.0058 1.3E-07 59.6 16.6 162 271-441 141-329 (331)
127 PF02350 Epimerase_2: UDP-N-ac 97.5 0.001 2.2E-08 65.2 11.1 181 242-436 145-345 (346)
128 TIGR02095 glgA glycogen/starch 97.4 0.0016 3.5E-08 67.0 12.7 136 271-417 290-451 (473)
129 PRK14098 glycogen synthase; Pr 97.4 0.0027 5.8E-08 65.4 13.1 137 271-414 306-461 (489)
130 PF13524 Glyco_trans_1_2: Glyc 97.1 0.004 8.7E-08 48.1 8.8 84 346-437 9-92 (92)
131 PRK14099 glycogen synthase; Pr 97.0 0.012 2.5E-07 60.7 13.9 143 272-419 295-459 (485)
132 TIGR03713 acc_sec_asp1 accesso 96.9 0.014 3.1E-07 60.3 13.1 101 321-435 409-515 (519)
133 COG0859 RfaF ADP-heptose:LPS h 96.0 0.39 8.4E-06 46.9 16.5 91 271-365 175-276 (334)
134 TIGR02400 trehalose_OtsA alpha 95.9 0.71 1.5E-05 47.1 18.2 142 270-423 257-440 (456)
135 PF06722 DUF1205: Protein of u 95.8 0.024 5.3E-07 44.0 5.7 77 243-324 15-97 (97)
136 cd03788 GT1_TPS Trehalose-6-Ph 95.8 0.24 5.1E-06 50.8 14.5 127 270-408 262-428 (460)
137 TIGR02919 accessory Sec system 95.8 0.11 2.3E-06 52.6 11.5 124 289-423 291-427 (438)
138 KOG1111|consensus 95.7 2 4.4E-05 41.3 19.0 91 273-367 196-303 (426)
139 KOG4626|consensus 95.6 0.15 3.3E-06 52.0 11.7 162 270-440 757-938 (966)
140 COG3914 Spy Predicted O-linked 95.6 0.4 8.6E-06 48.8 14.4 130 267-404 425-575 (620)
141 PRK10017 colanic acid biosynth 95.3 0.67 1.5E-05 46.7 15.3 96 333-437 323-420 (426)
142 COG0438 RfaG Glycosyltransfera 94.7 1.5 3.2E-05 41.8 15.9 131 273-416 200-351 (381)
143 PF06258 Mito_fiss_Elm1: Mitoc 94.3 1.1 2.3E-05 43.2 13.3 162 220-388 95-281 (311)
144 PF13477 Glyco_trans_4_2: Glyc 94.2 0.29 6.2E-06 40.7 8.3 48 31-82 1-51 (139)
145 PF06925 MGDG_synth: Monogalac 93.5 0.056 1.2E-06 47.1 2.8 24 43-66 1-25 (169)
146 PRK14501 putative bifunctional 93.2 1.1 2.3E-05 48.9 12.6 142 270-423 263-446 (726)
147 TIGR02193 heptsyl_trn_I lipopo 92.9 0.89 1.9E-05 44.0 10.4 128 270-405 178-319 (319)
148 COG4370 Uncharacterized protei 92.0 1.4 3E-05 41.3 9.5 73 350-424 320-396 (412)
149 COG3660 Predicted nucleoside-d 91.9 5.7 0.00012 36.6 13.0 140 222-365 109-271 (329)
150 COG2894 MinD Septum formation 91.5 0.23 5.1E-06 44.2 3.8 39 29-67 1-40 (272)
151 COG0003 ArsA Predicted ATPase 91.2 1.7 3.8E-05 41.9 9.8 44 29-72 1-44 (322)
152 COG1703 ArgK Putative periplas 90.7 1.6 3.4E-05 41.1 8.6 51 22-73 44-94 (323)
153 TIGR02398 gluc_glyc_Psyn gluco 90.1 18 0.00039 37.2 16.5 155 270-440 283-477 (487)
154 cd03793 GT1_Glycogen_synthase_ 89.7 2.3 5E-05 44.2 9.7 80 331-414 468-558 (590)
155 PLN03063 alpha,alpha-trehalose 89.5 17 0.00037 40.0 16.8 142 270-423 277-461 (797)
156 PF01975 SurE: Survival protei 89.3 1.5 3.2E-05 39.1 7.1 40 30-71 1-40 (196)
157 COG1618 Predicted nucleotide k 88.8 3.1 6.7E-05 35.5 8.2 55 28-83 4-60 (179)
158 KOG0853|consensus 87.5 0.37 8.1E-06 48.7 2.3 114 288-420 327-446 (495)
159 PF05159 Capsule_synth: Capsul 87.3 2.8 6E-05 39.5 8.1 75 289-366 140-225 (269)
160 PF04464 Glyphos_transf: CDP-G 86.9 3.8 8.3E-05 40.5 9.2 136 293-437 220-368 (369)
161 PRK10964 ADP-heptose:LPS hepto 86.4 4.5 9.8E-05 39.1 9.3 128 271-406 178-321 (322)
162 PF08660 Alg14: Oligosaccharid 86.2 1.7 3.7E-05 37.8 5.5 28 39-66 6-34 (170)
163 PF07429 Glyco_transf_56: 4-al 86.1 24 0.00052 34.2 13.3 126 271-406 183-332 (360)
164 PRK02155 ppnK NAD(+)/NADH kina 86.0 6.5 0.00014 37.5 9.8 97 289-408 20-120 (291)
165 cd03789 GT1_LPS_heptosyltransf 85.5 3.4 7.5E-05 39.0 7.8 91 271-365 121-223 (279)
166 PF12000 Glyco_trans_4_3: Gkyc 85.2 5.8 0.00013 34.4 8.2 28 56-83 1-28 (171)
167 cd00550 ArsA_ATPase Oxyanion-t 84.9 2.4 5.1E-05 39.6 6.2 39 31-69 1-39 (254)
168 PF01075 Glyco_transf_9: Glyco 84.0 3.3 7.2E-05 38.2 6.8 92 270-365 104-208 (247)
169 PRK10422 lipopolysaccharide co 83.9 7.3 0.00016 38.3 9.5 92 270-365 182-287 (352)
170 TIGR02195 heptsyl_trn_II lipop 83.6 5.9 0.00013 38.6 8.7 92 270-365 173-276 (334)
171 PRK04885 ppnK inorganic polyph 81.0 3.2 7E-05 38.9 5.5 54 339-408 35-94 (265)
172 PRK14077 pnk inorganic polypho 80.8 13 0.00028 35.3 9.5 95 288-408 23-121 (287)
173 PRK03372 ppnK inorganic polyph 79.8 16 0.00034 35.1 9.7 99 289-408 20-129 (306)
174 COG4394 Uncharacterized protei 79.8 39 0.00084 31.7 11.6 90 259-367 192-286 (370)
175 PF13579 Glyco_trans_4_4: Glyc 79.1 2.3 5.1E-05 35.5 3.6 40 43-82 3-46 (160)
176 PRK01231 ppnK inorganic polyph 77.6 22 0.00048 34.0 10.0 98 288-408 18-119 (295)
177 TIGR00725 conserved hypothetic 77.5 45 0.00097 28.5 12.1 97 260-368 21-124 (159)
178 TIGR02201 heptsyl_trn_III lipo 77.0 19 0.0004 35.2 9.8 92 270-365 180-285 (344)
179 PRK10916 ADP-heptose:LPS hepto 76.8 12 0.00026 36.6 8.4 92 270-365 179-286 (348)
180 PRK03378 ppnK inorganic polyph 76.6 22 0.00047 34.0 9.6 97 289-408 20-120 (292)
181 TIGR00730 conserved hypothetic 76.3 28 0.00061 30.4 9.6 112 261-383 23-153 (178)
182 PRK02649 ppnK inorganic polyph 76.3 5.3 0.00012 38.3 5.4 101 289-408 16-125 (305)
183 PF13439 Glyco_transf_4: Glyco 76.0 3.9 8.5E-05 34.8 4.2 35 39-73 10-44 (177)
184 PF04127 DFP: DNA / pantothena 75.8 5 0.00011 35.4 4.8 44 37-82 24-67 (185)
185 PRK09620 hypothetical protein; 74.3 22 0.00048 32.5 8.8 21 47-67 32-52 (229)
186 PRK02797 4-alpha-L-fucosyltran 74.2 62 0.0013 31.0 11.6 123 272-404 145-291 (322)
187 COG0297 GlgA Glycogen synthase 73.9 1.1E+02 0.0024 31.5 14.4 127 271-405 293-440 (487)
188 PRK01911 ppnK inorganic polyph 72.6 8.4 0.00018 36.7 5.7 99 289-408 15-121 (292)
189 PRK13982 bifunctional SbtC-lik 72.3 7.7 0.00017 39.5 5.7 54 28-82 255-320 (475)
190 PRK04539 ppnK inorganic polyph 71.3 8 0.00017 36.9 5.3 98 289-408 20-125 (296)
191 PRK05986 cob(I)alamin adenolsy 71.2 37 0.0008 30.0 9.0 39 28-67 21-59 (191)
192 PLN03064 alpha,alpha-trehalose 70.8 1.4E+02 0.0031 33.5 15.2 143 270-423 361-545 (934)
193 COG0496 SurE Predicted acid ph 69.7 18 0.00039 33.4 6.9 40 30-72 1-40 (252)
194 PRK03501 ppnK inorganic polyph 69.6 9.8 0.00021 35.6 5.4 55 339-408 39-98 (264)
195 cd02067 B12-binding B12 bindin 68.7 6.9 0.00015 31.5 3.8 35 31-66 1-35 (119)
196 PRK01185 ppnK inorganic polyph 68.5 11 0.00024 35.4 5.6 54 339-408 52-106 (271)
197 PRK05920 aromatic acid decarbo 68.2 6.2 0.00013 35.4 3.6 38 28-67 2-39 (204)
198 PRK14075 pnk inorganic polypho 66.8 14 0.00031 34.4 5.9 84 288-408 11-95 (256)
199 PRK02231 ppnK inorganic polyph 66.6 9.1 0.0002 36.0 4.5 55 339-409 42-100 (272)
200 COG1484 DnaC DNA replication p 66.6 18 0.00039 33.8 6.5 38 28-66 104-141 (254)
201 PF02374 ArsA_ATPase: Anion-tr 66.4 10 0.00022 36.4 5.0 40 31-70 2-41 (305)
202 PRK08305 spoVFB dipicolinate s 66.4 7.1 0.00015 34.7 3.6 37 29-67 5-42 (196)
203 COG2910 Putative NADH-flavin r 64.6 13 0.00028 32.6 4.6 46 30-80 1-47 (211)
204 PF08357 SEFIR: SEFIR domain; 64.2 7.8 0.00017 32.7 3.4 34 30-63 1-35 (150)
205 COG4088 Predicted nucleotide k 63.1 8.5 0.00018 34.3 3.3 35 31-66 3-37 (261)
206 PF02441 Flavoprotein: Flavopr 63.0 10 0.00022 31.2 3.7 35 30-66 1-35 (129)
207 PF00731 AIRC: AIR carboxylase 62.4 96 0.0021 26.2 11.0 137 272-423 1-148 (150)
208 COG4635 HemG Flavodoxin [Energ 62.4 12 0.00027 31.6 4.0 52 30-81 1-53 (175)
209 KOG0780|consensus 62.0 14 0.00031 36.1 4.9 43 29-71 100-142 (483)
210 PF09314 DUF1972: Domain of un 61.7 27 0.00058 30.8 6.2 53 29-82 1-62 (185)
211 PF12146 Hydrolase_4: Putative 61.4 17 0.00036 27.0 4.3 36 30-66 16-51 (79)
212 PLN02935 Bifunctional NADH kin 60.9 17 0.00037 37.1 5.5 100 289-408 209-319 (508)
213 TIGR02095 glgA glycogen/starch 60.2 11 0.00024 38.7 4.3 26 41-66 17-42 (473)
214 PRK03708 ppnK inorganic polyph 60.1 17 0.00036 34.4 5.1 96 288-408 14-113 (277)
215 PRK13185 chlL protochlorophyll 59.9 18 0.0004 33.8 5.4 42 29-70 1-42 (270)
216 PRK14076 pnk inorganic polypho 59.6 17 0.00037 38.3 5.6 54 339-408 348-405 (569)
217 PLN02929 NADH kinase 59.3 23 0.00051 33.7 5.9 98 288-408 32-138 (301)
218 PRK09004 FMN-binding protein M 59.0 14 0.00029 31.2 3.9 38 29-66 1-38 (146)
219 cd03791 GT1_Glycogen_synthase_ 58.6 13 0.00027 38.2 4.4 25 42-66 17-41 (476)
220 PRK07313 phosphopantothenoylcy 57.0 13 0.00028 32.7 3.5 37 29-67 1-37 (182)
221 KOG3062|consensus 56.9 24 0.00051 32.0 5.0 37 29-66 1-38 (281)
222 PRK02261 methylaspartate mutas 56.5 18 0.00038 30.2 4.1 38 28-66 2-39 (137)
223 PRK14098 glycogen synthase; Pr 56.0 17 0.00036 37.7 4.7 40 27-66 3-47 (489)
224 PRK04761 ppnK inorganic polyph 55.5 30 0.00066 32.0 5.8 54 339-407 25-82 (246)
225 PF15024 Glyco_transf_18: Glyc 55.2 39 0.00084 35.0 7.0 88 317-408 318-431 (559)
226 PRK08105 flavodoxin; Provision 55.2 16 0.00036 30.8 3.8 38 29-66 1-38 (149)
227 PRK06029 3-octaprenyl-4-hydrox 55.2 12 0.00027 32.9 3.1 37 29-67 1-38 (185)
228 PF02310 B12-binding: B12 bind 54.7 17 0.00038 29.0 3.8 35 31-66 2-36 (121)
229 PRK06756 flavodoxin; Provision 54.7 20 0.00043 30.1 4.3 37 29-66 1-38 (148)
230 PF00448 SRP54: SRP54-type pro 52.7 30 0.00065 30.8 5.2 42 30-71 1-42 (196)
231 PRK12446 undecaprenyldiphospho 52.6 1.2E+02 0.0025 29.9 9.8 32 334-365 86-120 (352)
232 PF07015 VirC1: VirC1 protein; 52.5 38 0.00082 30.9 5.8 43 29-71 1-43 (231)
233 PRK05568 flavodoxin; Provision 52.5 25 0.00054 29.1 4.5 37 29-66 1-38 (142)
234 cd07038 TPP_PYR_PDC_IPDC_like 52.4 1E+02 0.0023 26.3 8.4 28 340-367 60-93 (162)
235 PRK00207 sulfur transfer compl 52.3 29 0.00063 28.5 4.7 36 31-66 2-40 (128)
236 TIGR01007 eps_fam capsular exo 51.9 36 0.00077 30.3 5.7 43 27-69 15-57 (204)
237 PRK03767 NAD(P)H:quinone oxido 51.7 27 0.00058 31.1 4.8 37 29-66 1-39 (200)
238 PRK05647 purN phosphoribosylgl 51.5 57 0.0012 29.1 6.8 35 29-67 1-37 (200)
239 PLN00016 RNA-binding protein; 51.4 16 0.00036 36.2 3.7 40 27-67 50-89 (378)
240 PF10093 DUF2331: Uncharacteri 50.6 2.6E+02 0.0057 27.6 21.1 43 322-367 245-292 (374)
241 COG0391 Uncharacterized conser 50.4 1.8E+02 0.004 28.1 10.3 135 242-403 167-303 (323)
242 PLN02470 acetolactate synthase 50.4 52 0.0011 34.9 7.5 88 277-366 2-109 (585)
243 COG0716 FldA Flavodoxins [Ener 50.1 23 0.00049 30.0 3.9 38 29-66 1-38 (151)
244 COG0826 Collagenase and relate 49.3 2.7E+02 0.0058 27.4 12.4 128 270-404 26-159 (347)
245 PRK10422 lipopolysaccharide co 48.6 55 0.0012 32.1 6.9 40 28-68 4-45 (352)
246 PF02951 GSH-S_N: Prokaryotic 48.2 20 0.00042 29.1 3.0 22 45-66 18-39 (119)
247 PRK09739 hypothetical protein; 48.2 40 0.00086 30.0 5.3 40 28-67 2-43 (199)
248 TIGR02113 coaC_strep phosphopa 47.9 21 0.00046 31.1 3.4 36 30-67 1-36 (177)
249 PF08323 Glyco_transf_5: Starc 47.8 20 0.00043 33.2 3.4 26 41-66 16-41 (245)
250 cd02070 corrinoid_protein_B12- 47.4 38 0.00082 30.2 5.1 38 28-66 81-118 (201)
251 PLN02727 NAD kinase 47.3 37 0.0008 37.4 5.6 55 338-408 742-800 (986)
252 PF06564 YhjQ: YhjQ protein; 47.3 36 0.00078 31.4 4.9 40 29-68 1-40 (243)
253 cd07039 TPP_PYR_POX Pyrimidine 47.1 1.8E+02 0.004 24.8 11.5 29 338-366 62-96 (164)
254 PRK13768 GTPase; Provisional 46.5 35 0.00077 31.7 4.9 41 29-69 1-41 (253)
255 smart00096 UTG Uteroglobin. 46.5 90 0.002 22.5 5.7 50 393-442 17-66 (69)
256 COG0223 Fmt Methionyl-tRNA for 46.4 70 0.0015 30.6 6.8 36 29-70 1-36 (307)
257 PF01210 NAD_Gly3P_dh_N: NAD-d 46.2 10 0.00022 32.4 1.1 23 46-68 10-32 (157)
258 PRK05569 flavodoxin; Provision 45.9 34 0.00074 28.3 4.3 37 29-66 1-38 (141)
259 COG2185 Sbm Methylmalonyl-CoA 45.6 30 0.00066 28.9 3.7 39 27-66 10-48 (143)
260 PRK02645 ppnK inorganic polyph 45.0 1E+02 0.0022 29.6 7.9 68 289-367 18-89 (305)
261 PRK13886 conjugal transfer pro 45.0 39 0.00086 31.1 4.8 42 29-70 1-43 (241)
262 PRK09590 celB cellobiose phosp 45.0 34 0.00075 26.9 3.8 54 29-83 1-58 (104)
263 COG1763 MobB Molybdopterin-gua 44.9 41 0.0009 28.8 4.6 38 29-66 1-38 (161)
264 PRK06703 flavodoxin; Provision 44.5 34 0.00074 28.8 4.1 37 29-66 1-38 (151)
265 COG0801 FolK 7,8-dihydro-6-hyd 44.4 45 0.00098 28.5 4.7 35 272-309 2-36 (160)
266 cd01452 VWA_26S_proteasome_sub 44.1 64 0.0014 28.5 5.8 38 29-66 107-144 (187)
267 COG3563 KpsC Capsule polysacch 43.6 3.1E+02 0.0068 28.0 10.8 154 289-465 166-336 (671)
268 PRK11780 isoprenoid biosynthes 42.5 45 0.00099 30.2 4.8 40 29-68 1-43 (217)
269 cd02034 CooC The accessory pro 42.2 56 0.0012 26.2 4.8 37 31-68 1-37 (116)
270 TIGR00064 ftsY signal recognit 42.1 57 0.0012 30.7 5.6 41 29-69 71-111 (272)
271 COG1553 DsrE Uncharacterized c 42.1 60 0.0013 26.3 4.7 36 31-66 2-40 (126)
272 TIGR02852 spore_dpaB dipicolin 41.1 28 0.0006 30.7 3.1 36 31-67 2-37 (187)
273 PRK00170 azoreductase; Reviewe 41.0 51 0.0011 29.2 4.9 38 29-66 1-43 (201)
274 PF05693 Glycogen_syn: Glycoge 40.8 39 0.00085 35.4 4.5 71 350-421 484-566 (633)
275 PRK00561 ppnK inorganic polyph 40.7 61 0.0013 30.3 5.4 28 339-366 33-64 (259)
276 PRK06988 putative formyltransf 40.3 71 0.0015 30.8 6.0 34 29-68 2-35 (312)
277 KOG1387|consensus 39.9 3.7E+02 0.0081 26.3 23.8 101 261-364 257-385 (465)
278 COG2085 Predicted dinucleotide 39.9 42 0.0009 30.1 4.0 33 29-67 1-33 (211)
279 TIGR00460 fmt methionyl-tRNA f 39.6 56 0.0012 31.5 5.3 31 31-67 2-32 (313)
280 PRK06849 hypothetical protein; 39.6 44 0.00095 33.3 4.7 35 28-67 3-37 (389)
281 COG2327 WcaK Polysaccharide py 39.5 1.9E+02 0.0041 28.8 8.7 86 321-413 266-357 (385)
282 TIGR00661 MJ1255 conserved hyp 39.4 1.3E+02 0.0027 29.0 7.8 33 334-366 88-120 (321)
283 cd00561 CobA_CobO_BtuR ATP:cor 39.0 2.5E+02 0.0054 24.0 10.7 36 30-66 3-38 (159)
284 PRK14099 glycogen synthase; Pr 38.8 45 0.00098 34.4 4.7 38 29-66 3-45 (485)
285 PRK07308 flavodoxin; Validated 38.6 48 0.001 27.7 4.1 37 29-66 1-38 (146)
286 TIGR03012 sulf_tusD_dsrE sulfu 38.3 65 0.0014 26.4 4.7 36 31-66 1-39 (127)
287 TIGR01921 DAP-DH diaminopimela 38.2 1.3E+02 0.0029 29.1 7.4 86 272-369 5-95 (324)
288 PRK06732 phosphopantothenate-- 38.0 41 0.00089 30.8 3.9 28 37-66 21-48 (229)
289 PRK06719 precorrin-2 dehydroge 38.0 46 0.001 28.4 3.9 35 27-67 11-45 (157)
290 TIGR02638 lactal_redase lactal 37.6 82 0.0018 31.3 6.2 85 272-368 30-139 (379)
291 TIGR02700 flavo_MJ0208 archaeo 37.4 41 0.00089 30.9 3.8 36 31-68 1-39 (234)
292 KOG3339|consensus 36.8 63 0.0014 28.2 4.4 34 31-66 40-73 (211)
293 PRK13556 azoreductase; Provisi 36.3 53 0.0012 29.4 4.3 39 29-67 1-45 (208)
294 TIGR02370 pyl_corrinoid methyl 35.9 50 0.0011 29.4 4.0 39 28-67 83-121 (197)
295 PRK10818 cell division inhibit 35.9 61 0.0013 30.3 4.8 41 29-69 1-42 (270)
296 cd02071 MM_CoA_mut_B12_BD meth 35.8 53 0.0012 26.5 3.8 35 31-66 1-35 (122)
297 PF12038 DUF3524: Domain of un 35.8 57 0.0012 28.0 4.0 34 30-66 1-34 (168)
298 PRK13236 nitrogenase reductase 35.7 78 0.0017 30.2 5.5 44 28-72 5-48 (296)
299 PRK00211 sulfur relay protein 35.5 71 0.0015 25.8 4.4 38 29-66 1-40 (119)
300 PRK10037 cell division protein 35.5 66 0.0014 29.7 4.9 41 29-69 1-41 (250)
301 PF13460 NAD_binding_10: NADH( 35.4 68 0.0015 27.6 4.8 43 39-83 5-48 (183)
302 cd02040 NifH NifH gene encodes 35.1 84 0.0018 29.2 5.6 42 29-71 1-42 (270)
303 PF01695 IstB_IS21: IstB-like 34.9 62 0.0013 28.2 4.4 37 29-66 47-83 (178)
304 PRK06835 DNA replication prote 34.9 64 0.0014 31.4 4.8 36 30-66 184-219 (329)
305 PRK11579 putative oxidoreducta 34.9 2.5E+02 0.0054 27.4 9.1 122 272-406 6-138 (346)
306 PRK00889 adenylylsulfate kinas 34.8 80 0.0017 27.2 5.1 39 29-67 3-41 (175)
307 CHL00175 minD septum-site dete 34.6 74 0.0016 30.0 5.2 43 27-69 12-55 (281)
308 COG1938 Archaeal enzymes of AT 34.3 3.8E+02 0.0082 24.8 12.3 76 289-365 93-175 (244)
309 PRK06851 hypothetical protein; 34.1 1E+02 0.0023 30.4 6.1 40 27-66 27-66 (367)
310 COG4097 Predicted ferric reduc 33.6 1.4E+02 0.003 29.4 6.5 122 218-361 292-421 (438)
311 COG1255 Uncharacterized protei 33.6 78 0.0017 25.4 4.1 45 27-79 12-56 (129)
312 PRK13230 nitrogenase reductase 33.5 94 0.002 29.2 5.7 44 29-73 1-44 (279)
313 cd02037 MRP-like MRP (Multiple 33.4 95 0.0021 26.5 5.3 39 32-70 2-40 (169)
314 cd07035 TPP_PYR_POX_like Pyrim 33.4 2.3E+02 0.0051 23.6 7.7 29 338-366 58-92 (155)
315 PRK13234 nifH nitrogenase redu 33.3 93 0.002 29.6 5.6 45 27-72 2-46 (295)
316 TIGR00853 pts-lac PTS system, 33.3 73 0.0016 24.5 4.0 38 28-66 2-39 (95)
317 cd02033 BchX Chlorophyllide re 33.1 94 0.002 30.2 5.6 43 28-70 29-71 (329)
318 PF13604 AAA_30: AAA domain; P 32.8 78 0.0017 28.1 4.7 39 28-66 16-54 (196)
319 PF01656 CbiA: CobQ/CobB/MinD/ 32.7 99 0.0022 26.8 5.4 38 32-69 1-38 (195)
320 PRK09271 flavodoxin; Provision 32.6 73 0.0016 27.2 4.3 35 31-66 2-37 (160)
321 PF03853 YjeF_N: YjeF-related 32.4 1.3E+02 0.0029 25.8 6.0 39 26-66 22-60 (169)
322 cd08181 PPD-like 1,3-propanedi 32.3 1.2E+02 0.0026 29.8 6.4 33 335-368 79-133 (357)
323 cd03412 CbiK_N Anaerobic cobal 32.3 90 0.002 25.5 4.6 40 271-313 1-41 (127)
324 COG0062 Uncharacterized conser 32.1 1.1E+02 0.0023 27.4 5.3 36 29-66 49-84 (203)
325 cd01983 Fer4_NifH The Fer4_Nif 31.9 91 0.002 23.0 4.5 30 36-65 5-34 (99)
326 cd08188 Fe-ADH4 Iron-containin 31.8 1.5E+02 0.0033 29.4 7.0 78 262-350 19-96 (377)
327 COG3414 SgaB Phosphotransferas 31.8 1.9E+02 0.0041 22.2 6.0 52 29-80 1-54 (93)
328 TIGR01755 flav_wrbA NAD(P)H:qu 31.7 79 0.0017 28.1 4.5 35 31-66 2-38 (197)
329 PF06180 CbiK: Cobalt chelatas 31.6 99 0.0021 29.0 5.3 41 271-313 1-42 (262)
330 TIGR03371 cellulose_yhjQ cellu 31.4 82 0.0018 28.8 4.8 41 29-69 1-41 (246)
331 PRK00771 signal recognition pa 31.4 94 0.002 31.6 5.5 41 30-70 95-135 (437)
332 PF13614 AAA_31: AAA domain; P 31.0 93 0.002 25.9 4.8 36 32-67 3-38 (157)
333 PRK10867 signal recognition pa 31.0 92 0.002 31.6 5.3 43 29-71 99-142 (433)
334 PRK15454 ethanol dehydrogenase 30.7 1.4E+02 0.0031 29.8 6.7 68 272-351 50-118 (395)
335 cd02069 methionine_synthase_B1 30.6 69 0.0015 28.9 4.0 38 28-66 87-124 (213)
336 COG1348 NifH Nitrogenase subun 30.6 98 0.0021 28.4 4.7 42 29-71 1-42 (278)
337 PRK05579 bifunctional phosphop 30.5 1.4E+02 0.003 30.0 6.4 22 46-67 216-237 (399)
338 TIGR01425 SRP54_euk signal rec 30.4 90 0.0019 31.6 5.1 41 30-70 100-140 (429)
339 PRK13849 putative crown gall t 30.4 1.1E+02 0.0024 27.9 5.4 43 29-71 1-43 (231)
340 TIGR00732 dprA DNA protecting 30.2 1E+02 0.0022 28.1 5.0 41 347-387 169-211 (220)
341 PRK06276 acetolactate synthase 30.0 2.2E+02 0.0049 30.1 8.4 29 338-366 62-96 (586)
342 PRK14494 putative molybdopteri 29.8 94 0.002 28.4 4.7 36 31-66 2-37 (229)
343 COG4081 Uncharacterized protei 29.7 1.1E+02 0.0023 25.0 4.3 38 29-66 2-40 (148)
344 TIGR02482 PFKA_ATP 6-phosphofr 29.7 1.7E+02 0.0037 28.1 6.6 48 261-314 54-101 (301)
345 cd08193 HVD 5-hydroxyvalerate 29.6 1.6E+02 0.0034 29.2 6.7 96 261-368 16-134 (376)
346 PF01372 Melittin: Melittin; 29.6 7.4 0.00016 21.4 -1.4 18 348-365 1-18 (26)
347 PRK10624 L-1,2-propanediol oxi 29.5 1.4E+02 0.003 29.7 6.3 94 262-368 21-140 (382)
348 TIGR03649 ergot_EASG ergot alk 29.4 97 0.0021 29.1 5.1 35 31-70 1-35 (285)
349 cd02035 ArsA ArsA ATPase funct 29.4 90 0.002 28.1 4.6 38 33-70 2-39 (217)
350 PF01513 NAD_kinase: ATP-NAD k 29.4 52 0.0011 31.2 3.1 53 338-406 75-131 (285)
351 CHL00072 chlL photochlorophyll 29.2 1.2E+02 0.0027 28.8 5.7 42 31-73 2-43 (290)
352 PRK13233 nifH nitrogenase redu 28.9 94 0.002 29.1 4.8 42 29-70 1-43 (275)
353 PRK12726 flagellar biosynthesi 28.8 1.3E+02 0.0028 30.0 5.7 44 28-71 204-247 (407)
354 PF10933 DUF2827: Protein of u 28.8 3.8E+02 0.0082 26.3 8.7 93 322-430 254-355 (364)
355 COG1440 CelA Phosphotransferas 28.7 1.1E+02 0.0023 24.0 4.0 58 29-87 1-60 (102)
356 TIGR01205 D_ala_D_alaTIGR D-al 28.6 95 0.0021 29.7 4.9 37 31-67 1-40 (315)
357 PF13450 NAD_binding_8: NAD(P) 28.5 70 0.0015 22.7 3.0 20 47-66 8-27 (68)
358 PLN02240 UDP-glucose 4-epimera 28.3 81 0.0018 30.6 4.5 33 29-66 5-37 (352)
359 COG0467 RAD55 RecA-superfamily 28.3 1.2E+02 0.0025 28.2 5.3 41 28-68 21-61 (260)
360 TIGR03499 FlhF flagellar biosy 28.0 1.2E+02 0.0026 28.8 5.3 40 29-68 193-234 (282)
361 COG2210 Peroxiredoxin family p 27.9 1.2E+02 0.0026 25.2 4.4 36 31-66 4-39 (137)
362 PF12500 TRSP: TRSP domain C t 27.9 2E+02 0.0043 24.5 6.0 36 28-66 56-91 (155)
363 PF03308 ArgK: ArgK protein; 27.8 1.5E+02 0.0031 27.8 5.5 45 26-71 26-70 (266)
364 PRK07313 phosphopantothenoylcy 27.8 4.1E+02 0.009 23.2 12.2 50 356-405 108-178 (182)
365 PRK01372 ddl D-alanine--D-alan 27.8 87 0.0019 29.8 4.5 38 30-67 5-45 (304)
366 cd02036 MinD Bacterial cell di 27.7 1.2E+02 0.0025 25.9 4.9 37 32-68 2-38 (179)
367 cd03785 GT1_MurG MurG is an N- 27.6 5.4E+02 0.012 24.6 10.2 88 274-366 2-119 (350)
368 PRK05868 hypothetical protein; 27.6 77 0.0017 31.3 4.2 32 29-66 1-32 (372)
369 PF04244 DPRP: Deoxyribodipyri 27.5 62 0.0013 29.5 3.1 25 43-67 47-71 (224)
370 PRK07952 DNA replication prote 27.1 1.1E+02 0.0024 28.3 4.7 34 32-65 101-134 (244)
371 PRK14974 cell division protein 27.1 1.2E+02 0.0026 29.6 5.2 40 30-69 140-179 (336)
372 PRK12825 fabG 3-ketoacyl-(acyl 27.1 99 0.0022 27.9 4.6 34 28-66 5-38 (249)
373 PRK08527 acetolactate synthase 27.0 3.7E+02 0.0079 28.4 9.3 29 338-366 65-99 (563)
374 TIGR00639 PurN phosphoribosylg 26.9 3.1E+02 0.0068 24.2 7.4 34 30-67 1-36 (190)
375 COG0143 MetG Methionyl-tRNA sy 26.9 1E+02 0.0022 32.3 4.9 39 28-66 3-50 (558)
376 PRK10499 PTS system N,N'-diace 26.8 1.9E+02 0.0041 22.7 5.4 54 29-83 3-58 (106)
377 TIGR00421 ubiX_pad polyprenyl 26.7 66 0.0014 28.2 3.1 35 31-67 1-35 (181)
378 cd03115 SRP The signal recogni 26.6 1.5E+02 0.0032 25.4 5.4 38 32-69 2-39 (173)
379 PRK06179 short chain dehydroge 26.5 1.4E+02 0.0031 27.5 5.6 27 39-67 11-37 (270)
380 TIGR00521 coaBC_dfp phosphopan 26.4 68 0.0015 32.0 3.5 36 29-66 3-38 (390)
381 cd08194 Fe-ADH6 Iron-containin 26.3 2.2E+02 0.0047 28.2 7.1 84 271-368 24-131 (375)
382 TIGR03029 EpsG chain length de 26.3 1.7E+02 0.0037 27.3 6.1 41 28-68 101-142 (274)
383 TIGR00036 dapB dihydrodipicoli 26.2 4.8E+02 0.01 24.3 9.0 91 295-389 17-125 (266)
384 COG2874 FlaH Predicted ATPases 26.2 89 0.0019 28.3 3.7 32 36-67 34-65 (235)
385 COG2120 Uncharacterized protei 26.1 1E+02 0.0022 28.3 4.4 40 27-67 8-47 (237)
386 TIGR02094 more_P_ylases alpha- 26.0 8.3E+02 0.018 26.1 13.7 113 271-405 423-554 (601)
387 PLN00141 Tic62-NAD(P)-related 26.0 1.1E+02 0.0025 28.0 4.8 35 27-66 15-49 (251)
388 PRK12377 putative replication 26.0 1.1E+02 0.0024 28.4 4.5 35 31-66 103-137 (248)
389 PF08433 KTI12: Chromatin asso 26.0 93 0.002 29.3 4.1 37 29-66 1-37 (270)
390 PLN03050 pyridoxine (pyridoxam 25.7 1E+02 0.0022 28.5 4.3 34 30-65 61-94 (246)
391 PRK10310 PTS system galactitol 25.7 1.2E+02 0.0026 23.3 4.0 35 31-66 4-39 (94)
392 COG2099 CobK Precorrin-6x redu 25.6 4.1E+02 0.0089 24.7 7.9 92 260-365 118-228 (257)
393 PRK11205 tbpA thiamine transpo 25.6 1E+02 0.0022 29.8 4.5 56 9-65 1-59 (330)
394 PRK00652 lpxK tetraacyldisacch 25.6 1.1E+02 0.0024 29.6 4.7 35 32-66 51-87 (325)
395 COG0163 UbiX 3-polyprenyl-4-hy 25.6 1.2E+02 0.0027 26.5 4.4 36 29-66 2-37 (191)
396 PRK05579 bifunctional phosphop 25.6 74 0.0016 31.9 3.6 37 28-66 5-41 (399)
397 PRK08322 acetolactate synthase 25.5 2.9E+02 0.0064 28.9 8.3 29 338-366 62-96 (547)
398 TIGR00173 menD 2-succinyl-5-en 25.5 4.5E+02 0.0099 26.5 9.4 27 339-365 63-95 (432)
399 PF02635 DrsE: DsrE/DsrF-like 25.5 1.4E+02 0.0031 23.3 4.8 36 31-66 2-42 (122)
400 PRK06718 precorrin-2 dehydroge 25.5 1E+02 0.0022 27.6 4.1 33 28-66 9-41 (202)
401 TIGR00147 lipid kinase, YegS/R 25.4 2.6E+02 0.0057 26.4 7.3 68 289-367 18-91 (293)
402 PRK06180 short chain dehydroge 25.3 1.1E+02 0.0024 28.5 4.6 32 30-66 5-36 (277)
403 COG2109 BtuR ATP:corrinoid ade 25.3 4.8E+02 0.01 23.1 8.6 34 32-66 31-64 (198)
404 TIGR02699 archaeo_AfpA archaeo 25.3 84 0.0018 27.4 3.4 31 37-67 5-37 (174)
405 TIGR00118 acolac_lg acetolacta 25.2 3.7E+02 0.008 28.3 8.9 29 338-366 63-97 (558)
406 PRK07525 sulfoacetaldehyde ace 25.1 3.2E+02 0.0069 29.0 8.5 76 290-366 7-101 (588)
407 PF06506 PrpR_N: Propionate ca 25.1 35 0.00077 29.7 1.1 40 336-376 31-70 (176)
408 PF05225 HTH_psq: helix-turn-h 25.0 1.2E+02 0.0025 19.7 3.2 24 393-416 1-25 (45)
409 PF02525 Flavodoxin_2: Flavodo 25.0 1.1E+02 0.0024 27.0 4.3 38 30-67 1-42 (199)
410 PLN02662 cinnamyl-alcohol dehy 24.9 93 0.002 29.7 4.1 34 29-67 4-37 (322)
411 cd02032 Bchl_like This family 24.8 1.5E+02 0.0032 27.6 5.3 38 31-69 2-39 (267)
412 TIGR00345 arsA arsenite-activa 24.8 2.1E+02 0.0046 27.0 6.4 23 48-70 3-25 (284)
413 TIGR00708 cobA cob(I)alamin ad 24.8 4.7E+02 0.01 22.8 10.6 36 30-66 6-41 (173)
414 PRK03094 hypothetical protein; 24.8 67 0.0015 23.9 2.3 19 48-66 11-29 (80)
415 COG0451 WcaG Nucleoside-diphos 24.7 1E+02 0.0022 29.1 4.4 32 32-68 3-34 (314)
416 TIGR01133 murG undecaprenyldip 24.7 5.7E+02 0.012 24.4 9.8 86 274-364 3-118 (348)
417 PF02481 DNA_processg_A: DNA r 24.7 1.1E+02 0.0023 27.7 4.1 40 347-387 169-210 (212)
418 PF02302 PTS_IIB: PTS system, 24.6 93 0.002 23.2 3.3 51 31-82 1-54 (90)
419 COG0771 MurD UDP-N-acetylmuram 24.5 91 0.002 31.7 3.9 32 29-66 7-38 (448)
420 TIGR03845 sulfopyru_alph sulfo 24.5 4.2E+02 0.0092 22.5 7.6 28 339-366 59-91 (157)
421 KOG3332|consensus 24.3 2.2E+02 0.0047 25.8 5.7 39 29-68 37-75 (247)
422 PRK01355 azoreductase; Reviewe 24.2 1.3E+02 0.0029 26.6 4.7 39 29-67 1-45 (199)
423 TIGR00959 ffh signal recogniti 24.1 1.6E+02 0.0034 29.9 5.5 42 30-71 99-141 (428)
424 PRK08939 primosomal protein Dn 24.1 1.2E+02 0.0026 29.2 4.5 36 31-66 157-192 (306)
425 PRK13235 nifH nitrogenase redu 24.0 1.7E+02 0.0038 27.3 5.7 43 29-72 1-43 (274)
426 PRK09444 pntB pyridine nucleot 24.0 1.9E+02 0.0041 29.3 5.9 38 28-68 305-347 (462)
427 PF07530 PRE_C2HC: Associated 24.0 1.9E+02 0.0042 20.7 4.5 37 48-84 2-40 (68)
428 cd02038 FleN-like FleN is a me 23.8 2.9E+02 0.0064 22.6 6.4 38 33-70 3-40 (139)
429 PRK11889 flhF flagellar biosyn 23.7 1.5E+02 0.0033 29.7 5.2 40 31-70 242-281 (436)
430 TIGR00176 mobB molybdopterin-g 23.7 1.4E+02 0.0029 25.4 4.4 35 33-67 2-36 (155)
431 PRK10416 signal recognition pa 23.7 1.7E+02 0.0037 28.3 5.6 42 29-70 113-154 (318)
432 cd07037 TPP_PYR_MenD Pyrimidin 23.7 1E+02 0.0022 26.5 3.6 30 338-367 59-94 (162)
433 PF03720 UDPG_MGDP_dh_C: UDP-g 23.6 89 0.0019 24.5 3.0 28 40-67 10-39 (106)
434 PRK13869 plasmid-partitioning 23.6 1.5E+02 0.0033 29.8 5.4 41 30-70 122-162 (405)
435 PRK13057 putative lipid kinase 23.6 84 0.0018 29.8 3.4 66 290-367 13-82 (287)
436 PRK12409 D-amino acid dehydrog 23.3 65 0.0014 32.2 2.8 32 29-66 1-32 (410)
437 PRK11104 hemG protoporphyrinog 23.3 1.1E+02 0.0025 26.5 3.9 34 31-66 2-36 (177)
438 PRK10916 ADP-heptose:LPS hepto 23.3 1.1E+02 0.0025 29.7 4.4 38 30-68 1-40 (348)
439 TIGR03018 pepcterm_TyrKin exop 23.3 1.7E+02 0.0037 26.0 5.3 43 28-70 33-77 (207)
440 TIGR00521 coaBC_dfp phosphopan 23.3 1.7E+02 0.0038 29.2 5.6 22 46-67 213-234 (390)
441 TIGR01501 MthylAspMutase methy 23.2 1.2E+02 0.0027 25.0 3.9 36 30-66 2-37 (134)
442 COG0240 GpsA Glycerol-3-phosph 23.2 90 0.002 30.2 3.4 33 29-67 1-33 (329)
443 PRK02122 glucosamine-6-phospha 23.2 1.1E+02 0.0024 32.9 4.4 37 29-66 369-405 (652)
444 PRK06249 2-dehydropantoate 2-r 23.2 1.2E+02 0.0025 29.2 4.4 35 28-68 4-38 (313)
445 cd04299 GT1_Glycogen_Phosphory 23.1 1.1E+03 0.023 26.3 13.0 140 240-403 474-641 (778)
446 cd05125 Mth938_2P1-like Mth938 23.0 1.5E+02 0.0033 23.7 4.3 58 2-66 32-89 (114)
447 CHL00194 ycf39 Ycf39; Provisio 22.9 1.3E+02 0.0028 28.8 4.7 32 31-67 2-33 (317)
448 PRK00005 fmt methionyl-tRNA fo 22.9 2.4E+02 0.0052 27.1 6.4 31 30-66 1-31 (309)
449 TIGR01281 DPOR_bchL light-inde 22.8 1.9E+02 0.0041 26.9 5.6 39 31-70 2-40 (268)
450 KOG0991|consensus 22.8 1.6E+02 0.0035 27.0 4.7 34 22-56 41-74 (333)
451 COG3640 CooC CO dehydrogenase 22.8 1.7E+02 0.0036 26.9 4.8 42 31-73 2-44 (255)
452 TIGR01963 PHB_DH 3-hydroxybuty 22.8 1.3E+02 0.0029 27.3 4.6 32 30-66 2-33 (255)
453 cd08176 LPO Lactadehyde:propan 22.8 2.2E+02 0.0048 28.2 6.4 30 338-368 84-136 (377)
454 PF03698 UPF0180: Uncharacteri 22.8 77 0.0017 23.6 2.3 20 47-66 10-29 (80)
455 TIGR01761 thiaz-red thiazoliny 22.7 2.7E+02 0.0058 27.3 6.7 112 295-410 17-139 (343)
456 COG2159 Predicted metal-depend 22.7 5.9E+02 0.013 24.2 9.0 65 289-355 143-210 (293)
457 PF03641 Lysine_decarbox: Poss 22.6 2.9E+02 0.0063 22.6 6.1 27 340-366 54-91 (133)
458 cd02042 ParA ParA and ParB of 22.6 2.2E+02 0.0048 21.7 5.2 38 32-69 2-39 (104)
459 PF05724 TPMT: Thiopurine S-me 22.6 1.9E+02 0.0041 26.2 5.3 32 26-65 35-66 (218)
460 cd03111 CpaE_like This protein 22.5 2.5E+02 0.0055 21.8 5.5 50 32-83 2-52 (106)
461 PRK06924 short chain dehydroge 22.5 1.4E+02 0.003 27.1 4.7 33 29-66 1-33 (251)
462 PRK06851 hypothetical protein; 22.4 1.6E+02 0.0035 29.1 5.1 40 27-66 211-250 (367)
463 PHA02754 hypothetical protein; 22.4 1.3E+02 0.0029 20.5 3.1 25 400-424 6-30 (67)
464 PRK08155 acetolactate synthase 22.4 2.7E+02 0.0058 29.4 7.2 76 290-366 14-109 (564)
465 PRK12829 short chain dehydroge 22.3 1.4E+02 0.003 27.4 4.6 34 28-66 10-43 (264)
466 TIGR02016 BchX chlorophyllide 22.3 2E+02 0.0043 27.5 5.7 40 32-72 3-42 (296)
467 TIGR02193 heptsyl_trn_I lipopo 22.3 96 0.0021 29.7 3.6 38 31-69 1-40 (319)
468 PRK11269 glyoxylate carboligas 22.3 4.8E+02 0.01 27.7 9.1 28 339-366 68-101 (591)
469 PRK04930 glutathione-regulated 22.2 1.4E+02 0.0029 26.4 4.1 39 27-66 3-41 (184)
470 PRK13059 putative lipid kinase 22.1 88 0.0019 29.8 3.3 66 290-367 19-90 (295)
471 PF13090 PP_kinase_C: Polyphos 22.0 5.6E+02 0.012 25.1 8.4 68 270-348 199-271 (352)
472 PRK12826 3-ketoacyl-(acyl-carr 22.0 1.5E+02 0.0033 26.8 4.8 32 30-66 7-38 (251)
473 COG1887 TagB Putative glycosyl 22.0 8E+02 0.017 24.5 11.0 106 324-436 273-384 (388)
474 PF00070 Pyr_redox: Pyridine n 22.0 1.2E+02 0.0026 22.0 3.3 23 45-67 9-31 (80)
475 COG3199 Predicted inorganic po 21.9 2.4E+02 0.0052 27.4 5.9 42 338-379 99-151 (355)
476 smart00046 DAGKc Diacylglycero 21.8 91 0.002 25.2 2.9 29 340-368 50-87 (124)
477 PRK06522 2-dehydropantoate 2-r 21.7 83 0.0018 29.9 3.0 30 31-66 2-31 (304)
478 PF11071 DUF2872: Protein of u 21.7 1.1E+02 0.0024 25.0 3.1 28 338-365 71-106 (141)
479 PRK06882 acetolactate synthase 21.6 5.1E+02 0.011 27.3 9.2 29 338-366 66-100 (574)
480 KOG1210|consensus 21.5 1.9E+02 0.0041 27.8 5.1 32 31-67 35-66 (331)
481 PF03358 FMN_red: NADPH-depend 21.5 1.3E+02 0.0029 25.0 3.9 37 30-66 1-39 (152)
482 PRK08229 2-dehydropantoate 2-r 21.5 1.1E+02 0.0024 29.6 4.0 32 29-66 2-33 (341)
483 PF15092 UPF0728: Uncharacteri 21.5 1.3E+02 0.0027 22.7 3.1 24 43-66 23-46 (88)
484 TIGR01969 minD_arch cell divis 21.4 1.7E+02 0.0036 26.7 4.9 38 32-69 3-40 (251)
485 PRK14618 NAD(P)H-dependent gly 21.3 1.3E+02 0.0028 29.1 4.3 34 28-67 3-36 (328)
486 cd00633 Secretoglobin Secretog 21.3 3.1E+02 0.0066 19.4 5.9 50 393-442 15-64 (67)
487 TIGR00041 DTMP_kinase thymidyl 21.3 1.8E+02 0.0039 25.3 5.0 36 30-65 3-38 (195)
488 PRK06466 acetolactate synthase 21.2 5.5E+02 0.012 27.1 9.3 74 292-366 7-100 (574)
489 cd03147 GATase1_Ydr533c_like T 21.2 1.7E+02 0.0038 26.7 4.8 21 47-67 27-47 (231)
490 PRK08181 transposase; Validate 21.1 1.4E+02 0.003 28.1 4.2 38 28-66 105-142 (269)
491 PRK10239 2-amino-4-hydroxy-6-h 21.0 3E+02 0.0066 23.5 5.9 34 273-309 3-36 (159)
492 PRK13232 nifH nitrogenase redu 21.0 1.8E+02 0.0039 27.2 5.1 42 29-71 1-42 (273)
493 PRK13555 azoreductase; Provisi 20.9 1.6E+02 0.0035 26.4 4.5 39 29-67 1-45 (208)
494 PF12689 Acid_PPase: Acid Phos 20.9 1.3E+02 0.0028 26.1 3.7 58 347-404 107-166 (169)
495 cd03109 DTBS Dethiobiotin synt 20.8 1.9E+02 0.0041 23.7 4.6 36 33-68 2-37 (134)
496 cd05565 PTS_IIB_lactose PTS_II 20.8 2.2E+02 0.0047 22.2 4.6 52 31-83 2-55 (99)
497 PRK01906 tetraacyldisaccharide 20.8 1.3E+02 0.0029 29.3 4.1 29 38-66 66-94 (338)
498 PRK06526 transposase; Provisio 20.8 89 0.0019 29.1 2.9 38 28-66 97-134 (254)
499 COG2344 AT-rich DNA-binding pr 20.7 3.4E+02 0.0074 24.0 6.1 57 260-327 136-192 (211)
500 PRK12827 short chain dehydroge 20.6 1.5E+02 0.0032 26.8 4.4 33 29-66 6-38 (249)
No 1
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2e-71 Score=563.55 Aligned_cols=446 Identities=27% Similarity=0.480 Sum_probs=371.3
Q ss_pred hhHHHHHHHHhhccccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC----CCCCeeEEEcccchhhch
Q psy15582 14 SQLALILMAFLLTVESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE----PPVNYTDIDLSFSYKYFK 89 (477)
Q Consensus 14 ~~~~l~~~~~~~~~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 89 (477)
..+||+++++...++++|||+++|.++.+|...+.+++++|++|||+||+++++.... ...+++.+.++...+...
T Consensus 5 ~~~ll~~~~~~~~~~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~ 84 (507)
T PHA03392 5 IIILLLLLLLLSGVRAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFK 84 (507)
T ss_pred HHHHHHHHHHhcccCcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHH
Confidence 3445555555566789999997899999999999999999999999999999964221 246777776653223322
Q ss_pred hhhcccccCccccccccc---cchhHHHHhHHHHHHHHHHHHhCCHHHHHHhcccccC--CCCccEEEEcCccccc----
Q psy15582 90 PQLQKGEVLPDAVDNQRR---LTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDEN--HVKFDLIIYEGLLHTA---- 160 (477)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~pDliI~d~~~~~~---- 160 (477)
..... .+.+. .... ........+ ......|+..+.++.+.++| + +.+||++|+|.. ..|
T Consensus 85 ~~~~~---~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~L-----~~~~~kFDlvi~e~~-~~c~~~l 152 (507)
T PHA03392 85 KLVKS---SAVFR-KRGVVADSSTVTADNY--MGLVRMISDQFDLPNVKNLI-----ANKNNKFDLLVTEAF-LDYPLVF 152 (507)
T ss_pred HHHhh---hhHHH-hhhhhhhHHHHHHHHH--HHHHHHHHHHHCCHHHHHHH-----hcCCCceeEEEeccc-chhHHHH
Confidence 10111 01111 1111 011111123 44467899999999999999 5 778999999976 455
Q ss_pred --cc-C---------------------------ccC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy15582 161 --YL-G---------------------------FLP--KLGYTQSMTLMERMNNLFMQLYSKFYIRSRLMKKQDEIMERY 208 (477)
Q Consensus 161 --~~-g---------------------------~iP--~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (477)
.+ + |+| .+.+++.|+|++|+.|++...... .......+..++.++++
T Consensus 153 a~~~~~~p~i~~ss~~~~~~~~~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~-~~~~~~~~~~~~l~~~~ 231 (507)
T PHA03392 153 SHLFGDAPVIQISSGYGLAENFETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLY-NEFSLLADEQNKLLKQQ 231 (507)
T ss_pred HHHhCCCCEEEEcCCCCchhHHHhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHH
Confidence 12 1 667 677889999999999998776555 44444447888888999
Q ss_pred cCCCCCCHHHhhccccEEEEecCccccCCcCCCCceEEeCccccCC--CCCCChhhHhhhhcCCCceEEEecCCcccCCc
Q psy15582 209 FGTRGLSGKQLEENKTLLFISTSWLLTYPRPVFPNTILLGPIHLNN--PKPLPQNLKDWIEGAKDGVIYFSLGTNMQSAS 286 (477)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~vG~~~~~~--~~~~~~~l~~~l~~~~~~~V~vs~Gs~~~~~~ 286 (477)
++...+++.++.++.+++|+|+++.+++|+|++|+++++||++.+. .+++|+++.+|++...+++|||||||+..+..
T Consensus 232 f~~~~~~~~~l~~~~~l~lvns~~~~d~~rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~~~g~V~vS~GS~~~~~~ 311 (507)
T PHA03392 232 FGPDTPTIRELRNRVQLLFVNVHPVFDNNRPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNSTNGVVYVSFGSSIDTND 311 (507)
T ss_pred cCCCCCCHHHHHhCCcEEEEecCccccCCCCCCCCeeeecccccCCCCCCCCCHHHHHHHhcCCCcEEEEECCCCCcCCC
Confidence 8865688999999999999999999999999999999999998854 46889999999988666899999999976555
Q ss_pred ccHHHHHHHHHHHhhCCCceEEEEecCCCCC-CCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEEec
Q psy15582 287 LQEDKRKAIVDSFKQFPRHRIIWKWEEDILP-DLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGI 365 (477)
Q Consensus 287 ~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~-~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~ 365 (477)
++.+.++.+++++++.+ .+|||+++++..+ +.|+||++.+|+||.++|.||++++||||||.||+.||+++|||+|++
T Consensus 312 ~~~~~~~~~l~a~~~l~-~~viw~~~~~~~~~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~i 390 (507)
T PHA03392 312 MDNEFLQMLLRTFKKLP-YNVLWKYDGEVEAINLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGL 390 (507)
T ss_pred CCHHHHHHHHHHHHhCC-CeEEEEECCCcCcccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEEC
Confidence 78999999999999999 8999999976554 789999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhC-C
Q psy15582 366 PFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVLKAE-G 444 (477)
Q Consensus 366 P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~~~-~ 444 (477)
|+++||+.||++++++|+|+.++..++++++|.++|+++++|++|++||+++++.++++|.+|.++|++|+|+++|++ +
T Consensus 391 P~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~p~~~~~~av~~iE~v~r~~~g 470 (507)
T PHA03392 391 PMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIRNKHG 470 (507)
T ss_pred CCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999899999999999999999999999999999999999999999999999999999 8
Q ss_pred CCCCccccCCCCChhhhhHhHHHHHHHHHh
Q psy15582 445 NVDHLKYNLDQIPWYQYYLVDLAGIFIAGI 474 (477)
Q Consensus 445 ~~~~l~~~~~~~~~~~~~~ldv~~~~~~~~ 474 (477)
+.|||++..+++|||||+|||+++++++.
T Consensus 471 -~~~lr~~~~~l~~~qy~~lDv~~~~~~~~ 499 (507)
T PHA03392 471 -NTSLKTKAANVSYSDYFMSYILVPLVTFT 499 (507)
T ss_pred -cccccccccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987776553
No 2
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=5.3e-68 Score=547.63 Aligned_cols=428 Identities=33% Similarity=0.615 Sum_probs=258.4
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecC----CCCCCCCeeEEEcccc--hhhchhhhcccccCccccc
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDP----LKEPPVNYTDIDLSFS--YKYFKPQLQKGEVLPDAVD 103 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 103 (477)
+|||+ +|. ++||+.++.+++++|++|||+||++++.. ......++++..++.. .+........ .....+.
T Consensus 1 ~kvLv-~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 76 (500)
T PF00201_consen 1 GKVLV-FPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPE-FISKFFS- 76 (500)
T ss_dssp -------------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE-----TT------TT-HHHHHHH-
T ss_pred CEEEE-eCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHH-HHHHHhh-
Confidence 58888 564 77999999999999999999999999943 1123444555444321 1111110110 0001111
Q ss_pred ccc---ccchhHH---HHhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCccEEEEcCccccc-----------------
Q psy15582 104 NQR---RLTGYEF---IVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTA----------------- 160 (477)
Q Consensus 104 ~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pDliI~d~~~~~~----------------- 160 (477)
... ....... .+. +.....|+.++.++.+.+.+ ++.++|++|+|.+ ..|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~--~~~~~~C~~~l~d~~l~~~l-----~~~~fDlvI~d~f-~~c~~~la~~l~iP~i~~~s 148 (500)
T PF00201_consen 77 ESSFANSFWEMFKMLNAFF--DFFSKSCEDLLSDPELMEQL-----KSEKFDLVISDAF-DPCGLALAHYLGIPVIIISS 148 (500)
T ss_dssp HHCCHHHHHHHHHHHHCHH--HS----E--EEEETTSTTHH-----HHHHHCT-EEEEE-ESSHHHHHHHHHHTHHHHHH
T ss_pred hcccchhHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHH-----HhhccccceEeec-cchhHHHHHHhcCCeEEEec
Confidence 111 1111111 022 34456777777777777777 6779999999987 456
Q ss_pred ---------cc-C------ccC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHhhcc
Q psy15582 161 ---------YL-G------FLP--KLGYTQSMTLMERMNNLFMQLYSKFYIRSRLMKKQDEIMERYFGTRGLSGKQLEEN 222 (477)
Q Consensus 161 ---------~~-g------~iP--~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (477)
.. | |+| .+.+++.|++++|+.|.+...... ...+......++..+++++.+. ...+...+
T Consensus 149 ~~~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 226 (500)
T PF00201_consen 149 STPMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFR-FIFRYFFSPQDKLYKKYFGFPF-SFRELLSN 226 (500)
T ss_dssp CCSCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHH-HHHHHGGGS-TTS-EEESS-GG-GCHHHHHH
T ss_pred ccccchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhc-cccccchhhHHHHHhhhccccc-ccHHHHHH
Confidence 11 2 677 677888999999999988777766 5555555336666666666443 34555567
Q ss_pred ccEEEEecCccccCCcCCCCceEEeCccccCCCCCCChhhHhhhhc-CCCceEEEecCCcccCCcccHHHHHHHHHHHhh
Q psy15582 223 KTLLFISTSWLLTYPRPVFPNTILLGPIHLNNPKPLPQNLKDWIEG-AKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQ 301 (477)
Q Consensus 223 ~~~~l~~s~~~l~~~~~~~~~~~~vG~~~~~~~~~~~~~l~~~l~~-~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~ 301 (477)
.+++++++.+.+++|+|++|+++++|+++...++++|+++..|++. .++++|||||||... .++.+..+++++++++
T Consensus 227 ~~l~l~ns~~~ld~prp~~p~v~~vGgl~~~~~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~--~~~~~~~~~~~~~~~~ 304 (500)
T PF00201_consen 227 ASLVLINSHPSLDFPRPLLPNVVEVGGLHIKPAKPLPEELWNFLDSSGKKGVVYVSFGSIVS--SMPEEKLKEIAEAFEN 304 (500)
T ss_dssp HHHCCSSTEEE----HHHHCTSTTGCGC-S----TCHHHHHHHTSTTTTTEEEEEE-TSSST--T-HHHHHHHHHHHHHC
T ss_pred HHHHhhhccccCcCCcchhhcccccCccccccccccccccchhhhccCCCCEEEEecCcccc--hhHHHHHHHHHHHHhh
Confidence 8889999999999999999999999999998888999999999988 479999999999985 3678889999999999
Q ss_pred CCCceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHc
Q psy15582 302 FPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESM 381 (477)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~ 381 (477)
.+ .+|||++++.....+++|+++.+|+||.++|+||++++||||||+||+.||+++|||+|++|+++||+.||+++++.
T Consensus 305 ~~-~~~iW~~~~~~~~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~ 383 (500)
T PF00201_consen 305 LP-QRFIWKYEGEPPENLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEK 383 (500)
T ss_dssp ST-TEEEEEETCSHGCHHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHT
T ss_pred CC-CcccccccccccccccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEE
Confidence 99 79999999876677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCCCCccccCCCCChhhh
Q psy15582 382 DVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVLKAEGNVDHLKYNLDQIPWYQY 461 (477)
Q Consensus 382 G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~~~~~~~~l~~~~~~~~~~~~ 461 (477)
|+|+.++.++++.+++.++|+++|+|++|++||+++++.+++||..|.++|++|+|+++|+++ ++|||+...+++||||
T Consensus 384 G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~p~~p~~~~~~~ie~v~~~~~-~~~l~~~~~~l~~~~~ 462 (500)
T PF00201_consen 384 GVGVVLDKNDLTEEELRAAIREVLENPSYKENAKRLSSLFRDRPISPLERAVWWIEYVARHGG-APHLRSPARDLSFYQY 462 (500)
T ss_dssp TSEEEEGGGC-SHHHHHHHHHHHHHSHHHHHHHHHHHHTTT---------------------------------------
T ss_pred eeEEEEEecCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-CcccCChhhcCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hHhHHHHHHHHHhh
Q psy15582 462 YLVDLAGIFIAGIF 475 (477)
Q Consensus 462 ~~ldv~~~~~~~~~ 475 (477)
|+|||+++++++++
T Consensus 463 ~~lDv~~~~~~~~~ 476 (500)
T PF00201_consen 463 YLLDVIAFLLLIIL 476 (500)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 99999987765544
No 3
>KOG1192|consensus
Probab=100.00 E-value=1.2e-44 Score=373.77 Aligned_cols=424 Identities=28% Similarity=0.478 Sum_probs=312.4
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCCCCC-ee--E---EEcccchhhchhhhcccccCccc
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEPPVN-YT--D---IDLSFSYKYFKPQLQKGEVLPDA 101 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~~~~-~~--~---~~~~~~~~~~~~~~~~~~~~~~~ 101 (477)
+..+||+++| +.||++|+..+|+.|+++||+||++++......... .. . +.... ...... .. ...+.+
T Consensus 5 ~~~~il~~~p--~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~--~~~~~~ 78 (496)
T KOG1192|consen 5 KAHNILVPFP--GQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPP-FEFLTI-PD--GLPEGW 78 (496)
T ss_pred cceeEEEECC--cccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecCh-HHhhhh-hh--hhccch
Confidence 4567777444 999999999999999999999999999543322111 11 1 11111 001010 00 000111
Q ss_pred cccccccchhHHHHhHHHHHHHHHHHHhCCHH-HHHHhcccccCCCCccEEEEcCccccc--------------------
Q psy15582 102 VDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQ-MQQFFKYIDENHVKFDLIIYEGLLHTA-------------------- 160 (477)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~pDliI~d~~~~~~-------------------- 160 (477)
. ... ..... .. ......|...+.+.. ..... ...+||++|+|.+..+.
T Consensus 79 ~-~~~--~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~ 147 (496)
T KOG1192|consen 79 E-DDD--LDISE-SL--LELNKTCEDLLRDPLEKLLLL-----KSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSA 147 (496)
T ss_pred H-HHH--HHHHH-HH--HHHHHHHHHHHhchHHHHHHh-----hcCCccEEEechhhHHHHHhcccceEEEeecccCchH
Confidence 1 000 01111 12 445566666665533 22333 34449999999974322
Q ss_pred ---ccC------ccC--CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHcCCCC---CCHHHhhcccc
Q psy15582 161 ---YLG------FLP--KLGYT-QSMTLMERMNNLFMQLYSKFYIRSRLM-KKQDEIMERYFGTRG---LSGKQLEENKT 224 (477)
Q Consensus 161 ---~~g------~iP--~~~~~-~~~~~~~r~~n~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~ 224 (477)
..| |+| ..... ..+++++|..|........ ....... +.............. +...++..+.+
T Consensus 148 ~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 226 (496)
T KOG1192|consen 148 VLLALGLPSPLSYVPSPFSLSSGDDMSFPERVPNLIKKDLPS-FLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNAS 226 (496)
T ss_pred HHHhcCCcCcccccCcccCccccccCcHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCe
Confidence 111 344 22222 5689999999987777666 4443333 344455555543221 34557778888
Q ss_pred EEEEecCccccC-CcCCCCceEEeCccccCCCC---CCChhhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHh
Q psy15582 225 LLFISTSWLLTY-PRPVFPNTILLGPIHLNNPK---PLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFK 300 (477)
Q Consensus 225 ~~l~~s~~~l~~-~~~~~~~~~~vG~~~~~~~~---~~~~~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~ 300 (477)
..++++.+.++. +++..++++.+||++..... +++.+|.+.++...+++|||||||+..+..++.+...+++.+++
T Consensus 227 ~~~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~ 306 (496)
T KOG1192|consen 227 FIFLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALE 306 (496)
T ss_pred EEEEccCcccCCCCCCCCCCceEECcEEecCccccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHH
Confidence 999999999888 67788999999999998533 24566666665534699999999999665689999999999999
Q ss_pred hCCCceEEEEecCCCC----CCC----CCCeEEeecCChhhh-hcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcch
Q psy15582 301 QFPRHRIIWKWEEDIL----PDL----PSNVICRKWLPQHDI-LAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQ 371 (477)
Q Consensus 301 ~~~~~~~l~~~~~~~~----~~~----~~nv~i~~~vp~~~l-L~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ 371 (477)
+.++..|+|++..+.. .+. +.||...+|+||.++ |.|+++++||||||+||++|++++|||++++|+++||
T Consensus 307 ~~~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ 386 (496)
T KOG1192|consen 307 SLQGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQ 386 (496)
T ss_pred hCCCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccc
Confidence 9944899999997431 223 458999999999998 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCCCCccc
Q psy15582 372 DTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVLKAEGNVDHLKY 451 (477)
Q Consensus 372 ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~~~~~~~~l~~ 451 (477)
+.||+++++.|.|.++...+++.+.+.+++.+++++++|.++++++++.++++|..+ +.+++|+|.+.++++ +.++++
T Consensus 387 ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~~p~~~-~~~~~~~e~~~~~~~-~~~l~~ 464 (496)
T KOG1192|consen 387 PLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILENEEYKEAAKRLSEILRDQPISP-ELAVKWVEFVARHGG-AKHLKE 464 (496)
T ss_pred hhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhcCC-CcccCc
Confidence 999999999999988887877776699999999999999999999999999999999 999999999999998 999999
Q ss_pred cCCCCChhhhhHhHHHHHHHH
Q psy15582 452 NLDQIPWYQYYLVDLAGIFIA 472 (477)
Q Consensus 452 ~~~~~~~~~~~~ldv~~~~~~ 472 (477)
. .+++|++|+++|++.++..
T Consensus 465 ~-~~~~~~~~~~~d~~~~~~~ 484 (496)
T KOG1192|consen 465 A-AHLSFIEYGSLDVIAFLFL 484 (496)
T ss_pred c-ccCChhhhhhhHHHHHHHH
Confidence 9 8999999999999965333
No 4
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=4.1e-40 Score=329.11 Aligned_cols=383 Identities=17% Similarity=0.263 Sum_probs=253.3
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC--------CCCCeeEEEcccchhhchhhhcccccCcc
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE--------PPVNYTDIDLSFSYKYFKPQLQKGEVLPD 100 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (477)
..+|++ +|+++.||++|++.||+.|+.||..|||+++..... ...+++++.++.. +. .. ++. +.
T Consensus 6 ~~HVvl-~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p-~~-dg-lp~----~~ 77 (472)
T PLN02670 6 VLHVAM-FPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLP-SV-PG-LPS----SA 77 (472)
T ss_pred CcEEEE-eCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCC-cc-CC-CCC----Cc
Confidence 457877 899999999999999999999999999999943211 1124666666631 11 11 111 00
Q ss_pred ccccccccc-hhHHHHhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCccEEEEcCccccc-----ccCccC-CCCCCCC
Q psy15582 101 AVDNQRRLT-GYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTA-----YLGFLP-KLGYTQS 173 (477)
Q Consensus 101 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pDliI~d~~~~~~-----~~g~iP-~~~~~~~ 173 (477)
+ ...... .... +. ......+. +.+.+++ ++.++++||+|.+..|+ .+| || ..-++..
T Consensus 78 -~-~~~~~~~~~~~-~~--~~~~~~~~-----~~~~~~l-----~~~~~~cvI~D~f~~wa~~vA~~~g-IP~~~f~~~~ 141 (472)
T PLN02670 78 -E-SSTDVPYTKQQ-LL--KKAFDLLE-----PPLTTFL-----ETSKPDWIIYDYASHWLPSIAAELG-ISKAFFSLFT 141 (472)
T ss_pred -c-cccccchhhHH-HH--HHHHHHhH-----HHHHHHH-----HhCCCcEEEECCcchhHHHHHHHcC-CCEEEEehhh
Confidence 0 000110 0000 11 11122222 4466777 55579999999998777 556 66 1111111
Q ss_pred CCHHHHHHHHHHHHHH--------HHH--HHHH--------hh-HHHHHHHHHHcCCCCCCHH------HhhccccEEEE
Q psy15582 174 MTLMERMNNLFMQLYS--------KFY--IRSR--------LM-KKQDEIMERYFGTRGLSGK------QLEENKTLLFI 228 (477)
Q Consensus 174 ~~~~~r~~n~~~~~~~--------~~~--~~~~--------~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~ 228 (477)
.... .....+..... ... +... +. ..+...... ......... .....++.+++
T Consensus 142 a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~-~~~~~~~~~~~~~~~~~~~~~~gvlv 219 (472)
T PLN02670 142 AATL-SFIGPPSSLMEGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEK-TEEDETGPSDSVRFGFAIGGSDVVII 219 (472)
T ss_pred HHHH-HHHhhhHhhhhcccCCCccccccCCCCcCCCCccccccHHHhhHHHhc-cCccchHHHHHHHHHhhcccCCEEEE
Confidence 0000 00000000000 000 0000 00 000000000 000000000 01235778999
Q ss_pred ecCccccCC-----cC-CCCceEEeCccccC--C-CC-C-C----ChhhHhhhhcC-CCceEEEecCCcccCCcccHHHH
Q psy15582 229 STSWLLTYP-----RP-VFPNTILLGPIHLN--N-PK-P-L----PQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDKR 292 (477)
Q Consensus 229 ~s~~~l~~~-----~~-~~~~~~~vG~~~~~--~-~~-~-~----~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~~~~~ 292 (477)
||+++||.. +. ..+.++.|||+... . .. . . .+++.+|++++ .+++|||||||... ++.+.+
T Consensus 220 NTf~eLE~~~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~---l~~~q~ 296 (472)
T PLN02670 220 RSSPEFEPEWFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEAS---LRREEV 296 (472)
T ss_pred eCHHHHhHHHHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEeccccc---CCHHHH
Confidence 999999975 22 23579999999652 1 11 1 1 14688999997 58999999999986 799999
Q ss_pred HHHHHHHhhCCCceEEEEecCCC------CCCCCCC---------eEEeecCChhhhhcCCCceEEEEcCChhHHHHHHH
Q psy15582 293 KAIVDSFKQFPRHRIIWKWEEDI------LPDLPSN---------VICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIH 357 (477)
Q Consensus 293 ~~i~~al~~~~~~~~l~~~~~~~------~~~~~~n---------v~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~ 357 (477)
++++.+|+..+ ..|||+++... ...+|+| +.+.+|+||.++|.|+++++||||||+||++||++
T Consensus 297 ~ela~gl~~s~-~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~ 375 (472)
T PLN02670 297 TELALGLEKSE-TPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLG 375 (472)
T ss_pred HHHHHHHHHCC-CCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHH
Confidence 99999999999 89999998521 1134544 77789999999999999999999999999999999
Q ss_pred hCCcEEeccCCcchHHHHHHHHHcCceEEccCC----CCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhcCCCChHH
Q psy15582 358 FGVPMIGIPFFADQDTNVRKLESMDVARFLEYE----NITAETLVTLMKSILYNE---TVYRKSQVYSKLSNTQMMSPKD 430 (477)
Q Consensus 358 ~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~----~~~~~~l~~al~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~ 430 (477)
+|||||++|+++||+.||+++++.|+|+.++.. .++.+++.++|+++|.++ +||+||+++++.++++ .+.+
T Consensus 376 ~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~--~~~~ 453 (472)
T PLN02670 376 FGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDM--DRNN 453 (472)
T ss_pred cCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCc--chhH
Confidence 999999999999999999999999999999643 379999999999999775 7999999999999996 6677
Q ss_pred HHHHHHHHHHHhC
Q psy15582 431 TAVWWIEYVLKAE 443 (477)
Q Consensus 431 ~a~~~ie~~~~~~ 443 (477)
++++.++..++..
T Consensus 454 ~~~~~~~~~l~~~ 466 (472)
T PLN02670 454 RYVDELVHYLREN 466 (472)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776653
No 5
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=3.3e-40 Score=328.89 Aligned_cols=375 Identities=17% Similarity=0.203 Sum_probs=243.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCC-------CCCeeEEEcccchhhchhhhcccccCccc
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEP-------PVNYTDIDLSFSYKYFKPQLQKGEVLPDA 101 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (477)
..+|++ +|+++.||++|++.+|+.|+.+||+|||+++...... ..++.+..++..+ ... ++. . .
T Consensus 4 ~~hvv~-~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~--~dg-Lp~----g-~ 74 (442)
T PLN02208 4 KFHAFM-FPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPP--VNG-LPA----G-A 74 (442)
T ss_pred CCEEEE-ecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCC--ccC-CCC----C-c
Confidence 357777 8999999999999999999999999999998432211 1133344333210 011 111 0 0
Q ss_pred cccccccchhHHHHhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCccEEEEcCccccc-----ccCccC-CCCCCCCCC
Q psy15582 102 VDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTA-----YLGFLP-KLGYTQSMT 175 (477)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pDliI~d~~~~~~-----~~g~iP-~~~~~~~~~ 175 (477)
. ....+... +. ........... +.+.+.+ ++.++|+||+|. +.|. .+| || ..-++....
T Consensus 75 ~-~~~~l~~~---l~--~~~~~~~~~~~--~~l~~~L-----~~~~~~cVV~D~-~~wa~~vA~e~g-iP~~~f~~~~a~ 139 (442)
T PLN02208 75 E-TTSDIPIS---MD--NLLSEALDLTR--DQVEAAV-----RALRPDLIFFDF-AQWIPEMAKEHM-IKSVSYIIVSAT 139 (442)
T ss_pred c-cccchhHH---HH--HHHHHHHHHHH--HHHHHHH-----hhCCCeEEEECC-cHhHHHHHHHhC-CCEEEEEhhhHH
Confidence 0 00011000 11 12222222221 4577777 667899999995 5555 556 66 111111000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHcC--CCCCC--------HHHhhccccEEEEecCccccCC----
Q psy15582 176 LMERMNNLFMQLYSKFYIRSRLMKKQDE----IMERYFG--TRGLS--------GKQLEENKTLLFISTSWLLTYP---- 237 (477)
Q Consensus 176 ~~~r~~n~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~--------~~~~~~~~~~~l~~s~~~l~~~---- 237 (477)
... ..+ +. .. ... ...+.+.. ...+.+. ..... ..+....++.+++||+.++|..
T Consensus 140 ~~~-~~~-~~---~~-~~~-~~~pglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~ 212 (442)
T PLN02208 140 TIA-HTH-VP---GG-KLG-VPPPGYPSSKVLFRENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDY 212 (442)
T ss_pred HHH-HHc-cC---cc-ccC-CCCCCCCCcccccCHHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHH
Confidence 000 000 00 00 000 00000000 0000000 00000 0012345788999999999974
Q ss_pred --cCCCCceEEeCccccCCC--CCCChhhHhhhhcC-CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEec
Q psy15582 238 --RPVFPNTILLGPIHLNNP--KPLPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWE 312 (477)
Q Consensus 238 --~~~~~~~~~vG~~~~~~~--~~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~ 312 (477)
+++.|+++.|||++.... .++++++.+|++.+ .+++|||||||... ++.+.+.+++..++..+ ..++|.++
T Consensus 213 ~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~---l~~~q~~e~~~~l~~s~-~pf~wv~r 288 (442)
T PLN02208 213 ISRQYHKKVLLTGPMFPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQII---LEKDQFQELCLGMELTG-LPFLIAVK 288 (442)
T ss_pred HHhhcCCCEEEEeecccCcCCCCCCHHHHHHHHhcCCCCcEEEEecccccc---CCHHHHHHHHHHHHhCC-CcEEEEEe
Confidence 445689999999987543 45678899999987 57999999999986 78887888877765444 55555554
Q ss_pred CC-----CCCCCC---------CCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcchHHHHHHH
Q psy15582 313 ED-----ILPDLP---------SNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKL 378 (477)
Q Consensus 313 ~~-----~~~~~~---------~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~ 378 (477)
.+ ....+| .|+.+.+|+||.++|.||++++||||||+||++||+++|||||++|+++||+.||+++
T Consensus 289 ~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~ 368 (442)
T PLN02208 289 PPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLM 368 (442)
T ss_pred CCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHH
Confidence 22 112345 6888999999999999999999999999999999999999999999999999999987
Q ss_pred HH-cCceEEccCCC---CCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy15582 379 ES-MDVARFLEYEN---ITAETLVTLMKSILYNE-----TVYRKSQVYSKLSNTQMMSPKDTAVWWIEYV 439 (477)
Q Consensus 379 ~~-~G~g~~l~~~~---~~~~~l~~al~~ll~~~-----~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~ 439 (477)
++ .|+|+.++.++ ++.+++.++|+++++++ .+|++++++++.... ..+......++|+.+
T Consensus 369 ~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~-~gsS~~~l~~~v~~l 437 (442)
T PLN02208 369 TEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS-PGLLTGYVDKFVEEL 437 (442)
T ss_pred HHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHH
Confidence 76 89999997654 89999999999999764 399999999999865 355556666666655
No 6
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=3e-39 Score=324.63 Aligned_cols=380 Identities=19% Similarity=0.179 Sum_probs=250.4
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC--CCCCCeeEEEcccchhhchhhhcccccCccccccccc
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK--EPPVNYTDIDLSFSYKYFKPQLQKGEVLPDAVDNQRR 107 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (477)
+|||| ++.|+.||++|+++||++|++|||+|+++++.... ....|++++.++...+.... ... ..+... ...
T Consensus 1 mrIl~-~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G~~~~~~~~~~~~~~~-~~~--~~~~~~--~~~ 74 (401)
T cd03784 1 MRVLI-TTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAGLEFVPVGGDPDELLA-SPE--RNAGLL--LLG 74 (401)
T ss_pred CeEEE-EeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcCCceeeCCCCHHHHHh-hhh--hccccc--ccc
Confidence 48999 78899999999999999999999999999995433 34678888887754333221 110 000000 000
Q ss_pred cchhHHHHhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCccEEEEcCccccc-----ccCccC---CCCCCC-CCC---
Q psy15582 108 LTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTA-----YLGFLP---KLGYTQ-SMT--- 175 (477)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pDliI~d~~~~~~-----~~g~iP---~~~~~~-~~~--- 175 (477)
...... .. ......+...+ +.+.+.+ ++.+||+||+|....++ .+| || ....+. ..+
T Consensus 75 ~~~~~~-~~--~~~~~~~~~~~--~~~~~~~-----~~~~pDlvi~d~~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~ 143 (401)
T cd03784 75 PGLLLG-AL--RLLRREAEAML--DDLVAAA-----RDWGPDLVVADPLAFAGAVAAEALG-IPAVRLLLGPDTPTSAFP 143 (401)
T ss_pred hHHHHH-HH--HHHHHHHHHHH--HHHHHHh-----cccCCCEEEeCcHHHHHHHHHHHhC-CCeEEeecccCCccccCC
Confidence 111111 11 22333333333 2345555 77899999999764333 455 67 111110 000
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHhhccccEEEEecCccc-cCCcCCCCceEEeCccccC
Q psy15582 176 -LMERMNNLFMQLYSKFYIRSRLMKKQDEIMERYFGTRGLSGKQLEENKTLLFISTSWLL-TYPRPVFPNTILLGPIHLN 253 (477)
Q Consensus 176 -~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l-~~~~~~~~~~~~vG~~~~~ 253 (477)
...+......................++ .++.+|.+.... .....+..+....+.+ ..+.+++++..++|+....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 220 (401)
T cd03784 144 PPLGRANLRLYALLEAELWQDLLGAWLRA-RRRRLGLPPLSL--LDGSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRD 220 (401)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCcc--cccCCCcEEEecCcccCCCCCCccccCcEeCCCCCC
Confidence 0011111111111110111112223333 334455321111 1112223333333333 3445677788888643332
Q ss_pred C--CCCCChhhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC--CCCCCCeEEeecC
Q psy15582 254 N--PKPLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL--PDLPSNVICRKWL 329 (477)
Q Consensus 254 ~--~~~~~~~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~--~~~~~nv~i~~~v 329 (477)
. ....++++..|++. ++++|||++||+.... +....+.++++++..+ .++||..+.... ...++|+++.+|+
T Consensus 221 ~~~~~~~~~~~~~~~~~-~~~~v~v~~Gs~~~~~--~~~~~~~~~~a~~~~~-~~~i~~~g~~~~~~~~~~~~v~~~~~~ 296 (401)
T cd03784 221 VPYNGPPPPELWLFLAA-GRPPVYVGFGSMVVRD--PEALARLDVEAVATLG-QRAILSLGWGGLGAEDLPDNVRVVDFV 296 (401)
T ss_pred CCCCCCCCHHHHHHHhC-CCCcEEEeCCCCcccC--HHHHHHHHHHHHHHcC-CeEEEEccCccccccCCCCceEEeCCC
Confidence 2 33456777888877 7999999999987632 5788899999999887 999998886433 2567899999999
Q ss_pred ChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHH
Q psy15582 330 PQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNET 409 (477)
Q Consensus 330 p~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~ 409 (477)
|+.++| ++|++||||||+||++||+++|+|+|++|...||+.||+++++.|+|+.++..+++++++.+++++++++ .
T Consensus 297 p~~~ll--~~~d~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~-~ 373 (401)
T cd03784 297 PHDWLL--PRCAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDP-P 373 (401)
T ss_pred CHHHHh--hhhheeeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH-H
Confidence 999999 5599999999999999999999999999999999999999999999999988888999999999999975 5
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy15582 410 VYRKSQVYSKLSNTQMMSPKDTAVWWIEY 438 (477)
Q Consensus 410 ~~~~a~~~~~~~~~~~~~~~~~a~~~ie~ 438 (477)
+++++++..+.++. .+|.+.++++||.
T Consensus 374 ~~~~~~~~~~~~~~--~~g~~~~~~~ie~ 400 (401)
T cd03784 374 SRRRAAALLRRIRE--EDGVPSAADVIER 400 (401)
T ss_pred HHHHHHHHHHHHHh--ccCHHHHHHHHhh
Confidence 66777777777766 5899999999986
No 7
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-39 Score=326.88 Aligned_cols=199 Identities=17% Similarity=0.311 Sum_probs=168.5
Q ss_pred ccccEEEEecCccccCC----------cCCCCceEEeCccccCCC----CC--CCh--hhHhhhhcC-CCceEEEecCCc
Q psy15582 221 ENKTLLFISTSWLLTYP----------RPVFPNTILLGPIHLNNP----KP--LPQ--NLKDWIEGA-KDGVIYFSLGTN 281 (477)
Q Consensus 221 ~~~~~~l~~s~~~l~~~----------~~~~~~~~~vG~~~~~~~----~~--~~~--~l~~~l~~~-~~~~V~vs~Gs~ 281 (477)
..++.+++||+.+||.. ++..|+++.|||++.... .. +++ +..+|++++ .+++|||+|||+
T Consensus 204 ~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~ 283 (448)
T PLN02562 204 KSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSW 283 (448)
T ss_pred ccCCEEEEcChhhhCHHHHHHHHhhhccccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEeccc
Confidence 34678999999999973 344678999999976531 11 233 345999997 467999999998
Q ss_pred ccCCcccHHHHHHHHHHHhhCCCceEEEEecCC---CCC-----CCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHH
Q psy15582 282 MQSASLQEDKRKAIVDSFKQFPRHRIIWKWEED---ILP-----DLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQ 353 (477)
Q Consensus 282 ~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~---~~~-----~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~ 353 (477)
.. .++.+.+++++.++++.+ .+|||+++.. .++ ..++|+.+.+|+||.++|.|+++++||||||+||+.
T Consensus 284 ~~--~~~~~~~~~l~~~l~~~g-~~fiW~~~~~~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~ 360 (448)
T PLN02562 284 VS--PIGESNVRTLALALEASG-RPFIWVLNPVWREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTM 360 (448)
T ss_pred cc--CCCHHHHHHHHHHHHHCC-CCEEEEEcCCchhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHH
Confidence 63 258999999999999999 8999998642 122 146799999999999999999999999999999999
Q ss_pred HHHHhCCcEEeccCCcchHHHHHHHHH-cCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcC
Q psy15582 354 EAIHFGVPMIGIPFFADQDTNVRKLES-MDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQ 424 (477)
Q Consensus 354 Eal~~GvP~i~~P~~~dQ~~na~~~~~-~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~ 424 (477)
||+++|||+|++|+++||+.||+++++ .|+|+.+. +++.+++.++|+++|+|++|++||++++++....
T Consensus 361 Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~--~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~ 430 (448)
T PLN02562 361 EAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS--GFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGE 430 (448)
T ss_pred HHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC--CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999987 58888874 5799999999999999999999999999988764
No 8
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=9.2e-40 Score=326.21 Aligned_cols=199 Identities=22% Similarity=0.431 Sum_probs=170.8
Q ss_pred ccccEEEEecCccccCC-------cCCCCceEEeCccccCCCCCCC-------hhhHhhhhcC-CCceEEEecCCcccCC
Q psy15582 221 ENKTLLFISTSWLLTYP-------RPVFPNTILLGPIHLNNPKPLP-------QNLKDWIEGA-KDGVIYFSLGTNMQSA 285 (477)
Q Consensus 221 ~~~~~~l~~s~~~l~~~-------~~~~~~~~~vG~~~~~~~~~~~-------~~l~~~l~~~-~~~~V~vs~Gs~~~~~ 285 (477)
.+++.+++||++++|.+ ++..|+++.|||++.....+.+ +++.+|++++ .+++|||||||...
T Consensus 210 ~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~-- 287 (468)
T PLN02207 210 TKANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGR-- 287 (468)
T ss_pred ccCCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcC--
Confidence 46789999999999987 4566889999999864322222 5789999997 57899999999886
Q ss_pred cccHHHHHHHHHHHhhCCCceEEEEecCCCC-------C----CCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHH
Q psy15582 286 SLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL-------P----DLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQE 354 (477)
Q Consensus 286 ~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~-------~----~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~E 354 (477)
++.+.+++++.+++..+ .+|||+++++.. + ..++|..+.+|+||.++|.|+++++||||||+||+.|
T Consensus 288 -~~~~q~~ela~~l~~~~-~~flW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~E 365 (468)
T PLN02207 288 -LRGPLVKEIAHGLELCQ-YRFLWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVE 365 (468)
T ss_pred -CCHHHHHHHHHHHHHCC-CcEEEEEeCCCccccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHH
Confidence 78999999999999999 899999985321 1 1356778899999999999999999999999999999
Q ss_pred HHHhCCcEEeccCCcchHHHHHHHHH-cCceEEcc------CC-CCCHHHHHHHHHHHhc--CHHHHHHHHHHHHHhhc
Q psy15582 355 AIHFGVPMIGIPFFADQDTNVRKLES-MDVARFLE------YE-NITAETLVTLMKSILY--NETVYRKSQVYSKLSNT 423 (477)
Q Consensus 355 al~~GvP~i~~P~~~dQ~~na~~~~~-~G~g~~l~------~~-~~~~~~l~~al~~ll~--~~~~~~~a~~~~~~~~~ 423 (477)
|+++|||||++|+++||+.||+++++ .|+|+.+. .+ -++.++|.++|++++. +++||+||+++++..+.
T Consensus 366 ai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~ 444 (468)
T PLN02207 366 SLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQR 444 (468)
T ss_pred HHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998776 89998663 12 3589999999999997 68999999999998873
No 9
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=4.7e-39 Score=321.87 Aligned_cols=365 Identities=22% Similarity=0.271 Sum_probs=255.4
Q ss_pred CCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC--CCCCCeeEEEcccchhhchhhhcccccCccccccccccchhHHH
Q psy15582 37 PTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK--EPPVNYTDIDLSFSYKYFKPQLQKGEVLPDAVDNQRRLTGYEFI 114 (477)
Q Consensus 37 ~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (477)
..|+.||++|+++||++|++|||+|+++++.... ....|+.++.++........ .. . .. . .....
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~~--~~----~-~~-~----~~~~~- 68 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAAGAEFVLYGSALPPPDN--PP----E-NT-E----EEPID- 68 (392)
T ss_pred CCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcCCEEEecCCcCccccc--cc----c-cc-C----cchHH-
Confidence 5789999999999999999999999999995443 33578888877643222111 00 0 00 0 11111
Q ss_pred HhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCccEEEEcCccccc-----ccCccC---CCCCC-CC-------CCHHH
Q psy15582 115 VNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTA-----YLGFLP---KLGYT-QS-------MTLME 178 (477)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pDliI~d~~~~~~-----~~g~iP---~~~~~-~~-------~~~~~ 178 (477)
+. ......+...+ +.+.+.+ ++.+||+||+|....++ .+| || .+... .. ..+..
T Consensus 69 ~~--~~~~~~~~~~~--~~l~~~~-----~~~~pDlVi~d~~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~~~~~~~~ 138 (392)
T TIGR01426 69 II--EKLLDEAEDVL--PQLEEAY-----KGDRPDLIVYDIASWTGRLLARKWD-VPVISSFPTFAANEEFEEMVSPAGE 138 (392)
T ss_pred HH--HHHHHHHHHHH--HHHHHHh-----cCCCCCEEEECCccHHHHHHHHHhC-CCEEEEehhhcccccccccccccch
Confidence 11 22223333223 3456666 77899999999975443 456 77 11110 00 00111
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHhh-ccccEEEEecCccccCCc-CCCCceEEeCccccCCCC
Q psy15582 179 RMNNLFMQLYSKFYIRSRLMKKQDEIMERYFGTRGLSGKQLE-ENKTLLFISTSWLLTYPR-PVFPNTILLGPIHLNNPK 256 (477)
Q Consensus 179 r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~s~~~l~~~~-~~~~~~~~vG~~~~~~~~ 256 (477)
...+.. .... .....+.+.+++.+++ +|.+.+....+. ...+..+..+.+.++++. .++++++++||+......
T Consensus 139 ~~~~~~--~~~~-~~~~~~~~~~~~~r~~-~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~~~~~ 214 (392)
T TIGR01426 139 GSAEEG--AIAE-RGLAEYVARLSALLEE-HGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFVGPCIGDRKE 214 (392)
T ss_pred hhhhhh--cccc-chhHHHHHHHHHHHHH-hCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEEECCCCCCccc
Confidence 111100 0000 0012233456666554 454333333332 234456777777787764 588999999998755321
Q ss_pred CCChhhHhhhhcC-CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCC----CCCCCCCeEEeecCCh
Q psy15582 257 PLPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI----LPDLPSNVICRKWLPQ 331 (477)
Q Consensus 257 ~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~----~~~~~~nv~i~~~vp~ 331 (477)
...|.... ++++||+++||+... ..+.++.+++++.+.+ ++++|..++.. ....++|+.+.+|+|+
T Consensus 215 -----~~~~~~~~~~~~~v~vs~Gs~~~~---~~~~~~~~~~al~~~~-~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~ 285 (392)
T TIGR01426 215 -----DGSWERPGDGRPVVLISLGTVFNN---QPSFYRTCVEAFRDLD-WHVVLSVGRGVDPADLGELPPNVEVRQWVPQ 285 (392)
T ss_pred -----cCCCCCCCCCCCEEEEecCccCCC---CHHHHHHHHHHHhcCC-CeEEEEECCCCChhHhccCCCCeEEeCCCCH
Confidence 11244433 689999999998652 3568899999999988 89998876532 2356889999999999
Q ss_pred hhhhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHH
Q psy15582 332 HDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVY 411 (477)
Q Consensus 332 ~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~ 411 (477)
.+++ ++++++|||||.||+.||+++|+|+|++|...||+.||+++++.|+|+.+...+++++++.++|+++++|++|+
T Consensus 286 ~~ll--~~~~~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~ 363 (392)
T TIGR01426 286 LEIL--KKADAFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYA 363 (392)
T ss_pred HHHH--hhCCEEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHH
Confidence 9999 45999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q psy15582 412 RKSQVYSKLSNTQMMSPKDTAVWWIEYVLK 441 (477)
Q Consensus 412 ~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~ 441 (477)
++++++++.++. .++.++|+++||++++
T Consensus 364 ~~~~~l~~~~~~--~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 364 ERLRKMRAEIRE--AGGARRAADEIEGFLA 391 (392)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHhhc
Confidence 999999999987 5899999999999865
No 10
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.2e-38 Score=320.30 Aligned_cols=375 Identities=17% Similarity=0.219 Sum_probs=234.4
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCC--C---------C----CeeEEEcccchhhchhhh
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEP--P---------V----NYTDIDLSFSYKYFKPQL 92 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~--~---------~----~~~~~~~~~~~~~~~~~~ 92 (477)
.+.+|++ +|+++.||++|++.||+.|+.|||+|||+++...... . . .+..+.++...+......
T Consensus 4 ~~~hVvl-vp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~ 82 (482)
T PLN03007 4 EKLHILF-FPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGC 82 (482)
T ss_pred CCcEEEE-ECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCc
Confidence 4568888 8999999999999999999999999999999543211 0 1 122222221100000000
Q ss_pred cccccCccccccccccchhHHHHhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCccEEEEcCccccc-----ccCccC-
Q psy15582 93 QKGEVLPDAVDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTA-----YLGFLP- 166 (477)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pDliI~d~~~~~~-----~~g~iP- 166 (477)
.. ..... .... ..... +. ..+......+. +.+.+.+ ++.+||+||+|.++.|+ .+| ||
T Consensus 83 e~---~~~~~-~~~~-~~~~~-~~--~~~~~~~~~l~--~~l~~~l-----~~~~~~~IV~D~~~~w~~~vA~~lg-IP~ 146 (482)
T PLN03007 83 EN---VDFIT-SNNN-DDSGD-LF--LKFLFSTKYFK--DQLEKLL-----ETTRPDCLVADMFFPWATEAAEKFG-VPR 146 (482)
T ss_pred cc---ccccc-cccc-cchHH-HH--HHHHHHHHHHH--HHHHHHH-----hcCCCCEEEECCcchhHHHHHHHhC-CCe
Confidence 00 00000 0000 00000 11 11112222221 4466777 66789999999997776 567 77
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHH---Hh-hHHHH---HHHHHHc---CCC------CCCHHHhhccccEEEEec
Q psy15582 167 KLGYTQSMTLMERMNNLFMQLYSKFYIRS---RL-MKKQD---EIMERYF---GTR------GLSGKQLEENKTLLFIST 230 (477)
Q Consensus 167 ~~~~~~~~~~~~r~~n~~~~~~~~~~~~~---~~-~~~~~---~~~~~~~---~~~------~~~~~~~~~~~~~~l~~s 230 (477)
..-++.......-..+........ .... .+ .+.+. ......+ ... .....+....++.+++|+
T Consensus 147 v~f~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt 225 (482)
T PLN03007 147 LVFHGTGYFSLCASYCIRVHKPQK-KVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNS 225 (482)
T ss_pred EEeecccHHHHHHHHHHHhccccc-ccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEEC
Confidence 211111100000000000000000 0000 00 00000 0000000 000 001112344577899999
Q ss_pred CccccCC-c----C-CCCceEEeCccccCCC---------CC---CChhhHhhhhcC-CCceEEEecCCcccCCcccHHH
Q psy15582 231 SWLLTYP-R----P-VFPNTILLGPIHLNNP---------KP---LPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDK 291 (477)
Q Consensus 231 ~~~l~~~-~----~-~~~~~~~vG~~~~~~~---------~~---~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~~~~ 291 (477)
+++++.+ . + ....++.|||+..... .. .++++.+|++++ .+++|||||||+.. ++.+.
T Consensus 226 ~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~---~~~~~ 302 (482)
T PLN03007 226 FYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVAS---FKNEQ 302 (482)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcC---CCHHH
Confidence 9888875 2 1 2246899999754221 01 135688999987 68899999999976 57889
Q ss_pred HHHHHHHHhhCCCceEEEEecCCC--------CCC------CCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHH
Q psy15582 292 RKAIVDSFKQFPRHRIIWKWEEDI--------LPD------LPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIH 357 (477)
Q Consensus 292 ~~~i~~al~~~~~~~~l~~~~~~~--------~~~------~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~ 357 (477)
+.+++++++..+ ++|||+++... +++ .+.|+++.+|+||.++|.|+++++||||||+||++||++
T Consensus 303 ~~~~~~~l~~~~-~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~ 381 (482)
T PLN03007 303 LFEIAAGLEGSG-QNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVA 381 (482)
T ss_pred HHHHHHHHHHCC-CCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHH
Confidence 999999999999 99999988521 111 245889999999999999999999999999999999999
Q ss_pred hCCcEEeccCCcchHHHHHHHH---HcCceEEc------cCCCCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhcC
Q psy15582 358 FGVPMIGIPFFADQDTNVRKLE---SMDVARFL------EYENITAETLVTLMKSILYNE---TVYRKSQVYSKLSNTQ 424 (477)
Q Consensus 358 ~GvP~i~~P~~~dQ~~na~~~~---~~G~g~~l------~~~~~~~~~l~~al~~ll~~~---~~~~~a~~~~~~~~~~ 424 (477)
+|||||++|+++||+.||++++ +.|+|+.. +...++.+++.+++++++.++ +||++++++++..+..
T Consensus 382 ~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a 460 (482)
T PLN03007 382 AGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAA 460 (482)
T ss_pred cCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999886 45555532 334579999999999999887 8999999999987643
No 11
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4e-38 Score=319.17 Aligned_cols=218 Identities=22% Similarity=0.394 Sum_probs=177.2
Q ss_pred ccccEEEEecCccccCC-----c---CCCCceEEeCcc-ccCCC-----CCCChhhHhhhhcC-CCceEEEecCCcccCC
Q psy15582 221 ENKTLLFISTSWLLTYP-----R---PVFPNTILLGPI-HLNNP-----KPLPQNLKDWIEGA-KDGVIYFSLGTNMQSA 285 (477)
Q Consensus 221 ~~~~~~l~~s~~~l~~~-----~---~~~~~~~~vG~~-~~~~~-----~~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~ 285 (477)
..++.+++|+..+++.. . ...|+++.|||+ +.... ...++++.+|++++ .+++|||||||+..
T Consensus 209 ~~~~gvlvNt~~eLe~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~-- 286 (481)
T PLN02554 209 REMKGILVNTVAELEPQALKFFSGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGG-- 286 (481)
T ss_pred ccCCEEEEechHHHhHHHHHHHHhcccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEecccccc--
Confidence 45778999999998863 1 134689999999 33322 23556899999997 56799999999866
Q ss_pred cccHHHHHHHHHHHhhCCCceEEEEecCCC-----------------CC-C----CCCCeEEeecCChhhhhcCCCceEE
Q psy15582 286 SLQEDKRKAIVDSFKQFPRHRIIWKWEEDI-----------------LP-D----LPSNVICRKWLPQHDILAHPKVKLF 343 (477)
Q Consensus 286 ~~~~~~~~~i~~al~~~~~~~~l~~~~~~~-----------------~~-~----~~~nv~i~~~vp~~~lL~h~~~~~~ 343 (477)
++.+.+++++.+++..+ .+|||++++.. ++ + .++|+++.+|+||.++|.||++++|
T Consensus 287 -~~~~~~~~la~~l~~~~-~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~F 364 (481)
T PLN02554 287 -FSEEQAREIAIALERSG-HRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGF 364 (481)
T ss_pred -CCHHHHHHHHHHHHHcC-CCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcc
Confidence 68899999999999999 99999997521 01 1 3457788999999999999999999
Q ss_pred EEcCChhHHHHHHHhCCcEEeccCCcchHHHH-HHHHHcCceEEccC-----------CCCCHHHHHHHHHHHhc-CHHH
Q psy15582 344 IMQGGLQSSQEAIHFGVPMIGIPFFADQDTNV-RKLESMDVARFLEY-----------ENITAETLVTLMKSILY-NETV 410 (477)
Q Consensus 344 I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na-~~~~~~G~g~~l~~-----------~~~~~~~l~~al~~ll~-~~~~ 410 (477)
|||||+||+.||+++|||||++|+++||+.|| .+++++|+|+.++. ..++.+++.++|+++|+ |++|
T Consensus 365 vtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~ 444 (481)
T PLN02554 365 VTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDV 444 (481)
T ss_pred cccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999 45788999999863 35799999999999996 7999
Q ss_pred HHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHh
Q psy15582 411 YRKSQVYSKLSNTQ---MMSPKDTAVWWIEYVLKA 442 (477)
Q Consensus 411 ~~~a~~~~~~~~~~---~~~~~~~a~~~ie~~~~~ 442 (477)
|+||++++++++.. ..+......++|+.+.++
T Consensus 445 r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 445 RKRVKEMSEKCHVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Confidence 99999999998742 123334555666665543
No 12
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.5e-37 Score=310.71 Aligned_cols=198 Identities=24% Similarity=0.412 Sum_probs=168.2
Q ss_pred ccccEEEEecCccccCC-----cC-CCCceEEeCccccCCC--CCCC---hhhHhhhhcC-CCceEEEecCCcccCCccc
Q psy15582 221 ENKTLLFISTSWLLTYP-----RP-VFPNTILLGPIHLNNP--KPLP---QNLKDWIEGA-KDGVIYFSLGTNMQSASLQ 288 (477)
Q Consensus 221 ~~~~~~l~~s~~~l~~~-----~~-~~~~~~~vG~~~~~~~--~~~~---~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~ 288 (477)
..++.+++||+++||.. +. ..++++.|||++.... ..++ ++..+|++++ .+++|||||||... ++
T Consensus 202 ~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~---~~ 278 (451)
T PLN02410 202 RTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLAL---ME 278 (451)
T ss_pred ccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEcccccc---CC
Confidence 35778999999999975 22 3468999999976431 2222 2457899997 67899999999987 78
Q ss_pred HHHHHHHHHHHhhCCCceEEEEecCCC---------CC-----CCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHH
Q psy15582 289 EDKRKAIVDSFKQFPRHRIIWKWEEDI---------LP-----DLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQE 354 (477)
Q Consensus 289 ~~~~~~i~~al~~~~~~~~l~~~~~~~---------~~-----~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~E 354 (477)
.+.+++++.+|+..+ .+|||+++... ++ ..++|..+.+|+||.++|.|+++++||||||+||+.|
T Consensus 279 ~~q~~ela~gLe~s~-~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~E 357 (451)
T PLN02410 279 INEVMETASGLDSSN-QQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLE 357 (451)
T ss_pred HHHHHHHHHHHHhcC-CCeEEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHH
Confidence 999999999999999 89999997321 11 1347789999999999999999999999999999999
Q ss_pred HHHhCCcEEeccCCcchHHHHHHHHHc-CceEEccCCCCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhc
Q psy15582 355 AIHFGVPMIGIPFFADQDTNVRKLESM-DVARFLEYENITAETLVTLMKSILYNE---TVYRKSQVYSKLSNT 423 (477)
Q Consensus 355 al~~GvP~i~~P~~~dQ~~na~~~~~~-G~g~~l~~~~~~~~~l~~al~~ll~~~---~~~~~a~~~~~~~~~ 423 (477)
|+++|||||++|+++||+.||+++++. |+|+.+. +.++.+++.++|++++.++ ++++++++++++++.
T Consensus 358 a~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~ 429 (451)
T PLN02410 358 SIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRA 429 (451)
T ss_pred HHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876 9999997 6789999999999999764 799999999888874
No 13
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=3.9e-38 Score=314.41 Aligned_cols=377 Identities=18% Similarity=0.227 Sum_probs=244.4
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCC-------CCCeeEEEcccchhhchhhhcccccCccc
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEP-------PVNYTDIDLSFSYKYFKPQLQKGEVLPDA 101 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (477)
..+|++ +|+++.||++|++.||+.|+++|++|||+++...... ..++.+..++. +. ... ++. . .
T Consensus 4 ~~HVvl-vPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~l-P~-~dG-LP~----g-~ 74 (446)
T PLN00414 4 KFHAFM-YPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTL-PP-VDG-LPF----G-A 74 (446)
T ss_pred CCEEEE-ecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecC-CC-cCC-CCC----c-c
Confidence 357777 8999999999999999999999999999998432211 11345533321 00 011 111 0 0
Q ss_pred cccccccchhHHHHhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCccEEEEcCccccc-----ccCccC-CCCCCCCCC
Q psy15582 102 VDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTA-----YLGFLP-KLGYTQSMT 175 (477)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pDliI~d~~~~~~-----~~g~iP-~~~~~~~~~ 175 (477)
+ ....+... .. .........+. +.+.+.+ +..+||+||+|. +.|. .+| || ..-++....
T Consensus 75 e-~~~~l~~~---~~--~~~~~a~~~l~--~~l~~~L-----~~~~p~cVV~D~-~~wa~~vA~~lg-IP~~~F~~~~a~ 139 (446)
T PLN00414 75 E-TASDLPNS---TK--KPIFDAMDLLR--DQIEAKV-----RALKPDLIFFDF-VHWVPEMAKEFG-IKSVNYQIISAA 139 (446)
T ss_pred c-ccccchhh---HH--HHHHHHHHHHH--HHHHHHH-----hcCCCeEEEECC-chhHHHHHHHhC-CCEEEEecHHHH
Confidence 0 00011000 00 11122222111 4456666 566899999996 5666 566 66 110000000
Q ss_pred HHHHHHHHHHH-------H--------HHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHhhccccEEEEecCccccCC---
Q psy15582 176 LMERMNNLFMQ-------L--------YSKFYIRSRLMKKQDEIMERYFGTRGLSGKQLEENKTLLFISTSWLLTYP--- 237 (477)
Q Consensus 176 ~~~r~~n~~~~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~--- 237 (477)
...-..+.... . ....-....+.+ ....+.+. .+....++.+++||+.+||..
T Consensus 140 ~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~vlvNTf~eLE~~~~~ 210 (446)
T PLN00414 140 CVAMVLAPRAELGFPPPDYPLSKVALRGHDANVCSLFAN-SHELFGLI--------TKGLKNCDVVSIRTCVELEGNLCD 210 (446)
T ss_pred HHHHHhCcHhhcCCCCCCCCCCcCcCchhhcccchhhcc-cHHHHHHH--------HHhhccCCEEEEechHHHHHHHHH
Confidence 00000000000 0 000000000000 00000000 012345788999999999975
Q ss_pred --cC-CCCceEEeCccccCCCC----CCChhhHhhhhcC-CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEE
Q psy15582 238 --RP-VFPNTILLGPIHLNNPK----PLPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIW 309 (477)
Q Consensus 238 --~~-~~~~~~~vG~~~~~~~~----~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~ 309 (477)
+. ..+.++.|||+...... ...+++.+|||++ .+++|||||||... ++.+.+.+++..|+..+ ..|+|
T Consensus 211 ~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~---~~~~q~~e~a~gL~~s~-~~Flw 286 (446)
T PLN00414 211 FIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFF---FEKDQFQEFCLGMELTG-LPFLI 286 (446)
T ss_pred HHHHhcCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeeccccc---CCHHHHHHHHHHHHHcC-CCeEE
Confidence 22 24578999999643311 1124578999998 78999999999987 67899999999999988 99999
Q ss_pred EecCC----C-CCCCCCC---------eEEeecCChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcchHHHH
Q psy15582 310 KWEED----I-LPDLPSN---------VICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNV 375 (477)
Q Consensus 310 ~~~~~----~-~~~~~~n---------v~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na 375 (477)
++... . ...+|+| ..+.+|+||.++|.|+++++||||||+||++||+++|||+|++|+++||+.||
T Consensus 287 vvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na 366 (446)
T PLN00414 287 AVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLIT 366 (446)
T ss_pred EEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHH
Confidence 88642 1 1134444 45669999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HcCceEEccCC---CCCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHhCC
Q psy15582 376 RKLE-SMDVARFLEYE---NITAETLVTLMKSILYNE-----TVYRKSQVYSKLSNTQMMSP-KDTAVWWIEYVLKAEG 444 (477)
Q Consensus 376 ~~~~-~~G~g~~l~~~---~~~~~~l~~al~~ll~~~-----~~~~~a~~~~~~~~~~~~~~-~~~a~~~ie~~~~~~~ 444 (477)
++++ +.|+|+.+..+ .++.+++.++++++|.++ .+|++++++++.+.+. +| .....++|+.+....+
T Consensus 367 ~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~--gg~ss~l~~~v~~~~~~~~ 443 (446)
T PLN00414 367 RLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSP--GLLSGYADKFVEALENEVN 443 (446)
T ss_pred HHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhcc
Confidence 9995 68999999643 389999999999999764 3899999999998663 44 5556777777766554
No 14
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=3.8e-38 Score=316.16 Aligned_cols=360 Identities=15% Similarity=0.270 Sum_probs=232.2
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHH--HHhCCCEEEEEeecCCCCC----CCCeeEEEcccchhhchhhhcccccCccc
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKE--LVRRGHTVTMIGTDPLKEP----PVNYTDIDLSFSYKYFKPQLQKGEVLPDA 101 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~--L~~rGH~V~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (477)
+..+|++ +|+++.||++|++.||+. |++||+.|||+++...... ......+.++..++ . ++. . .
T Consensus 7 ~~~hvv~-~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~---g-lp~----~-~ 76 (456)
T PLN02210 7 QETHVLM-VTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSD---G-LPK----D-D 76 (456)
T ss_pred CCCEEEE-eCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCC---C-CCC----C-c
Confidence 3457888 899999999999999999 5699999999999543211 11112222221111 1 111 0 0
Q ss_pred cccccccchhHHHHhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCccEEEEcCccccc-----ccCccC-CCCCCCCCC
Q psy15582 102 VDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTA-----YLGFLP-KLGYTQSMT 175 (477)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pDliI~d~~~~~~-----~~g~iP-~~~~~~~~~ 175 (477)
. ..... +. ......+ .+.+.+.+ ++.+||+||+|.++.|+ .+| || ..-+.....
T Consensus 77 ~------~~~~~-~~--~~~~~~~-----~~~l~~~l-----~~~~~~~vI~D~~~~w~~~vA~~lg-IP~~~f~~~sa~ 136 (456)
T PLN02210 77 P------RAPET-LL--KSLNKVG-----AKNLSKII-----EEKRYSCIISSPFTPWVPAVAAAHN-IPCAILWIQACG 136 (456)
T ss_pred c------cCHHH-HH--HHHHHhh-----hHHHHHHH-----hcCCCcEEEECCcchhHHHHHHHhC-CCEEEEecccHH
Confidence 0 00001 11 2222222 24566777 56689999999997777 566 77 111111111
Q ss_pred HHHHHHHHHHH--HHHHHHH--HHHh-hHHHH-----H---HHHHHcCCCCCC-HHH---hhccccEEEEecCccccCC-
Q psy15582 176 LMERMNNLFMQ--LYSKFYI--RSRL-MKKQD-----E---IMERYFGTRGLS-GKQ---LEENKTLLFISTSWLLTYP- 237 (477)
Q Consensus 176 ~~~r~~n~~~~--~~~~~~~--~~~~-~~~~~-----~---~~~~~~~~~~~~-~~~---~~~~~~~~l~~s~~~l~~~- 237 (477)
...-..+.... .... .. .... .+.+. . .+....+..... ..+ ....++.+++||+.+++..
T Consensus 137 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 215 (456)
T PLN02210 137 AYSVYYRYYMKTNSFPD-LEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEI 215 (456)
T ss_pred HHHHHHhhhhccCCCCc-ccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHH
Confidence 00000000000 0000 00 0000 00000 0 000000000000 001 1234678999999998865
Q ss_pred ----cCCCCceEEeCccccC----C-CC-----------CCChhhHhhhhcC-CCceEEEecCCcccCCcccHHHHHHHH
Q psy15582 238 ----RPVFPNTILLGPIHLN----N-PK-----------PLPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDKRKAIV 296 (477)
Q Consensus 238 ----~~~~~~~~~vG~~~~~----~-~~-----------~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~~~~~~~i~ 296 (477)
+.. ++++.|||+... . .. ..++++.+|++++ .+++|||||||... .+.+.+++++
T Consensus 216 ~~~l~~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~---~~~~~~~e~a 291 (456)
T PLN02210 216 IESMADL-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLE---SLENQVETIA 291 (456)
T ss_pred HHHHhhc-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEeccccc---CCHHHHHHHH
Confidence 222 579999998641 1 10 1134567899886 57899999999887 5799999999
Q ss_pred HHHhhCCCceEEEEecCCCC----C---CC--CCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEEeccC
Q psy15582 297 DSFKQFPRHRIIWKWEEDIL----P---DL--PSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPF 367 (477)
Q Consensus 297 ~al~~~~~~~~l~~~~~~~~----~---~~--~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~ 367 (477)
.+++..+ .+|||+++.+.. . +. +++..+.+|+||.++|.|+++++||||||+||+.||+++|||+|++|+
T Consensus 292 ~~l~~~~-~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~ 370 (456)
T PLN02210 292 KALKNRG-VPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPS 370 (456)
T ss_pred HHHHhCC-CCEEEEEeCCccccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEeccc
Confidence 9999999 999999874311 1 11 355678899999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHH-cCceEEccC----CCCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhc
Q psy15582 368 FADQDTNVRKLES-MDVARFLEY----ENITAETLVTLMKSILYNE---TVYRKSQVYSKLSNT 423 (477)
Q Consensus 368 ~~dQ~~na~~~~~-~G~g~~l~~----~~~~~~~l~~al~~ll~~~---~~~~~a~~~~~~~~~ 423 (477)
++||+.||+++++ .|+|+.+.. +.++.+++.++|++++.++ ++|+||+++++..+.
T Consensus 371 ~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~ 434 (456)
T PLN02210 371 WTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARL 434 (456)
T ss_pred ccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 9999999999998 899999863 2589999999999999775 499999999887654
No 15
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-38 Score=313.61 Aligned_cols=215 Identities=24% Similarity=0.364 Sum_probs=179.6
Q ss_pred HHHhhccccEEEEecCccccCC-cCCCCceEEeCccccCCCCCCChhhHhhhhcCCCceEEEecCCcccCCcccHHHHHH
Q psy15582 216 GKQLEENKTLLFISTSWLLTYP-RPVFPNTILLGPIHLNNPKPLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKA 294 (477)
Q Consensus 216 ~~~~~~~~~~~l~~s~~~l~~~-~~~~~~~~~vG~~~~~~~~~~~~~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~ 294 (477)
............+...+....+ +..|....++||+........+. |... ++++||+++||... . .++++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~-d~~~vyvslGt~~~---~-~~l~~~ 256 (406)
T COG1819 186 IRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIGPLLGEAANELPY----WIPA-DRPIVYVSLGTVGN---A-VELLAI 256 (406)
T ss_pred hHHHhcCCCCccccccccccCCCCCCCCCcCccccccccccccCcc----hhcC-CCCeEEEEcCCccc---H-HHHHHH
Confidence 3444333333333333333333 45666777888887765444443 3344 79999999999987 2 899999
Q ss_pred HHHHHhhCCCceEEEEecCCC--CCCCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcchH
Q psy15582 295 IVDSFKQFPRHRIIWKWEEDI--LPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQD 372 (477)
Q Consensus 295 i~~al~~~~~~~~l~~~~~~~--~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~ 372 (477)
+++++.+++ .++|+..++.+ ....|+|+++.+|+||..++ +++++||||||+||+.|||++|||+|++|...||+
T Consensus 257 ~~~a~~~l~-~~vi~~~~~~~~~~~~~p~n~~v~~~~p~~~~l--~~ad~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~ 333 (406)
T COG1819 257 VLEALADLD-VRVIVSLGGARDTLVNVPDNVIVADYVPQLELL--PRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQP 333 (406)
T ss_pred HHHHHhcCC-cEEEEeccccccccccCCCceEEecCCCHHHHh--hhcCEEEecCCcchHHHHHHcCCCEEEecCCcchh
Confidence 999999999 99999887733 34789999999999999999 67999999999999999999999999999999999
Q ss_pred HHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q psy15582 373 TNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVLKAEG 444 (477)
Q Consensus 373 ~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~~~~ 444 (477)
.||.++++.|+|+.++.+.++++.+.++|+++|+|+.|+++++++++.++.+ .|.+.++++||...+.+.
T Consensus 334 ~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~--~g~~~~a~~le~~~~~~~ 403 (406)
T COG1819 334 LNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAERLAEEFKEE--DGPAKAADLLEEFAREKK 403 (406)
T ss_pred HHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc--ccHHHHHHHHHHHHhccc
Confidence 9999999999999999989999999999999999999999999999999984 889999999999888754
No 16
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-37 Score=308.62 Aligned_cols=223 Identities=20% Similarity=0.297 Sum_probs=182.3
Q ss_pred ccccEEEEecCccccCC-----cC-CCCceEEeCccccCCC--CCCChhhHhhhhcC-CCceEEEecCCcccCCcccHHH
Q psy15582 221 ENKTLLFISTSWLLTYP-----RP-VFPNTILLGPIHLNNP--KPLPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDK 291 (477)
Q Consensus 221 ~~~~~~l~~s~~~l~~~-----~~-~~~~~~~vG~~~~~~~--~~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~~~~ 291 (477)
..++.+++||++++|.. +. ..++++.|||+..... ....+++.+|||++ .+++|||||||... ++.+.
T Consensus 198 ~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~---~~~~q 274 (453)
T PLN02764 198 MNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQVI---LEKDQ 274 (453)
T ss_pred ccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCccccccchhHHHHHHhCCCCCceEEEeeccccc---CCHHH
Confidence 45778999999999965 22 2357999999965331 12345788999998 88999999999987 68999
Q ss_pred HHHHHHHHhhCCCceEEEEecCCC-----CCCCCC---------CeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHH
Q psy15582 292 RKAIVDSFKQFPRHRIIWKWEEDI-----LPDLPS---------NVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIH 357 (477)
Q Consensus 292 ~~~i~~al~~~~~~~~l~~~~~~~-----~~~~~~---------nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~ 357 (477)
+.+++.+|+..+ ..|+|+++... ...+|+ ++.+.+|+||.++|.|+++++||||||+||+.||++
T Consensus 275 ~~ela~gL~~s~-~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~ 353 (453)
T PLN02764 275 FQELCLGMELTG-SPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLL 353 (453)
T ss_pred HHHHHHHHHhCC-CCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHH
Confidence 999999999888 99999997421 112443 456779999999999999999999999999999999
Q ss_pred hCCcEEeccCCcchHHHHHHHH-HcCceEEccCC---CCCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHhhcCCCCh
Q psy15582 358 FGVPMIGIPFFADQDTNVRKLE-SMDVARFLEYE---NITAETLVTLMKSILYNE-----TVYRKSQVYSKLSNTQMMSP 428 (477)
Q Consensus 358 ~GvP~i~~P~~~dQ~~na~~~~-~~G~g~~l~~~---~~~~~~l~~al~~ll~~~-----~~~~~a~~~~~~~~~~~~~~ 428 (477)
+|||+|++|+++||+.||++++ ..|+|+.+..+ .++.+++.++++++++++ .+|+++++++++++.. .+.
T Consensus 354 ~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~-GSS 432 (453)
T PLN02764 354 SDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASP-GLL 432 (453)
T ss_pred cCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhc-CCH
Confidence 9999999999999999999996 58999887543 479999999999999763 3999999999999765 566
Q ss_pred HHHHHHHHHHHHHhCCCCCC
Q psy15582 429 KDTAVWWIEYVLKAEGNVDH 448 (477)
Q Consensus 429 ~~~a~~~ie~~~~~~~~~~~ 448 (477)
.....++|+.+.+..+...|
T Consensus 433 ~~~l~~lv~~~~~~~~~~~~ 452 (453)
T PLN02764 433 TGYVDNFIESLQDLVSGTSH 452 (453)
T ss_pred HHHHHHHHHHHHHhcccccC
Confidence 67777788888776653444
No 17
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.7e-37 Score=310.99 Aligned_cols=218 Identities=20% Similarity=0.297 Sum_probs=175.0
Q ss_pred cccEEEEecCccccCC-----cC-CC-CceEEeCccccCCC---------C--C-CChhhHhhhhcC-CCceEEEecCCc
Q psy15582 222 NKTLLFISTSWLLTYP-----RP-VF-PNTILLGPIHLNNP---------K--P-LPQNLKDWIEGA-KDGVIYFSLGTN 281 (477)
Q Consensus 222 ~~~~~l~~s~~~l~~~-----~~-~~-~~~~~vG~~~~~~~---------~--~-~~~~l~~~l~~~-~~~~V~vs~Gs~ 281 (477)
.++.+++||++++|.. +. +. ++++.|||+..... . . .++++.+|++++ .+++|||||||.
T Consensus 214 ~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~ 293 (477)
T PLN02863 214 ASWGLVVNSFTELEGIYLEHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQ 293 (477)
T ss_pred cCCEEEEecHHHHHHHHHHHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeece
Confidence 4567999999999975 22 22 57999999964321 0 0 135788999997 578999999999
Q ss_pred ccCCcccHHHHHHHHHHHhhCCCceEEEEecCCC-----CCCCC---------CCeEEeecCChhhhhcCCCceEEEEcC
Q psy15582 282 MQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI-----LPDLP---------SNVICRKWLPQHDILAHPKVKLFIMQG 347 (477)
Q Consensus 282 ~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~-----~~~~~---------~nv~i~~~vp~~~lL~h~~~~~~I~hg 347 (477)
.. ++.+.+++++.+|+..+ ..|||+++... ...+| .|+++.+|+||.++|.|+++++|||||
T Consensus 294 ~~---~~~~~~~ela~gL~~~~-~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~ 369 (477)
T PLN02863 294 VV---LTKEQMEALASGLEKSG-VHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHC 369 (477)
T ss_pred ec---CCHHHHHHHHHHHHhCC-CcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecC
Confidence 87 67899999999999999 99999997421 11233 357888999999999999999999999
Q ss_pred ChhHHHHHHHhCCcEEeccCCcchHHHHHHHH-HcCceEEccCC---CCCHHHHHHHHHHHh-cCHHHHHHHHHHHHHhh
Q psy15582 348 GLQSSQEAIHFGVPMIGIPFFADQDTNVRKLE-SMDVARFLEYE---NITAETLVTLMKSIL-YNETVYRKSQVYSKLSN 422 (477)
Q Consensus 348 G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~-~~G~g~~l~~~---~~~~~~l~~al~~ll-~~~~~~~~a~~~~~~~~ 422 (477)
|+||++||+++|||+|++|+++||+.||++++ +.|+|+.+..+ ..+.+++.+++++++ ++++||+||++++++.+
T Consensus 370 G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~ 449 (477)
T PLN02863 370 GWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAAL 449 (477)
T ss_pred CchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999975 57999998532 358899999999988 67899999999998754
Q ss_pred cC---CCChHHHHHHHHHHHHHhC
Q psy15582 423 TQ---MMSPKDTAVWWIEYVLKAE 443 (477)
Q Consensus 423 ~~---~~~~~~~a~~~ie~~~~~~ 443 (477)
.. ..+......++|+.+.+.+
T Consensus 450 ~Av~~gGSS~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 450 DAIKERGSSVKDLDGFVKHVVELG 473 (477)
T ss_pred HHhccCCcHHHHHHHHHHHHHHhc
Confidence 32 1344566666677665553
No 18
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9.1e-38 Score=315.44 Aligned_cols=364 Identities=18% Similarity=0.244 Sum_probs=236.6
Q ss_pred ccccccEEEEcCCCCCCcHHHHHHHHHHHHhC--CCEEEEEeecCCCC--C----CCCeeEEEcccchhhchhhhccccc
Q psy15582 26 TVESANVLIICPTPSYSHQVPFIAIGKELVRR--GHTVTMIGTDPLKE--P----PVNYTDIDLSFSYKYFKPQLQKGEV 97 (477)
Q Consensus 26 ~~~~~kIL~~~~~~~~GH~~~~l~la~~L~~r--GH~V~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (477)
.....||++ +|+++.||++|++.||++|+.| ||+||++++..... . ..+++++.++.. .... ..
T Consensus 7 ~~~~~hVvl-vp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~--~p~~-~~---- 78 (459)
T PLN02448 7 PTTSCHVVA-MPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNV--IPSE-LV---- 78 (459)
T ss_pred CCCCcEEEE-ECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCC--CCCc-cc----
Confidence 345678888 8999999999999999999999 99999999954321 1 136788777631 0010 00
Q ss_pred CccccccccccchhHHHHhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCccEEEEcCccccc-----ccCccC-CCCCC
Q psy15582 98 LPDAVDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTA-----YLGFLP-KLGYT 171 (477)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pDliI~d~~~~~~-----~~g~iP-~~~~~ 171 (477)
. . .. ... +. ......+. +.+.++++.+ . .++|+||+|.+..|+ .+| || ..-++
T Consensus 79 ----~-~-~~---~~~-~~--~~~~~~~~-----~~~~~~l~~~--~-~~~~~VI~D~~~~wa~~vA~~lg-IP~v~f~~ 137 (459)
T PLN02448 79 ----R-A-AD---FPG-FL--EAVMTKME-----APFEQLLDRL--E-PPVTAIVADTYLFWAVGVGNRRN-IPVASLWT 137 (459)
T ss_pred ----c-c-cC---HHH-HH--HHHHHHhH-----HHHHHHHHhc--C-CCcEEEEECCccHHHHHHHHHhC-CCeEEEEh
Confidence 0 0 00 101 11 11111111 2344555211 2 468999999987776 556 77 11111
Q ss_pred CCCCHHHHHHHHHHHHHHH-HHHHHH-------h--hHHHHHH----HHHHcCCCCCC----HHH---hhccccEEEEec
Q psy15582 172 QSMTLMERMNNLFMQLYSK-FYIRSR-------L--MKKQDEI----MERYFGTRGLS----GKQ---LEENKTLLFIST 230 (477)
Q Consensus 172 ~~~~~~~r~~n~~~~~~~~-~~~~~~-------~--~~~~~~~----~~~~~~~~~~~----~~~---~~~~~~~~l~~s 230 (477)
..........+ +...... ...... . .+..... +.......... ..+ ....++.+++||
T Consensus 138 ~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNT 216 (459)
T PLN02448 138 MSATFFSVFYH-FDLLPQNGHFPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTS 216 (459)
T ss_pred HHHHHHHHHHH-hhhhhhccCCCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEcc
Confidence 11100000000 0000000 000000 0 0000000 00000000000 001 113457899999
Q ss_pred CccccCC-----cC-CCCceEEeCccccCCC-----C-----CCChhhHhhhhcC-CCceEEEecCCcccCCcccHHHHH
Q psy15582 231 SWLLTYP-----RP-VFPNTILLGPIHLNNP-----K-----PLPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDKRK 293 (477)
Q Consensus 231 ~~~l~~~-----~~-~~~~~~~vG~~~~~~~-----~-----~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~~~~~~ 293 (477)
.++||.. +. .++++..+||+..... . ..+.++.+|++.+ .+++|||||||... ++.+.++
T Consensus 217 f~eLE~~~~~~l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~---~~~~~~~ 293 (459)
T PLN02448 217 FYELEAQAIDALKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLS---VSSAQMD 293 (459)
T ss_pred HHHhhHHHHHHHHhhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeeccccc---CCHHHHH
Confidence 9999875 22 3457899999864210 0 1123688999886 67899999999976 5789999
Q ss_pred HHHHHHhhCCCceEEEEecCC--CCCC-CCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcc
Q psy15582 294 AIVDSFKQFPRHRIIWKWEED--ILPD-LPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFAD 370 (477)
Q Consensus 294 ~i~~al~~~~~~~~l~~~~~~--~~~~-~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~d 370 (477)
+++++++..+ ..|||+++++ ...+ .++|+.+.+|+||.++|.|+++++||||||+||+.||+++|||||++|+++|
T Consensus 294 ~~~~~l~~~~-~~~lw~~~~~~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~D 372 (459)
T PLN02448 294 EIAAGLRDSG-VRFLWVARGEASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWD 372 (459)
T ss_pred HHHHHHHhCC-CCEEEEEcCchhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEecccccc
Confidence 9999999999 9999987653 2222 2468999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH-cCceEEccC-----CCCCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHhhc
Q psy15582 371 QDTNVRKLES-MDVARFLEY-----ENITAETLVTLMKSILYNE-----TVYRKSQVYSKLSNT 423 (477)
Q Consensus 371 Q~~na~~~~~-~G~g~~l~~-----~~~~~~~l~~al~~ll~~~-----~~~~~a~~~~~~~~~ 423 (477)
|+.||+++++ .|+|+.+.. ..+++++|.++++++|.++ ++|++|++++++.+.
T Consensus 373 Q~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~ 436 (459)
T PLN02448 373 QPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRG 436 (459)
T ss_pred chhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999988 588887742 2469999999999999763 799999999987764
No 19
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=6.2e-37 Score=306.50 Aligned_cols=379 Identities=17% Similarity=0.237 Sum_probs=243.8
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHH-hCCCEEEEEeecCCCC-------CCCCeeEEEcccchhhchhhhcccccCccc
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELV-RRGHTVTMIGTDPLKE-------PPVNYTDIDLSFSYKYFKPQLQKGEVLPDA 101 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~-~rGH~V~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (477)
.+|++ +|+++.||++|++.||+.|+ .+|+.|||+++..... ...++.++.++. ++. .. ++.
T Consensus 6 pHVvl-~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~-p~~-~g-lp~------- 74 (481)
T PLN02992 6 PHAAM-FSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPS-PDI-SG-LVD------- 74 (481)
T ss_pred cEEEE-eCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCC-ccc-cC-CCC-------
Confidence 47777 89999999999999999998 7899999999953211 112466666553 111 11 110
Q ss_pred cccccccchhHHHHhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCccEEEEcCccccc-----ccCccC-CCCCCCCCC
Q psy15582 102 VDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTA-----YLGFLP-KLGYTQSMT 175 (477)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pDliI~d~~~~~~-----~~g~iP-~~~~~~~~~ 175 (477)
. .... ... +. . ... ...+.+.+.++. ...+|++||+|.++.|. .+| || ..-++....
T Consensus 75 ~-~~~~---~~~-~~--~----~~~--~~~~~~~~~l~~---~~~~p~cvV~D~f~~Wa~dVA~elg-IP~v~F~t~sA~ 137 (481)
T PLN02992 75 P-SAHV---VTK-IG--V----IMR--EAVPTLRSKIAE---MHQKPTALIVDLFGTDALCLGGEFN-MLTYIFIASNAR 137 (481)
T ss_pred C-CccH---HHH-HH--H----HHH--HhHHHHHHHHHh---cCCCCeEEEECCcchhHHHHHHHcC-CCEEEEecCcHH
Confidence 0 0000 000 11 1 111 111345566621 12378999999998777 566 77 111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHH------Hh--h--HHH--HHHHHHHcCCCCCCHH------HhhccccEEEEecCccccCC
Q psy15582 176 LMERMNNLFMQLYSKFYIRS------RL--M--KKQ--DEIMERYFGTRGLSGK------QLEENKTLLFISTSWLLTYP 237 (477)
Q Consensus 176 ~~~r~~n~~~~~~~~~~~~~------~~--~--~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~l~~s~~~l~~~ 237 (477)
.. .....+... ....-.. .+ . +.+ ............+... .....++.+++||+++||..
T Consensus 138 ~~-~~~~~~~~~-~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 215 (481)
T PLN02992 138 FL-GVSIYYPTL-DKDIKEEHTVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPK 215 (481)
T ss_pred HH-HHHHhhhhh-ccccccccccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHH
Confidence 10 000000000 0000000 00 0 000 0000000000000000 11245778999999999974
Q ss_pred -----cC-------CCCceEEeCccccCC-CCCCChhhHhhhhcC-CCceEEEecCCcccCCcccHHHHHHHHHHHhhCC
Q psy15582 238 -----RP-------VFPNTILLGPIHLNN-PKPLPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFP 303 (477)
Q Consensus 238 -----~~-------~~~~~~~vG~~~~~~-~~~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~ 303 (477)
+. ..+.++.|||+.... .....+++.+||+++ .+.+|||||||... ++.+.+++++.+|+..+
T Consensus 216 ~l~~l~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~---l~~~q~~ela~gL~~s~ 292 (481)
T PLN02992 216 SLKSLQDPKLLGRVARVPVYPIGPLCRPIQSSKTDHPVLDWLNKQPNESVLYISFGSGGS---LSAKQLTELAWGLEMSQ 292 (481)
T ss_pred HHHHHhhccccccccCCceEEecCccCCcCCCcchHHHHHHHHcCCCCceEEEeeccccc---CCHHHHHHHHHHHHHcC
Confidence 11 024699999996532 222234688999987 67899999999976 89999999999999999
Q ss_pred CceEEEEecCC------------------C--CCCCCC---------CeEEeecCChhhhhcCCCceEEEEcCChhHHHH
Q psy15582 304 RHRIIWKWEED------------------I--LPDLPS---------NVICRKWLPQHDILAHPKVKLFIMQGGLQSSQE 354 (477)
Q Consensus 304 ~~~~l~~~~~~------------------~--~~~~~~---------nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~E 354 (477)
.+|||+++.. + ...+|+ ++.+.+|+||.++|.|+++++||||||+||+.|
T Consensus 293 -~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~E 371 (481)
T PLN02992 293 -QRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLE 371 (481)
T ss_pred -CCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHH
Confidence 8999999521 0 112455 489999999999999999999999999999999
Q ss_pred HHHhCCcEEeccCCcchHHHHHHH-HHcCceEEccCC--CCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhcCC---
Q psy15582 355 AIHFGVPMIGIPFFADQDTNVRKL-ESMDVARFLEYE--NITAETLVTLMKSILYN---ETVYRKSQVYSKLSNTQM--- 425 (477)
Q Consensus 355 al~~GvP~i~~P~~~dQ~~na~~~-~~~G~g~~l~~~--~~~~~~l~~al~~ll~~---~~~~~~a~~~~~~~~~~~--- 425 (477)
|+++|||||++|+++||+.||+++ +++|+|+.++.. .++.+++.++|++++.+ ..+++++++++++.+..-
T Consensus 372 al~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~ 451 (481)
T PLN02992 372 SVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSID 451 (481)
T ss_pred HHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999 589999999763 48999999999999976 478999998888776431
Q ss_pred --CChHHHHHHHHHHHHHh
Q psy15582 426 --MSPKDTAVWWIEYVLKA 442 (477)
Q Consensus 426 --~~~~~~a~~~ie~~~~~ 442 (477)
.+.-.....+|+.+.|.
T Consensus 452 ~GGSS~~~l~~~v~~~~~~ 470 (481)
T PLN02992 452 GGGVAHESLCRVTKECQRF 470 (481)
T ss_pred CCCchHHHHHHHHHHHHHH
Confidence 22334555555555443
No 20
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=4.5e-37 Score=306.00 Aligned_cols=199 Identities=20% Similarity=0.373 Sum_probs=168.7
Q ss_pred ccccEEEEecCccccCC-----cC-C-CCceEEeCccccCCC---CC--CChhhHhhhhcC-CCceEEEecCCcccCCcc
Q psy15582 221 ENKTLLFISTSWLLTYP-----RP-V-FPNTILLGPIHLNNP---KP--LPQNLKDWIEGA-KDGVIYFSLGTNMQSASL 287 (477)
Q Consensus 221 ~~~~~~l~~s~~~l~~~-----~~-~-~~~~~~vG~~~~~~~---~~--~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~ 287 (477)
..++.+++||++++|.. +. + .++++.|||+..... .. ...+..+||+++ .+++|||||||... +
T Consensus 207 ~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~---~ 283 (451)
T PLN03004 207 SKSSGIIINTFDALENRAIKAITEELCFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGL---F 283 (451)
T ss_pred cccCeeeeeeHHHhHHHHHHHHHhcCCCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEeccccc---C
Confidence 45678999999999974 12 2 257999999974321 11 123578999987 68999999999966 7
Q ss_pred cHHHHHHHHHHHhhCCCceEEEEecCCC--------CCC-CC---------CCeEEeecCChhhhhcCCCceEEEEcCCh
Q psy15582 288 QEDKRKAIVDSFKQFPRHRIIWKWEEDI--------LPD-LP---------SNVICRKWLPQHDILAHPKVKLFIMQGGL 349 (477)
Q Consensus 288 ~~~~~~~i~~al~~~~~~~~l~~~~~~~--------~~~-~~---------~nv~i~~~vp~~~lL~h~~~~~~I~hgG~ 349 (477)
+.+.+++++.+|+..+ .+|||+++.+. ... +| .|+.+.+|+||.++|.|+++++||||||+
T Consensus 284 ~~~q~~ela~gL~~s~-~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~ 362 (451)
T PLN03004 284 SKEQVIEIAVGLEKSG-QRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGW 362 (451)
T ss_pred CHHHHHHHHHHHHHCC-CCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcc
Confidence 8999999999999999 89999998531 122 44 68999999999999999999999999999
Q ss_pred hHHHHHHHhCCcEEeccCCcchHHHHHHHHH-cCceEEccCC---CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhc
Q psy15582 350 QSSQEAIHFGVPMIGIPFFADQDTNVRKLES-MDVARFLEYE---NITAETLVTLMKSILYNETVYRKSQVYSKLSNT 423 (477)
Q Consensus 350 ~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~-~G~g~~l~~~---~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~ 423 (477)
||+.||+++|||+|++|+++||+.||+++++ .|+|+.++.+ .++.+++.++|++++++++|++++++++++.+.
T Consensus 363 nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~ 440 (451)
T PLN03004 363 NSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAEL 440 (451)
T ss_pred hHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999975 6999999754 469999999999999999999999999887654
No 21
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.8e-36 Score=303.95 Aligned_cols=217 Identities=20% Similarity=0.334 Sum_probs=175.1
Q ss_pred ccccEEEEecCccccCC-----cCCCCceEEeCccccCC----C------CCCChhhHhhhhcC-CCceEEEecCCcccC
Q psy15582 221 ENKTLLFISTSWLLTYP-----RPVFPNTILLGPIHLNN----P------KPLPQNLKDWIEGA-KDGVIYFSLGTNMQS 284 (477)
Q Consensus 221 ~~~~~~l~~s~~~l~~~-----~~~~~~~~~vG~~~~~~----~------~~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~ 284 (477)
..++.+++||+++||.. +...| ++.+||+.... . ...++++.+|++++ .+++|||+|||+..
T Consensus 212 ~~a~~vlvNTf~eLE~~~~~~l~~~~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~- 289 (480)
T PLN02555 212 DKPFCILIDTFQELEKEIIDYMSKLCP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVY- 289 (480)
T ss_pred ccCCEEEEEchHHHhHHHHHHHhhCCC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccC-
Confidence 35678999999999975 12234 89999986431 0 12345788999997 46799999999886
Q ss_pred CcccHHHHHHHHHHHhhCCCceEEEEecCC---------CCC-----CCCCCeEEeecCChhhhhcCCCceEEEEcCChh
Q psy15582 285 ASLQEDKRKAIVDSFKQFPRHRIIWKWEED---------ILP-----DLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQ 350 (477)
Q Consensus 285 ~~~~~~~~~~i~~al~~~~~~~~l~~~~~~---------~~~-----~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~ 350 (477)
++.+.+.+++.+++..+ .+|||+++.. .++ ..++|..+.+|+||.++|.||++++||||||+|
T Consensus 290 --~~~~q~~ela~~l~~~~-~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~n 366 (480)
T PLN02555 290 --LKQEQIDEIAYGVLNSG-VSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWN 366 (480)
T ss_pred --CCHHHHHHHHHHHHhcC-CeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcc
Confidence 68999999999999999 8999998631 011 234688999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEeccCCcchHHHHHHHHHc-CceEEcc-----CCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHh
Q psy15582 351 SSQEAIHFGVPMIGIPFFADQDTNVRKLESM-DVARFLE-----YENITAETLVTLMKSILYN---ETVYRKSQVYSKLS 421 (477)
Q Consensus 351 s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~-G~g~~l~-----~~~~~~~~l~~al~~ll~~---~~~~~~a~~~~~~~ 421 (477)
|+.||+++|||||++|+++||+.||+++++. |+|+.+. .+.++.+++.++|++++.+ .++|+||++++++.
T Consensus 367 S~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a 446 (480)
T PLN02555 367 STMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEA 446 (480)
T ss_pred hHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999886 9999994 3357899999999999965 47999999999886
Q ss_pred hcCC---CChHHHHHHHHHHHHHh
Q psy15582 422 NTQM---MSPKDTAVWWIEYVLKA 442 (477)
Q Consensus 422 ~~~~---~~~~~~a~~~ie~~~~~ 442 (477)
+..- .+......++|+.+.+.
T Consensus 447 ~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 447 EAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHhc
Confidence 5321 23445666777776554
No 22
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.1e-36 Score=308.12 Aligned_cols=217 Identities=20% Similarity=0.373 Sum_probs=173.5
Q ss_pred ccccEEEEecCccccCC-----cCC---CCceEEeCccccCCC---CCCC----hhhHhhhhcC-CCceEEEecCCcccC
Q psy15582 221 ENKTLLFISTSWLLTYP-----RPV---FPNTILLGPIHLNNP---KPLP----QNLKDWIEGA-KDGVIYFSLGTNMQS 284 (477)
Q Consensus 221 ~~~~~~l~~s~~~l~~~-----~~~---~~~~~~vG~~~~~~~---~~~~----~~l~~~l~~~-~~~~V~vs~Gs~~~~ 284 (477)
..++.+++||++++|.. +.. .|+++.|||+..... ..++ +++.+|++++ .+++|||||||+..
T Consensus 214 ~~a~~vlvNTf~eLE~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~- 292 (475)
T PLN02167 214 PEAKGILVNSFTELEPNAFDYFSRLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGS- 292 (475)
T ss_pred cccCEeeeccHHHHHHHHHHHHHhhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeeccccc-
Confidence 45778999999999975 111 267999999976321 1222 5789999987 57899999999876
Q ss_pred CcccHHHHHHHHHHHhhCCCceEEEEecCCC------CCCCCCC--------eEEeecCChhhhhcCCCceEEEEcCChh
Q psy15582 285 ASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI------LPDLPSN--------VICRKWLPQHDILAHPKVKLFIMQGGLQ 350 (477)
Q Consensus 285 ~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~------~~~~~~n--------v~i~~~vp~~~lL~h~~~~~~I~hgG~~ 350 (477)
++.+.+++++.+++..+ .+|||+++.+. ...+|+| .++.+|+||.++|.|+++++||||||+|
T Consensus 293 --~~~~~~~ela~~l~~~~-~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~n 369 (475)
T PLN02167 293 --LPAPQIKEIAQALELVG-CRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWN 369 (475)
T ss_pred --CCHHHHHHHHHHHHhCC-CcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcc
Confidence 67899999999999999 99999987431 1124554 3678999999999999999999999999
Q ss_pred HHHHHHHhCCcEEeccCCcchHHHHHH-HHHcCceEEccCC-------CCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHh
Q psy15582 351 SSQEAIHFGVPMIGIPFFADQDTNVRK-LESMDVARFLEYE-------NITAETLVTLMKSILYNE-TVYRKSQVYSKLS 421 (477)
Q Consensus 351 s~~Eal~~GvP~i~~P~~~dQ~~na~~-~~~~G~g~~l~~~-------~~~~~~l~~al~~ll~~~-~~~~~a~~~~~~~ 421 (477)
|++||+++|||||++|+++||+.||++ ++++|+|+.+... .++.+++.++|+++|.++ .||++|+++++..
T Consensus 370 S~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~ 449 (475)
T PLN02167 370 SVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAA 449 (475)
T ss_pred cHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999976 7789999988632 469999999999999754 8999999999877
Q ss_pred hcCC---CChHHHHHHHHHHHHH
Q psy15582 422 NTQM---MSPKDTAVWWIEYVLK 441 (477)
Q Consensus 422 ~~~~---~~~~~~a~~~ie~~~~ 441 (477)
+..- .+......++|+.+.+
T Consensus 450 ~~av~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 450 RKAVMDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred HHHHhCCCcHHHHHHHHHHHHHh
Confidence 5321 2333455556665544
No 23
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.4e-36 Score=298.70 Aligned_cols=356 Identities=18% Similarity=0.271 Sum_probs=228.0
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC-----CCCCeeEEEcccchhhchhhhcccccCcccccc
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE-----PPVNYTDIDLSFSYKYFKPQLQKGEVLPDAVDN 104 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (477)
.+|++ +|+++.||++|++.+|+.|+.+|+.|||+++..... ...++.++.++. + ++. ...+ .
T Consensus 6 ~hvv~-~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipd--g-----lp~----~~~~-~ 72 (449)
T PLN02173 6 GHVLA-VPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISD--G-----YDQ----GGFS-S 72 (449)
T ss_pred cEEEE-ecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCC--C-----CCC----cccc-c
Confidence 36777 899999999999999999999999999999953211 123467766652 1 111 0000 0
Q ss_pred ccccchhHHHHhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCc-cEEEEcCccccc-----ccCccC-CCCCCCCCCHH
Q psy15582 105 QRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKF-DLIIYEGLLHTA-----YLGFLP-KLGYTQSMTLM 177 (477)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p-DliI~d~~~~~~-----~~g~iP-~~~~~~~~~~~ 177 (477)
..... . +. ......+. +.+.++|+.+. ...+| |+||+|.+..|. .+| || ..-++......
T Consensus 73 ~~~~~---~-~~--~~~~~~~~-----~~~~~~l~~~~-~~~~Pv~cvV~D~f~~Wa~dVA~elg-IP~v~F~~~~a~~~ 139 (449)
T PLN02173 73 AGSVP---E-YL--QNFKTFGS-----KTVADIIRKHQ-STDNPITCIVYDSFMPWALDLAREFG-LAAAPFFTQSCAVN 139 (449)
T ss_pred ccCHH---H-HH--HHHHHhhh-----HHHHHHHHHhh-ccCCCceEEEECCcchhHHHHHHHhC-CCEEEEechHHHHH
Confidence 00011 1 11 22222222 34455552110 12356 999999997777 566 77 11111111100
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc-----CC-CCCCHH-------HhhccccEEEEecCccccCC-----cC
Q psy15582 178 ERMNNLFMQLYSKFYIRSRLMKKQDEIMERYF-----GT-RGLSGK-------QLEENKTLLFISTSWLLTYP-----RP 239 (477)
Q Consensus 178 ~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~-------~~~~~~~~~l~~s~~~l~~~-----~~ 239 (477)
...... ..... - .....+.+.....+.+ .. ...... .....++.+++||++++|.. +.
T Consensus 140 -~~~~~~-~~~~~-~-~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 215 (449)
T PLN02173 140 -YINYLS-YINNG-S-LTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSK 215 (449)
T ss_pred -HHHHhH-HhccC-C-ccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHh
Confidence 000000 00000 0 0000000000000000 00 000000 11345778999999999965 22
Q ss_pred CCCceEEeCccccC--------CCC---------CCChhhHhhhhcC-CCceEEEecCCcccCCcccHHHHHHHHHHHhh
Q psy15582 240 VFPNTILLGPIHLN--------NPK---------PLPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQ 301 (477)
Q Consensus 240 ~~~~~~~vG~~~~~--------~~~---------~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~ 301 (477)
. ++++.|||+... ... ...+++.+|++++ .+++|||||||... ++.+.+++++.+|
T Consensus 216 ~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~---~~~~~~~ela~gL-- 289 (449)
T PLN02173 216 V-CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAK---LSSEQMEEIASAI-- 289 (449)
T ss_pred c-CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEeccccc---CCHHHHHHHHHHh--
Confidence 2 368899999632 000 1123477999987 56799999999886 7899999999999
Q ss_pred CCCceEEEEecCCC---CC-C----C-CCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcchH
Q psy15582 302 FPRHRIIWKWEEDI---LP-D----L-PSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQD 372 (477)
Q Consensus 302 ~~~~~~l~~~~~~~---~~-~----~-~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~ 372 (477)
.+ ..|+|++.... ++ + . ++|+.+.+|+||.++|.|+++.+||||||+||++||+++|||||++|+++||+
T Consensus 290 s~-~~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~ 368 (449)
T PLN02173 290 SN-FSYLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQP 368 (449)
T ss_pred cC-CCEEEEEeccchhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcch
Confidence 34 67999997421 21 1 1 57899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CceEEccCCC----CCHHHHHHHHHHHhcC---HHHHHHHHHHHHHhh
Q psy15582 373 TNVRKLESM-DVARFLEYEN----ITAETLVTLMKSILYN---ETVYRKSQVYSKLSN 422 (477)
Q Consensus 373 ~na~~~~~~-G~g~~l~~~~----~~~~~l~~al~~ll~~---~~~~~~a~~~~~~~~ 422 (477)
.||+++++. |+|+.+..++ ++.+++.+++++++.+ .++|++|++++++.+
T Consensus 369 ~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~ 426 (449)
T PLN02173 369 MNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAV 426 (449)
T ss_pred HHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 999999875 8888875322 5899999999999976 467889988888776
No 24
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.4e-35 Score=295.57 Aligned_cols=197 Identities=18% Similarity=0.370 Sum_probs=160.3
Q ss_pred ccEEEEecCccccCC--cCCC-CceEEeCccccCC----C---C-----CCChhhHhhhhcC-CCceEEEecCCcccCCc
Q psy15582 223 KTLLFISTSWLLTYP--RPVF-PNTILLGPIHLNN----P---K-----PLPQNLKDWIEGA-KDGVIYFSLGTNMQSAS 286 (477)
Q Consensus 223 ~~~~l~~s~~~l~~~--~~~~-~~~~~vG~~~~~~----~---~-----~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~ 286 (477)
++.+++||+++||.. ..+. ..++.|||+.... . . ....++.+|++++ .+++|||||||...
T Consensus 197 ~~~vlvNTf~eLE~~~~~~l~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~--- 273 (455)
T PLN02152 197 NPKILVNTFDSLEPEFLTAIPNIEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVE--- 273 (455)
T ss_pred CCEEEEeChHHhhHHHHHhhhcCCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEeccccc---
Confidence 458999999999975 1121 2589999996421 0 1 1123689999997 57999999999986
Q ss_pred ccHHHHHHHHHHHhhCCCceEEEEecCC---------C-------CCC----CCCCeEEeecCChhhhhcCCCceEEEEc
Q psy15582 287 LQEDKRKAIVDSFKQFPRHRIIWKWEED---------I-------LPD----LPSNVICRKWLPQHDILAHPKVKLFIMQ 346 (477)
Q Consensus 287 ~~~~~~~~i~~al~~~~~~~~l~~~~~~---------~-------~~~----~~~nv~i~~~vp~~~lL~h~~~~~~I~h 346 (477)
++.+.+++++.+|+..+ .+|||++++. . .++ .++|..+.+|+||.++|.|+++++||||
T Consensus 274 l~~~q~~ela~gL~~s~-~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH 352 (455)
T PLN02152 274 LSKKQIEELARALIEGK-RPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTH 352 (455)
T ss_pred CCHHHHHHHHHHHHHcC-CCeEEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEee
Confidence 79999999999999999 8999998742 0 011 4577789999999999999999999999
Q ss_pred CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHH-cCceEEc--cCCC-CCHHHHHHHHHHHhcCH--HHHHHHHHHHHH
Q psy15582 347 GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLES-MDVARFL--EYEN-ITAETLVTLMKSILYNE--TVYRKSQVYSKL 420 (477)
Q Consensus 347 gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~-~G~g~~l--~~~~-~~~~~l~~al~~ll~~~--~~~~~a~~~~~~ 420 (477)
||+||+.||+++|||+|++|+++||+.||+++++ .|+|+.+ +.++ ++.+++.++|+++++++ ++|+++++++++
T Consensus 353 ~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~ 432 (455)
T PLN02152 353 CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRL 432 (455)
T ss_pred CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988 3555554 3333 58999999999999765 489999888776
Q ss_pred hhc
Q psy15582 421 SNT 423 (477)
Q Consensus 421 ~~~ 423 (477)
.+.
T Consensus 433 ~~~ 435 (455)
T PLN02152 433 AIE 435 (455)
T ss_pred HHH
Confidence 654
No 25
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=5.7e-36 Score=302.37 Aligned_cols=217 Identities=21% Similarity=0.337 Sum_probs=170.7
Q ss_pred ccccEEEEecCccccCC-----cCC-------CCceEEeCccccCC--C--CCCChhhHhhhhcC-CCceEEEecCCccc
Q psy15582 221 ENKTLLFISTSWLLTYP-----RPV-------FPNTILLGPIHLNN--P--KPLPQNLKDWIEGA-KDGVIYFSLGTNMQ 283 (477)
Q Consensus 221 ~~~~~~l~~s~~~l~~~-----~~~-------~~~~~~vG~~~~~~--~--~~~~~~l~~~l~~~-~~~~V~vs~Gs~~~ 283 (477)
..++.+++||++++|.. +.. .++++.|||+.... . ...++++.+|++++ .+++|||||||...
T Consensus 205 ~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~ 284 (480)
T PLN00164 205 MEAAGIIVNTAAELEPGVLAAIADGRCTPGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGF 284 (480)
T ss_pred hhcCEEEEechHHhhHHHHHHHHhccccccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEeccccc
Confidence 45778999999999864 111 25799999997421 1 12345788999997 67899999999866
Q ss_pred CCcccHHHHHHHHHHHhhCCCceEEEEecCCCC------------CCCCCC---------eEEeecCChhhhhcCCCceE
Q psy15582 284 SASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL------------PDLPSN---------VICRKWLPQHDILAHPKVKL 342 (477)
Q Consensus 284 ~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~------------~~~~~n---------v~i~~~vp~~~lL~h~~~~~ 342 (477)
++.+.+++++.+|+..+ .+|||+++.... ..+|+| +.+.+|+||.++|.|+++.+
T Consensus 285 ---~~~~q~~ela~gL~~s~-~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~ 360 (480)
T PLN00164 285 ---FDAPQVREIAAGLERSG-HRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGG 360 (480)
T ss_pred ---CCHHHHHHHHHHHHHcC-CCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCe
Confidence 68889999999999999 899999974211 014444 67779999999999999999
Q ss_pred EEEcCChhHHHHHHHhCCcEEeccCCcchHHHHHHHH-HcCceEEccCC-----CCCHHHHHHHHHHHhcCH-----HHH
Q psy15582 343 FIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLE-SMDVARFLEYE-----NITAETLVTLMKSILYNE-----TVY 411 (477)
Q Consensus 343 ~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~-~~G~g~~l~~~-----~~~~~~l~~al~~ll~~~-----~~~ 411 (477)
||||||+||++||+++|||||++|+++||+.||++++ +.|+|+.+..+ .++.+++.++|+++|.++ .+|
T Consensus 361 fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r 440 (480)
T PLN00164 361 FVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAR 440 (480)
T ss_pred EEeecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHH
Confidence 9999999999999999999999999999999999874 58999988532 268999999999999753 478
Q ss_pred HHHHHHHHHhhcCC---CChHHHHHHHHHHHHH
Q psy15582 412 RKSQVYSKLSNTQM---MSPKDTAVWWIEYVLK 441 (477)
Q Consensus 412 ~~a~~~~~~~~~~~---~~~~~~a~~~ie~~~~ 441 (477)
++|++++++.+..- .+......++|+.+.+
T Consensus 441 ~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~ 473 (480)
T PLN00164 441 EKAAEMKAACRKAVEEGGSSYAALQRLAREIRH 473 (480)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 89988888776431 2333444555555543
No 26
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3.5e-36 Score=299.36 Aligned_cols=200 Identities=22% Similarity=0.351 Sum_probs=166.9
Q ss_pred ccccEEEEecCccccCC-----cCC-------CCceEEeCccccCCC-CCCChhhHhhhhcC-CCceEEEecCCcccCCc
Q psy15582 221 ENKTLLFISTSWLLTYP-----RPV-------FPNTILLGPIHLNNP-KPLPQNLKDWIEGA-KDGVIYFSLGTNMQSAS 286 (477)
Q Consensus 221 ~~~~~~l~~s~~~l~~~-----~~~-------~~~~~~vG~~~~~~~-~~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~ 286 (477)
..++.+++||+++||.. +.. .+.++.|||+..... ...++++.+||+++ .+++|||||||...
T Consensus 203 ~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~--- 279 (470)
T PLN03015 203 PMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYPIGPIVRTNVHVEKRNSIFEWLDKQGERSVVYVCLGSGGT--- 279 (470)
T ss_pred ccCCEEEEechHHHhHHHHHHHHhhcccccccCCceEEecCCCCCcccccchHHHHHHHHhCCCCCEEEEECCcCCc---
Confidence 45788999999999964 221 146999999974332 12234799999997 68999999999977
Q ss_pred ccHHHHHHHHHHHhhCCCceEEEEecCC------------CCC-CCCCC---------eEEeecCChhhhhcCCCceEEE
Q psy15582 287 LQEDKRKAIVDSFKQFPRHRIIWKWEED------------ILP-DLPSN---------VICRKWLPQHDILAHPKVKLFI 344 (477)
Q Consensus 287 ~~~~~~~~i~~al~~~~~~~~l~~~~~~------------~~~-~~~~n---------v~i~~~vp~~~lL~h~~~~~~I 344 (477)
++.+..++++.+|+..+ ..|||+++.. ... .+|+| +.+.+|+||.++|.|+++.+||
T Consensus 280 ~~~~q~~ela~gl~~s~-~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fv 358 (470)
T PLN03015 280 LTFEQTVELAWGLELSG-QRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFL 358 (470)
T ss_pred CCHHHHHHHHHHHHhCC-CcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEE
Confidence 79999999999999999 8999999631 111 35666 6788999999999999999999
Q ss_pred EcCChhHHHHHHHhCCcEEeccCCcchHHHHHHH-HHcCceEEcc----CCCCCHHHHHHHHHHHhc-----CHHHHHHH
Q psy15582 345 MQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKL-ESMDVARFLE----YENITAETLVTLMKSILY-----NETVYRKS 414 (477)
Q Consensus 345 ~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~-~~~G~g~~l~----~~~~~~~~l~~al~~ll~-----~~~~~~~a 414 (477)
||||+||+.||+++||||+++|+++||+.||+++ +..|+|+.+. .+.++.+++.++|++++. ..++|+||
T Consensus 359 tH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra 438 (470)
T PLN03015 359 SHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKA 438 (470)
T ss_pred ecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHH
Confidence 9999999999999999999999999999999998 6789999985 234799999999999994 25789999
Q ss_pred HHHHHHhhcC
Q psy15582 415 QVYSKLSNTQ 424 (477)
Q Consensus 415 ~~~~~~~~~~ 424 (477)
++++++.+..
T Consensus 439 ~~lk~~a~~A 448 (470)
T PLN03015 439 EEVRVSSERA 448 (470)
T ss_pred HHHHHHHHHH
Confidence 9998877653
No 27
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-34 Score=291.06 Aligned_cols=390 Identities=18% Similarity=0.223 Sum_probs=242.2
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC---------CC--CCeeEEEcccchhhchhhhccccc
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE---------PP--VNYTDIDLSFSYKYFKPQLQKGEV 97 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~~~~~ 97 (477)
..+|++ +|+++.||++|++.||+.|+.+|+.|||+++..... .. ..++++.++... .... ++.+.
T Consensus 8 ~~Hvv~-vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~-~~dg-lp~~~- 83 (491)
T PLN02534 8 QLHFVL-IPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPC-KEVG-LPIGC- 83 (491)
T ss_pred CCEEEE-ECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCC-ccCC-CCCCc-
Confidence 347777 899999999999999999999999999999943211 01 126676666311 0001 11100
Q ss_pred CccccccccccchhHHHHhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCccEEEEcCccccc-----ccCccC-CCCCC
Q psy15582 98 LPDAVDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTA-----YLGFLP-KLGYT 171 (477)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pDliI~d~~~~~~-----~~g~iP-~~~~~ 171 (477)
+.. ...+...+. ..+...... ..+.+.+++.. ...+||+||+|.++.|. .+| || ..-++
T Consensus 84 -~~~--~~~~~~~~~------~~~~~~~~~--l~~~l~~lL~~---~~~pp~cIV~D~f~~Wa~dVA~~lg-IP~v~F~t 148 (491)
T PLN02534 84 -ENL--DTLPSRDLL------RKFYDAVDK--LQQPLERFLEQ---AKPPPSCIISDKCLSWTSKTAQRFN-IPRIVFHG 148 (491)
T ss_pred -ccc--ccCCcHHHH------HHHHHHHHH--hHHHHHHHHHh---cCCCCcEEEECCccHHHHHHHHHhC-CCeEEEec
Confidence 000 000000111 111111111 11345666611 12468999999998777 566 77 11111
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH---Hh-hHHHH---HHHHHHcCC---CCCCHH-------HhhccccEEEEecCccc
Q psy15582 172 QSMTLMERMNNLFMQLYSKFYIRS---RL-MKKQD---EIMERYFGT---RGLSGK-------QLEENKTLLFISTSWLL 234 (477)
Q Consensus 172 ~~~~~~~r~~n~~~~~~~~~~~~~---~~-~~~~~---~~~~~~~~~---~~~~~~-------~~~~~~~~~l~~s~~~l 234 (477)
.......-..+........ .... .+ .+.+. ......+.. ..+... +....++.+++||+.+|
T Consensus 149 ~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eL 227 (491)
T PLN02534 149 MCCFSLLSSHNIRLHNAHL-SVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNEL 227 (491)
T ss_pred chHHHHHHHHHHHHhcccc-cCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHh
Confidence 1111110000000000000 0000 00 00000 001111100 000111 11123568999999999
Q ss_pred cCC-----cC-CCCceEEeCccccCCC--------C---C-CChhhHhhhhcC-CCceEEEecCCcccCCcccHHHHHHH
Q psy15582 235 TYP-----RP-VFPNTILLGPIHLNNP--------K---P-LPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDKRKAI 295 (477)
Q Consensus 235 ~~~-----~~-~~~~~~~vG~~~~~~~--------~---~-~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~~~~~~~i 295 (477)
|.. +. ..++++.|||+..... . . ..+++.+||+++ .+++|||+|||... ++.+...++
T Consensus 228 E~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~---~~~~q~~e~ 304 (491)
T PLN02534 228 EHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCR---LVPSQLIEL 304 (491)
T ss_pred hHHHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEeccccc---CCHHHHHHH
Confidence 964 22 3467999999964210 0 0 123577999997 57999999999986 688999999
Q ss_pred HHHHhhCCCceEEEEecCCC---------C-C----C-CCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHHhCC
Q psy15582 296 VDSFKQFPRHRIIWKWEEDI---------L-P----D-LPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGV 360 (477)
Q Consensus 296 ~~al~~~~~~~~l~~~~~~~---------~-~----~-~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~Gv 360 (477)
+.+|+..+ .+|||+++.+. + + . .+.|+++.+|+||.++|.|+++.+||||||+||++||+++||
T Consensus 305 a~gl~~~~-~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~Gv 383 (491)
T PLN02534 305 GLGLEASK-KPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGV 383 (491)
T ss_pred HHHHHhCC-CCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCC
Confidence 99999999 89999998421 1 1 1 256788899999999999999999999999999999999999
Q ss_pred cEEeccCCcchHHHHHHHH-HcCceEEccC------------C-CCCHHHHHHHHHHHhc-----CHHHHHHHHHHHHHh
Q psy15582 361 PMIGIPFFADQDTNVRKLE-SMDVARFLEY------------E-NITAETLVTLMKSILY-----NETVYRKSQVYSKLS 421 (477)
Q Consensus 361 P~i~~P~~~dQ~~na~~~~-~~G~g~~l~~------------~-~~~~~~l~~al~~ll~-----~~~~~~~a~~~~~~~ 421 (477)
|+|++|+++||+.||++++ ..|+|+.+.. + -++.++++++|++++. ..++|+||++++++.
T Consensus 384 P~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a 463 (491)
T PLN02534 384 PMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMA 463 (491)
T ss_pred CEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 9999999999999999986 5788887631 1 2689999999999995 257999999998877
Q ss_pred hcCC---CChHHHHHHHHHHHHHh
Q psy15582 422 NTQM---MSPKDTAVWWIEYVLKA 442 (477)
Q Consensus 422 ~~~~---~~~~~~a~~~ie~~~~~ 442 (477)
+..- .+......++|+.+.+.
T Consensus 464 ~~Av~~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 464 RKAMELGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHH
Confidence 6432 23345555666665443
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=8.8e-26 Score=220.90 Aligned_cols=325 Identities=17% Similarity=0.119 Sum_probs=196.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC----CCCCCeeEEEcccchhhchhhhcccccCcccccc
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK----EPPVNYTDIDLSFSYKYFKPQLQKGEVLPDAVDN 104 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (477)
|.||++ .+.++.||+.|.+++|++|.++||+|.+++..... ....++++..++.. ... .
T Consensus 1 ~~~i~~-~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~--~l~--------------~ 63 (352)
T PRK12446 1 MKKIVF-TGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSG--KLR--------------R 63 (352)
T ss_pred CCeEEE-EcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEecc--CcC--------------C
Confidence 678877 88899999999999999999999999999973322 12345665555421 010 1
Q ss_pred ccccchhHHHHhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCccEEEEcCcccc---c----ccCccC--CCCCCCCCC
Q psy15582 105 QRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHT---A----YLGFLP--KLGYTQSMT 175 (477)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pDliI~d~~~~~---~----~~g~iP--~~~~~~~~~ 175 (477)
...+..+.. .. ....... ....++ ++.+||+|++...+.. + ..| +| ...-...+.
T Consensus 64 ~~~~~~~~~-~~--~~~~~~~-------~~~~i~-----~~~kPdvvi~~Ggy~s~p~~~aa~~~~-~p~~i~e~n~~~g 127 (352)
T PRK12446 64 YFDLKNIKD-PF--LVMKGVM-------DAYVRI-----RKLKPDVIFSKGGFVSVPVVIGGWLNR-VPVLLHESDMTPG 127 (352)
T ss_pred CchHHHHHH-HH--HHHHHHH-------HHHHHH-----HhcCCCEEEecCchhhHHHHHHHHHcC-CCEEEECCCCCcc
Confidence 111111111 11 1111111 244566 7889999999876432 1 344 66 111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHhhccccEEEEecCccccCCcCCC-CceEEeCccccCC
Q psy15582 176 LMERMNNLFMQLYSKFYIRSRLMKKQDEIMERYFGTRGLSGKQLEENKTLLFISTSWLLTYPRPVF-PNTILLGPIHLNN 254 (477)
Q Consensus 176 ~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~-~~~~~vG~~~~~~ 254 (477)
. .|. ... +-++.+++...+.- ..++ .+++++|+-..+.
T Consensus 128 ~----~nr--------------------~~~--------------~~a~~v~~~f~~~~---~~~~~~k~~~tG~Pvr~~ 166 (352)
T PRK12446 128 L----ANK--------------------IAL--------------RFASKIFVTFEEAA---KHLPKEKVIYTGSPVREE 166 (352)
T ss_pred H----HHH--------------------HHH--------------HhhCEEEEEccchh---hhCCCCCeEEECCcCCcc
Confidence 1 111 111 11223333211100 1122 4667888644332
Q ss_pred -CCCCChhhHhhhhcC-CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCC---CCCCeEEeecC
Q psy15582 255 -PKPLPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPD---LPSNVICRKWL 329 (477)
Q Consensus 255 -~~~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~---~~~nv~i~~~v 329 (477)
.....++..+.+... ++++|+|..||..... -.+.+..++..+.. + ++++|.++.+..+. ..+++.+.+|+
T Consensus 167 ~~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~--in~~~~~~l~~l~~-~-~~vv~~~G~~~~~~~~~~~~~~~~~~f~ 242 (352)
T PRK12446 167 VLKGNREKGLAFLGFSRKKPVITIMGGSLGAKK--INETVREALPELLL-K-YQIVHLCGKGNLDDSLQNKEGYRQFEYV 242 (352)
T ss_pred cccccchHHHHhcCCCCCCcEEEEECCccchHH--HHHHHHHHHHhhcc-C-cEEEEEeCCchHHHHHhhcCCcEEecch
Confidence 111122222223322 5788999888876521 12333333333321 3 89999988754321 11456677887
Q ss_pred -Chh-hhhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCC-----cchHHHHHHHHHcCceEEccCCCCCHHHHHHHHH
Q psy15582 330 -PQH-DILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFF-----ADQDTNVRKLESMDVARFLEYENITAETLVTLMK 402 (477)
Q Consensus 330 -p~~-~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~-----~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~ 402 (477)
++. +++ ..+|++|||||++|+.|++++|+|+|++|.. +||..||+++++.|+|..+..++++++.|.+++.
T Consensus 243 ~~~m~~~~--~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~ 320 (352)
T PRK12446 243 HGELPDIL--AITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVE 320 (352)
T ss_pred hhhHHHHH--HhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHH
Confidence 544 567 5699999999999999999999999999975 5899999999999999999988999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy15582 403 SILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEY 438 (477)
Q Consensus 403 ~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~ 438 (477)
++++|++.++ +..+.+.. .++.+.++++++.
T Consensus 321 ~ll~~~~~~~---~~~~~~~~--~~aa~~i~~~i~~ 351 (352)
T PRK12446 321 ELSHNNEKYK---TALKKYNG--KEAIQTIIDHISE 351 (352)
T ss_pred HHHcCHHHHH---HHHHHcCC--CCHHHHHHHHHHh
Confidence 9998864332 22333443 2777777777754
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=3.8e-25 Score=215.28 Aligned_cols=302 Identities=20% Similarity=0.290 Sum_probs=185.1
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC-CCCCeeEEEcccchhhchhhhcccccCcccccccccc
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE-PPVNYTDIDLSFSYKYFKPQLQKGEVLPDAVDNQRRL 108 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (477)
+||++++...|.||+.++++||++| |||+|++++...... ....+....++...-.... ...+ ..
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~----~~ 66 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPRFPVREIPGLGPIQEN--------GRLD----RW 66 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccccCEEEccCceEeccC--------Cccc----hH
Confidence 5899988888999999999999999 699999999953321 1223444444321111110 0111 00
Q ss_pred chhHHHHhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCccEEEEcCccccc----ccCccC---CCCCCCC---CCHHH
Q psy15582 109 TGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTA----YLGFLP---KLGYTQS---MTLME 178 (477)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pDliI~d~~~~~~----~~g~iP---~~~~~~~---~~~~~ 178 (477)
..... .. .+.. ...... +.+.+.+ ++.+||+||+|+....+ ..| +| ++..... ..+..
T Consensus 67 ~~~~~-~~--~~~~-~~~~~~--~~~~~~l-----~~~~pDlVIsD~~~~~~~aa~~~g-iP~i~i~~~~~~~~~~~~~~ 134 (318)
T PF13528_consen 67 KTVRN-NI--RWLA-RLARRI--RREIRWL-----REFRPDLVISDFYPLAALAARRAG-IPVIVISNQYWFLHPNFWLP 134 (318)
T ss_pred HHHHH-HH--HhhH-HHHHHH--HHHHHHH-----HhcCCCEEEEcChHHHHHHHHhcC-CCEEEEEehHHcccccCCcc
Confidence 11100 00 1111 111111 3355667 78899999999864322 445 77 1111111 01100
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHhhccccEEEEecCccccCCcCCCCceEEeCccccCCCCCC
Q psy15582 179 RMNNLFMQLYSKFYIRSRLMKKQDEIMERYFGTRGLSGKQLEENKTLLFISTSWLLTYPRPVFPNTILLGPIHLNNPKPL 258 (477)
Q Consensus 179 r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~vG~~~~~~~~~~ 258 (477)
...+ ......+.+.+.. ...++..+..+.. .+.+...+..++||+........
T Consensus 135 ~~~~--------------~~~~~~~~~~~~~----------~~~~~~~l~~~~~---~~~~~~~~~~~~~p~~~~~~~~~ 187 (318)
T PF13528_consen 135 WDQD--------------FGRLIERYIDRYH----------FPPADRRLALSFY---PPLPPFFRVPFVGPIIRPEIREL 187 (318)
T ss_pred hhhh--------------HHHHHHHhhhhcc----------CCcccceecCCcc---ccccccccccccCchhccccccc
Confidence 0000 0000111222210 1123333333322 12222334567787764421111
Q ss_pred ChhhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecC-Ch-hhhhc
Q psy15582 259 PQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWL-PQ-HDILA 336 (477)
Q Consensus 259 ~~~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~v-p~-~~lL~ 336 (477)
+ .. .++.|+|++|+... . .++++++..+++++++. +....+..++|+++.+|. +. .+++
T Consensus 188 ~-------~~-~~~~iLv~~gg~~~----~-----~~~~~l~~~~~~~~~v~-g~~~~~~~~~ni~~~~~~~~~~~~~m- 248 (318)
T PF13528_consen 188 P-------PE-DEPKILVYFGGGGP----G-----DLIEALKALPDYQFIVF-GPNAADPRPGNIHVRPFSTPDFAELM- 248 (318)
T ss_pred C-------CC-CCCEEEEEeCCCcH----H-----HHHHHHHhCCCCeEEEE-cCCcccccCCCEEEeecChHHHHHHH-
Confidence 1 11 57889999999865 2 56778888877788877 433334458999999987 44 4577
Q ss_pred CCCceEEEEcCChhHHHHHHHhCCcEEeccC--CcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHH
Q psy15582 337 HPKVKLFIMQGGLQSSQEAIHFGVPMIGIPF--FADQDTNVRKLESMDVARFLEYENITAETLVTLMKSI 404 (477)
Q Consensus 337 h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~--~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~l 404 (477)
++++++|+|||.||++|++++|+|++++|. ..||..||++++++|+|+.++.++++++.|.++|+++
T Consensus 249 -~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 249 -AAADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred -HhCCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 679999999999999999999999999998 6799999999999999999998999999999999864
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=2.1e-22 Score=194.70 Aligned_cols=327 Identities=17% Similarity=0.205 Sum_probs=204.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCE-EEEEeec----CCCCCCCCeeEEEcccchhhchhhhcccccCccccccc
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHT-VTMIGTD----PLKEPPVNYTDIDLSFSYKYFKPQLQKGEVLPDAVDNQ 105 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~-V~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (477)
+|++ ...++.||+.|.++++++|.++|++ |.++... .......++.+..++... .. ..
T Consensus 2 ~ivl-~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~--~~--------------~~ 64 (357)
T COG0707 2 KIVL-TAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGG--LR--------------RK 64 (357)
T ss_pred eEEE-EeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEeccc--cc--------------cc
Confidence 4544 7778899999999999999999995 6666442 122223355555544311 00 00
Q ss_pred cccchhHHHHhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCccEEEEcCccccc-------ccCccC-CCCCC-CCCCH
Q psy15582 106 RRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTA-------YLGFLP-KLGYT-QSMTL 176 (477)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pDliI~d~~~~~~-------~~g~iP-~~~~~-~~~~~ 176 (477)
..+..++. ....+... ....+++ ++.+||+||+...+.+. ..| +| +..-. ..+..
T Consensus 65 ~~~~~~~~-------~~~~~~~~---~~a~~il-----~~~kPd~vig~Ggyvs~P~~~Aa~~~~-iPv~ihEqn~~~G~ 128 (357)
T COG0707 65 GSLKLLKA-------PFKLLKGV---LQARKIL-----KKLKPDVVIGTGGYVSGPVGIAAKLLG-IPVIIHEQNAVPGL 128 (357)
T ss_pred CcHHHHHH-------HHHHHHHH---HHHHHHH-----HHcCCCEEEecCCccccHHHHHHHhCC-CCEEEEecCCCcch
Confidence 11111111 11222221 2356777 78899999998876444 344 66 11111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHhhccccEEEEecCccccCCcCCCCceEEeCccccCC-C
Q psy15582 177 MERMNNLFMQLYSKFYIRSRLMKKQDEIMERYFGTRGLSGKQLEENKTLLFISTSWLLTYPRPVFPNTILLGPIHLNN-P 255 (477)
Q Consensus 177 ~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~vG~~~~~~-~ 255 (477)
.+++..+ .++.+.......-.+ .-+.++..+|.-.... .
T Consensus 129 ------------------------ank~~~~--------------~a~~V~~~f~~~~~~--~~~~~~~~tG~Pvr~~~~ 168 (357)
T COG0707 129 ------------------------ANKILSK--------------FAKKVASAFPKLEAG--VKPENVVVTGIPVRPEFE 168 (357)
T ss_pred ------------------------hHHHhHH--------------hhceeeecccccccc--CCCCceEEecCcccHHhh
Confidence 1111111 112222221110011 1122567777533222 2
Q ss_pred CCCChhhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCC-CceEEEEecCCCCC-------CCCCCeEEee
Q psy15582 256 KPLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFP-RHRIIWKWEEDILP-------DLPSNVICRK 327 (477)
Q Consensus 256 ~~~~~~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~-~~~~l~~~~~~~~~-------~~~~nv~i~~ 327 (477)
. .+.....+....++++|+|.-||+.. ..+-+.+.+++..+. ++.+++.++.+... +... +.+.+
T Consensus 169 ~-~~~~~~~~~~~~~~~~ilV~GGS~Ga-----~~ln~~v~~~~~~l~~~~~v~~~~G~~~~~~~~~~~~~~~~-~~v~~ 241 (357)
T COG0707 169 E-LPAAEVRKDGRLDKKTILVTGGSQGA-----KALNDLVPEALAKLANRIQVIHQTGKNDLEELKSAYNELGV-VRVLP 241 (357)
T ss_pred c-cchhhhhhhccCCCcEEEEECCcchh-----HHHHHHHHHHHHHhhhCeEEEEEcCcchHHHHHHHHhhcCc-EEEee
Confidence 2 33222222221158888888888765 233333444444443 38899888876422 2222 88999
Q ss_pred cCChhh-hhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCC----cchHHHHHHHHHcCceEEccCCCCCHHHHHHHHH
Q psy15582 328 WLPQHD-ILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFF----ADQDTNVRKLESMDVARFLEYENITAETLVTLMK 402 (477)
Q Consensus 328 ~vp~~~-lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~----~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~ 402 (477)
|.+++. ++ ..+|++||++|++|+.|+++.|+|+|.+|.. +||..||..++++|+|++++..++|++++.+.|.
T Consensus 242 f~~dm~~~~--~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~ 319 (357)
T COG0707 242 FIDDMAALL--AAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELIL 319 (357)
T ss_pred HHhhHHHHH--HhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHH
Confidence 999876 55 6799999999999999999999999999863 3999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q psy15582 403 SILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVLK 441 (477)
Q Consensus 403 ~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~ 441 (477)
+++++++-.+++.+.++.+... +..++.++.++...+
T Consensus 320 ~l~~~~~~l~~m~~~a~~~~~p--~aa~~i~~~~~~~~~ 356 (357)
T COG0707 320 RLLSNPEKLKAMAENAKKLGKP--DAAERIADLLLALAK 356 (357)
T ss_pred HHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhc
Confidence 9999988888888888887763 778888888877643
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.91 E-value=1.9e-22 Score=196.08 Aligned_cols=128 Identities=22% Similarity=0.333 Sum_probs=98.1
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCC-h-hhhhcCCCceEEEEcC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLP-Q-HDILAHPKVKLFIMQG 347 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp-~-~~lL~h~~~~~~I~hg 347 (477)
.++.|++.+|+... +.+++++++.+++.+++..........++|+.+.+|.| + .+++ +.|+++||||
T Consensus 187 ~~~~iLv~~g~~~~---------~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~l--~~ad~vI~~~ 255 (321)
T TIGR00661 187 GEDYILVYIGFEYR---------YKILELLGKIANVKFVCYSYEVAKNSYNENVEIRRITTDNFKELI--KNAELVITHG 255 (321)
T ss_pred CCCcEEEECCcCCH---------HHHHHHHHhCCCeEEEEeCCCCCccccCCCEEEEECChHHHHHHH--HhCCEEEECC
Confidence 56778888877432 34567777777556664322212235678999999997 2 3566 6799999999
Q ss_pred ChhHHHHHHHhCCcEEeccCCc--chHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHH
Q psy15582 348 GLQSSQEAIHFGVPMIGIPFFA--DQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVY 411 (477)
Q Consensus 348 G~~s~~Eal~~GvP~i~~P~~~--dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~ 411 (477)
|.+|+.||+++|+|++++|..+ ||..||+.++++|+|+.++..++ ++.+++.++++|+.|.
T Consensus 256 G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~---~~~~~~~~~~~~~~~~ 318 (321)
T TIGR00661 256 GFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL---RLLEAILDIRNMKRYK 318 (321)
T ss_pred ChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH---HHHHHHHhcccccccc
Confidence 9999999999999999999865 89999999999999999987654 6666777777776653
No 32
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.90 E-value=2.8e-22 Score=184.20 Aligned_cols=349 Identities=15% Similarity=0.156 Sum_probs=220.1
Q ss_pred cccccEEEEcCC-CCCCcHHHHHHHHHHHHhC--CCEEEEEeecCCC---CCCCCeeEEEcccchhhchhhhcccccCcc
Q psy15582 27 VESANVLIICPT-PSYSHQVPFIAIGKELVRR--GHTVTMIGTDPLK---EPPVNYTDIDLSFSYKYFKPQLQKGEVLPD 100 (477)
Q Consensus 27 ~~~~kIL~~~~~-~~~GH~~~~l~la~~L~~r--GH~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (477)
+++.||++++.. .|.||+.++..||++|++. |.+|++++..+.. ..++|++++.+|+.....+.... .
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~------~ 80 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYG------L 80 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCcee------e
Confidence 567899997664 5899999999999999998 9999999993322 23589999999874333322011 0
Q ss_pred ccccccccchhHHHHhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCccEEEEcCcccccccC-ccC----CCCCCCCC-
Q psy15582 101 AVDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTAYLG-FLP----KLGYTQSM- 174 (477)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pDliI~d~~~~~~~~g-~iP----~~~~~~~~- 174 (477)
.+ ...... ...+.-. +-+.+.. +.++||++|.|.+ +.+..+ ..| ....+...
T Consensus 81 ~d-~~~~l~----------e~~~~Rs-----~lil~t~-----~~fkPDi~IVd~~-P~Glr~EL~ptL~yl~~~~t~~v 138 (400)
T COG4671 81 VD-LDGDLE----------ETKKLRS-----QLILSTA-----ETFKPDIFIVDKF-PFGLRFELLPTLEYLKTTGTRLV 138 (400)
T ss_pred ee-cCCCHH----------HHHHHHH-----HHHHHHH-----HhcCCCEEEEecc-ccchhhhhhHHHHHHhhcCCcce
Confidence 01 111111 1111111 2355666 7889999999996 444222 111 00000000
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHhhccccEEEEecCcc-------ccCCcCCCCceEEe
Q psy15582 175 TLMERMNNLFMQLYSKFYIRSRLMKKQDEIMERYFGTRGLSGKQLEENKTLLFISTSWL-------LTYPRPVFPNTILL 247 (477)
Q Consensus 175 ~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~-------l~~~~~~~~~~~~v 247 (477)
-....+.+........ +-.+..... +-+..|.+++..++. ++++..+..++.|+
T Consensus 139 L~lr~i~D~p~~~~~~-w~~~~~~~~------------------I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~yt 199 (400)
T COG4671 139 LGLRSIRDIPQELEAD-WRRAETVRL------------------INRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYT 199 (400)
T ss_pred eehHhhhhchhhhccc-hhhhHHHHH------------------HHHhheEEEEecCccccChhhcCCccHhhhhheeEe
Confidence 0011111111111111 100011111 222345555555544 33444566789999
Q ss_pred CccccCC-CCCCChhhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCce--EEEEecCCCCC-------
Q psy15582 248 GPIHLNN-PKPLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHR--IIWKWEEDILP------- 317 (477)
Q Consensus 248 G~~~~~~-~~~~~~~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~--~l~~~~~~~~~------- 317 (477)
|.+..+. ..+.|. ....++..|+|+.|+... ..+++...++|....++.+ .++..|+....
T Consensus 200 G~vq~~~~~~~~p~-----~~~pE~~~Ilvs~GGG~d----G~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~ 270 (400)
T COG4671 200 GFVQRSLPHLPLPP-----HEAPEGFDILVSVGGGAD----GAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLL 270 (400)
T ss_pred EEeeccCcCCCCCC-----cCCCccceEEEecCCChh----hHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHH
Confidence 9993221 122222 111357889999999887 7899999999987766566 55555654322
Q ss_pred ---CCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCc---chHHHHHHHHHcCceEEccCCC
Q psy15582 318 ---DLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFA---DQDTNVRKLESMDVARFLEYEN 391 (477)
Q Consensus 318 ---~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~---dQ~~na~~~~~~G~g~~l~~~~ 391 (477)
..-+++.+.+|-.+..-|. ..++.+|+.||+||++|-+++|+|.+++|... ||...|+|+++.|+.-++.+++
T Consensus 271 ~~A~~~p~i~I~~f~~~~~~ll-~gA~~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~ 349 (400)
T COG4671 271 ASAPKRPHISIFEFRNDFESLL-AGARLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPEN 349 (400)
T ss_pred HhcccCCCeEEEEhhhhHHHHH-HhhheeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCccc
Confidence 1237999999998865443 46999999999999999999999999999764 9999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q psy15582 392 ITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVLK 441 (477)
Q Consensus 392 ~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~ 441 (477)
+++..++++|...++-|+... ..+. .+|++.....+-..+.
T Consensus 350 lt~~~La~al~~~l~~P~~~~------~~L~---L~G~~~~a~~l~e~L~ 390 (400)
T COG4671 350 LTPQNLADALKAALARPSPSK------PHLD---LEGLEHIARILAELLS 390 (400)
T ss_pred CChHHHHHHHHhcccCCCCCc------cccC---chhhHhHHHHHHHHhh
Confidence 999999999999997443221 1222 3566666666644443
No 33
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.88 E-value=7.8e-20 Score=180.87 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=115.7
Q ss_pred HHHHHHHhhCCCc-eEEEEecCCCCC------CCCCCeEEeecCCh-hhhhcCCCceEEEEcCChhHHHHHHHhCCcEEe
Q psy15582 293 KAIVDSFKQFPRH-RIIWKWEEDILP------DLPSNVICRKWLPQ-HDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIG 364 (477)
Q Consensus 293 ~~i~~al~~~~~~-~~l~~~~~~~~~------~~~~nv~i~~~vp~-~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~ 364 (477)
..+.+++.+..+. .+++.++....+ ..+-++.+.+|+++ .+++ +.+|++|+|+|.+++.||+++|+|+|+
T Consensus 200 ~~l~~a~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~~d~~i~~~g~~~~~Ea~~~g~Pvv~ 277 (357)
T PRK00726 200 EAVPEALALLPEALQVIHQTGKGDLEEVRAAYAAGINAEVVPFIDDMAAAY--AAADLVICRAGASTVAELAAAGLPAIL 277 (357)
T ss_pred HHHHHHHHHhhhCcEEEEEcCCCcHHHHHHHhhcCCcEEEeehHhhHHHHH--HhCCEEEECCCHHHHHHHHHhCCCEEE
Confidence 3334666555422 455555542211 12234889999954 4678 679999999999999999999999999
Q ss_pred ccC----CcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q psy15582 365 IPF----FADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVL 440 (477)
Q Consensus 365 ~P~----~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~ 440 (477)
+|. .+||..|+..+++.|+|..++.++++++.+.+++.++++|+++++++.+.++.... ..+.+++++.++.++
T Consensus 278 ~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 278 VPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGK--PDAAERLADLIEELA 355 (357)
T ss_pred ecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCC--cCHHHHHHHHHHHHh
Confidence 986 46899999999999999999888788999999999999999999999998888765 488999999988876
Q ss_pred H
Q psy15582 441 K 441 (477)
Q Consensus 441 ~ 441 (477)
+
T Consensus 356 ~ 356 (357)
T PRK00726 356 R 356 (357)
T ss_pred h
Confidence 5
No 34
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.84 E-value=2e-18 Score=170.30 Aligned_cols=157 Identities=17% Similarity=0.187 Sum_probs=113.0
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC-------CCCCCeEEeecCCh-hhhhcCCCceE
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP-------DLPSNVICRKWLPQ-HDILAHPKVKL 342 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~-------~~~~nv~i~~~vp~-~~lL~h~~~~~ 342 (477)
+++|++..|+..... ..+.+...++.+.+ ++..+++.++....+ ...+|+++.+|+.. ..++ ..+|+
T Consensus 181 ~~~i~~~~g~~~~~~--~~~~l~~a~~~l~~-~~~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~~~~l--~~ad~ 255 (350)
T cd03785 181 KPTLLVFGGSQGARA--INEAVPEALAELLR-KRLQVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAY--AAADL 255 (350)
T ss_pred CeEEEEECCcHhHHH--HHHHHHHHHHHhhc-cCeEEEEEcCCccHHHHHHHHhccCCCeEEeehhhhHHHHH--HhcCE
Confidence 444555445543210 12223233344433 236666655543211 22478999999844 4577 56999
Q ss_pred EEEcCChhHHHHHHHhCCcEEeccC----CcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy15582 343 FIMQGGLQSSQEAIHFGVPMIGIPF----FADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYS 418 (477)
Q Consensus 343 ~I~hgG~~s~~Eal~~GvP~i~~P~----~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~ 418 (477)
+|+++|.+|+.||+++|+|++++|. .++|..|+..+.+.|+|..++..+.+++++.+++.++++|++.++++.+.+
T Consensus 256 ~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 335 (350)
T cd03785 256 VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAA 335 (350)
T ss_pred EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999985 468999999999999999998766789999999999999999888888877
Q ss_pred HHhhcCCCChHHHHHH
Q psy15582 419 KLSNTQMMSPKDTAVW 434 (477)
Q Consensus 419 ~~~~~~~~~~~~~a~~ 434 (477)
+.... ..+.+++++
T Consensus 336 ~~~~~--~~~~~~i~~ 349 (350)
T cd03785 336 RSLAR--PDAAERIAD 349 (350)
T ss_pred HhcCC--CCHHHHHHh
Confidence 76654 366777665
No 35
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.82 E-value=1.2e-18 Score=174.01 Aligned_cols=160 Identities=13% Similarity=0.141 Sum_probs=121.3
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHH-HhhCCCceEEEEecCCC-C-C------CCCCCeEEeecCChhh-hhcCCC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDS-FKQFPRHRIIWKWEEDI-L-P------DLPSNVICRKWLPQHD-ILAHPK 339 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~a-l~~~~~~~~l~~~~~~~-~-~------~~~~nv~i~~~vp~~~-lL~h~~ 339 (477)
++++|++..|+.... ..+..++++ ++..++.++++.++++. . + ...+++.+.+|+++.. ++ ..
T Consensus 201 ~~~~ilv~~G~lg~~-----k~~~~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~--~~ 273 (391)
T PRK13608 201 DKQTILMSAGAFGVS-----KGFDTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWM--AS 273 (391)
T ss_pred CCCEEEEECCCcccc-----hhHHHHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHH--Hh
Confidence 467788888887641 223344444 33335578877766542 1 1 2346899999998764 66 56
Q ss_pred ceEEEEcCChhHHHHHHHhCCcEEec-cCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy15582 340 VKLFIMQGGLQSSQEAIHFGVPMIGI-PFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYS 418 (477)
Q Consensus 340 ~~~~I~hgG~~s~~Eal~~GvP~i~~-P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~ 418 (477)
+|++|+.+|..|+.||+++|+|+|++ |..++|..|+..+++.|+|+... +++++.++|.++++|++.++++++.+
T Consensus 274 aDl~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~----~~~~l~~~i~~ll~~~~~~~~m~~~~ 349 (391)
T PRK13608 274 SQLMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD----TPEEAIKIVASLTNGNEQLTNMISTM 349 (391)
T ss_pred hhEEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC----CHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999987 78788899999999999998865 78999999999999998888888888
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHh
Q psy15582 419 KLSNTQMMSPKDTAVWWIEYVLKA 442 (477)
Q Consensus 419 ~~~~~~~~~~~~~a~~~ie~~~~~ 442 (477)
+..... .+.+..++.++.++.+
T Consensus 350 ~~~~~~--~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 350 EQDKIK--YATQTICRDLLDLIGH 371 (391)
T ss_pred HHhcCC--CCHHHHHHHHHHHhhh
Confidence 877553 5566666666666654
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.82 E-value=9.3e-19 Score=174.65 Aligned_cols=160 Identities=15% Similarity=0.157 Sum_probs=122.5
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCC---------CCCCCCCeEEeecCChh-hhhcCCC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI---------LPDLPSNVICRKWLPQH-DILAHPK 339 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~---------~~~~~~nv~i~~~vp~~-~lL~h~~ 339 (477)
++++|++..|+.... ..+..+++++.+.+++++++.++++. ....++|+++.+|+++. .++ ..
T Consensus 201 ~~~~il~~~G~~~~~-----k~~~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~--~~ 273 (380)
T PRK13609 201 NKKILLIMAGAHGVL-----GNVKELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELF--RV 273 (380)
T ss_pred CCcEEEEEcCCCCCC-----cCHHHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHH--Hh
Confidence 356677766766431 23455677776666688887766421 11334689999999885 577 55
Q ss_pred ceEEEEcCChhHHHHHHHhCCcEEec-cCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy15582 340 VKLFIMQGGLQSSQEAIHFGVPMIGI-PFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYS 418 (477)
Q Consensus 340 ~~~~I~hgG~~s~~Eal~~GvP~i~~-P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~ 418 (477)
+|++|+.+|..|+.||+++|+|+|+. |..++|..|+..+++.|+|+... +++++.+++.++++|++.++++++..
T Consensus 274 aD~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~----~~~~l~~~i~~ll~~~~~~~~m~~~~ 349 (380)
T PRK13609 274 TSCMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVIR----DDEEVFAKTEALLQDDMKLLQMKEAM 349 (380)
T ss_pred ccEEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEEC----CHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 99999999999999999999999985 77788899999999999998764 78999999999999999888888877
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHh
Q psy15582 419 KLSNTQMMSPKDTAVWWIEYVLKA 442 (477)
Q Consensus 419 ~~~~~~~~~~~~~a~~~ie~~~~~ 442 (477)
+.+... ...+++++.++..+..
T Consensus 350 ~~~~~~--~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 350 KSLYLP--EPADHIVDDILAENHV 371 (380)
T ss_pred HHhCCC--chHHHHHHHHHHhhhh
Confidence 776653 5677777777776544
No 37
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.77 E-value=1.8e-16 Score=156.34 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=86.7
Q ss_pred ChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCC---cchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhc
Q psy15582 330 PQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFF---ADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILY 406 (477)
Q Consensus 330 p~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~---~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~ 406 (477)
+-..++ +.+|++|+++|.+|+.||+++|+|+|++|.. ++|..|+..+++.|.|..++.++.+++++.+++.++++
T Consensus 243 ~~~~~l--~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 243 NMAAAY--AAADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred CHHHHH--HhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 345677 5699999999988999999999999998863 47889999999999999998777789999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHHH
Q psy15582 407 NETVYRKSQVYSKLSNTQMMSPKDTAVWW 435 (477)
Q Consensus 407 ~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ 435 (477)
|++.++++.+.++.... ....+++++.
T Consensus 321 ~~~~~~~~~~~~~~~~~--~~~~~~i~~~ 347 (348)
T TIGR01133 321 DPANLEAMAEAARKLAK--PDAAKRIAEL 347 (348)
T ss_pred CHHHHHHHHHHHHhcCC--ccHHHHHHhh
Confidence 99999888888877665 3667776654
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.75 E-value=2.8e-17 Score=155.80 Aligned_cols=242 Identities=15% Similarity=0.171 Sum_probs=147.3
Q ss_pred CCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC-----CCCCeeEEEcccchhhchhhhcccccCccccccccccchhHH
Q psy15582 39 PSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE-----PPVNYTDIDLSFSYKYFKPQLQKGEVLPDAVDNQRRLTGYEF 113 (477)
Q Consensus 39 ~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (477)
.|.||+.++++||++|.++||+|+|++...... ...+++++.++...+ +.
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~--------------~~----------- 66 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESS--------------RY----------- 66 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCc--------------hh-----------
Confidence 489999999999999999999999999853332 134555544432100 00
Q ss_pred HHhHHHHHHHHHHHHhCCHHHHHHhcccccCCCCccEEEEcCcccccccCccCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy15582 114 IVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTAYLGFLPKLGYTQSMTLMERMNNLFMQLYSKFYI 193 (477)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pDliI~d~~~~~~~~g~iP~~~~~~~~~~~~r~~n~~~~~~~~~~~ 193 (477)
+. ...+.+.+ ++.+||++|+|+... . ..
T Consensus 67 -----~d----------~~~~~~~l-----~~~~~d~vV~D~y~~----~----------~~------------------ 94 (279)
T TIGR03590 67 -----DD----------ALELINLL-----EEEKFDILIVDHYGL----D----------AD------------------ 94 (279)
T ss_pred -----hh----------HHHHHHHH-----HhcCCCEEEEcCCCC----C----------HH------------------
Confidence 00 02245666 667999999999720 0 00
Q ss_pred HHHhhHHHHHHHHHHcCCCCCCHHHh---hccccEEEEecCcc--ccCCcCCC-CceEEeCccccCCCCCCChhhHhhhh
Q psy15582 194 RSRLMKKQDEIMERYFGTRGLSGKQL---EENKTLLFISTSWL--LTYPRPVF-PNTILLGPIHLNNPKPLPQNLKDWIE 267 (477)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~s~~~--l~~~~~~~-~~~~~vG~~~~~~~~~~~~~l~~~l~ 267 (477)
+.+.++.. +.....++|. -..+|.++..+... ..+....+ ....+.|+=.. ++.+++.+...
T Consensus 95 -------~~~~~k~~-~~~l~~iDD~~~~~~~~D~vin~~~~~~~~~y~~~~~~~~~~l~G~~Y~----~lr~eF~~~~~ 162 (279)
T TIGR03590 95 -------WEKLIKEF-GRKILVIDDLADRPHDCDLLLDQNLGADASDYQGLVPANCRLLLGPSYA----LLREEFYQLAT 162 (279)
T ss_pred -------HHHHHHHh-CCeEEEEecCCCCCcCCCEEEeCCCCcCHhHhcccCcCCCeEEecchHH----hhhHHHHHhhH
Confidence 11112211 2112222222 12567766655431 11111123 24567776221 12333322111
Q ss_pred cC----CCceEEEecCCcccCCcccHHHHHHHHHHHhhC-CCceEEEEecCCCCC--------CCCCCeEEeecCChh-h
Q psy15582 268 GA----KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQF-PRHRIIWKWEEDILP--------DLPSNVICRKWLPQH-D 333 (477)
Q Consensus 268 ~~----~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~-~~~~~l~~~~~~~~~--------~~~~nv~i~~~vp~~-~ 333 (477)
.. ..+.|+|++|+.... .....+++++.+. +++++.+.+|..... ...+|+++.+++++. .
T Consensus 163 ~~~~~~~~~~iLi~~GG~d~~-----~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~ 237 (279)
T TIGR03590 163 ANKRRKPLRRVLVSFGGADPD-----NLTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAE 237 (279)
T ss_pred hhhcccccCeEEEEeCCcCCc-----CHHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHH
Confidence 11 246899999987652 2445556666554 236777766653211 234689999999987 5
Q ss_pred hhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcchHHHHHH
Q psy15582 334 ILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRK 377 (477)
Q Consensus 334 lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~ 377 (477)
++ ..+|++|++|| +|++|++++|+|+|++|...+|..||+.
T Consensus 238 lm--~~aDl~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 238 LM--NEADLAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HH--HHCCEEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 66 56999999999 9999999999999999999999999975
No 39
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.73 E-value=1.1e-15 Score=152.30 Aligned_cols=209 Identities=13% Similarity=0.117 Sum_probs=131.9
Q ss_pred ccccEEEEecCccccCC--cCCC-CceEEeCccccCC--CC--CCChhhHhhhhcC-CCceEEEecCCcccCCcccHHHH
Q psy15582 221 ENKTLLFISTSWLLTYP--RPVF-PNTILLGPIHLNN--PK--PLPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDKR 292 (477)
Q Consensus 221 ~~~~~~l~~s~~~l~~~--~~~~-~~~~~vG~~~~~~--~~--~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~~~~~ 292 (477)
+.+|.+++.+....+.- ...+ .++..+|. ..+. .. ...+++.+-++.. ++++|++.-|+... .. -...+
T Consensus 149 ~~~d~~~~~s~~~~~~l~~~g~~~~ki~v~g~-~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~-~~-~~~li 225 (382)
T PLN02605 149 KGVTRCFCPSEEVAKRALKRGLEPSQIRVYGL-PIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGM-GP-LEETA 225 (382)
T ss_pred CCCCEEEECCHHHHHHHHHcCCCHHHEEEECc-ccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCccc-cc-HHHHH
Confidence 45677777665432221 1233 35666653 2221 11 1122333333332 34555554444332 11 23444
Q ss_pred HHHHHHHh----hCCCceEEEEecCCC-C----C--CCCCCeEEeecCChhh-hhcCCCceEEEEcCChhHHHHHHHhCC
Q psy15582 293 KAIVDSFK----QFPRHRIIWKWEEDI-L----P--DLPSNVICRKWLPQHD-ILAHPKVKLFIMQGGLQSSQEAIHFGV 360 (477)
Q Consensus 293 ~~i~~al~----~~~~~~~l~~~~~~~-~----~--~~~~nv~i~~~vp~~~-lL~h~~~~~~I~hgG~~s~~Eal~~Gv 360 (477)
+.+.+.+. ..++.++++.+|++. . . ....++++.+|+++.. ++ ..+|++|+.+|.+|+.||+++|+
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~--~aaDv~V~~~g~~ti~EAma~g~ 303 (382)
T PLN02605 226 RALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWM--GACDCIITKAGPGTIAEALIRGL 303 (382)
T ss_pred HHHHHhhccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHH--HhCCEEEECCCcchHHHHHHcCC
Confidence 44443331 123466666666432 1 1 1235799999999865 55 57999999999999999999999
Q ss_pred cEEeccC-CcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy15582 361 PMIGIPF-FADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYN-ETVYRKSQVYSKLSNTQMMSPKDTAVWWIEY 438 (477)
Q Consensus 361 P~i~~P~-~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~-~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~ 438 (477)
|+|+.+. .+.|..|+..+.+.|+|+.+. +++++.+++.++++| ++.++++++.++..... ++.+.+++.+..
T Consensus 304 PvI~~~~~pgqe~gn~~~i~~~g~g~~~~----~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~--~a~~~i~~~l~~ 377 (382)
T PLN02605 304 PIILNGYIPGQEEGNVPYVVDNGFGAFSE----SPKEIARIVAEWFGDKSDELEAMSENALKLARP--EAVFDIVHDLHE 377 (382)
T ss_pred CEEEecCCCccchhhHHHHHhCCceeecC----CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--chHHHHHHHHHH
Confidence 9998864 455568999999999998763 899999999999988 88888888887777652 666676766665
Q ss_pred HH
Q psy15582 439 VL 440 (477)
Q Consensus 439 ~~ 440 (477)
++
T Consensus 378 ~~ 379 (382)
T PLN02605 378 LV 379 (382)
T ss_pred Hh
Confidence 54
No 40
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.66 E-value=2.7e-15 Score=149.11 Aligned_cols=159 Identities=12% Similarity=0.018 Sum_probs=106.3
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhh----CCCceEEEEecCCC----CC----C--CCCCeEEeecCChhhhh
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQ----FPRHRIIWKWEEDI----LP----D--LPSNVICRKWLPQHDIL 335 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~----~~~~~~l~~~~~~~----~~----~--~~~nv~i~~~vp~~~lL 335 (477)
++++|.+.-||.... -......+++++.. .++.++++...+.. .+ . ....+.+..+ +...++
T Consensus 190 ~~~~Ilvl~GSR~ae---i~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l 265 (385)
T TIGR00215 190 NGETLALLPGSRGSE---VEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDG-DARKAM 265 (385)
T ss_pred CCCEEEEECCCCHHH---HHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECc-hHHHHH
Confidence 466777766776541 13344445544332 34567766543311 11 1 1223443332 233467
Q ss_pred cCCCceEEEEcCChhHHHHHHHhCCcEEec----cCCc---------chHHHHHHHHHcCceEEccCCCCCHHHHHHHHH
Q psy15582 336 AHPKVKLFIMQGGLQSSQEAIHFGVPMIGI----PFFA---------DQDTNVRKLESMDVARFLEYENITAETLVTLMK 402 (477)
Q Consensus 336 ~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~----P~~~---------dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~ 402 (477)
..+|++|+..|..|+ |++++|+|+|++ |+.. .|..|+..+++.+++..+-.+++|++.|.+++.
T Consensus 266 --~aADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~ 342 (385)
T TIGR00215 266 --FAADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALL 342 (385)
T ss_pred --HhCCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHH
Confidence 569999999999887 999999999988 7642 388899999999999998888999999999999
Q ss_pred HHhcCH----HHHHHH----HHHHHHhhcCCCChHHHHHHHHH
Q psy15582 403 SILYNE----TVYRKS----QVYSKLSNTQMMSPKDTAVWWIE 437 (477)
Q Consensus 403 ~ll~~~----~~~~~a----~~~~~~~~~~~~~~~~~a~~~ie 437 (477)
++|+|+ ++++++ .++.+.+.. .++.+++++.|.
T Consensus 343 ~ll~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~a~~i~ 383 (385)
T TIGR00215 343 LLLENGLKAYKEMHRERQFFEELRQRIYC--NADSERAAQAVL 383 (385)
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHh
Confidence 999998 655544 444444443 256678887654
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.63 E-value=4.6e-17 Score=142.72 Aligned_cols=140 Identities=18% Similarity=0.279 Sum_probs=100.1
Q ss_pred eEEEecCCcccCCcccHHHHHHHHHHHhhC-CCceEEEEecCCCCC-------CCCCCeEEeecCCh-hhhhcCCCceEE
Q psy15582 273 VIYFSLGTNMQSASLQEDKRKAIVDSFKQF-PRHRIIWKWEEDILP-------DLPSNVICRKWLPQ-HDILAHPKVKLF 343 (477)
Q Consensus 273 ~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~-~~~~~l~~~~~~~~~-------~~~~nv~i~~~vp~-~~lL~h~~~~~~ 343 (477)
+|+|+.||..... + .+.+..+.+.+... +++++++.+|..... +.+.|+.+.+|+++ ..++ ..+|++
T Consensus 1 tilv~gGs~g~~~-l-~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m--~~aDlv 76 (167)
T PF04101_consen 1 TILVTGGSQGARD-L-NRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKVENFNPNVKVFGFVDNMAELM--AAADLV 76 (167)
T ss_dssp -EEEEETTTSHHH-H-HCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCHCCTTCCCEEECSSSSHHHHH--HHHSEE
T ss_pred CEEEEECCCCHHH-H-HHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHHhccCCcEEEEechhhHHHHH--HHcCEE
Confidence 5889989876511 0 12222233333322 227888888864321 22378999999995 5577 569999
Q ss_pred EEcCChhHHHHHHHhCCcEEeccCCc----chHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHH
Q psy15582 344 IMQGGLQSSQEAIHFGVPMIGIPFFA----DQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQV 416 (477)
Q Consensus 344 I~hgG~~s~~Eal~~GvP~i~~P~~~----dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~ 416 (477)
|||||.+|++|++++|+|+|++|... ||..||..+++.|+|+.+.....+++.|.++|.++++++..+..+.+
T Consensus 77 Is~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~~~~~~~ 153 (167)
T PF04101_consen 77 ISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPEKLKEMAK 153 (167)
T ss_dssp EECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-SHHHCC
T ss_pred EeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999999988 99999999999999999998888899999999999998776444433
No 42
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.56 E-value=3.3e-13 Score=134.74 Aligned_cols=164 Identities=14% Similarity=0.068 Sum_probs=98.8
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHh----hCCCceEEEEec-CCCCC-------CC-CCCeEEeecCCh-hhhhc
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFK----QFPRHRIIWKWE-EDILP-------DL-PSNVICRKWLPQ-HDILA 336 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~----~~~~~~~l~~~~-~~~~~-------~~-~~nv~i~~~vp~-~~lL~ 336 (477)
+++|++..||.... .......+++++. +.++.++++..+ +...+ .. .-++.+.. +. ..++
T Consensus 186 ~~~il~~~gsr~~~---~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~- 259 (380)
T PRK00025 186 ARVLALLPGSRGQE---IKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLD--GQKREAM- 259 (380)
T ss_pred CCEEEEECCCCHHH---HHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEc--ccHHHHH-
Confidence 45556655654331 1122344444433 334578888765 32111 12 22344432 32 3466
Q ss_pred CCCceEEEEcCChhHHHHHHHhCCcEEeccCCc--------chHHH-----HHHHHHcCceEEccCCCCCHHHHHHHHHH
Q psy15582 337 HPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFA--------DQDTN-----VRKLESMDVARFLEYENITAETLVTLMKS 403 (477)
Q Consensus 337 h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~--------dQ~~n-----a~~~~~~G~g~~l~~~~~~~~~l~~al~~ 403 (477)
..+|++|+.+|.+++ ||+++|+|+|+.|-.. +|..| +..+++.+++..+.....+++++.+++.+
T Consensus 260 -~~aDl~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 337 (380)
T PRK00025 260 -AAADAALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLP 337 (380)
T ss_pred -HhCCEEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHH
Confidence 569999999998877 9999999999885432 22222 23333334444455456789999999999
Q ss_pred HhcCHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHh
Q psy15582 404 ILYNETVYRKSQVYSKLSNTQ-MMSPKDTAVWWIEYVLKA 442 (477)
Q Consensus 404 ll~~~~~~~~a~~~~~~~~~~-~~~~~~~a~~~ie~~~~~ 442 (477)
+++|++.++++.+..+..... ..++.++++++|..+++.
T Consensus 338 ll~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~ 377 (380)
T PRK00025 338 LLADGARRQALLEGFTELHQQLRCGADERAAQAVLELLKQ 377 (380)
T ss_pred HhcCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Confidence 999998877666554222211 137889999999887654
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.52 E-value=7.2e-12 Score=123.47 Aligned_cols=156 Identities=12% Similarity=0.091 Sum_probs=107.6
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC---CCCCCeEEeecCChhh---hhcCCCceEE
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP---DLPSNVICRKWLPQHD---ILAHPKVKLF 343 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~---~~~~nv~i~~~vp~~~---lL~h~~~~~~ 343 (477)
.++.+++..|+....+ ..+.+-.+++.+.+.+++++++...+.... ...+||.+.+++++.+ ++ ..++++
T Consensus 195 ~~~~~i~~~G~~~~~k--~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~--~~~d~~ 270 (364)
T cd03814 195 PDRPVLLYVGRLAPEK--NLEALLDADLPLRRRPPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAY--ASADVF 270 (364)
T ss_pred CCCeEEEEEecccccc--CHHHHHHHHHHhhhcCCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHH--HhCCEE
Confidence 3566778888866533 233333333333332457888877654322 3568999999998765 56 559999
Q ss_pred EEcCC----hhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q psy15582 344 IMQGG----LQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSK 419 (477)
Q Consensus 344 I~hgG----~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~ 419 (477)
+..+. .+++.||+++|+|+|+.+..+ +...+++.+.|..++.. +.+++.+++.++++|++.++++.+.+.
T Consensus 271 l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~~~g~~~~~~--~~~~l~~~i~~l~~~~~~~~~~~~~~~ 344 (364)
T cd03814 271 VFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDGENGLLVEPG--DAEAFAAALAALLADPELRRRMAARAR 344 (364)
T ss_pred EECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCCcceEEcCCC--CHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 96653 488999999999999887654 45566777899988755 788899999999999988888877776
Q ss_pred HhhcCCCChHHHHHHHHH
Q psy15582 420 LSNTQMMSPKDTAVWWIE 437 (477)
Q Consensus 420 ~~~~~~~~~~~~a~~~ie 437 (477)
....+ ++.. ..++-++
T Consensus 345 ~~~~~-~~~~-~~~~~~~ 360 (364)
T cd03814 345 AEAER-RSWE-AFLDNLL 360 (364)
T ss_pred HHHhh-cCHH-HHHHHHH
Confidence 66532 3433 3333333
No 44
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=1.8e-13 Score=122.81 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=110.1
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCC-CceEEEEecCCCCC------CCCCCeEEeecCChhhhhcCCCceEE
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFP-RHRIIWKWEEDILP------DLPSNVICRKWLPQHDILAHPKVKLF 343 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~-~~~~l~~~~~~~~~------~~~~nv~i~~~vp~~~lL~h~~~~~~ 343 (477)
..-|+|++|+... ..+...++..+.+.+ ...+|.....+.+. +..+|+.+......++=|+ ..+++.
T Consensus 158 ~r~ilI~lGGsDp-----k~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~dma~LM-ke~d~a 231 (318)
T COG3980 158 KRDILITLGGSDP-----KNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTNDMAELM-KEADLA 231 (318)
T ss_pred hheEEEEccCCCh-----hhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHhhCCCeeeEecchhHHHHH-Hhcchh
Confidence 5669999999764 566777788887766 23444442222222 3457888888888766444 469999
Q ss_pred EEcCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhc
Q psy15582 344 IMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNT 423 (477)
Q Consensus 344 I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~ 423 (477)
|+.|| .|++|++..|+|.+++|+...|.-.|...+..|+-..++.. ++.+.....+.++.+|...+.+....++.+-+
T Consensus 232 I~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~~-l~~~~~~~~~~~i~~d~~~rk~l~~~~~~i~d 309 (318)
T COG3980 232 ISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGYH-LKDLAKDYEILQIQKDYARRKNLSFGSKLIGD 309 (318)
T ss_pred eeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccCC-CchHHHHHHHHHhhhCHHHhhhhhhccceeec
Confidence 99998 48999999999999999999999999999999998887654 67777777788888888888877776665544
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.45 E-value=5.2e-11 Score=122.01 Aligned_cols=152 Identities=9% Similarity=0.062 Sum_probs=107.8
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC---C--CCCCeEEeecCChhh---hhcCCCceE
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP---D--LPSNVICRKWLPQHD---ILAHPKVKL 342 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~---~--~~~nv~i~~~vp~~~---lL~h~~~~~ 342 (477)
+..+++..|+... ......+++++++.+++++++..++...+ . ...+|.+.+++++.+ ++ ..+|+
T Consensus 262 ~~~~i~~vGrl~~-----~K~~~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~--~~aDv 334 (465)
T PLN02871 262 EKPLIVYVGRLGA-----EKNLDFLKRVMERLPGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAY--ASGDV 334 (465)
T ss_pred CCeEEEEeCCCch-----hhhHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHH--HHCCE
Confidence 4556677788765 45567788888888778988888764322 1 135899999998654 56 55899
Q ss_pred EEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHH---cCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHH
Q psy15582 343 FIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLES---MDVARFLEYENITAETLVTLMKSILYNETVYRKSQ 415 (477)
Q Consensus 343 ~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~---~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~ 415 (477)
+|.- |-..++.||+++|+|+|+....+ ....+++ .+.|..++.+ +++++.++|.++++|++.++++.
T Consensus 335 ~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~--d~~~la~~i~~ll~~~~~~~~~~ 408 (465)
T PLN02871 335 FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPG--DVDDCVEKLETLLADPELRERMG 408 (465)
T ss_pred EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCC--CHHHHHHHHHHHHhCHHHHHHHH
Confidence 9854 33467999999999999876533 3334454 6789988765 78999999999999988777777
Q ss_pred HHHHHhhcCCCChHHHHHHHH
Q psy15582 416 VYSKLSNTQMMSPKDTAVWWI 436 (477)
Q Consensus 416 ~~~~~~~~~~~~~~~~a~~~i 436 (477)
+.++....+ ++-...+.++.
T Consensus 409 ~~a~~~~~~-fsw~~~a~~l~ 428 (465)
T PLN02871 409 AAAREEVEK-WDWRAATRKLR 428 (465)
T ss_pred HHHHHHHHh-CCHHHHHHHHH
Confidence 666655433 55554444444
No 46
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.40 E-value=2.1e-11 Score=121.41 Aligned_cols=202 Identities=13% Similarity=0.071 Sum_probs=128.6
Q ss_pred ccEEEEecCccccCCcCCCCceEEeCccccCCCCCCChhhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhC
Q psy15582 223 KTLLFISTSWLLTYPRPVFPNTILLGPIHLNNPKPLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQF 302 (477)
Q Consensus 223 ~~~~l~~s~~~l~~~~~~~~~~~~vG~~~~~~~~~~~~~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~ 302 (477)
++.+++.....-+......-++.++|--..+.-...... . ++. +.++|.+--||.... ....+..+++++..+
T Consensus 161 a~~v~~~~~~t~~~l~~~g~k~~~vGnPv~d~l~~~~~~--~-l~~-~~~~lllLpGSR~ae---~~~~lp~~l~al~~L 233 (396)
T TIGR03492 161 CLAVFVRDRLTARDLRRQGVRASYLGNPMMDGLEPPERK--P-LLT-GRFRIALLPGSRPPE---AYRNLKLLLRALEAL 233 (396)
T ss_pred hCEEeCCCHHHHHHHHHCCCeEEEeCcCHHhcCcccccc--c-cCC-CCCEEEEECCCCHHH---HHccHHHHHHHHHHH
Confidence 455555543333322222237888886554431111111 1 222 456777777776441 122334555555544
Q ss_pred ---CCceEEEEecCCC-CC---------CCC--------------CCeEEeecCChh-hhhcCCCceEEEEcCChhHHHH
Q psy15582 303 ---PRHRIIWKWEEDI-LP---------DLP--------------SNVICRKWLPQH-DILAHPKVKLFIMQGGLQSSQE 354 (477)
Q Consensus 303 ---~~~~~l~~~~~~~-~~---------~~~--------------~nv~i~~~vp~~-~lL~h~~~~~~I~hgG~~s~~E 354 (477)
++..|++.+.++. .+ ... +++.+..+..+. .++ ..+|++|+..|..| .|
T Consensus 234 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l--~~ADlvI~rSGt~T-~E 310 (396)
T TIGR03492 234 PDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEIL--HWADLGIAMAGTAT-EQ 310 (396)
T ss_pred hhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHH--HhCCEEEECcCHHH-HH
Confidence 4588998874321 11 111 235666666554 467 56999999999766 99
Q ss_pred HHHhCCcEEeccCCcchHHHHHHHHHc----CceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHH-HHHHHhhcCCCChH
Q psy15582 355 AIHFGVPMIGIPFFADQDTNVRKLESM----DVARFLEYENITAETLVTLMKSILYNETVYRKSQ-VYSKLSNTQMMSPK 429 (477)
Q Consensus 355 al~~GvP~i~~P~~~dQ~~na~~~~~~----G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~-~~~~~~~~~~~~~~ 429 (477)
++..|+|+|++|..++|. |+..+++. |.++.+.. .+.+.+.+++.++++|++.++++. +..+++.. .++.
T Consensus 311 ~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~--~~~~~l~~~l~~ll~d~~~~~~~~~~~~~~lg~--~~a~ 385 (396)
T TIGR03492 311 AVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLAS--KNPEQAAQVVRQLLADPELLERCRRNGQERMGP--PGAS 385 (396)
T ss_pred HHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCC--CCHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCC--CCHH
Confidence 999999999999888887 99888774 77777764 367999999999999988887776 44455544 3778
Q ss_pred HHHHHHHHHH
Q psy15582 430 DTAVWWIEYV 439 (477)
Q Consensus 430 ~~a~~~ie~~ 439 (477)
+++++.|+..
T Consensus 386 ~~ia~~i~~~ 395 (396)
T TIGR03492 386 ARIAESILKQ 395 (396)
T ss_pred HHHHHHHHHh
Confidence 8888887654
No 47
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.38 E-value=5.1e-10 Score=112.38 Aligned_cols=143 Identities=10% Similarity=0.063 Sum_probs=94.2
Q ss_pred CceEEEecCC-cccCCcccHHHHHHHHHHHhhCCCceEEEEecCCC----------------CC--C---CCCCeEEeec
Q psy15582 271 DGVIYFSLGT-NMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI----------------LP--D---LPSNVICRKW 328 (477)
Q Consensus 271 ~~~V~vs~Gs-~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~----------------~~--~---~~~nv~i~~~ 328 (477)
+..+++..|. ....++ -..+++++....++.+++++++..++.. .. . ..++|++.++
T Consensus 210 ~~~~i~~vgR~l~~~Kg-~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~ 288 (396)
T cd03818 210 GDEVITFVARNLEPYRG-FHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGR 288 (396)
T ss_pred CCeEEEEECCCcccccC-HHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCC
Confidence 3445556674 443322 2445555544444556688888775210 00 1 2468999999
Q ss_pred CChhh---hhcCCCceEEEE---cCC-hhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHH
Q psy15582 329 LPQHD---ILAHPKVKLFIM---QGG-LQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLM 401 (477)
Q Consensus 329 vp~~~---lL~h~~~~~~I~---hgG-~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al 401 (477)
+|+.+ ++ ..+++++. +.| ..++.|||++|+|+|+... ......+++...|..++.+ +++++.++|
T Consensus 289 v~~~~~~~~l--~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~~~G~lv~~~--d~~~la~~i 360 (396)
T cd03818 289 VPYDQYLALL--QVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDGENGLLVDFF--DPDALAAAV 360 (396)
T ss_pred CCHHHHHHHH--HhCcEEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccCCceEEcCCC--CHHHHHHHH
Confidence 99765 45 45787773 222 2589999999999998754 3445556666678888755 799999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhh
Q psy15582 402 KSILYNETVYRKSQVYSKLSN 422 (477)
Q Consensus 402 ~~ll~~~~~~~~a~~~~~~~~ 422 (477)
.++++|++.++++.+.++...
T Consensus 361 ~~ll~~~~~~~~l~~~ar~~~ 381 (396)
T cd03818 361 IELLDDPARRARLRRAARRTA 381 (396)
T ss_pred HHHHhCHHHHHHHHHHHHHHH
Confidence 999999887777666555443
No 48
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.37 E-value=4.4e-10 Score=110.02 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=98.0
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhh-CCCceEEEEecCCCCC----------CCCCCeEEeecCChh-hhhcC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQ-FPRHRIIWKWEEDILP----------DLPSNVICRKWLPQH-DILAH 337 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~-~~~~~~l~~~~~~~~~----------~~~~nv~i~~~vp~~-~lL~h 337 (477)
.++.+++..|+....+ ..+.+-..++.+.+ .+++++++..++.... ...++|.+.++..+. .++
T Consensus 186 ~~~~~i~~~G~~~~~k--~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~-- 261 (359)
T cd03808 186 EDDPVFLFVARLLKDK--GIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELL-- 261 (359)
T ss_pred CCCcEEEEEecccccc--CHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHH--
Confidence 4667888889877644 23333333344332 3457888777654321 234688998886554 466
Q ss_pred CCceEEEEcC----ChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHH
Q psy15582 338 PKVKLFIMQG----GLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRK 413 (477)
Q Consensus 338 ~~~~~~I~hg----G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~ 413 (477)
.+++++|... ..+++.||+++|+|+|+.+..+ ....+++.+.|..++.+ +++++.+++.++++|++.+++
T Consensus 262 ~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~~~g~~~~~~--~~~~~~~~i~~l~~~~~~~~~ 335 (359)
T cd03808 262 AAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDGVNGFLVPPG--DAEALADAIERLIEDPELRAR 335 (359)
T ss_pred HhccEEEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcCcceEEECCC--CHHHHHHHHHHHHhCHHHHHH
Confidence 4588888644 3588999999999999876543 34556667788888755 789999999999999887777
Q ss_pred HHHHHHHh
Q psy15582 414 SQVYSKLS 421 (477)
Q Consensus 414 a~~~~~~~ 421 (477)
+.+.++..
T Consensus 336 ~~~~~~~~ 343 (359)
T cd03808 336 MGQAARKR 343 (359)
T ss_pred HHHHHHHH
Confidence 66665555
No 49
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.37 E-value=7.5e-10 Score=107.85 Aligned_cols=155 Identities=13% Similarity=0.135 Sum_probs=100.9
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC---------CCCCCeEEeecCChh-hhhcCCC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP---------DLPSNVICRKWLPQH-DILAHPK 339 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~~-~lL~h~~ 339 (477)
.++.+++..|+....++ ...+++.+.+..+..+++++++...+.... +..+++.+.++.+.. .++ .+
T Consensus 176 ~~~~~i~~~g~~~~~K~-~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~ 252 (348)
T cd03820 176 LKSKRILAVGRLVPQKG-FDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYY--AK 252 (348)
T ss_pred CCCcEEEEEEeeccccC-HHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHH--Hh
Confidence 45667777888766331 133333333222234557887776654321 346788888885543 466 45
Q ss_pred ceEEEEcC----ChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcC-ceEEccCCCCCHHHHHHHHHHHhcCHHHHHHH
Q psy15582 340 VKLFIMQG----GLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMD-VARFLEYENITAETLVTLMKSILYNETVYRKS 414 (477)
Q Consensus 340 ~~~~I~hg----G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G-~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a 414 (477)
++++|... ..+++.||+++|+|+|+.+..+.+ ..+.+.| .|..++.. +.+++.+++.++++|++.++++
T Consensus 253 ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~~~~g~~~~~~--~~~~~~~~i~~ll~~~~~~~~~ 326 (348)
T cd03820 253 ASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIEDGVNGLLVPNG--DVEALAEALLRLMEDEELRKRM 326 (348)
T ss_pred CCEEEeCccccccCHHHHHHHHcCCCEEEecCCCch----HhhhccCcceEEeCCC--CHHHHHHHHHHHHcCHHHHHHH
Confidence 88888654 257899999999999987654432 2344445 88888754 7899999999999999988888
Q ss_pred HHHHHHhhcCCCChHHHHHH
Q psy15582 415 QVYSKLSNTQMMSPKDTAVW 434 (477)
Q Consensus 415 ~~~~~~~~~~~~~~~~~a~~ 434 (477)
.+.++....+ ++....+.+
T Consensus 327 ~~~~~~~~~~-~~~~~~~~~ 345 (348)
T cd03820 327 GANARESAER-FSIENIIKQ 345 (348)
T ss_pred HHHHHHHHHH-hCHHHHHHH
Confidence 7776555443 555444433
No 50
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.37 E-value=2.5e-10 Score=113.42 Aligned_cols=156 Identities=11% Similarity=0.148 Sum_probs=104.0
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC---------CCCCCeEEeecCChh-hhhcCCC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP---------DLPSNVICRKWLPQH-DILAHPK 339 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~~-~lL~h~~ 339 (477)
.++.+++.+|.....++ ...+++++.....+.+ .++++...+.... +..+++.+.++.++. .++ ..
T Consensus 195 ~~~~~il~~g~l~~~K~-~~~li~a~~~l~~~~~-~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~ 270 (371)
T cd04962 195 EGEKVLIHISNFRPVKR-IDDVIRIFAKVRKEVP-ARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELL--SI 270 (371)
T ss_pred CCCeEEEEecccccccC-HHHHHHHHHHHHhcCC-ceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHH--Hh
Confidence 45677888888876442 2344444333323334 7888877664321 346789999988764 466 45
Q ss_pred ceEEEE----cCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHH
Q psy15582 340 VKLFIM----QGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQ 415 (477)
Q Consensus 340 ~~~~I~----hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~ 415 (477)
++++|. -|...++.||+++|+|+|+.... ..+..+++...|..++.+ +.+++.+++.++++|+..+++++
T Consensus 271 ~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~~~G~~~~~~--~~~~l~~~i~~l~~~~~~~~~~~ 344 (371)
T cd04962 271 ADLFLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHGETGFLVDVG--DVEAMAEYALSLLEDDELWQEFS 344 (371)
T ss_pred cCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCCCceEEcCCC--CHHHHHHHHHHHHhCHHHHHHHH
Confidence 888883 34557999999999999987553 355566666688887755 78999999999999988777776
Q ss_pred HHHHHhhcCCCChHHHHHHH
Q psy15582 416 VYSKLSNTQMMSPKDTAVWW 435 (477)
Q Consensus 416 ~~~~~~~~~~~~~~~~a~~~ 435 (477)
+.++....+.++....+..+
T Consensus 345 ~~~~~~~~~~fs~~~~~~~~ 364 (371)
T cd04962 345 RAARNRAAERFDSERIVPQY 364 (371)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 66665422225544444333
No 51
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.36 E-value=1.7e-10 Score=114.31 Aligned_cols=152 Identities=12% Similarity=0.046 Sum_probs=100.4
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC--------CCCCCeEEeecCChhh---hhcCC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP--------DLPSNVICRKWLPQHD---ILAHP 338 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~--------~~~~nv~i~~~vp~~~---lL~h~ 338 (477)
.++.+++..|+....+ ..+.+-..++.+.+.+++++++...+.... ...+|+.+.+++++.+ ++ .
T Consensus 218 ~~~~~i~~~G~~~~~k--~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~--~ 293 (394)
T cd03794 218 DDKFVVLYAGNIGRAQ--GLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELL--A 293 (394)
T ss_pred CCcEEEEEecCccccc--CHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHH--H
Confidence 4677888888876643 223333333333333447877766554321 2347899999998754 56 4
Q ss_pred CceEEEEcCC---------hhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHH
Q psy15582 339 KVKLFIMQGG---------LQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNET 409 (477)
Q Consensus 339 ~~~~~I~hgG---------~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~ 409 (477)
.++++|.... .+++.||+++|+|+|+.+..+.+. .+.+.+.|..++.+ +.+++.++|.++++|++
T Consensus 294 ~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~ 367 (394)
T cd03794 294 AADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEEAGAGLVVPPG--DPEALAAAILELLDDPE 367 (394)
T ss_pred hhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhccCCcceEeCCC--CHHHHHHHHHHHHhChH
Confidence 5888885322 345799999999999998765433 33344788888755 78999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCChHHH
Q psy15582 410 VYRKSQVYSKLSNTQMMSPKDT 431 (477)
Q Consensus 410 ~~~~a~~~~~~~~~~~~~~~~~ 431 (477)
.++++.+.++....+.++....
T Consensus 368 ~~~~~~~~~~~~~~~~~s~~~~ 389 (394)
T cd03794 368 ERAEMGENGRRYVEEKFSREKL 389 (394)
T ss_pred HHHHHHHHHHHHHHHhhcHHHH
Confidence 8777776666554432444333
No 52
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.36 E-value=2.3e-10 Score=112.43 Aligned_cols=142 Identities=11% Similarity=0.063 Sum_probs=98.7
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC------CCCCCeEEeecCChhh---hhcCCCc
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP------DLPSNVICRKWLPQHD---ILAHPKV 340 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~------~~~~nv~i~~~vp~~~---lL~h~~~ 340 (477)
.++.+++..|+....+ ..+.+-..++.+.+ +++++++...+.... ...+++++.+++++.+ ++ .++
T Consensus 189 ~~~~~i~~~G~~~~~k--~~~~li~~~~~l~~-~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~--~~a 263 (359)
T cd03823 189 GGRLRFGFIGQLTPHK--GVDLLLEAFKRLPR-GDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFY--AEI 263 (359)
T ss_pred CCceEEEEEecCcccc--CHHHHHHHHHHHHh-cCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHH--HhC
Confidence 4667778889876633 22332223333333 358888877664322 2358999999997654 56 458
Q ss_pred eEEEE-----cCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHH
Q psy15582 341 KLFIM-----QGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQ 415 (477)
Q Consensus 341 ~~~I~-----hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~ 415 (477)
+++|. .|...++.||+++|+|+|+.+.. .....+++.+.|..++.. +.+++.+++.++++|++.++.+.
T Consensus 264 d~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~~~g~~~~~~--d~~~l~~~i~~l~~~~~~~~~~~ 337 (359)
T cd03823 264 DVLVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDGVNGLLFPPG--DAEDLAAALERLIDDPDLLERLR 337 (359)
T ss_pred CEEEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCCCcEEEECCC--CHHHHHHHHHHHHhChHHHHHHH
Confidence 88883 34446899999999999987653 356667776789888765 68999999999999988777776
Q ss_pred HHHHHhh
Q psy15582 416 VYSKLSN 422 (477)
Q Consensus 416 ~~~~~~~ 422 (477)
+.++...
T Consensus 338 ~~~~~~~ 344 (359)
T cd03823 338 AGIEPPR 344 (359)
T ss_pred HhHHHhh
Confidence 6555443
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.31 E-value=2.4e-09 Score=104.91 Aligned_cols=141 Identities=15% Similarity=0.220 Sum_probs=97.3
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC---------CCCCCCeEEeecCChhh---hhcC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL---------PDLPSNVICRKWLPQHD---ILAH 337 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~---------~~~~~nv~i~~~vp~~~---lL~h 337 (477)
.++.+++.+|+....++ ....++.+.....+.+++++++..++... ...++++.+.+++++.+ ++
T Consensus 197 ~~~~~i~~~g~~~~~k~-~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~-- 273 (374)
T cd03801 197 EDEPVILFVGRLVPRKG-VDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALY-- 273 (374)
T ss_pred CCCeEEEEecchhhhcC-HHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHH--
Confidence 45677888888765332 12333333222223234777766654321 13578999999997543 56
Q ss_pred CCceEEEE----cCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHH
Q psy15582 338 PKVKLFIM----QGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRK 413 (477)
Q Consensus 338 ~~~~~~I~----hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~ 413 (477)
..++++|. .|..+++.||+++|+|+|+.+. ...+..+++.+.|..++.. +++++.+++.++++|++.++.
T Consensus 274 ~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~ 347 (374)
T cd03801 274 AAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDGETGLLVPPG--DPEALAEAILRLLDDPELRRR 347 (374)
T ss_pred HhcCEEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCCcceEEeCCC--CHHHHHHHHHHHHcChHHHHH
Confidence 45888884 3566899999999999998865 3456666667888888754 689999999999999887777
Q ss_pred HHHHHH
Q psy15582 414 SQVYSK 419 (477)
Q Consensus 414 a~~~~~ 419 (477)
+.+.++
T Consensus 348 ~~~~~~ 353 (374)
T cd03801 348 LGEAAR 353 (374)
T ss_pred HHHHHH
Confidence 766665
No 54
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.30 E-value=2.1e-09 Score=105.92 Aligned_cols=140 Identities=11% Similarity=0.127 Sum_probs=99.7
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC---------CCCCCCeEEeecCChhh---hhcC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL---------PDLPSNVICRKWLPQHD---ILAH 337 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~---------~~~~~nv~i~~~vp~~~---lL~h 337 (477)
.++.+++..|+.... .....+++++++..+.++++..+++.. ....+||.+.+++|+.+ ++
T Consensus 189 ~~~~~i~~~G~~~~~-----K~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~-- 261 (357)
T cd03795 189 AGRPFFLFVGRLVYY-----KGLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALL-- 261 (357)
T ss_pred CCCcEEEEecccccc-----cCHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHH--
Confidence 456678888987653 334456666666655888887766431 13567999999999754 56
Q ss_pred CCceEEEE------cCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHH-cCceEEccCCCCCHHHHHHHHHHHhcCHHH
Q psy15582 338 PKVKLFIM------QGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLES-MDVARFLEYENITAETLVTLMKSILYNETV 410 (477)
Q Consensus 338 ~~~~~~I~------hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~-~G~g~~l~~~~~~~~~l~~al~~ll~~~~~ 410 (477)
..+++++. -|...++.||+++|+|+|+....+.. ..+++ .+.|...+.+ +.+++.++|.++++|++.
T Consensus 262 ~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~~~g~~~~~~--d~~~~~~~i~~l~~~~~~ 335 (357)
T cd03795 262 AACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHGVTGLVVPPG--DPAALAEAIRRLLEDPEL 335 (357)
T ss_pred HhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCCCceEEeCCC--CHHHHHHHHHHHHHCHHH
Confidence 45888872 23346799999999999988655443 33333 6788888754 799999999999999887
Q ss_pred HHHHHHHHHHhh
Q psy15582 411 YRKSQVYSKLSN 422 (477)
Q Consensus 411 ~~~a~~~~~~~~ 422 (477)
++++++.++..-
T Consensus 336 ~~~~~~~~~~~~ 347 (357)
T cd03795 336 RERLGEAARERA 347 (357)
T ss_pred HHHHHHHHHHHH
Confidence 777766665543
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.29 E-value=7e-10 Score=109.43 Aligned_cols=144 Identities=13% Similarity=0.164 Sum_probs=97.2
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC---------CCCCCCeEEeecCChhh---hhcC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL---------PDLPSNVICRKWLPQHD---ILAH 337 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~---------~~~~~nv~i~~~vp~~~---lL~h 337 (477)
.++.+++..|+....++ ...+++.+.+...+.+++++++..++... .+..+|+.+.+++|+.+ ++
T Consensus 200 ~~~~~i~~~G~~~~~k~-~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~-- 276 (374)
T cd03817 200 EDEPVLLYVGRLAKEKN-IDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYY-- 276 (374)
T ss_pred CCCeEEEEEeeeecccC-HHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHH--
Confidence 45677788888765432 13334333333333245888887765431 14568999999998765 56
Q ss_pred CCceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHH
Q psy15582 338 PKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRK 413 (477)
Q Consensus 338 ~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~ 413 (477)
..+++++.. |..+++.||+++|+|+|+.+. ...+..+++.+.|..++.. +. ++.+++.+++++++.++.
T Consensus 277 ~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~~~g~~~~~~--~~-~~~~~i~~l~~~~~~~~~ 349 (374)
T cd03817 277 KAADLFVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADGENGFLFPPG--DE-ALAEALLRLLQDPELRRR 349 (374)
T ss_pred HHcCEEEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecCceeEEeCCC--CH-HHHHHHHHHHhChHHHHH
Confidence 348888843 445789999999999998764 3355666777889888754 33 899999999999876665
Q ss_pred HHHHHHHhhc
Q psy15582 414 SQVYSKLSNT 423 (477)
Q Consensus 414 a~~~~~~~~~ 423 (477)
+.+.++....
T Consensus 350 ~~~~~~~~~~ 359 (374)
T cd03817 350 LSKNAEESAE 359 (374)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 56
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.29 E-value=1.1e-09 Score=109.70 Aligned_cols=143 Identities=10% Similarity=0.056 Sum_probs=99.3
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC---------------CCCCCCeEEeecCChhh-
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL---------------PDLPSNVICRKWLPQHD- 333 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~---------------~~~~~nv~i~~~vp~~~- 333 (477)
.+..+++..|+.....+ ...+++++.+...+.+++++++..++... .+..+|+.+.+++|+.+
T Consensus 218 ~~~~~i~~~gr~~~~k~-~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 296 (398)
T cd03800 218 PDKPRILAVGRLDPRKG-IDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDL 296 (398)
T ss_pred CCCcEEEEEcccccccC-HHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHH
Confidence 45677888898776432 23333333333223345888888765431 12357899999999865
Q ss_pred --hhcCCCceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcC
Q psy15582 334 --ILAHPKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYN 407 (477)
Q Consensus 334 --lL~h~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 407 (477)
++ ..+++++.. |-..++.||+++|+|+|+.+..+ ....+++.+.|..++.. +++++.++|.++++|
T Consensus 297 ~~~~--~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~~~g~~~~~~--~~~~l~~~i~~l~~~ 368 (398)
T cd03800 297 PALY--RAADVFVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDGVTGLLVDPR--DPEALAAALRRLLTD 368 (398)
T ss_pred HHHH--HhCCEEEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCCCCeEEeCCC--CHHHHHHHHHHHHhC
Confidence 46 458998843 33478999999999999876543 55567777899998755 799999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy15582 408 ETVYRKSQVYSKLS 421 (477)
Q Consensus 408 ~~~~~~a~~~~~~~ 421 (477)
++.++++.+.++..
T Consensus 369 ~~~~~~~~~~a~~~ 382 (398)
T cd03800 369 PALRRRLSRAGLRR 382 (398)
T ss_pred HHHHHHHHHHHHHH
Confidence 87776666655444
No 57
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.28 E-value=1.6e-09 Score=106.98 Aligned_cols=151 Identities=11% Similarity=0.094 Sum_probs=97.1
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC---------CCCCCeEEeecCChh-hhhcCCC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP---------DLPSNVICRKWLPQH-DILAHPK 339 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~~-~lL~h~~ 339 (477)
.++.+++..|+....+. ...+++++.+...+.+++++++..++...+ +..+|+.+.++..+. .++ ..
T Consensus 186 ~~~~~~l~~g~~~~~kg-~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~ 262 (360)
T cd04951 186 NDTFVILAVGRLVEAKD-YPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYY--NA 262 (360)
T ss_pred CCCEEEEEEeeCchhcC-cHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHH--Hh
Confidence 45678888888765432 244444444444444568888887664321 346789999988664 466 45
Q ss_pred ceEEEEcC----ChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHh-cCHHHHHHH
Q psy15582 340 VKLFIMQG----GLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSIL-YNETVYRKS 414 (477)
Q Consensus 340 ~~~~I~hg----G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll-~~~~~~~~a 414 (477)
+++++.-. ..+++.||+++|+|+|+... ..+...+++. |..+..+ +++++.+++.+++ .++.+++.+
T Consensus 263 ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~i~~~--g~~~~~~--~~~~~~~~i~~ll~~~~~~~~~~ 334 (360)
T cd04951 263 ADLFVLSSAWEGFGLVVAEAMACELPVVATDA----GGVREVVGDS--GLIVPIS--DPEALANKIDEILKMSGEERDII 334 (360)
T ss_pred hceEEecccccCCChHHHHHHHcCCCEEEecC----CChhhEecCC--ceEeCCC--CHHHHHHHHHHHHhCCHHHHHHH
Confidence 88887543 35789999999999997643 4455555553 4444433 7899999999998 456666666
Q ss_pred HHHHHHhhcCCCChHHHH
Q psy15582 415 QVYSKLSNTQMMSPKDTA 432 (477)
Q Consensus 415 ~~~~~~~~~~~~~~~~~a 432 (477)
.+..+.... .++....+
T Consensus 335 ~~~~~~~~~-~~s~~~~~ 351 (360)
T cd04951 335 GARRERIVK-KFSINSIV 351 (360)
T ss_pred HHHHHHHHH-hcCHHHHH
Confidence 655333433 25544333
No 58
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.24 E-value=2.6e-09 Score=105.88 Aligned_cols=142 Identities=13% Similarity=0.142 Sum_probs=98.7
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC---------CCCCCeEEeecCChhh---hhcCC
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP---------DLPSNVICRKWLPQHD---ILAHP 338 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~~~---lL~h~ 338 (477)
++.+++..|+....++ ...+++++.+..++.+++++++...+...+ +..+++++.+++|+.+ ++ .
T Consensus 187 ~~~~i~~~G~~~~~K~-~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~--~ 263 (367)
T cd05844 187 RPPRILFVGRFVEKKG-PLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELM--R 263 (367)
T ss_pred CCcEEEEEEeeccccC-hHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHH--H
Confidence 4556677788766432 234444444333444558888777653211 2578899999998754 46 4
Q ss_pred CceEEEEc----------CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 339 KVKLFIMQ----------GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 339 ~~~~~I~h----------gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
.++++|.. |..+++.||+++|+|+|+.+..+ ++..+.+.+.|..++.. +++++.++|.++++|+
T Consensus 264 ~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~~~g~~~~~~--d~~~l~~~i~~l~~~~ 337 (367)
T cd05844 264 RARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDGETGLLVPEG--DVAALAAALGRLLADP 337 (367)
T ss_pred hCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecCCeeEEECCC--CHHHHHHHHHHHHcCH
Confidence 58888742 34689999999999999887643 56667777889888754 7899999999999998
Q ss_pred HHHHHHHHHHHHh
Q psy15582 409 TVYRKSQVYSKLS 421 (477)
Q Consensus 409 ~~~~~a~~~~~~~ 421 (477)
+.++++.+.++..
T Consensus 338 ~~~~~~~~~a~~~ 350 (367)
T cd05844 338 DLRARMGAAGRRR 350 (367)
T ss_pred HHHHHHHHHHHHH
Confidence 8776665555443
No 59
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.23 E-value=2.8e-08 Score=100.32 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=94.7
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC---------CCCCCeEEeecCChhh---hhcC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP---------DLPSNVICRKWLPQHD---ILAH 337 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~~~---lL~h 337 (477)
.++.+++..|+....++ -..+++++ +.+.+.+++++++..++...+ ++ +||.+.+++|+.+ ++
T Consensus 227 ~~~~~i~~~G~l~~~kg-~~~li~a~-~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l-~~v~f~G~~~~~~~~~~~-- 301 (412)
T PRK10307 227 DGKKIVLYSGNIGEKQG-LELVIDAA-RRLRDRPDLIFVICGQGGGKARLEKMAQCRGL-PNVHFLPLQPYDRLPALL-- 301 (412)
T ss_pred CCCEEEEEcCccccccC-HHHHHHHH-HHhccCCCeEEEEECCChhHHHHHHHHHHcCC-CceEEeCCCCHHHHHHHH--
Confidence 35567777888866332 12333332 223333557888777664321 23 4899999998754 56
Q ss_pred CCceEEEE--c-CC-----hhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHH
Q psy15582 338 PKVKLFIM--Q-GG-----LQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNET 409 (477)
Q Consensus 338 ~~~~~~I~--h-gG-----~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~ 409 (477)
..+|+++. . ++ .+.+.|++++|+|+|+....+.. ....++ +.|+.++.+ ++++++++|.++++|++
T Consensus 302 ~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~--~~G~~~~~~--d~~~la~~i~~l~~~~~ 375 (412)
T PRK10307 302 KMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE--GIGVCVEPE--SVEALVAAIAALARQAL 375 (412)
T ss_pred HhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh--CCcEEeCCC--CHHHHHHHHHHHHhCHH
Confidence 44776652 2 22 13478999999999988754421 122333 788888765 78999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCChH
Q psy15582 410 VYRKSQVYSKLSNTQMMSPK 429 (477)
Q Consensus 410 ~~~~a~~~~~~~~~~~~~~~ 429 (477)
.++++.+.++....+.++..
T Consensus 376 ~~~~~~~~a~~~~~~~fs~~ 395 (412)
T PRK10307 376 LRPKLGTVAREYAERTLDKE 395 (412)
T ss_pred HHHHHHHHHHHHHHHHcCHH
Confidence 77777776665433224443
No 60
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.23 E-value=1.1e-09 Score=107.85 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=95.3
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhC-CCceEEEEecCCCCC---------CCCCCeEEeecCChhh---hhc
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQF-PRHRIIWKWEEDILP---------DLPSNVICRKWLPQHD---ILA 336 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~-~~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~~~---lL~ 336 (477)
.++.+++.+|+....+ ..+.+-..++.+.+. +++++++...++... +.++||++.+++|+.+ ++
T Consensus 177 ~~~~~i~~~g~~~~~k--~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~- 253 (355)
T cd03799 177 GEPLRILSVGRLVEKK--GLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELL- 253 (355)
T ss_pred CCCeEEEEEeeecccc--CHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHH-
Confidence 4566777888876533 223333333333332 347777776654321 3568999999998654 56
Q ss_pred CCCceEEEE----------cCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhc
Q psy15582 337 HPKVKLFIM----------QGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILY 406 (477)
Q Consensus 337 h~~~~~~I~----------hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~ 406 (477)
.++++++. -|..+++.||+++|+|+|+.+..+ ....+++...|..++.+ +.+++.++|.++++
T Consensus 254 -~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~~~g~~~~~~--~~~~l~~~i~~~~~ 326 (355)
T cd03799 254 -RAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDGETGLLVPPG--DPEALADAIERLLD 326 (355)
T ss_pred -HhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCCCceEEeCCC--CHHHHHHHHHHHHh
Confidence 45888876 455689999999999999876533 23345555588888755 78999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q psy15582 407 NETVYRKSQVYSKLS 421 (477)
Q Consensus 407 ~~~~~~~a~~~~~~~ 421 (477)
|+..++++.+.++..
T Consensus 327 ~~~~~~~~~~~a~~~ 341 (355)
T cd03799 327 DPELRREMGEAGRAR 341 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 987666665555443
No 61
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.23 E-value=8.8e-09 Score=103.16 Aligned_cols=141 Identities=12% Similarity=0.049 Sum_probs=97.1
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhC---CCceEEEEecCCCC------------------CCCCCCeEEeec
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQF---PRHRIIWKWEEDIL------------------PDLPSNVICRKW 328 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~---~~~~~l~~~~~~~~------------------~~~~~nv~i~~~ 328 (477)
.+..+++..|+....++ ...+++++.+...+. +++++++..+++.. ..+.++|.+.++
T Consensus 209 ~~~~~i~~~grl~~~Kg-~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~ 287 (392)
T cd03805 209 SGKKTFLSINRFERKKN-IALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPS 287 (392)
T ss_pred CCceEEEEEeeecccCC-hHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 46677888898876543 244444444443343 45888887765321 234679999999
Q ss_pred CChhh---hhcCCCceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHH
Q psy15582 329 LPQHD---ILAHPKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLM 401 (477)
Q Consensus 329 vp~~~---lL~h~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al 401 (477)
+|+.+ ++ ..+++++.. |-..++.||+++|+|+|+.-..+ ....+.+.+.|...+. +++++.++|
T Consensus 288 ~~~~~~~~~l--~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~~~g~~~~~---~~~~~a~~i 358 (392)
T cd03805 288 ISDSQKELLL--SSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDGETGFLCEP---TPEEFAEAM 358 (392)
T ss_pred CChHHHHHHH--hhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccCCceEEeCC---CHHHHHHHH
Confidence 99864 56 458888742 22367899999999999875543 3345656667887752 789999999
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q psy15582 402 KSILYNETVYRKSQVYSKL 420 (477)
Q Consensus 402 ~~ll~~~~~~~~a~~~~~~ 420 (477)
.+++++++.++++.+.++.
T Consensus 359 ~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 359 LKLANDPDLADRMGAAGRK 377 (392)
T ss_pred HHHHhChHHHHHHHHHHHH
Confidence 9999998777666665544
No 62
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.21 E-value=8e-09 Score=101.87 Aligned_cols=154 Identities=15% Similarity=0.149 Sum_probs=103.8
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC--------------CCCCCeEEeec-CChhh-
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP--------------DLPSNVICRKW-LPQHD- 333 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~--------------~~~~nv~i~~~-vp~~~- 333 (477)
.++.+++.+|+....++ ...+++++.+..++.+++++++..++.... .+.+||.+.+. +|+.+
T Consensus 183 ~~~~~i~~~G~~~~~K~-~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~ 261 (366)
T cd03822 183 DGRPVLLTFGLLRPYKG-LELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEEL 261 (366)
T ss_pred CCCeEEEEEeeccCCCC-HHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHH
Confidence 45667788898776442 244555554444444557777776543211 24578888864 88643
Q ss_pred --hhcCCCceEEEE----c--CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHh
Q psy15582 334 --ILAHPKVKLFIM----Q--GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSIL 405 (477)
Q Consensus 334 --lL~h~~~~~~I~----h--gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll 405 (477)
++ ..+++++. . |..+++.||+++|+|+|+.+..+ ...+...+.|..++.. +.+++.+++.+++
T Consensus 262 ~~~~--~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~~~~~~--d~~~~~~~l~~l~ 332 (366)
T cd03822 262 PELF--SAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGLLVPPG--DPAALAEAIRRLL 332 (366)
T ss_pred HHHH--hhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcEEEcCC--CHHHHHHHHHHHH
Confidence 56 55888883 2 44578999999999999987654 3445667788888755 6899999999999
Q ss_pred cCHHHHHHHHHHHHHhhcCCCChHHHHHH
Q psy15582 406 YNETVYRKSQVYSKLSNTQMMSPKDTAVW 434 (477)
Q Consensus 406 ~~~~~~~~a~~~~~~~~~~~~~~~~~a~~ 434 (477)
+|++.++++.+.++....+ ++....+..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~-~s~~~~~~~ 360 (366)
T cd03822 333 ADPELAQALRARAREYARA-MSWERVAER 360 (366)
T ss_pred cChHHHHHHHHHHHHHHhh-CCHHHHHHH
Confidence 9987777777766666554 454444433
No 63
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.20 E-value=5.4e-09 Score=103.00 Aligned_cols=154 Identities=15% Similarity=0.104 Sum_probs=100.9
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC-----------CCCCCCeEEeecCChhh---hh
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL-----------PDLPSNVICRKWLPQHD---IL 335 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~-----------~~~~~nv~i~~~vp~~~---lL 335 (477)
.++.+++.+|+....++ ...+++++.+...+.+++++++...+... ....+++.+.+++++.+ ++
T Consensus 201 ~~~~~i~~~G~~~~~K~-~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 279 (375)
T cd03821 201 PDKRIILFLGRLHPKKG-LDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAAL 279 (375)
T ss_pred CCCcEEEEEeCcchhcC-HHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHH
Confidence 46677888898766432 13333333332233345777776654321 13468999999999654 46
Q ss_pred cCCCceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHH
Q psy15582 336 AHPKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVY 411 (477)
Q Consensus 336 ~h~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~ 411 (477)
..++++|.. |-.+++.||+++|+|+|+.+..+ ....+.+ +.|...+. +.+++.++|.++++|++.+
T Consensus 280 --~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~~-~~~~~~~~---~~~~~~~~i~~l~~~~~~~ 349 (375)
T cd03821 280 --ADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIEY-GCGWVVDD---DVDALAAALRRALELPQRL 349 (375)
T ss_pred --hhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhhc-CceEEeCC---ChHHHHHHHHHHHhCHHHH
Confidence 458888753 33578999999999999886543 4444555 88887764 4599999999999998777
Q ss_pred HHHHHHHHHhhcCCCChHHHHHH
Q psy15582 412 RKSQVYSKLSNTQMMSPKDTAVW 434 (477)
Q Consensus 412 ~~a~~~~~~~~~~~~~~~~~a~~ 434 (477)
+++.+.++....+.++....+..
T Consensus 350 ~~~~~~~~~~~~~~~s~~~~~~~ 372 (375)
T cd03821 350 KAMGENGRALVEERFSWTAIAQQ 372 (375)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777666663333554444433
No 64
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.19 E-value=2.9e-08 Score=100.13 Aligned_cols=141 Identities=13% Similarity=0.175 Sum_probs=93.1
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhh-------CCCceEEEEecCCCCC---------CCCCCeEE-eecCChh
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQ-------FPRHRIIWKWEEDILP---------DLPSNVIC-RKWLPQH 332 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~-------~~~~~~l~~~~~~~~~---------~~~~nv~i-~~~vp~~ 332 (477)
++..++++.|.....+++ ..+++++. .+.+ .+|.++++..+|...+ ++ +|+.+ .+|+|..
T Consensus 230 ~~~~vi~~~grl~~~K~~-~~li~A~~-~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l-~~~~~~~g~~~~~ 306 (415)
T cd03816 230 ERPALLVSSTSWTPDEDF-GILLDALV-AYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKL-KKVTIRTPWLSAE 306 (415)
T ss_pred CCceEEEEeccccCCCCH-HHHHHHHH-HHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCC-CcEEEEcCcCCHH
Confidence 355677777887664421 33333332 2221 2457888777664321 22 45554 4688865
Q ss_pred h---hhcCCCceEEEE-c------CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHH
Q psy15582 333 D---ILAHPKVKLFIM-Q------GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMK 402 (477)
Q Consensus 333 ~---lL~h~~~~~~I~-h------gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~ 402 (477)
+ ++ ..+|+++. + |-.+++.||+++|+|+|+... ......+++.+.|..++ ++++++++|.
T Consensus 307 ~~~~~l--~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~~~G~lv~----d~~~la~~i~ 376 (415)
T cd03816 307 DYPKLL--ASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHGENGLVFG----DSEELAEQLI 376 (415)
T ss_pred HHHHHH--HhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCCCCEEEEC----CHHHHHHHHH
Confidence 4 46 56888874 1 124579999999999998754 34556777778898874 7999999999
Q ss_pred HHhcC---HHHHHHHHHHHHHhhc
Q psy15582 403 SILYN---ETVYRKSQVYSKLSNT 423 (477)
Q Consensus 403 ~ll~~---~~~~~~a~~~~~~~~~ 423 (477)
++++| ++.++++.+.++....
T Consensus 377 ~ll~~~~~~~~~~~m~~~~~~~~~ 400 (415)
T cd03816 377 DLLSNFPNRGKLNSLKKGAQEESE 400 (415)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhhh
Confidence 99998 7777777776666553
No 65
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.19 E-value=1.7e-08 Score=99.16 Aligned_cols=131 Identities=11% Similarity=0.133 Sum_probs=89.8
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhh-CCCceEEEEecCCCCC---------CCCCCeEEeecCChhh---hhc
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQ-FPRHRIIWKWEEDILP---------DLPSNVICRKWLPQHD---ILA 336 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~-~~~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~~~---lL~ 336 (477)
.++.+++..|+....++ ...+++ .++.+.+ .+++.+++...+.... ...+||.+.+++++.+ ++
T Consensus 200 ~~~~~i~~~g~~~~~k~-~~~li~-~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~- 276 (377)
T cd03798 200 EDKKVILFVGRLVPRKG-IDYLIE-ALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYY- 276 (377)
T ss_pred CCceEEEEeccCccccC-HHHHHH-HHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHH-
Confidence 46677888898776332 123333 3333332 2346666665543211 3467999999999754 56
Q ss_pred CCCceEEE----EcCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHH
Q psy15582 337 HPKVKLFI----MQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETV 410 (477)
Q Consensus 337 h~~~~~~I----~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~ 410 (477)
.+++++| +-|..+++.||+++|+|+|+.+..+ ....+++.+.|..++.. +.+++.+++.++++++..
T Consensus 277 -~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 277 -AAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITDGENGLLVPPG--DPEALAEAILRLLADPWL 347 (377)
T ss_pred -HhcCeeecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcCCcceeEECCC--CHHHHHHHHHHHhcCcHH
Confidence 4588887 3456688999999999999876543 45566777778888755 899999999999998774
No 66
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.17 E-value=5.2e-09 Score=106.10 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=84.7
Q ss_pred CeEEeecCChh-hhhcCCCceEEEE-----cCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHH
Q psy15582 322 NVICRKWLPQH-DILAHPKVKLFIM-----QGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAE 395 (477)
Q Consensus 322 nv~i~~~vp~~-~lL~h~~~~~~I~-----hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~ 395 (477)
++.+.+...+. .++ ..+|+++. -||..++.||+++|+|+|+.|..+++......+.+.|+++... +++
T Consensus 303 ~v~l~~~~~el~~~y--~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~----d~~ 376 (425)
T PRK05749 303 DVLLGDTMGELGLLY--AIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVE----DAE 376 (425)
T ss_pred cEEEEecHHHHHHHH--HhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEEC----CHH
Confidence 45555554443 356 56888543 2455679999999999999999888888888888888877754 789
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q psy15582 396 TLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVL 440 (477)
Q Consensus 396 ~l~~al~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~ 440 (477)
++.+++.++++|++.++++.+.++..-.+.....++..+.++..+
T Consensus 377 ~La~~l~~ll~~~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~~~l 421 (425)
T PRK05749 377 DLAKAVTYLLTDPDARQAYGEAGVAFLKQNQGALQRTLQLLEPYL 421 (425)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhc
Confidence 999999999999988888877776665433466677777776543
No 67
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.16 E-value=4.1e-08 Score=98.86 Aligned_cols=160 Identities=10% Similarity=0.010 Sum_probs=105.6
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCC--ceEEEEecCC-----CC---------CCCCCCeEEeecCChhh
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPR--HRIIWKWEED-----IL---------PDLPSNVICRKWLPQHD 333 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~--~~~l~~~~~~-----~~---------~~~~~nv~i~~~vp~~~ 333 (477)
.++.+++..|+....++ ...+++++.+..++.++ .++++..++. .. .++.++|++.+++++.+
T Consensus 217 ~~~~~i~~~G~l~~~K~-~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~ 295 (405)
T TIGR03449 217 LDTKVVAFVGRIQPLKA-PDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEE 295 (405)
T ss_pred CCCcEEEEecCCCcccC-HHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHH
Confidence 35677888899876442 24445544444444454 6666665421 10 13457899999998754
Q ss_pred ---hhcCCCceEEEE----cCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhc
Q psy15582 334 ---ILAHPKVKLFIM----QGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILY 406 (477)
Q Consensus 334 ---lL~h~~~~~~I~----hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~ 406 (477)
++ ..+|+++. -|...++.||+++|+|+|+....+ ....+++.+.|..++.. +.+++.++|.++++
T Consensus 296 ~~~~l--~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~--d~~~la~~i~~~l~ 367 (405)
T TIGR03449 296 LVHVY--RAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVADGETGLLVDGH--DPADWADALARLLD 367 (405)
T ss_pred HHHHH--HhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhccCCceEECCCC--CHHHHHHHHHHHHh
Confidence 57 45888874 244478999999999999876543 34456666788888755 78999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q psy15582 407 NETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVL 440 (477)
Q Consensus 407 ~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~ 440 (477)
|++.++++.+.++....+ ++....+ +-++.++
T Consensus 368 ~~~~~~~~~~~~~~~~~~-fsw~~~~-~~~~~~y 399 (405)
T TIGR03449 368 DPRTRIRMGAAAVEHAAG-FSWAATA-DGLLSSY 399 (405)
T ss_pred CHHHHHHHHHHHHHHHHh-CCHHHHH-HHHHHHH
Confidence 988777776666655433 5544444 3343333
No 68
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.13 E-value=1.6e-08 Score=99.67 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=94.9
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC---------CCCCCCeEEeecCChh-hhhcCCC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL---------PDLPSNVICRKWLPQH-DILAHPK 339 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~---------~~~~~nv~i~~~vp~~-~lL~h~~ 339 (477)
.++.+++..|+....++ -..+++++....++.+++++++..+++.. .++++++++.++..+. .++ ..
T Consensus 190 ~~~~~i~~vGr~~~~Kg-~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~ 266 (358)
T cd03812 190 EDKFVIGHVGRFSEQKN-HEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELL--QA 266 (358)
T ss_pred CCCEEEEEEeccccccC-hHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHH--Hh
Confidence 46677888898876442 13334433333334455888887766432 1456889999986553 467 45
Q ss_pred ceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHH
Q psy15582 340 VKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQ 415 (477)
Q Consensus 340 ~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~ 415 (477)
++++|.- |-.+++.|||++|+|+|+....+ ....+++ +.|.....+ ++++++++|.++++|++.++++.
T Consensus 267 adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~-~~~~~~~~~--~~~~~a~~i~~l~~~~~~~~~~~ 339 (358)
T cd03812 267 MDVFLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD-LVKFLSLDE--SPEIWAEEILKLKSEDRRERSSE 339 (358)
T ss_pred cCEEEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc-CccEEeCCC--CHHHHHHHHHHHHhCcchhhhhh
Confidence 8888854 55689999999999999876544 3334444 666665433 68999999999999998777665
Q ss_pred HHHH
Q psy15582 416 VYSK 419 (477)
Q Consensus 416 ~~~~ 419 (477)
....
T Consensus 340 ~~~~ 343 (358)
T cd03812 340 SIKK 343 (358)
T ss_pred hhhh
Confidence 5433
No 69
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.11 E-value=7.5e-08 Score=96.74 Aligned_cols=128 Identities=15% Similarity=0.123 Sum_probs=84.0
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC---------CCCCCeEEeecCChhh---hhcC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP---------DLPSNVICRKWLPQHD---ILAH 337 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~~~---lL~h 337 (477)
.++.+++..|.....++ ...+++++....++.+++++++...+...+ ++.++|.+.+++|+.+ ++
T Consensus 191 ~~~~~i~~~grl~~~Kg-~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l-- 267 (398)
T cd03796 191 NDKITIVVISRLVYRKG-IDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVL-- 267 (398)
T ss_pred CCceEEEEEeccchhcC-HHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHH--
Confidence 35677888888766432 233444443333345668888877764321 3467899999998654 56
Q ss_pred CCceEEEEc---CC-hhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 338 PKVKLFIMQ---GG-LQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 338 ~~~~~~I~h---gG-~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
+.+|+++.- -| ..++.||+++|+|+|+.+..+ ....+++ |.+.... . +.+++.+++.+++++.
T Consensus 268 ~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~-~~~~~~~-~--~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 268 VQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP-DMILLAE-P--DVESIVRKLEEAISIL 334 (398)
T ss_pred HhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC-CceeecC-C--CHHHHHHHHHHHHhCh
Confidence 558888743 23 259999999999999987643 2233333 4343333 2 7899999999999764
No 70
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.10 E-value=5.2e-08 Score=95.56 Aligned_cols=151 Identities=13% Similarity=0.128 Sum_probs=95.9
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC----------CCCCCCeEEeecCChh-hhhcCC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL----------PDLPSNVICRKWLPQH-DILAHP 338 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~----------~~~~~nv~i~~~vp~~-~lL~h~ 338 (477)
.++.+++..|+....+. ...+++++.....+.+++++++...+... .++.+++.+.+..++. .++ .
T Consensus 191 ~~~~~i~~~G~~~~~K~-~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~ 267 (365)
T cd03807 191 EDTFLIGIVARLHPQKD-HATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALL--N 267 (365)
T ss_pred CCCeEEEEecccchhcC-HHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHH--H
Confidence 45667788888776432 23444444333334455888887665321 1345688888766654 466 4
Q ss_pred CceEEEEcCC----hhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHH
Q psy15582 339 KVKLFIMQGG----LQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKS 414 (477)
Q Consensus 339 ~~~~~I~hgG----~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a 414 (477)
.+++++.... .+++.||+++|+|+|+.... .+...+.+ .|..++.+ +++++.+++.++++|++.++.+
T Consensus 268 ~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~----~~~e~~~~--~g~~~~~~--~~~~l~~~i~~l~~~~~~~~~~ 339 (365)
T cd03807 268 ALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVG----DNAELVGD--TGFLVPPG--DPEALAEAIEALLADPALRQAL 339 (365)
T ss_pred hCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCC----ChHHHhhc--CCEEeCCC--CHHHHHHHHHHHHhChHHHHHH
Confidence 5899886543 48999999999999987543 34445544 56666644 7899999999999987666555
Q ss_pred HHHHHHhhcCCCChHHH
Q psy15582 415 QVYSKLSNTQMMSPKDT 431 (477)
Q Consensus 415 ~~~~~~~~~~~~~~~~~ 431 (477)
.+.++....+.++....
T Consensus 340 ~~~~~~~~~~~~s~~~~ 356 (365)
T cd03807 340 GEAARERIEENFSIEAM 356 (365)
T ss_pred HHHHHHHHHHhCCHHHH
Confidence 54444433222444333
No 71
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.06 E-value=2.6e-07 Score=91.96 Aligned_cols=160 Identities=16% Similarity=0.137 Sum_probs=104.9
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCC----CceEEEEecCCCCC---------CCCCCeEEeecCChh-hhh
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFP----RHRIIWKWEEDILP---------DLPSNVICRKWLPQH-DIL 335 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~----~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~~-~lL 335 (477)
.++.++++.|.....++ ...+++++.+...+.+ ++++++...+...+ ++.+++.+.++..+. .++
T Consensus 192 ~~~~~i~~vGrl~~~Kg-~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 270 (374)
T TIGR03088 192 DESVVVGTVGRLQAVKD-QPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALM 270 (374)
T ss_pred CCCeEEEEEecCCcccC-HHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHH
Confidence 46778888899876542 3555555555554433 46788877664311 345678888876554 467
Q ss_pred cCCCceEEEE----cCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHH
Q psy15582 336 AHPKVKLFIM----QGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVY 411 (477)
Q Consensus 336 ~h~~~~~~I~----hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~ 411 (477)
..+|++|. -|-.+++.||+++|+|+|+....+ +...+++...|..++.+ +++++.+++.++++|+..+
T Consensus 271 --~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~~~g~~~~~~--d~~~la~~i~~l~~~~~~~ 342 (374)
T TIGR03088 271 --QALDLFVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHGVTGALVPPG--DAVALARALQPYVSDPAAR 342 (374)
T ss_pred --HhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCCCceEEeCCC--CHHHHHHHHHHHHhCHHHH
Confidence 45888883 255689999999999999977543 45556566678888755 7899999999999988766
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy15582 412 RKSQVYSKLSNTQMMSPKDTAVWWIEYV 439 (477)
Q Consensus 412 ~~a~~~~~~~~~~~~~~~~~a~~~ie~~ 439 (477)
+.+.+.++....+.++.... ++..+.+
T Consensus 343 ~~~~~~a~~~~~~~fs~~~~-~~~~~~~ 369 (374)
T TIGR03088 343 RAHGAAGRARAEQQFSINAM-VAAYAGL 369 (374)
T ss_pred HHHHHHHHHHHHHhCCHHHH-HHHHHHH
Confidence 65554444332222454444 3333333
No 72
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.05 E-value=5.6e-08 Score=94.69 Aligned_cols=134 Identities=15% Similarity=0.232 Sum_probs=90.8
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhC----CCceEEEEecCCCCC---------CCCCCeEEeecCChh-hhh
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQF----PRHRIIWKWEEDILP---------DLPSNVICRKWLPQH-DIL 335 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~----~~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~~-~lL 335 (477)
.++.+++..|+....+ ....++++++.+ ++.++++...+.... +..+++.+.++++.. .++
T Consensus 187 ~~~~~i~~~g~~~~~k-----~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 261 (353)
T cd03811 187 PDGPVILAVGRLSPQK-----GFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYL 261 (353)
T ss_pred CCceEEEEEecchhhc-----ChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHH
Confidence 4667888889876533 223333333332 247777766553211 346789999998764 466
Q ss_pred cCCCceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHH---HHHHHHHhcCH
Q psy15582 336 AHPKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETL---VTLMKSILYNE 408 (477)
Q Consensus 336 ~h~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l---~~al~~ll~~~ 408 (477)
..++++|.- |..+++.||+++|+|+|+.... .....+++.+.|...+.+ +.+.+ .+++.++++++
T Consensus 262 --~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 262 --KAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDGENGLLVPVG--DEAALAAAALALLDLLLDP 333 (353)
T ss_pred --HhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCCCceEEECCC--CHHHHHHHHHHHHhccCCh
Confidence 458888843 4467899999999999987553 556677788889988765 67777 66777777777
Q ss_pred HHHHHHHH
Q psy15582 409 TVYRKSQV 416 (477)
Q Consensus 409 ~~~~~a~~ 416 (477)
+.++++.+
T Consensus 334 ~~~~~~~~ 341 (353)
T cd03811 334 ELRERLAA 341 (353)
T ss_pred HHHHHHHH
Confidence 66666555
No 73
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.03 E-value=1.1e-07 Score=93.59 Aligned_cols=154 Identities=15% Similarity=0.131 Sum_probs=97.6
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC----------CCCCCCeEEeecCChhh---hhc
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL----------PDLPSNVICRKWLPQHD---ILA 336 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~----------~~~~~nv~i~~~vp~~~---lL~ 336 (477)
.++.+++..|+....++ ...+++.+.+.....++.++++...+... ...++++++.+++|+.+ ++
T Consensus 193 ~~~~~i~~~G~~~~~K~-~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~- 270 (365)
T cd03809 193 LPRPYFLYVGTIEPRKN-LERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALY- 270 (365)
T ss_pred CCCCeEEEeCCCccccC-HHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHH-
Confidence 45667778888876432 13333333333333333666666554321 23578999999998764 56
Q ss_pred CCCceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHH
Q psy15582 337 HPKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYR 412 (477)
Q Consensus 337 h~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~ 412 (477)
..+++++.. |..+++.||+++|+|+|+....+ ....+. ..|..+..+ +.+++.+++.++++|++.+.
T Consensus 271 -~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~--~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~ 341 (365)
T cd03809 271 -RGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAG--DAALYFDPL--DPEALAAAIERLLEDPALRE 341 (365)
T ss_pred -hhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceec--CceeeeCCC--CHHHHHHHHHHHhcCHHHHH
Confidence 447777633 44568999999999999876532 111222 245555544 78999999999999999888
Q ss_pred HHHHHHHHhhcCCCChHHHHHHH
Q psy15582 413 KSQVYSKLSNTQMMSPKDTAVWW 435 (477)
Q Consensus 413 ~a~~~~~~~~~~~~~~~~~a~~~ 435 (477)
++.+.++....+ ++....+..+
T Consensus 342 ~~~~~~~~~~~~-~sw~~~~~~~ 363 (365)
T cd03809 342 ELRERGLARAKR-FSWEKTARRT 363 (365)
T ss_pred HHHHHHHHHHHh-CCHHHHHHHH
Confidence 887777654443 5655554443
No 74
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.03 E-value=2e-07 Score=92.76 Aligned_cols=157 Identities=10% Similarity=0.014 Sum_probs=104.2
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC--------------CCCCCCeEEeecC--Chh-
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL--------------PDLPSNVICRKWL--PQH- 332 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~--------------~~~~~nv~i~~~v--p~~- 332 (477)
.+..+++..|.....++ ...+++++....++.+++++++..++... .+..+++.+.++. ++.
T Consensus 188 ~~~~~i~~vgrl~~~Kg-~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 266 (372)
T cd03792 188 PERPYITQVSRFDPWKD-PFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLE 266 (372)
T ss_pred CCCcEEEEEeccccccC-cHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHH
Confidence 35567788899877553 24445544444444456888887776321 1345678888876 443
Q ss_pred --hhhcCCCceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhc
Q psy15582 333 --DILAHPKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILY 406 (477)
Q Consensus 333 --~lL~h~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~ 406 (477)
.++ ..+|+++.. |-..++.||+++|+|+|+....+ ....+++.+.|..++ +.+.+.++|.++++
T Consensus 267 ~~~~~--~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~~~g~~~~----~~~~~a~~i~~ll~ 336 (372)
T cd03792 267 VNALQ--RASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDGETGFLVD----TVEEAAVRILYLLR 336 (372)
T ss_pred HHHHH--HhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccCCceEEeC----CcHHHHHHHHHHHc
Confidence 355 569999853 33468999999999999876533 234455666787765 56788889999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy15582 407 NETVYRKSQVYSKLSNTQMMSPKDTAVWWIE 437 (477)
Q Consensus 407 ~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie 437 (477)
|++.++.+.+.++....+.++....+.++++
T Consensus 337 ~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 367 (372)
T cd03792 337 DPELRRKMGANAREHVRENFLITRHLKDYLY 367 (372)
T ss_pred CHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9888888777666643323565555555544
No 75
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.02 E-value=2.2e-07 Score=91.79 Aligned_cols=128 Identities=12% Similarity=0.030 Sum_probs=84.8
Q ss_pred CCceEEEEecCCCCC--CCCCCeEEeecCC-hh---hhhcCCCceEEEEc----CChhHHHHHHHhCCcEEeccCCcchH
Q psy15582 303 PRHRIIWKWEEDILP--DLPSNVICRKWLP-QH---DILAHPKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQD 372 (477)
Q Consensus 303 ~~~~~l~~~~~~~~~--~~~~nv~i~~~vp-~~---~lL~h~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~ 372 (477)
++..+++...++... ....++.+.++++ +. .++ ..+++++.. |..+++.||+++|+|+|+....+
T Consensus 224 ~~~~~~i~G~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~--- 298 (365)
T cd03825 224 DDIELVVFGASDPEIPPDLPFPVHYLGSLNDDESLALIY--SAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGG--- 298 (365)
T ss_pred CCeEEEEeCCCchhhhccCCCceEecCCcCCHHHHHHHH--HhCCEEEeccccccccHHHHHHHhcCCCEEEecCCC---
Confidence 446666666554322 3567899999998 43 356 458999874 44689999999999999876533
Q ss_pred HHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy15582 373 TNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYV 439 (477)
Q Consensus 373 ~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~ 439 (477)
....+.+.+.|..++.. +.+++.+++.++++|++.++++.+.++....+.++ .+..++-.+.+
T Consensus 299 -~~e~~~~~~~g~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~ 361 (365)
T cd03825 299 -IPDIVDHGVTGYLAKPG--DPEDLAEGIEWLLADPDEREELGEAARELAENEFD-SRVQAKRYLSL 361 (365)
T ss_pred -ChhheeCCCceEEeCCC--CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence 22344445678777644 78999999999999987666665555544332233 33444444443
No 76
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.02 E-value=8.3e-08 Score=92.30 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=94.6
Q ss_pred hhhhcCCCceEEEecCCcccCC-cccHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCC--CeEEe-ecCChhhhhcCCC
Q psy15582 264 DWIEGAKDGVIYFSLGTNMQSA-SLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPS--NVICR-KWLPQHDILAHPK 339 (477)
Q Consensus 264 ~~l~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~--nv~i~-~~vp~~~lL~h~~ 339 (477)
+-++...++.|++=+.+..... .-....+..+++.+++.+ ..+|..-+......+-+ ++.+. +-++...++.+
T Consensus 172 ~~lg~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~-~~vV~ipr~~~~~~~~~~~~~~i~~~~vd~~~Ll~~-- 248 (335)
T PF04007_consen 172 KELGLDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYG-RNVVIIPRYEDQRELFEKYGVIIPPEPVDGLDLLYY-- 248 (335)
T ss_pred HHcCCCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhC-ceEEEecCCcchhhHHhccCccccCCCCCHHHHHHh--
Confidence 3344325677777776633221 123456778888888887 43444333222221111 24433 44555578855
Q ss_pred ceEEEEcCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q psy15582 340 VKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSK 419 (477)
Q Consensus 340 ~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~ 419 (477)
++++|+-|| +...||...|+|.|.+ ..++-...-+.+.+.|.-.... +++++.+.+.+.+ ..+++.+.
T Consensus 249 a~l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~Gll~~~~----~~~ei~~~v~~~~---~~~~~~~~--- 316 (335)
T PF04007_consen 249 ADLVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEKGLLYHST----DPDEIVEYVRKNL---GKRKKIRE--- 316 (335)
T ss_pred cCEEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHCCCeEecC----CHHHHHHHHHHhh---hcccchhh---
Confidence 999999887 7889999999999954 2234334556678888733333 6777776555443 33333322
Q ss_pred HhhcCCCChHHHHHHHHHHHH
Q psy15582 420 LSNTQMMSPKDTAVWWIEYVL 440 (477)
Q Consensus 420 ~~~~~~~~~~~~a~~~ie~~~ 440 (477)
... .++.+..++.||.++
T Consensus 317 -~~~--~d~~~~i~~~i~~~~ 334 (335)
T PF04007_consen 317 -KKS--EDPTDLIIEEIEEYI 334 (335)
T ss_pred -hhc--cCHHHHHHHHHHHhh
Confidence 122 488888888888764
No 77
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.98 E-value=1.6e-08 Score=100.20 Aligned_cols=156 Identities=10% Similarity=0.084 Sum_probs=97.9
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCC-CceEEEEecCCCCC---------CCCCCeEEeecCCh--hh---hh
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFP-RHRIIWKWEEDILP---------DLPSNVICRKWLPQ--HD---IL 335 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~-~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~--~~---lL 335 (477)
++.+++..|..... +......+++++.+.. ++++++...++..+ +++++|++.+++++ .. .+
T Consensus 179 ~~~~i~~~Grl~~~---~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~ 255 (359)
T PRK09922 179 KPAVFLYVGRLKFE---GQKNVKELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKI 255 (359)
T ss_pred CCcEEEEEEEEecc---cCcCHHHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHH
Confidence 45667788876431 1222344555555442 47888877664311 45789999999864 22 34
Q ss_pred cCCCceEEEEc----CChhHHHHHHHhCCcEEecc-CCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHH
Q psy15582 336 AHPKVKLFIMQ----GGLQSSQEAIHFGVPMIGIP-FFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETV 410 (477)
Q Consensus 336 ~h~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P-~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~ 410 (477)
..++++|.. |-..++.||+++|+|+|+.. ..+ ....+++...|..++.. +.+++.++|.++++|++.
T Consensus 256 --~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~~~G~lv~~~--d~~~la~~i~~l~~~~~~ 327 (359)
T PRK09922 256 --KNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPGLNGELYTPG--NIDEFVGKLNKVISGEVK 327 (359)
T ss_pred --hcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCCCceEEECCC--CHHHHHHHHHHHHhCccc
Confidence 347888753 44589999999999999875 433 22455556678888755 899999999999999873
Q ss_pred --HHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy15582 411 --YRKSQVYSKLSNTQMMSPKDTAVWWIEYV 439 (477)
Q Consensus 411 --~~~a~~~~~~~~~~~~~~~~~a~~~ie~~ 439 (477)
.+..++..+.+... .-..+..+.++.+
T Consensus 328 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 356 (359)
T PRK09922 328 YQHDAIPNSIERFYEV--LYFKNLNNALFSK 356 (359)
T ss_pred CCHHHHHHHHHHhhHH--HHHHHHHHHHHHH
Confidence 44444444444331 2234444444443
No 78
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.98 E-value=2.3e-07 Score=93.17 Aligned_cols=156 Identities=10% Similarity=0.039 Sum_probs=99.9
Q ss_pred ceEEEecCCcccCCcccHHHHH----HHHHHH-hhCCCceEEEEecCCCCC----CCCCCeEEeecCChh-hhhcCCCce
Q psy15582 272 GVIYFSLGTNMQSASLQEDKRK----AIVDSF-KQFPRHRIIWKWEEDILP----DLPSNVICRKWLPQH-DILAHPKVK 341 (477)
Q Consensus 272 ~~V~vs~Gs~~~~~~~~~~~~~----~i~~al-~~~~~~~~l~~~~~~~~~----~~~~nv~i~~~vp~~-~lL~h~~~~ 341 (477)
..+++..|++....+ .+.+. .+...+ ++.++.++++..++.... ...++|++.+++++. .++ ..++
T Consensus 224 ~~~ilf~G~l~~~k~--~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~~~~~~l~~~~~V~~~G~v~~~~~~~--~~ad 299 (397)
T TIGR03087 224 KRVLVFTGAMDYWPN--IDAVVWFAERVFPAVRARRPAAEFYIVGAKPSPAVRALAALPGVTVTGSVADVRPYL--AHAA 299 (397)
T ss_pred CcEEEEEEecCCccC--HHHHHHHHHHHHHHHHHHCCCcEEEEECCCChHHHHHhccCCCeEEeeecCCHHHHH--HhCC
Confidence 356677898876442 23222 222223 344668888777654211 235789999999975 356 4588
Q ss_pred EEEE--c--CCh-hHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHH
Q psy15582 342 LFIM--Q--GGL-QSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQV 416 (477)
Q Consensus 342 ~~I~--h--gG~-~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~ 416 (477)
++|. + .|. +.+.|||++|+|+|+.+...+. ..+..|.|..+. + +++++.++|.++++|++.++++.+
T Consensus 300 v~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~~~~~~g~lv~-~--~~~~la~ai~~ll~~~~~~~~~~~ 371 (397)
T TIGR03087 300 VAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----IDALPGAELLVA-A--DPADFAAAILALLANPAEREELGQ 371 (397)
T ss_pred EEEecccccCCcccHHHHHHHcCCCEEecCccccc-----ccccCCcceEeC-C--CHHHHHHHHHHHHcCHHHHHHHHH
Confidence 8873 2 343 4699999999999998753321 112346777765 3 799999999999999887777766
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHH
Q psy15582 417 YSKLSNTQMMSPKDTAVWWIEYVL 440 (477)
Q Consensus 417 ~~~~~~~~~~~~~~~a~~~ie~~~ 440 (477)
.++....+.++ -+..++-++.++
T Consensus 372 ~ar~~v~~~fs-w~~~~~~~~~~l 394 (397)
T TIGR03087 372 AARRRVLQHYH-WPRNLARLDALL 394 (397)
T ss_pred HHHHHHHHhCC-HHHHHHHHHHHh
Confidence 66654322244 344455555554
No 79
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.97 E-value=2.3e-07 Score=91.35 Aligned_cols=143 Identities=12% Similarity=0.054 Sum_probs=94.2
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhC-CCceEEEEecCCCCC-------------CCCCCeEEeecCChh-hh
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQF-PRHRIIWKWEEDILP-------------DLPSNVICRKWLPQH-DI 334 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~-~~~~~l~~~~~~~~~-------------~~~~nv~i~~~vp~~-~l 334 (477)
.+..+++..|+....+ ..+.+-..++.+.+. +++++++...+...+ ...++|++.++.+.. .+
T Consensus 183 ~~~~~i~~~Gr~~~~K--g~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 260 (355)
T cd03819 183 KGKPVILLPGRLTRWK--GQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAA 260 (355)
T ss_pred CCceEEEEeecccccc--CHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHH
Confidence 4566778888876543 233333344444442 347888877664321 345789999996554 46
Q ss_pred hcCCCceEEEEcC-----ChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHh-cCH
Q psy15582 335 LAHPKVKLFIMQG-----GLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSIL-YNE 408 (477)
Q Consensus 335 L~h~~~~~~I~hg-----G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll-~~~ 408 (477)
+ ..++++|.-. ..+++.||+++|+|+|+.... .....+.+.+.|..++.+ +.+++.++|..++ .++
T Consensus 261 l--~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~ 332 (355)
T cd03819 261 Y--ALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRPGETGLLVPPG--DAEALAQALDQILSLLP 332 (355)
T ss_pred H--HhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhCCCceEEeCCC--CHHHHHHHHHHHHhhCH
Confidence 6 4588887533 347999999999999987543 345566666688888755 8999999997555 466
Q ss_pred HHHHHHHHHHHHhh
Q psy15582 409 TVYRKSQVYSKLSN 422 (477)
Q Consensus 409 ~~~~~a~~~~~~~~ 422 (477)
+.++++.+.++...
T Consensus 333 ~~~~~~~~~a~~~~ 346 (355)
T cd03819 333 EGRAKMFAKARMCV 346 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655555443
No 80
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.89 E-value=1.3e-06 Score=86.11 Aligned_cols=145 Identities=13% Similarity=0.164 Sum_probs=89.5
Q ss_pred eEEEecCCcccCCcccHHHHHHHHHHHhhCC-CceEEEEecCCCC----------CCCCCCeEEeecCChhh---hhcCC
Q psy15582 273 VIYFSLGTNMQSASLQEDKRKAIVDSFKQFP-RHRIIWKWEEDIL----------PDLPSNVICRKWLPQHD---ILAHP 338 (477)
Q Consensus 273 ~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~-~~~~l~~~~~~~~----------~~~~~nv~i~~~vp~~~---lL~h~ 338 (477)
..++..|+....+ -...+++++.+.. ++++++..+++.. ....++|++.+++++.+ ++ .
T Consensus 194 ~~i~~~G~~~~~K-----g~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~--~ 266 (363)
T cd04955 194 RYYLLVGRIVPEN-----NIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELL--R 266 (363)
T ss_pred cEEEEEecccccC-----CHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHH--H
Confidence 3456788876633 2334555555543 4777777765221 13467999999999865 44 3
Q ss_pred CceEEEEcCCh-----hHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHH
Q psy15582 339 KVKLFIMQGGL-----QSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRK 413 (477)
Q Consensus 339 ~~~~~I~hgG~-----~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~ 413 (477)
++++++.+.-. +++.||+++|+|+|+....+. ...++. .|..++.. + .+.+++.++++|++.+++
T Consensus 267 ~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~--~g~~~~~~--~--~l~~~i~~l~~~~~~~~~ 336 (363)
T cd04955 267 YAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGD--KAIYFKVG--D--DLASLLEELEADPEEVSA 336 (363)
T ss_pred hCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecC--CeeEecCc--h--HHHHHHHHHHhCHHHHHH
Confidence 46777654322 679999999999998865431 222222 34444422 2 299999999999877776
Q ss_pred HHHHHHHhhcCCCChHHHHHH
Q psy15582 414 SQVYSKLSNTQMMSPKDTAVW 434 (477)
Q Consensus 414 a~~~~~~~~~~~~~~~~~a~~ 434 (477)
+.+.++....+.++....+.+
T Consensus 337 ~~~~~~~~~~~~fs~~~~~~~ 357 (363)
T cd04955 337 MAKAARERIREKYTWEKIADQ 357 (363)
T ss_pred HHHHHHHHHHHhCCHHHHHHH
Confidence 666555543322454444333
No 81
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.87 E-value=6.9e-07 Score=90.90 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=77.0
Q ss_pred CCCCeEEeecCChhhh---hcCC--CceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccC
Q psy15582 319 LPSNVICRKWLPQHDI---LAHP--KVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEY 389 (477)
Q Consensus 319 ~~~nv~i~~~vp~~~l---L~h~--~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~ 389 (477)
+.++|++.+++++.++ +... ++|+|+.. |-..++.||+++|+|+|+....+ ....+++...|..++.
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~~~~G~lv~~ 390 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIANCRNGLLVDV 390 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcCCCcEEEeCC
Confidence 4578889998887653 4221 23788753 43579999999999999886533 4455555567888876
Q ss_pred CCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy15582 390 ENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEY 438 (477)
Q Consensus 390 ~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~ 438 (477)
. +++++.++|.++++|++.++++.+.++....+.++. +..++-.+.
T Consensus 391 ~--d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw-~~~~~~~~~ 436 (439)
T TIGR02472 391 L--DLEAIASALEDALSDSSQWQLWSRNGIEGVRRHYSW-DAHVEKYLR 436 (439)
T ss_pred C--CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHH
Confidence 5 799999999999999887777666655433222443 333443443
No 82
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.86 E-value=1.5e-06 Score=84.77 Aligned_cols=122 Identities=11% Similarity=0.003 Sum_probs=83.5
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC-------C---CCCCeEEeecCChhh---hhcC
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP-------D---LPSNVICRKWLPQHD---ILAH 337 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~-------~---~~~nv~i~~~vp~~~---lL~h 337 (477)
+..+++..|..... +....+++++++.+ .++++...+.... . +.+++.+.+++++.+ ++
T Consensus 170 ~~~~i~~~Gr~~~~-----Kg~~~li~~~~~~~-~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~-- 241 (335)
T cd03802 170 KGDYLLFLGRISPE-----KGPHLAIRAARRAG-IPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELL-- 241 (335)
T ss_pred CCCEEEEEEeeccc-----cCHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHH--
Confidence 44456667887553 23345667777766 8888877764311 1 368999999999864 46
Q ss_pred CCceEEEEc-----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 338 PKVKLFIMQ-----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 338 ~~~~~~I~h-----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
..+++++.- |...++.||+++|+|+|+....+ ....+++...|..++ ..+++.+++.++++.+
T Consensus 242 ~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i~~~~~g~l~~----~~~~l~~~l~~l~~~~ 309 (335)
T cd03802 242 GNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVVEDGVTGFLVD----SVEELAAAVARADRLD 309 (335)
T ss_pred HhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhheeCCCcEEEeC----CHHHHHHHHHHHhccH
Confidence 457777632 33468999999999999886533 334444444788876 2899999999997543
No 83
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.85 E-value=1.8e-07 Score=92.63 Aligned_cols=134 Identities=13% Similarity=0.215 Sum_probs=91.1
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCC--CceEEEEecCCC---C----CCC---CCCeEEeecCChh---hh
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFP--RHRIIWKWEEDI---L----PDL---PSNVICRKWLPQH---DI 334 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~--~~~~l~~~~~~~---~----~~~---~~nv~i~~~vp~~---~l 334 (477)
.++.|++..|...... +.+.+..+++++++.. +..+++...+.. + ... .+|+++.++.++. .+
T Consensus 197 ~~~~vlv~~~r~~~~~--~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l 274 (363)
T cd03786 197 PKKYILVTLHRVENVD--DGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLL 274 (363)
T ss_pred CCCEEEEEeCCccccC--ChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHH
Confidence 4667777777765421 3556677777776654 245555443321 1 111 4688888766544 34
Q ss_pred hcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHH
Q psy15582 335 LAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKS 414 (477)
Q Consensus 335 L~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a 414 (477)
+ ..++++|+..| |.+.||+++|+|+|+++.. |. +..+.+.|+++.+.. +++++.+++.++++++..++++
T Consensus 275 ~--~~ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~g~~~~~~~---~~~~i~~~i~~ll~~~~~~~~~ 344 (363)
T cd03786 275 L--KNADLVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVESGTNVLVGT---DPEAILAAIEKLLSDEFAYSLM 344 (363)
T ss_pred H--HcCcEEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhheeeEEecCC---CHHHHHHHHHHHhcCchhhhcC
Confidence 5 56999999998 7788999999999998643 22 445667788877652 5899999999999987766665
Q ss_pred H
Q psy15582 415 Q 415 (477)
Q Consensus 415 ~ 415 (477)
+
T Consensus 345 ~ 345 (363)
T cd03786 345 S 345 (363)
T ss_pred C
Confidence 4
No 84
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.80 E-value=6.9e-06 Score=82.11 Aligned_cols=156 Identities=13% Similarity=0.154 Sum_probs=98.7
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCC-CceEEEEecCCCCC-----------CC---CCCeEE-eecCChhh
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFP-RHRIIWKWEEDILP-----------DL---PSNVIC-RKWLPQHD 333 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~-~~~~l~~~~~~~~~-----------~~---~~nv~i-~~~vp~~~ 333 (477)
.+.++++..|..... +-...+++++++.. +.++++..++.... .+ .+++.+ .+++++.+
T Consensus 199 ~~~~~i~~~Grl~~~-----Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (388)
T TIGR02149 199 RSRPYILFVGRITRQ-----KGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEE 273 (388)
T ss_pred CCceEEEEEcccccc-----cCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHH
Confidence 345577778887653 33444555555542 47777665543211 11 234554 46787643
Q ss_pred ---hhcCCCceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCC----HHHHHHHHH
Q psy15582 334 ---ILAHPKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENIT----AETLVTLMK 402 (477)
Q Consensus 334 ---lL~h~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~----~~~l~~al~ 402 (477)
++ ..+|+++.- |...++.||+++|+|+|+.... .....+++.+.|..++.++.+ .+.+.++|.
T Consensus 274 ~~~~~--~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~ 347 (388)
T TIGR02149 274 LVELL--SNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDGETGFLVPPDNSDADGFQAELAKAIN 347 (388)
T ss_pred HHHHH--HhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCCCceEEcCCCCCcccchHHHHHHHHH
Confidence 56 459998853 3346789999999999987653 355666666789998765321 189999999
Q ss_pred HHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q psy15582 403 SILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWI 436 (477)
Q Consensus 403 ~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~i 436 (477)
++++|++.++++.+.+++...+.++....+..++
T Consensus 348 ~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 381 (388)
T TIGR02149 348 ILLADPELAKKMGIAGRKRAEEEFSWGSIAKKTV 381 (388)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999988777776665554322355544444433
No 85
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.80 E-value=8.9e-07 Score=88.95 Aligned_cols=124 Identities=12% Similarity=0.073 Sum_probs=81.3
Q ss_pred eEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC-------CCC-CCeEEeecCChhhhhcCCCceEEE
Q psy15582 273 VIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP-------DLP-SNVICRKWLPQHDILAHPKVKLFI 344 (477)
Q Consensus 273 ~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~-------~~~-~nv~i~~~vp~~~lL~h~~~~~~I 344 (477)
.+++..|.....+++ ..+++++.+.....+++++++..+|+..+ +++ +...+.++.+..+++ ..+|+||
T Consensus 229 ~~~l~vGRL~~eK~~-~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~--~~~DvFv 305 (462)
T PLN02846 229 KGAYYIGKMVWSKGY-KELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLF--HDYKVFL 305 (462)
T ss_pred eEEEEEecCcccCCH-HHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHH--HhCCEEE
Confidence 356678888875532 34444444333344567888877775532 122 122356666666788 4589998
Q ss_pred Ec----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 345 MQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 345 ~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
.- +=.+++.||+++|+|+|+....+ + ..+.+-+.|...+ +.+++.+++.++|+++
T Consensus 306 ~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~~ng~~~~----~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 306 NPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQFPNCRTYD----DGKGFVRATLKALAEE 364 (462)
T ss_pred ECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecCCceEecC----CHHHHHHHHHHHHccC
Confidence 65 44588999999999999886543 2 4444455665553 7889999999999754
No 86
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.75 E-value=7.9e-06 Score=86.45 Aligned_cols=141 Identities=13% Similarity=0.068 Sum_probs=97.9
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC---------CCCCCeEEeecCChhh-hhcCCCc
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP---------DLPSNVICRKWLPQHD-ILAHPKV 340 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~~~-lL~h~~~ 340 (477)
+..++...|.....++ ...+++++.+..++.+++++++..++...+ ++.++|++.+|.++.. ++ ..+
T Consensus 516 ~~~vIg~VGRL~~~KG-~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll--~aa 592 (694)
T PRK15179 516 ARFTVGTVMRVDDNKR-PFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWL--TQF 592 (694)
T ss_pred CCeEEEEEEeCCccCC-HHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHH--Hhc
Confidence 3456777888766442 355666666666667778888888764321 4568999999988754 56 558
Q ss_pred eEEEE---cCC-hhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhc----CHHHHH
Q psy15582 341 KLFIM---QGG-LQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILY----NETVYR 412 (477)
Q Consensus 341 ~~~I~---hgG-~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~----~~~~~~ 412 (477)
++++. +.| .+++.||+++|+|+|+....+ ....+++...|+.++.++.+++++.+++.+++. ++.+++
T Consensus 593 Dv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~ 668 (694)
T PRK15179 593 NAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIAR 668 (694)
T ss_pred CEEEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHH
Confidence 88875 344 488999999999999886533 445566656799998777676777777766654 566666
Q ss_pred HHHHHH
Q psy15582 413 KSQVYS 418 (477)
Q Consensus 413 ~a~~~~ 418 (477)
++++..
T Consensus 669 ~ar~~a 674 (694)
T PRK15179 669 KAADWA 674 (694)
T ss_pred HHHHHH
Confidence 655443
No 87
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.75 E-value=6.8e-06 Score=89.10 Aligned_cols=167 Identities=13% Similarity=0.137 Sum_probs=106.3
Q ss_pred hhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhC------CCceEEEEecCCCC------------------
Q psy15582 261 NLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQF------PRHRIIWKWEEDIL------------------ 316 (477)
Q Consensus 261 ~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~------~~~~~l~~~~~~~~------------------ 316 (477)
++..|+.. .+.+++++.|.....++ ...+++|+..+ ++..+|. .+++..
T Consensus 469 ~l~r~~~~-pdkpvIL~VGRL~p~KG-----i~~LIeAf~~L~~l~~~~nL~LIi-G~gdd~d~l~~~~~~~l~~L~~li 541 (1050)
T TIGR02468 469 EIMRFFTN-PRKPMILALARPDPKKN-----ITTLVKAFGECRPLRELANLTLIM-GNRDDIDEMSSGSSSVLTSVLKLI 541 (1050)
T ss_pred HHHhhccc-CCCcEEEEEcCCccccC-----HHHHHHHHHHhHhhccCCCEEEEE-ecCchhhhhhccchHHHHHHHHHH
Confidence 45566655 45557778899876442 33344444332 1233332 222211
Q ss_pred --CCCCCCeEEeecCChhh---hhcC--CCceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceE
Q psy15582 317 --PDLPSNVICRKWLPQHD---ILAH--PKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVAR 385 (477)
Q Consensus 317 --~~~~~nv~i~~~vp~~~---lL~h--~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~ 385 (477)
-.+.++|.+.+++++.+ ++.. ...++||.- |=..++.||+++|+|+|+....+ ....++....|+
T Consensus 542 ~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g~nGl 617 (1050)
T TIGR02468 542 DKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVLDNGL 617 (1050)
T ss_pred HHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccCCcEE
Confidence 03457899999988765 4422 122588753 33478999999999999886544 233444445788
Q ss_pred EccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q psy15582 386 FLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVLK 441 (477)
Q Consensus 386 ~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~ 441 (477)
.+++. +++.|+++|.++++|+..++++.+.+.....+ ++....+...++.+..
T Consensus 618 LVdP~--D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~-FSWe~ia~~yl~~i~~ 670 (1050)
T TIGR02468 618 LVDPH--DQQAIADALLKLVADKQLWAECRQNGLKNIHL-FSWPEHCKTYLSRIAS 670 (1050)
T ss_pred EECCC--CHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Confidence 88765 79999999999999998887777766654433 6777766666655543
No 88
>KOG3349|consensus
Probab=98.74 E-value=5.8e-08 Score=79.07 Aligned_cols=117 Identities=12% Similarity=0.127 Sum_probs=85.5
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC--------CCCCCeE--EeecCChh-hhhcCCC
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP--------DLPSNVI--CRKWLPQH-DILAHPK 339 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~--------~~~~nv~--i~~~vp~~-~lL~h~~ 339 (477)
...+||+.||-...+.++--..++..+.+.+.+--+.++..|....- .....+. -..|-|.. +.. ..
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I--~~ 80 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDI--RS 80 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHH--hh
Confidence 56899999998874433344456677888888844677777654211 0123333 34677874 455 34
Q ss_pred ceEEEEcCChhHHHHHHHhCCcEEecc----CCcchHHHHHHHHHcCceEEccC
Q psy15582 340 VKLFIMQGGLQSSQEAIHFGVPMIGIP----FFADQDTNVRKLESMDVARFLEY 389 (477)
Q Consensus 340 ~~~~I~hgG~~s~~Eal~~GvP~i~~P----~~~dQ~~na~~~~~~G~g~~l~~ 389 (477)
++++|+|+|+||++|.+..|+|.|+++ +-.+|-.-|..+++.|-=..-.+
T Consensus 81 AdlVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~p 134 (170)
T KOG3349|consen 81 ADLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTP 134 (170)
T ss_pred ccEEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeec
Confidence 999999999999999999999999988 45699999999999997766654
No 89
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.72 E-value=1.4e-05 Score=84.82 Aligned_cols=159 Identities=9% Similarity=-0.002 Sum_probs=98.6
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhC----CCceEEEEecCCC------C---------------CCCCCCeEE
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQF----PRHRIIWKWEEDI------L---------------PDLPSNVIC 325 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~----~~~~~l~~~~~~~------~---------------~~~~~nv~i 325 (477)
+..++++.|.....++ ...+++++.+. ++.++++..++.. . -++.++|.+
T Consensus 549 ~kpiIl~VGRL~~~KG-----id~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~f 623 (784)
T TIGR02470 549 NKPIIFSMARLDRVKN-----LTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRW 623 (784)
T ss_pred CCcEEEEEeCCCccCC-----HHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEE
Confidence 4456778898876442 33344444332 2366666665421 0 034578998
Q ss_pred eecC-Ch---hhhhcC--CCceEEEE----cCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHH
Q psy15582 326 RKWL-PQ---HDILAH--PKVKLFIM----QGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAE 395 (477)
Q Consensus 326 ~~~v-p~---~~lL~h--~~~~~~I~----hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~ 395 (477)
.++. +. ..++.+ .++++||. -|-..++.||+++|+|+|+.... ..+..+++-.-|..+++. +++
T Consensus 624 lG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~dg~tGfLVdp~--D~e 697 (784)
T TIGR02470 624 IGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQDGVSGFHIDPY--HGE 697 (784)
T ss_pred ccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCCCcEEEeCCC--CHH
Confidence 8875 32 234421 23467773 34457899999999999987654 355566666779999866 789
Q ss_pred HHHHHHHHHh----cCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q psy15582 396 TLVTLMKSIL----YNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVLK 441 (477)
Q Consensus 396 ~l~~al~~ll----~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~ 441 (477)
++.++|.+++ +|++.++++.+.+.....+.++....+..+ ..+.+
T Consensus 698 aLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~l-l~l~~ 746 (784)
T TIGR02470 698 EAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERL-LTLAG 746 (784)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHh
Confidence 9999999876 688888777766554322225655554443 34443
No 90
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.66 E-value=1.8e-05 Score=76.59 Aligned_cols=206 Identities=15% Similarity=0.118 Sum_probs=131.5
Q ss_pred ccccEEEEecCccccCCcCCC-CceEEeCccccCCC--CCCChhhHhhhhcCC-CceEEEecCCcccCCcccHHHHHHHH
Q psy15582 221 ENKTLLFISTSWLLTYPRPVF-PNTILLGPIHLNNP--KPLPQNLKDWIEGAK-DGVIYFSLGTNMQSASLQEDKRKAIV 296 (477)
Q Consensus 221 ~~~~~~l~~s~~~l~~~~~~~-~~~~~vG~~~~~~~--~~~~~~l~~~l~~~~-~~~V~vs~Gs~~~~~~~~~~~~~~i~ 296 (477)
++.++++.++...-+-...+. +.+..+|-+-.+.. ..++.+...|-..-+ ...+.|..+|... .++.+-...
T Consensus 176 ~~i~li~aQse~D~~Rf~~LGa~~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~r~v~iaaSTH~G----Eeei~l~~~ 251 (419)
T COG1519 176 KNIDLILAQSEEDAQRFRSLGAKPVVVTGNLKFDIEPPPQLAAELAALRRQLGGHRPVWVAASTHEG----EEEIILDAH 251 (419)
T ss_pred HhcceeeecCHHHHHHHHhcCCcceEEecceeecCCCChhhHHHHHHHHHhcCCCCceEEEecCCCc----hHHHHHHHH
Confidence 455666777665544333321 23777887766652 223333333333322 2677777788554 355555555
Q ss_pred HHHh-hCCCceEEEEecCCC-----------------------CCCCCCCeEEeecCChhhhhcCCCceEE------EEc
Q psy15582 297 DSFK-QFPRHRIIWKWEEDI-----------------------LPDLPSNVICRKWLPQHDILAHPKVKLF------IMQ 346 (477)
Q Consensus 297 ~al~-~~~~~~~l~~~~~~~-----------------------~~~~~~nv~i~~~vp~~~lL~h~~~~~~------I~h 346 (477)
+++. +.++...||+=...+ ......+|.+.+-+=.+-++- .-+++. +.+
T Consensus 252 ~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y-~~adiAFVGGSlv~~ 330 (419)
T COG1519 252 QALKKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLY-GIADIAFVGGSLVPI 330 (419)
T ss_pred HHHHhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHH-hhccEEEECCcccCC
Confidence 5554 445677777765422 111234677777654443221 334443 458
Q ss_pred CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCC
Q psy15582 347 GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMM 426 (477)
Q Consensus 347 gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~~~ 426 (477)
||.| ..|+++.|+|+|.=|....|..-++++++.|+|+.++ +.+.+.+++..+++|++.++++.+....+-.+..
T Consensus 331 GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~----~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 331 GGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVE----DADLLAKAVELLLADEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred CCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEEC----CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 8888 8899999999999999999999999999999999998 5788999999999888888888666666544322
Q ss_pred ChHHHHHHHH
Q psy15582 427 SPKDTAVWWI 436 (477)
Q Consensus 427 ~~~~~a~~~i 436 (477)
...++..+.+
T Consensus 406 gal~r~l~~l 415 (419)
T COG1519 406 GALARTLEAL 415 (419)
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 91
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.64 E-value=1.2e-06 Score=88.21 Aligned_cols=156 Identities=12% Similarity=0.038 Sum_probs=103.8
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC---------CCCCCeEEeecCChhh---hhcCC
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP---------DLPSNVICRKWLPQHD---ILAHP 338 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~~~---lL~h~ 338 (477)
++..+++.|.....++ -..+++++....++.+++++++..+++..+ ++.++|.+.+|+|+.+ ++ .
T Consensus 221 ~~~~il~vGrl~~~Kg-~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l--~ 297 (406)
T PRK15427 221 TPLEIISVARLTEKKG-LHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAML--D 297 (406)
T ss_pred CCeEEEEEeCcchhcC-HHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHH--H
Confidence 5566778888876442 133344333222233457788777664311 3568899999999865 56 5
Q ss_pred CceEEEEc----------CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhc-C
Q psy15582 339 KVKLFIMQ----------GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILY-N 407 (477)
Q Consensus 339 ~~~~~I~h----------gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~-~ 407 (477)
.+|++|.- |-.+++.||+++|+|+|+....+ ....+++...|..++.+ +++++.++|.++++ |
T Consensus 298 ~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~~~G~lv~~~--d~~~la~ai~~l~~~d 371 (406)
T PRK15427 298 DADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEADKSGWLVPEN--DAQALAQRLAAFSQLD 371 (406)
T ss_pred hCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCCCceEEeCCC--CHHHHHHHHHHHHhCC
Confidence 58988852 23367999999999999886543 34455556688888765 79999999999999 8
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHH
Q psy15582 408 ETVYRKSQVYSKLSNTQMMSPKDTAVWW 435 (477)
Q Consensus 408 ~~~~~~a~~~~~~~~~~~~~~~~~a~~~ 435 (477)
++.++++.+.++....+.++....+.++
T Consensus 372 ~~~~~~~~~~ar~~v~~~f~~~~~~~~l 399 (406)
T PRK15427 372 TDELAPVVKRAREKVETDFNQQVINREL 399 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8877776666655433335544444333
No 92
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.60 E-value=3.7e-06 Score=83.90 Aligned_cols=159 Identities=11% Similarity=0.022 Sum_probs=101.5
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC----------------CCCCCCeEEeecCChhh-
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL----------------PDLPSNVICRKWLPQHD- 333 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~----------------~~~~~nv~i~~~vp~~~- 333 (477)
+..+++..|.....++ ...+++++....++.+++++++..++... ..++.++.+.+++|+.+
T Consensus 192 ~~~~il~~Grl~~~Kg-~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l 270 (380)
T PRK15484 192 DETVLLYAGRISPDKG-ILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKM 270 (380)
T ss_pred CCeEEEEeccCccccC-HHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHH
Confidence 5567777788776442 24455555544445566888887765321 13457899999998654
Q ss_pred --hhcCCCceEEEEc----CC-hhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEc-cCCCCCHHHHHHHHHHHh
Q psy15582 334 --ILAHPKVKLFIMQ----GG-LQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFL-EYENITAETLVTLMKSIL 405 (477)
Q Consensus 334 --lL~h~~~~~~I~h----gG-~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l-~~~~~~~~~l~~al~~ll 405 (477)
++ ..+|+++.. .| ..++.||+++|+|+|+....+ +...+++...|..+ +.. +++++.++|.+++
T Consensus 271 ~~~~--~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~~~~G~~l~~~~--d~~~la~~I~~ll 342 (380)
T PRK15484 271 HNYY--PLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLEGITGYHLAEPM--TSDSIISDINRTL 342 (380)
T ss_pred HHHH--HhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcccCCceEEEeCCC--CHHHHHHHHHHHH
Confidence 46 568888853 33 267899999999999886533 44556666678744 433 7999999999999
Q ss_pred cCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q psy15582 406 YNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVL 440 (477)
Q Consensus 406 ~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~ 440 (477)
+|++.++ +.+.++....+.++. +..++-.+.++
T Consensus 343 ~d~~~~~-~~~~ar~~~~~~fsw-~~~a~~~~~~l 375 (380)
T PRK15484 343 ADPELTQ-IAEQAKDFVFSKYSW-EGVTQRFEEQI 375 (380)
T ss_pred cCHHHHH-HHHHHHHHHHHhCCH-HHHHHHHHHHH
Confidence 9987543 444343332222444 34444444444
No 93
>PLN02275 transferase, transferring glycosyl groups
Probab=98.58 E-value=1.3e-05 Score=79.59 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=66.4
Q ss_pred CCceEEEEecCCCCC---------CCCCCeEEee-cCChhhh---hcCCCceEEEE-c------CChhHHHHHHHhCCcE
Q psy15582 303 PRHRIIWKWEEDILP---------DLPSNVICRK-WLPQHDI---LAHPKVKLFIM-Q------GGLQSSQEAIHFGVPM 362 (477)
Q Consensus 303 ~~~~~l~~~~~~~~~---------~~~~nv~i~~-~vp~~~l---L~h~~~~~~I~-h------gG~~s~~Eal~~GvP~ 362 (477)
+++++++..+|+..+ ++ +|+.+.. |+|+.++ + ..+|+++. + |-.+++.||+++|+|+
T Consensus 260 ~~i~l~ivG~G~~~~~l~~~~~~~~l-~~v~~~~~~~~~~~~~~~l--~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PV 336 (371)
T PLN02275 260 PRLLFIITGKGPQKAMYEEKISRLNL-RHVAFRTMWLEAEDYPLLL--GSADLGVSLHTSSSGLDLPMKVVDMFGCGLPV 336 (371)
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHcCC-CceEEEcCCCCHHHHHHHH--HhCCEEEEeccccccccccHHHHHHHHCCCCE
Confidence 568888888775422 22 4577655 7887654 6 66999884 1 1236799999999999
Q ss_pred EeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHh
Q psy15582 363 IGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSIL 405 (477)
Q Consensus 363 i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll 405 (477)
|..... .+...+++.+.|..++ +++++.++|.++|
T Consensus 337 Va~~~g----g~~eiv~~g~~G~lv~----~~~~la~~i~~l~ 371 (371)
T PLN02275 337 CAVSYS----CIGELVKDGKNGLLFS----SSSELADQLLELL 371 (371)
T ss_pred EEecCC----ChHHHccCCCCeEEEC----CHHHHHHHHHHhC
Confidence 987542 3666777777899886 5889999998875
No 94
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.52 E-value=1.3e-06 Score=76.54 Aligned_cols=142 Identities=15% Similarity=0.172 Sum_probs=100.3
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhh-CCCceEEEEecCCC---------CCCCCCCeEEeecCChh---hhhc
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQ-FPRHRIIWKWEEDI---------LPDLPSNVICRKWLPQH---DILA 336 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~-~~~~~~l~~~~~~~---------~~~~~~nv~i~~~vp~~---~lL~ 336 (477)
.++.+++..|+....++ ...+++.+.....+ .+++.+++...+.. .....+++++.+++++. .++.
T Consensus 13 ~~~~~il~~g~~~~~K~-~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 91 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKG-IDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYK 91 (172)
T ss_dssp TTSEEEEEESESSGGGT-HHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHH
T ss_pred CCCeEEEEEecCccccC-HHHHHHHHHHHHhhcCCCeEEEEEcccccccccccccccccccccccccccccccccccccc
Confidence 67788888899877442 24444444433332 34466666663321 11467899999999832 4664
Q ss_pred CCCceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHH
Q psy15582 337 HPKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYR 412 (477)
Q Consensus 337 h~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~ 412 (477)
.++++++. |..+++.||+++|+|+|+.. -..+...+.+.+.|..++.. +.+++.++|.+++++++.++
T Consensus 92 --~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~~~g~~~~~~--~~~~l~~~i~~~l~~~~~~~ 163 (172)
T PF00534_consen 92 --SSDIFVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDGVNGFLFDPN--DIEELADAIEKLLNDPELRQ 163 (172)
T ss_dssp --HTSEEEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTTTSEEEESTT--SHHHHHHHHHHHHHHHHHHH
T ss_pred --cceeccccccccccccccccccccccceeecc----ccCCceeeccccceEEeCCC--CHHHHHHHHHHHHCCHHHHH
Confidence 48999877 67789999999999999764 46667777777789999865 89999999999999998888
Q ss_pred HHHHHHHH
Q psy15582 413 KSQVYSKL 420 (477)
Q Consensus 413 ~a~~~~~~ 420 (477)
++.+.+++
T Consensus 164 ~l~~~~~~ 171 (172)
T PF00534_consen 164 KLGKNARE 171 (172)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 88776653
No 95
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.49 E-value=4.1e-05 Score=78.55 Aligned_cols=138 Identities=13% Similarity=0.098 Sum_probs=82.8
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC---------CCCCCCeEE-eecCChh--hhhcCC
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL---------PDLPSNVIC-RKWLPQH--DILAHP 338 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~---------~~~~~nv~i-~~~vp~~--~lL~h~ 338 (477)
+.++++..|.....+. ...+++++.+.. +.+ .++++..+++.. ...+.++.+ .++-... .++ .
T Consensus 281 ~~~~i~~vGRl~~~KG-~~~li~a~~~l~-~~~-~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~--~ 355 (466)
T PRK00654 281 DAPLFAMVSRLTEQKG-LDLVLEALPELL-EQG-GQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIY--A 355 (466)
T ss_pred CCcEEEEeeccccccC-hHHHHHHHHHHH-hcC-CEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHH--h
Confidence 4567788899876442 133333333332 224 888887765421 134566654 5663222 356 5
Q ss_pred CceEEEEc----CChhHHHHHHHhCCcEEeccCCc--chHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhc---CHH
Q psy15582 339 KVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFA--DQDTNVRKLESMDVARFLEYENITAETLVTLMKSILY---NET 409 (477)
Q Consensus 339 ~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~--dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~---~~~ 409 (477)
.+|+++.- |-..+..||+++|+|.|+....+ |.-.+...-++.+.|..++.. +++++.++|.++++ ++.
T Consensus 356 ~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~--d~~~la~~i~~~l~~~~~~~ 433 (466)
T PRK00654 356 GADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDF--NAEDLLRALRRALELYRQPP 433 (466)
T ss_pred hCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCC--CHHHHHHHHHHHHHHhcCHH
Confidence 69999853 33368999999999999875433 211111001233789888765 78999999999886 444
Q ss_pred HHHHHH
Q psy15582 410 VYRKSQ 415 (477)
Q Consensus 410 ~~~~a~ 415 (477)
.++++.
T Consensus 434 ~~~~~~ 439 (466)
T PRK00654 434 LWRALQ 439 (466)
T ss_pred HHHHHH
Confidence 444443
No 96
>PLN00142 sucrose synthase
Probab=98.48 E-value=0.0002 Score=76.30 Aligned_cols=164 Identities=9% Similarity=-0.088 Sum_probs=97.8
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecC-CC-----C---------------CCCCCCeEEeecC
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEE-DI-----L---------------PDLPSNVICRKWL 329 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~-~~-----~---------------~~~~~nv~i~~~v 329 (477)
+..++++.|.....+++ ..+++++.+..+..++.++++..++ +. . -++.++|.+.+..
T Consensus 572 ~kpvIl~VGRL~~~KGi-d~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~ 650 (815)
T PLN00142 572 KKPIIFSMARLDRVKNL-TGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQ 650 (815)
T ss_pred CCcEEEEEecCcccCCH-HHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCc
Confidence 45577888998774432 3344443332222234777776654 11 0 0245678776643
Q ss_pred ----ChhhhhcC--CCceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHH
Q psy15582 330 ----PQHDILAH--PKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVT 399 (477)
Q Consensus 330 ----p~~~lL~h--~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ 399 (477)
+..+++.. .++++|+.- |=..++.||+++|+|+|+....+ ....+++-..|..+++. +++++++
T Consensus 651 ~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~dG~tG~LV~P~--D~eaLA~ 724 (815)
T PLN00142 651 TNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIVDGVSGFHIDPY--HGDEAAN 724 (815)
T ss_pred CCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCCC--CHHHHHH
Confidence 33344320 135777753 33468999999999999876544 44555665679998866 7888888
Q ss_pred HHHHH----hcCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q psy15582 400 LMKSI----LYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVLKA 442 (477)
Q Consensus 400 al~~l----l~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~~ 442 (477)
+|.++ ++|++.++++.+.+.....+.++....+.. ++.+..-
T Consensus 725 aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~r-ll~L~~~ 770 (815)
T PLN00142 725 KIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAER-LLTLGGV 770 (815)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHhh
Confidence 87654 578888888777664433222555444444 4444443
No 97
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.47 E-value=9.2e-05 Score=74.83 Aligned_cols=130 Identities=12% Similarity=0.002 Sum_probs=85.0
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCC-----CceEEEEecCCCC---------------CCCCCCeEEeecC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFP-----RHRIIWKWEEDIL---------------PDLPSNVICRKWL 329 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~-----~~~~l~~~~~~~~---------------~~~~~nv~i~~~v 329 (477)
.+..++++.|.....++ ....++++.+..++.+ ++++++..++... .++.++|++.+++
T Consensus 235 ~~~~~il~vgr~~~~K~-~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v 313 (419)
T cd03806 235 TRENQILSIAQFRPEKN-HPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNA 313 (419)
T ss_pred cCCcEEEEEEeecCCCC-HHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 35567888898876543 2455665555554443 2677776654210 1346899999999
Q ss_pred Chhh---hhcCCCceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHH---HcCceEEccCCCCCHHHHHH
Q psy15582 330 PQHD---ILAHPKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLE---SMDVARFLEYENITAETLVT 399 (477)
Q Consensus 330 p~~~---lL~h~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~---~~G~g~~l~~~~~~~~~l~~ 399 (477)
|+.+ +| ..++++++. |=..++.|||++|+|+|+....+.- ...++ ..+.|...+ +++++.+
T Consensus 314 ~~~~l~~~l--~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g~~G~l~~----d~~~la~ 384 (419)
T cd03806 314 PFEELLEEL--STASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGGPTGFLAS----TAEEYAE 384 (419)
T ss_pred CHHHHHHHH--HhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCCCceEEeC----CHHHHHH
Confidence 8764 56 458887742 2235789999999999976543311 11222 345777753 8999999
Q ss_pred HHHHHhcCHH
Q psy15582 400 LMKSILYNET 409 (477)
Q Consensus 400 al~~ll~~~~ 409 (477)
++.++++++.
T Consensus 385 ai~~ll~~~~ 394 (419)
T cd03806 385 AIEKILSLSE 394 (419)
T ss_pred HHHHHHhCCH
Confidence 9999998643
No 98
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.42 E-value=9.6e-06 Score=81.67 Aligned_cols=152 Identities=17% Similarity=0.162 Sum_probs=99.7
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEE--ecCCCCC---------CCCCCeEEeecCChhh---hh
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWK--WEEDILP---------DLPSNVICRKWLPQHD---IL 335 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~--~~~~~~~---------~~~~nv~i~~~vp~~~---lL 335 (477)
+++..++++|.....+++ ..+++++.+..++.++.++.|. .+++... ...++|.+.+|+++.+ ++
T Consensus 228 ~~~~~il~~Grl~~~Kg~-~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~ 306 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRV-DLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLY 306 (407)
T ss_pred CCCEEEEEeeccccccCH-HHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHH
Confidence 456777888988875432 4445545444444444555553 3332211 2346799999999764 44
Q ss_pred cCCCceEEEEcC----ChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHH
Q psy15582 336 AHPKVKLFIMQG----GLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVY 411 (477)
Q Consensus 336 ~h~~~~~~I~hg----G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~ 411 (477)
....+++++... -.++++||+++|+|+|+....+ ....+.+.+.|..++. .-+++++.++|.++++|++.+
T Consensus 307 ~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~~~~G~l~~~-~~~~~~la~~I~~ll~~~~~~ 381 (407)
T cd04946 307 KENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDNGGNGLLLSK-DPTPNELVSSLSKFIDNEEEY 381 (407)
T ss_pred hhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcCCCcEEEeCC-CCCHHHHHHHHHHHHhCHHHH
Confidence 434577887433 3578999999999999876533 4556665558988764 237899999999999998887
Q ss_pred HHHHHHHHHhhcCCCC
Q psy15582 412 RKSQVYSKLSNTQMMS 427 (477)
Q Consensus 412 ~~a~~~~~~~~~~~~~ 427 (477)
+++.+.++..-.+.++
T Consensus 382 ~~m~~~ar~~~~~~f~ 397 (407)
T cd04946 382 QTMREKAREKWEENFN 397 (407)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 7776666655433344
No 99
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.41 E-value=6.5e-06 Score=81.70 Aligned_cols=152 Identities=13% Similarity=0.131 Sum_probs=97.9
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhC----CCceEEEEecCCC-C-------CCCCCCeEEeecCChh---hhh
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQF----PRHRIIWKWEEDI-L-------PDLPSNVICRKWLPQH---DIL 335 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~----~~~~~l~~~~~~~-~-------~~~~~nv~i~~~vp~~---~lL 335 (477)
++.|+++.+.... ..+.+..+++++.++ ++.++++...++. . ....+++++.+.+++. .++
T Consensus 197 ~~~vl~~~hr~~~----~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 272 (365)
T TIGR00236 197 KRYILLTLHRREN----VGEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLA 272 (365)
T ss_pred CCEEEEecCchhh----hhhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHH
Confidence 4556555443222 123345555555443 4577777654321 0 1234689999877764 355
Q ss_pred cCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHH
Q psy15582 336 AHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQ 415 (477)
Q Consensus 336 ~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~ 415 (477)
..++++|+..|.. +.||+++|+|+|.++..++++. +.+.|.+..+. . +++++.+++.++++|++.++++.
T Consensus 273 --~~ad~vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~lv~-~--d~~~i~~ai~~ll~~~~~~~~~~ 342 (365)
T TIGR00236 273 --ANSHLILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEAGTNKLVG-T--DKENITKAAKRLLTDPDEYKKMS 342 (365)
T ss_pred --HhCCEEEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhcCceEEeC-C--CHHHHHHHHHHHHhChHHHHHhh
Confidence 4599999977644 7999999999999876555442 33467776664 2 78999999999999988887776
Q ss_pred HHHHHhhcCCCChHHHHHHHHHH
Q psy15582 416 VYSKLSNTQMMSPKDTAVWWIEY 438 (477)
Q Consensus 416 ~~~~~~~~~~~~~~~~a~~~ie~ 438 (477)
+....+.+ .+..+++++.++.
T Consensus 343 ~~~~~~g~--~~a~~ri~~~l~~ 363 (365)
T TIGR00236 343 NASNPYGD--GEASERIVEELLN 363 (365)
T ss_pred hcCCCCcC--chHHHHHHHHHHh
Confidence 55443433 3566676666654
No 100
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.34 E-value=5e-05 Score=78.45 Aligned_cols=125 Identities=17% Similarity=0.088 Sum_probs=78.2
Q ss_pred EecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC-------CCCCCeEEeecCChhh-hhcCCCceEEEEc-
Q psy15582 276 FSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP-------DLPSNVICRKWLPQHD-ILAHPKVKLFIMQ- 346 (477)
Q Consensus 276 vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~-------~~~~nv~i~~~vp~~~-lL~h~~~~~~I~h- 346 (477)
+..|.....+++ ..+++++.....+.+++++++..+|+..+ .+.-++.+.++.++.. ++ ..+|+||.-
T Consensus 550 LfVGRLa~EKGl-d~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~ly--asaDVFVlPS 626 (794)
T PLN02501 550 YFLGKMVWAKGY-RELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSL--HGYKVFINPS 626 (794)
T ss_pred EEEEcccccCCH-HHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHH--HhCCEEEECC
Confidence 345777664421 33333333322344557888777765422 1223577788887654 77 568999853
Q ss_pred ---CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHH
Q psy15582 347 ---GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYR 412 (477)
Q Consensus 347 ---gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~ 412 (477)
|=.+++.||+++|+|+|+....+.+. +..-+.|... + +.+++.+++.++|+++..+.
T Consensus 627 ~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g~nGll~--~--D~EafAeAI~~LLsd~~~rl 686 (794)
T PLN02501 627 ISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSFPNCLTY--K--TSEDFVAKVKEALANEPQPL 686 (794)
T ss_pred CcccchHHHHHHHHcCCCEEEecCCCCce-----EeecCCeEec--C--CHHHHHHHHHHHHhCchhhh
Confidence 33478999999999999987665321 2222333333 2 78999999999998876443
No 101
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.33 E-value=7.8e-06 Score=81.24 Aligned_cols=144 Identities=16% Similarity=0.126 Sum_probs=99.2
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC---------CCCCCCeEEeecCChh-hhhcCCC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL---------PDLPSNVICRKWLPQH-DILAHPK 339 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~---------~~~~~nv~i~~~vp~~-~lL~h~~ 339 (477)
.++..++..|.....++ ...+++++.+...+.+++++++...+... ..++++|.+.++.++. .++. .
T Consensus 202 ~~~~~i~~vgrl~~~K~-~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~--~ 278 (372)
T cd04949 202 RKPHKIITVARLAPEKQ-LDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQ--K 278 (372)
T ss_pred cCCCeEEEEEccCcccC-HHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHh--h
Confidence 35556777888765432 24555555555555677888877665431 1456789999887765 4674 4
Q ss_pred ceEEEE--c--CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHH
Q psy15582 340 VKLFIM--Q--GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQ 415 (477)
Q Consensus 340 ~~~~I~--h--gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~ 415 (477)
++++|. + |...++.||+++|+|+|+..... .....+++...|..++.. +++++.++|.++++|++.++.+.
T Consensus 279 ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~~~G~lv~~~--d~~~la~~i~~ll~~~~~~~~~~ 353 (372)
T cd04949 279 AQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDGENGYLVPKG--DIEALAEAIIELLNDPKLLQKFS 353 (372)
T ss_pred hhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccCCCceEeCCC--cHHHHHHHHHHHHcCHHHHHHHH
Confidence 777763 2 44578999999999999875431 134556666788888755 79999999999999987666666
Q ss_pred HHHHHh
Q psy15582 416 VYSKLS 421 (477)
Q Consensus 416 ~~~~~~ 421 (477)
+.+...
T Consensus 354 ~~a~~~ 359 (372)
T cd04949 354 EAAYEN 359 (372)
T ss_pred HHHHHH
Confidence 655544
No 102
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.30 E-value=2.4e-05 Score=80.46 Aligned_cols=144 Identities=15% Similarity=0.123 Sum_probs=99.3
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC-------------CCCCCCeEEeecCChhhhhc
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL-------------PDLPSNVICRKWLPQHDILA 336 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~-------------~~~~~nv~i~~~vp~~~lL~ 336 (477)
.++.+++..|.....++ -..+++++....++.++.++++..+++.. .++.+||++.+..+-.+++
T Consensus 291 ~~~~~i~~vGrl~~~Kg-~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l- 368 (475)
T cd03813 291 KEPPVVGLIGRVVPIKD-IKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEYL- 368 (475)
T ss_pred CCCcEEEEEeccccccC-HHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHH-
Confidence 35667788899876442 24455555444445566887777665321 1356899999965556778
Q ss_pred CCCceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHc------CceEEccCCCCCHHHHHHHHHHHhc
Q psy15582 337 HPKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESM------DVARFLEYENITAETLVTLMKSILY 406 (477)
Q Consensus 337 h~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~------G~g~~l~~~~~~~~~l~~al~~ll~ 406 (477)
+++++++.. |-.+++.||+++|+|+|+.... .....+++. ..|..++.. +++++.+++.++++
T Consensus 369 -~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g----~~~elv~~~~~~~~g~~G~lv~~~--d~~~la~ai~~ll~ 441 (475)
T cd03813 369 -PKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVG----SCRELIEGADDEALGPAGEVVPPA--DPEALARAILRLLK 441 (475)
T ss_pred -HhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCC----ChHHHhcCCcccccCCceEEECCC--CHHHHHHHHHHHhc
Confidence 568888743 4457899999999999986543 334444442 378888755 79999999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy15582 407 NETVYRKSQVYSKLSN 422 (477)
Q Consensus 407 ~~~~~~~a~~~~~~~~ 422 (477)
|++.++++.+.++...
T Consensus 442 ~~~~~~~~~~~a~~~v 457 (475)
T cd03813 442 DPELRRAMGEAGRKRV 457 (475)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9988777766665433
No 103
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.29 E-value=0.00017 Score=73.89 Aligned_cols=195 Identities=10% Similarity=0.045 Sum_probs=111.5
Q ss_pred ccccEEEEecCccccCCcCCCCceEEeCccccCCC--CCCChhhHhhhhcC-CCceEEEecCCcccCCcccHHHHHHHHH
Q psy15582 221 ENKTLLFISTSWLLTYPRPVFPNTILLGPIHLNNP--KPLPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDKRKAIVD 297 (477)
Q Consensus 221 ~~~~~~l~~s~~~l~~~~~~~~~~~~vG~~~~~~~--~~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~~~~~~~i~~ 297 (477)
+..|..++--+.+-++-+...-++.|||--..+.. .+..++..+.++.. ++++|-+--||-... =.+.+..+++
T Consensus 360 k~vD~ll~IfPFE~~~y~~~gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~E---I~rllPv~l~ 436 (608)
T PRK01021 360 KYLDLLLLILPFEQNLFKDSPLRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGD---ILRNLTIQVQ 436 (608)
T ss_pred HHhhhheecCccCHHHHHhcCCCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCCCHHH---HHHHHHHHHH
Confidence 44555555555555554556667899996555542 12233344434332 568888888997651 2455666677
Q ss_pred HHh--hC-CCceEEEEecCCCCC----C-C-CC---CeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEEec
Q psy15582 298 SFK--QF-PRHRIIWKWEEDILP----D-L-PS---NVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGI 365 (477)
Q Consensus 298 al~--~~-~~~~~l~~~~~~~~~----~-~-~~---nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~ 365 (477)
+.+ .. ++.++++........ + . .. ++.+..--...+++ .+||+.+.-.| +.+.|++..|+||+++
T Consensus 437 aa~~~~l~~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m--~aaD~aLaaSG-TaTLEaAL~g~PmVV~ 513 (608)
T PRK01021 437 AFLASSLASTHQLLVSSANPKYDHLILEVLQQEGCLHSHIVPSQFRYELM--RECDCALAKCG-TIVLETALNQTPTIVT 513 (608)
T ss_pred HHHHHHhccCeEEEEecCchhhHHHHHHHHhhcCCCCeEEecCcchHHHH--HhcCeeeecCC-HHHHHHHHhCCCEEEE
Confidence 765 43 347787755432210 1 1 11 22332210124567 45899888877 5688999999999964
Q ss_pred -cCCcchHHHHHHHHHc---C-------ceEE----cc--CCCCCHHHHHHHHHHHhcCHHHH----HHHHHHHHHhh
Q psy15582 366 -PFFADQDTNVRKLESM---D-------VARF----LE--YENITAETLVTLMKSILYNETVY----RKSQVYSKLSN 422 (477)
Q Consensus 366 -P~~~dQ~~na~~~~~~---G-------~g~~----l~--~~~~~~~~l~~al~~ll~~~~~~----~~a~~~~~~~~ 422 (477)
-...=-..-++++.+. = +|.. +- .++.|++++.+++ ++|.|++.+ ++.+++.+.+.
T Consensus 514 YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg 590 (608)
T PRK01021 514 CQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAMN 590 (608)
T ss_pred EecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhc
Confidence 3332334556666651 1 1211 22 3467999999997 888786544 44445555554
No 104
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.28 E-value=3.7e-06 Score=82.92 Aligned_cols=134 Identities=15% Similarity=0.165 Sum_probs=96.3
Q ss_pred eEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC----CCCCCeEEeecCChhh---hhcCCCceEEEE
Q psy15582 273 VIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP----DLPSNVICRKWLPQHD---ILAHPKVKLFIM 345 (477)
Q Consensus 273 ~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~----~~~~nv~i~~~vp~~~---lL~h~~~~~~I~ 345 (477)
..++..|+... ..-...+++++++.+ .++++..++...+ ...+||.+.+++|+.+ ++ .++++++.
T Consensus 196 ~~il~~G~~~~-----~K~~~~li~a~~~~~-~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~--~~ad~~v~ 267 (351)
T cd03804 196 DYYLSVGRLVP-----YKRIDLAIEAFNKLG-KRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLY--ARARAFLF 267 (351)
T ss_pred CEEEEEEcCcc-----ccChHHHHHHHHHCC-CcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHH--HhCCEEEE
Confidence 34667788765 334566778888888 8888877764322 4578999999999854 56 45888874
Q ss_pred c---CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH-HHHHHHHHHHHH
Q psy15582 346 Q---GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE-TVYRKSQVYSKL 420 (477)
Q Consensus 346 h---gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~-~~~~~a~~~~~~ 420 (477)
. |-..++.||+++|+|+|+....+ ....+++.+.|..++.+ +++++.++|.++++|+ ..++++++.++.
T Consensus 268 ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~~~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~ 340 (351)
T cd03804 268 PAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDGVTGILFEEQ--TVESLAAAVERFEKNEDFDPQAIRAHAER 340 (351)
T ss_pred CCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCCCCEEEeCCC--CHHHHHHHHHHHHhCcccCHHHHHHHHHh
Confidence 2 22356889999999999886543 33445666789988755 7899999999999987 455555554443
No 105
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.28 E-value=1.5e-05 Score=77.99 Aligned_cols=189 Identities=15% Similarity=0.163 Sum_probs=111.9
Q ss_pred ccccEEEEecCccccCCcCCCCceEEeCccccCCCC--CCChhhHhh-hhcCCCceEEEecCCcccCCcccHHHHHHHHH
Q psy15582 221 ENKTLLFISTSWLLTYPRPVFPNTILLGPIHLNNPK--PLPQNLKDW-IEGAKDGVIYFSLGTNMQSASLQEDKRKAIVD 297 (477)
Q Consensus 221 ~~~~~~l~~s~~~l~~~~~~~~~~~~vG~~~~~~~~--~~~~~l~~~-l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~ 297 (477)
+..|..++-.+++-++-....-++.|||--..+... ..+.+..+. ++. ++++|.+--||-... =.+.+..+++
T Consensus 132 ~~~D~ll~ifPFE~~~y~~~g~~~~~VGHPl~d~~~~~~~~~~~~~~~l~~-~~~iIaLLPGSR~~E---I~rllP~~l~ 207 (373)
T PF02684_consen 132 KYVDHLLVIFPFEPEFYKKHGVPVTYVGHPLLDEVKPEPDRAEAREKLLDP-DKPIIALLPGSRKSE---IKRLLPIFLE 207 (373)
T ss_pred HHHhheeECCcccHHHHhccCCCeEEECCcchhhhccCCCHHHHHHhcCCC-CCcEEEEeCCCCHHH---HHHHHHHHHH
Confidence 445666665555555555555678999965555422 122333333 343 688899988997551 1333333444
Q ss_pred HH----hhCCCceEEEEecCCCCC--------CCCCCeEEeecC-ChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEEe
Q psy15582 298 SF----KQFPRHRIIWKWEEDILP--------DLPSNVICRKWL-PQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIG 364 (477)
Q Consensus 298 al----~~~~~~~~l~~~~~~~~~--------~~~~nv~i~~~v-p~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~ 364 (477)
+. ++.++.++++........ ....++.+.... +-.+++. .+++.+.-.| +.+.|+...|+||++
T Consensus 208 aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~--~ad~al~~SG-TaTLE~Al~g~P~Vv 284 (373)
T PF02684_consen 208 AAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMA--AADAALAASG-TATLEAALLGVPMVV 284 (373)
T ss_pred HHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHH--hCcchhhcCC-HHHHHHHHhCCCEEE
Confidence 43 344668888877653211 122333333222 2344663 4777776666 678999999999985
Q ss_pred c-cCCcchHHHHHHHHHcCc-eE---E--------ccCCCCCHHHHHHHHHHHhcCHHHHHHHHH
Q psy15582 365 I-PFFADQDTNVRKLESMDV-AR---F--------LEYENITAETLVTLMKSILYNETVYRKSQV 416 (477)
Q Consensus 365 ~-P~~~dQ~~na~~~~~~G~-g~---~--------l~~~~~~~~~l~~al~~ll~~~~~~~~a~~ 416 (477)
+ -...=.+..|+++.+... |+ . +-.++.|++.+.+++.++|+|++.++....
T Consensus 285 ~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~ 349 (373)
T PF02684_consen 285 AYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKE 349 (373)
T ss_pred EEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5 444345667777766432 11 1 123478999999999999999765444333
No 106
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=2.2e-05 Score=63.03 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=78.4
Q ss_pred EEEecCCcccCCcccHHHHHHH-HHHHhhCCCceEEEEecCCCCCCCCCCeEEeecC--ChhhhhcCCCceEEEEcCChh
Q psy15582 274 IYFSLGTNMQSASLQEDKRKAI-VDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWL--PQHDILAHPKVKLFIMQGGLQ 350 (477)
Q Consensus 274 V~vs~Gs~~~~~~~~~~~~~~i-~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~v--p~~~lL~h~~~~~~I~hgG~~ 350 (477)
+||+.||.... + .+....+ ..-+.+..+-++|+.+|..+.... ...++.+|. +..+-+-| .++++|+|+|.|
T Consensus 2 ifVTvGstf~~--f-~rlv~k~e~~el~~~i~e~lIvQyGn~d~kpv-agl~v~~F~~~~kiQsli~-darIVISHaG~G 76 (161)
T COG5017 2 IFVTVGSTFYP--F-NRLVLKIEVLELTELIQEELIVQYGNGDIKPV-AGLRVYGFDKEEKIQSLIH-DARIVISHAGEG 76 (161)
T ss_pred eEEEecCccch--H-HHHHhhHHHHHHHHHhhhheeeeecCCCcccc-cccEEEeechHHHHHHHhh-cceEEEeccCcc
Confidence 78999998552 2 2222221 223344454789999987554332 235666554 44443443 477999999999
Q ss_pred HHHHHHHhCCcEEeccCC--------cchHHHHHHHHHcCceEEccCC
Q psy15582 351 SSQEAIHFGVPMIGIPFF--------ADQDTNVRKLESMDVARFLEYE 390 (477)
Q Consensus 351 s~~Eal~~GvP~i~~P~~--------~dQ~~na~~~~~~G~g~~l~~~ 390 (477)
|+..++..++|.|++|-. .+|-.-|..+.+.+.-+...+.
T Consensus 77 SIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~spt 124 (161)
T COG5017 77 SILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSPT 124 (161)
T ss_pred hHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcCC
Confidence 999999999999999953 4899999999999998888754
No 107
>PLN02939 transferase, transferring glycosyl groups
Probab=98.24 E-value=0.00093 Score=71.97 Aligned_cols=138 Identities=9% Similarity=0.029 Sum_probs=87.3
Q ss_pred ceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC------C------CCCCCeEEeecCChh---hhhc
Q psy15582 272 GVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL------P------DLPSNVICRKWLPQH---DILA 336 (477)
Q Consensus 272 ~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~------~------~~~~nv~i~~~vp~~---~lL~ 336 (477)
.+++...|.....+.+ ..+++++...+ ..+ .++++..+|+.. . ...++|.+..+++.. .++
T Consensus 779 ~pLIg~VGRL~~QKGi-DlLleA~~~Ll-~~d-vqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IY- 854 (977)
T PLN02939 779 QPLVGCITRLVPQKGV-HLIRHAIYKTA-ELG-GQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIY- 854 (977)
T ss_pred ceEEEEeecCCcccCh-HHHHHHHHHHh-hcC-CEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHH-
Confidence 4677778888775421 23333332222 334 888887766321 1 235689999888875 367
Q ss_pred CCCceEEEEc----CChhHHHHHHHhCCcEEeccCCc--chHHH--HHHH-HHcCceEEccCCCCCHHHHHHHHHHHhc-
Q psy15582 337 HPKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFA--DQDTN--VRKL-ESMDVARFLEYENITAETLVTLMKSILY- 406 (477)
Q Consensus 337 h~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~--dQ~~n--a~~~-~~~G~g~~l~~~~~~~~~l~~al~~ll~- 406 (477)
..+|+|+.- |-..+.+||+++|+|.|+....+ |--.+ ...+ ++-+-|..++.. +++.+.++|.++++
T Consensus 855 -AaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~--D~eaLa~AL~rAL~~ 931 (977)
T PLN02939 855 -AASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTP--DEQGLNSALERAFNY 931 (977)
T ss_pred -HhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCC--CHHHHHHHHHHHHHH
Confidence 669999853 44578999999999999876644 21111 1111 123568777654 88899999988764
Q ss_pred ---CHHHHHHHHH
Q psy15582 407 ---NETVYRKSQV 416 (477)
Q Consensus 407 ---~~~~~~~a~~ 416 (477)
|+..++++.+
T Consensus 932 ~~~dpe~~~~L~~ 944 (977)
T PLN02939 932 YKRKPEVWKQLVQ 944 (977)
T ss_pred hccCHHHHHHHHH
Confidence 6776666654
No 108
>PLN02949 transferase, transferring glycosyl groups
Probab=98.23 E-value=0.0013 Score=67.00 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=90.8
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhC----CCceEEEEecCCC---------C------CCCCCCeEEeecCCh
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQF----PRHRIIWKWEEDI---------L------PDLPSNVICRKWLPQ 331 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~----~~~~~l~~~~~~~---------~------~~~~~nv~i~~~vp~ 331 (477)
++.++++.|.....++ -...++++.+..++. +++++++..++.. + .++.++|.+.+++|+
T Consensus 267 ~~~~il~vGR~~~~Kg-~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~ 345 (463)
T PLN02949 267 DPPYIISVAQFRPEKA-HALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSY 345 (463)
T ss_pred CCCEEEEEEeeeccCC-HHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCH
Confidence 4456778898776442 244555555444322 3477777665421 1 135789999999987
Q ss_pred hh---hhcCCCceEEEEc---CC-hhHHHHHHHhCCcEEeccCCcchHHHHHHHHH--cC-ceEEccCCCCCHHHHHHHH
Q psy15582 332 HD---ILAHPKVKLFIMQ---GG-LQSSQEAIHFGVPMIGIPFFADQDTNVRKLES--MD-VARFLEYENITAETLVTLM 401 (477)
Q Consensus 332 ~~---lL~h~~~~~~I~h---gG-~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~--~G-~g~~l~~~~~~~~~l~~al 401 (477)
.+ +| .+++++++- -| ..++.||+++|+|+|+....+-- ...+.+ .| .|...+ ++++++++|
T Consensus 346 ~el~~ll--~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~~----~~~~la~ai 416 (463)
T PLN02949 346 RDLVRLL--GGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLAT----TVEEYADAI 416 (463)
T ss_pred HHHHHHH--HhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccCC----CHHHHHHHH
Confidence 54 56 447888731 22 35799999999999988654310 000111 12 344442 789999999
Q ss_pred HHHhc-CHHHHHHHHHHHHHhhcCCCChHHHHHHH
Q psy15582 402 KSILY-NETVYRKSQVYSKLSNTQMMSPKDTAVWW 435 (477)
Q Consensus 402 ~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ 435 (477)
.++++ +++.++++.+.++....+ ++...-+.++
T Consensus 417 ~~ll~~~~~~r~~m~~~ar~~~~~-FS~e~~~~~~ 450 (463)
T PLN02949 417 LEVLRMRETERLEIAAAARKRANR-FSEQRFNEDF 450 (463)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHH-cCHHHHHHHH
Confidence 99998 455555554444433322 4544443333
No 109
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=98.23 E-value=2.9e-07 Score=77.74 Aligned_cols=52 Identities=25% Similarity=0.449 Sum_probs=42.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC--CCCCeeEEEcccc
Q psy15582 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE--PPVNYTDIDLSFS 84 (477)
Q Consensus 32 IL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~--~~~~~~~~~~~~~ 84 (477)
||+ .+.|+.||++|+++||++|++|||+|++.++..... ...|+++..++..
T Consensus 1 Ili-~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 1 ILI-ATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAGLEFVPIPGD 54 (139)
T ss_dssp EEE-EEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-EEEESSSC
T ss_pred CEE-EEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccCceEEEecCC
Confidence 566 788999999999999999999999999999954443 4689999988765
No 110
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.22 E-value=0.00019 Score=71.06 Aligned_cols=128 Identities=16% Similarity=0.210 Sum_probs=80.1
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCC--C-------CC-C--CCCeEEeecCChh---hhh
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI--L-------PD-L--PSNVICRKWLPQH---DIL 335 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~--~-------~~-~--~~nv~i~~~vp~~---~lL 335 (477)
++.|++.+-........+.+.+..+++++.+.+ ..+++.+.... . .. . .+|+.+.+-++.. .++
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~-~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll 279 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELN-KNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLL 279 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhc-cCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHH
Confidence 467777775433112235678899999998876 44444432211 1 00 1 4689998876654 467
Q ss_pred cCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEE-ccCCCCCHHHHHHHHHHHhcCHHHHHH
Q psy15582 336 AHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARF-LEYENITAETLVTLMKSILYNETVYRK 413 (477)
Q Consensus 336 ~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~-l~~~~~~~~~l~~al~~ll~~~~~~~~ 413 (477)
. +++++|+-.|.+- .||.+.|+|.|.+- +- ....+.|..+. +. .++++|.+++.+++ ++.++++
T Consensus 280 ~--~a~~vitdSSggi-~EA~~lg~Pvv~l~---~R----~e~~~~g~nvl~vg---~~~~~I~~a~~~~~-~~~~~~~ 344 (365)
T TIGR03568 280 K--NADAVIGNSSSGI-IEAPSFGVPTINIG---TR----QKGRLRADSVIDVD---PDKEEIVKAIEKLL-DPAFKKS 344 (365)
T ss_pred H--hCCEEEEcChhHH-HhhhhcCCCEEeec---CC----chhhhhcCeEEEeC---CCHHHHHHHHHHHh-ChHHHHH
Confidence 4 4999999886554 99999999999763 21 11123344433 43 37899999999965 4444443
No 111
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.20 E-value=0.0015 Score=65.63 Aligned_cols=117 Identities=13% Similarity=0.073 Sum_probs=72.2
Q ss_pred ceEEEecCCcccCCcccHHHHHHHHHHHhhCC-CceEEEEecCCCCCCCCCCeEEeecCCh----hhhhcCCCceEEEE-
Q psy15582 272 GVIYFSLGTNMQSASLQEDKRKAIVDSFKQFP-RHRIIWKWEEDILPDLPSNVICRKWLPQ----HDILAHPKVKLFIM- 345 (477)
Q Consensus 272 ~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~-~~~~l~~~~~~~~~~~~~nv~i~~~vp~----~~lL~h~~~~~~I~- 345 (477)
+.+++..|..... +......+++++...+ ++++++...++. ...+++...++... ..++ .++|+||.
T Consensus 241 ~~~il~v~~~~~~---~~Kg~~~li~A~~~l~~~~~L~ivG~g~~--~~~~~v~~~g~~~~~~~l~~~y--~~aDvfV~p 313 (405)
T PRK10125 241 KPKIAVVAHDLRY---DGKTDQQLVREMMALGDKIELHTFGKFSP--FTAGNVVNHGFETDKRKLMSAL--NQMDALVFS 313 (405)
T ss_pred CCEEEEEEecccc---CCccHHHHHHHHHhCCCCeEEEEEcCCCc--ccccceEEecCcCCHHHHHHHH--HhCCEEEEC
Confidence 3445555653221 1233355777777664 355555544332 23467777777643 2345 55888875
Q ss_pred ---cCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHH
Q psy15582 346 ---QGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMK 402 (477)
Q Consensus 346 ---hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~ 402 (477)
-|-.+++.||+++|+|+|.....+ ... +.+.+.|..++++ ++++|+++++
T Consensus 314 S~~Egfp~vilEAmA~G~PVVat~~gG----~~E-iv~~~~G~lv~~~--d~~~La~~~~ 366 (405)
T PRK10125 314 SRVDNYPLILCEALSIGVPVIATHSDA----ARE-VLQKSGGKTVSEE--EVLQLAQLSK 366 (405)
T ss_pred CccccCcCHHHHHHHcCCCEEEeCCCC----hHH-hEeCCcEEEECCC--CHHHHHhccC
Confidence 344588999999999999998765 222 3334579999876 7888887543
No 112
>PLN02316 synthase/transferase
Probab=98.19 E-value=0.0016 Score=71.40 Aligned_cols=162 Identities=7% Similarity=-0.129 Sum_probs=93.5
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC----------C----CCCCCeEEeecCChh---h
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL----------P----DLPSNVICRKWLPQH---D 333 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~----------~----~~~~nv~i~~~vp~~---~ 333 (477)
+.+++...|.....+. ..-+++++...+ +.+ .++|+..+|.+. . ..+++|.+....+.. .
T Consensus 839 d~plVg~VGRL~~qKG-vdlLi~Al~~ll-~~~-~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~ 915 (1036)
T PLN02316 839 DLPLVGIITRLTHQKG-IHLIKHAIWRTL-ERN-GQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHL 915 (1036)
T ss_pred cCeEEEEEeccccccC-HHHHHHHHHHHh-hcC-cEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHH
Confidence 4467777888876442 122233333333 224 888887765321 0 235678877666654 3
Q ss_pred hhcCCCceEEE----EcCChhHHHHHHHhCCcEEeccCCc--chHHH-------HHHHHHcCceEEccCCCCCHHHHHHH
Q psy15582 334 ILAHPKVKLFI----MQGGLQSSQEAIHFGVPMIGIPFFA--DQDTN-------VRKLESMDVARFLEYENITAETLVTL 400 (477)
Q Consensus 334 lL~h~~~~~~I----~hgG~~s~~Eal~~GvP~i~~P~~~--dQ~~n-------a~~~~~~G~g~~l~~~~~~~~~l~~a 400 (477)
++ ..+|+|+ +-|-..+.+|||++|+|.|+....+ |.-.. ++.....+.|..++.. +++.|..+
T Consensus 916 iy--aaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~--d~~aLa~A 991 (1036)
T PLN02316 916 IY--AGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGA--DAAGVDYA 991 (1036)
T ss_pred HH--HhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCC--CHHHHHHH
Confidence 56 6799998 4455578999999999988776543 22111 1100112578888754 89999999
Q ss_pred HHHHhcC-HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q psy15582 401 MKSILYN-ETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVL 440 (477)
Q Consensus 401 l~~ll~~-~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~ 440 (477)
|.+++.+ ...++.+.++++..-.+.++....|.+ .+.+.
T Consensus 992 L~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~-Y~~LY 1031 (1036)
T PLN02316 992 LNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALD-YMELY 1031 (1036)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHH-HHHHH
Confidence 9999965 243444444444432222454444333 33443
No 113
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.15 E-value=3.9e-05 Score=73.50 Aligned_cols=211 Identities=12% Similarity=0.093 Sum_probs=125.3
Q ss_pred ccccEEEEecCccccCCcCCCCceEEeCccccCCC--CCCChhhHhhhhcC-CCceEEEecCCcccCCcccHHHHHHHH-
Q psy15582 221 ENKTLLFISTSWLLTYPRPVFPNTILLGPIHLNNP--KPLPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDKRKAIV- 296 (477)
Q Consensus 221 ~~~~~~l~~s~~~l~~~~~~~~~~~~vG~~~~~~~--~~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~~~~~~~i~- 296 (477)
+.+|.++.--+++-++.....-...|||--..+.. .+.++.+.+-+... +++++.+-.||-...- ..+...+.
T Consensus 135 ~~~D~lLailPFE~~~y~k~g~~~~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI---~rl~~~f~~ 211 (381)
T COG0763 135 KYVDHLLAILPFEPAFYDKFGLPCTYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRSEI---RRLLPPFVQ 211 (381)
T ss_pred HHhhHeeeecCCCHHHHHhcCCCeEEeCChhhhhccccccHHHHHHHhCCCCCCCeEEEecCCcHHHH---HHHHHHHHH
Confidence 44565555555444444444334889997555542 23334455555443 6888888889876521 23333333
Q ss_pred --HHHh-hCCCceEEEEecCCCCC-------CC---CCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEE
Q psy15582 297 --DSFK-QFPRHRIIWKWEEDILP-------DL---PSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMI 363 (477)
Q Consensus 297 --~al~-~~~~~~~l~~~~~~~~~-------~~---~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i 363 (477)
+.++ +.++.+|++........ .. ..++++.+.--. ..+ ..+|+.+...| +-+.|++-+|+||+
T Consensus 212 a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~--~~aD~al~aSG-T~tLE~aL~g~P~V 287 (381)
T COG0763 212 AAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEKR-KAF--AAADAALAASG-TATLEAALAGTPMV 287 (381)
T ss_pred HHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCchHH-HHH--HHhhHHHHhcc-HHHHHHHHhCCCEE
Confidence 3333 55678999877654311 11 122333332222 245 34788877776 56889999999999
Q ss_pred ecc-CCcchHHHHHHHHHcCc--------eEE----ccCCCCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhcCCC
Q psy15582 364 GIP-FFADQDTNVRKLESMDV--------ARF----LEYENITAETLVTLMKSILYNE----TVYRKSQVYSKLSNTQMM 426 (477)
Q Consensus 364 ~~P-~~~dQ~~na~~~~~~G~--------g~~----l~~~~~~~~~l~~al~~ll~~~----~~~~~a~~~~~~~~~~~~ 426 (477)
+.= ...=-+.-+++..+... |.. +-.++.+++.|.+++..++.|. .+++..+++.+.++. .
T Consensus 288 v~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~--~ 365 (381)
T COG0763 288 VAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLRE--D 365 (381)
T ss_pred EEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcC--C
Confidence 652 21122344555544331 111 1124678999999999999987 577788888888887 2
Q ss_pred ChHHHHHHHHHHHH
Q psy15582 427 SPKDTAVWWIEYVL 440 (477)
Q Consensus 427 ~~~~~a~~~ie~~~ 440 (477)
.+.+.|++.+-.++
T Consensus 366 ~~~e~aA~~vl~~~ 379 (381)
T COG0763 366 PASEIAAQAVLELL 379 (381)
T ss_pred cHHHHHHHHHHHHh
Confidence 47888888876654
No 114
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.13 E-value=6.9e-05 Score=77.08 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=104.3
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC---------CCCCCeEEeecCChhhhhcCCCc
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP---------DLPSNVICRKWLPQHDILAHPKV 340 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~~~lL~h~~~ 340 (477)
.++.+++..|.....++ ...+++++....++.+++++++..+++..+ .+.++|.+.++.+...++ ..+
T Consensus 317 r~~~~il~vGrl~~~Kg-~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~--~~a 393 (500)
T TIGR02918 317 RKPFSIITASRLAKEKH-IDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHRNLSEVY--KDY 393 (500)
T ss_pred cCCeEEEEEeccccccC-HHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCCCHHHHH--HhC
Confidence 35567788899876543 245566666665566778877666553211 346789999998877888 458
Q ss_pred eEEEE----cCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCC--CCC----HHHHHHHHHHHhcCHHH
Q psy15582 341 KLFIM----QGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYE--NIT----AETLVTLMKSILYNETV 410 (477)
Q Consensus 341 ~~~I~----hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~--~~~----~~~l~~al~~ll~~~~~ 410 (477)
+++|. -|-..++.||+++|+|+|+....+ .+...+++...|..++.. .-+ .++++++|.++++ +..
T Consensus 394 dv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~ 469 (500)
T TIGR02918 394 ELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SND 469 (500)
T ss_pred CEEEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hHH
Confidence 88874 344578999999999999875431 234455555678877632 112 7889999999995 444
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy15582 411 YRKSQVYSKLSNTQMMSPKDTAVWWIE 437 (477)
Q Consensus 411 ~~~a~~~~~~~~~~~~~~~~~a~~~ie 437 (477)
++++.+.+.....+ ++....+..|.+
T Consensus 470 ~~~~~~~a~~~a~~-fs~~~v~~~w~~ 495 (500)
T TIGR02918 470 IDAFHEYSYQIAEG-FLTANIIEKWKK 495 (500)
T ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 55555555554433 555555555543
No 115
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.12 E-value=0.00039 Score=66.95 Aligned_cols=160 Identities=12% Similarity=0.139 Sum_probs=107.7
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCC-C-----C--CCCCCeEEee---cCChhhhhcCC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI-L-----P--DLPSNVICRK---WLPQHDILAHP 338 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~-~-----~--~~~~nv~i~~---~vp~~~lL~h~ 338 (477)
.++.++++.=.......--.+..+++.+.+++.+++.+|...-... . . +-.+|+++.+ |.+...++.+
T Consensus 203 ~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~- 281 (383)
T COG0381 203 DKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKN- 281 (383)
T ss_pred cCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHh-
Confidence 5678888765444421111445555555666665678887665431 0 1 1234677765 5556667755
Q ss_pred CceEEEEcCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy15582 339 KVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYS 418 (477)
Q Consensus 339 ~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~ 418 (477)
+.+++|--|. ---||-..|+|.+++-..-|++. ..+.|.-+.+.. +.+.+.+++.+++++++.+++++...
T Consensus 282 -a~~iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE----~v~agt~~lvg~---~~~~i~~~~~~ll~~~~~~~~m~~~~ 352 (383)
T COG0381 282 -AFLILTDSGG-IQEEAPSLGKPVLVLRDTTERPE----GVEAGTNILVGT---DEENILDAATELLEDEEFYERMSNAK 352 (383)
T ss_pred -ceEEEecCCc-hhhhHHhcCCcEEeeccCCCCcc----ceecCceEEeCc---cHHHHHHHHHHHhhChHHHHHHhccc
Confidence 8889988774 47799999999999988888876 334566666653 67999999999999999999888766
Q ss_pred HHhhcCCCChHHHHHHHHHHHHH
Q psy15582 419 KLSNTQMMSPKDTAVWWIEYVLK 441 (477)
Q Consensus 419 ~~~~~~~~~~~~~a~~~ie~~~~ 441 (477)
.-.-+ ....+++++.+.+...
T Consensus 353 npYgd--g~as~rIv~~l~~~~~ 373 (383)
T COG0381 353 NPYGD--GNASERIVEILLNYFD 373 (383)
T ss_pred CCCcC--cchHHHHHHHHHHHhh
Confidence 65555 3456666666655443
No 116
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.11 E-value=9.7e-05 Score=73.81 Aligned_cols=170 Identities=12% Similarity=0.182 Sum_probs=102.2
Q ss_pred hhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCC------------CCCCCCCeEEeecCChh
Q psy15582 265 WIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI------------LPDLPSNVICRKWLPQH 332 (477)
Q Consensus 265 ~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~------------~~~~~~nv~i~~~vp~~ 332 (477)
-++..++.++|.+|....+ +.++.++.-++.|++.| -..+|-..... ..-.++++.+.+..++.
T Consensus 278 ~~gLp~d~vvF~~fn~~~K---I~p~~l~~W~~IL~~vP-~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 278 QYGLPEDAVVFGSFNNLFK---ISPETLDLWARILKAVP-NSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp GGT--SSSEEEEE-S-GGG-----HHHHHHHHHHHHHST-TEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HH
T ss_pred HcCCCCCceEEEecCcccc---CCHHHHHHHHHHHHhCC-CcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHH
Confidence 3444468899999999888 78999999999999999 55555443321 11125789999888865
Q ss_pred hhh-cCCCceEEE---EcCChhHHHHHHHhCCcEEeccCCc-chHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcC
Q psy15582 333 DIL-AHPKVKLFI---MQGGLQSSQEAIHFGVPMIGIPFFA-DQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYN 407 (477)
Q Consensus 333 ~lL-~h~~~~~~I---~hgG~~s~~Eal~~GvP~i~~P~~~-dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 407 (477)
+-+ .+..+|+++ ..+|.+|++|||.+|||+|..|--. -.+.-+..+...|+.-.+-. +.++-.+.-.++-+|
T Consensus 354 ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~---s~~eYv~~Av~La~D 430 (468)
T PF13844_consen 354 EHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD---SEEEYVEIAVRLATD 430 (468)
T ss_dssp HHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S---SHHHHHHHHHHHHH-
T ss_pred HHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC---CHHHHHHHHHHHhCC
Confidence 533 224588887 4578899999999999999998432 44666777888899865543 677777777777788
Q ss_pred HHHHHHHHH-HHHHhhcCCCChHHHHHHHHHHHHH
Q psy15582 408 ETVYRKSQV-YSKLSNTQMMSPKDTAVWWIEYVLK 441 (477)
Q Consensus 408 ~~~~~~a~~-~~~~~~~~~~~~~~~a~~~ie~~~~ 441 (477)
++++++.++ +.++....|.......+.-+|..++
T Consensus 431 ~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 431 PERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 877666644 3333434344445666666777654
No 117
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.08 E-value=1.8e-05 Score=76.91 Aligned_cols=179 Identities=16% Similarity=0.166 Sum_probs=110.7
Q ss_pred CceEEeCccccCCCCCCChhhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCC--ceEEEEecCCC--CC
Q psy15582 242 PNTILLGPIHLNNPKPLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPR--HRIIWKWEEDI--LP 317 (477)
Q Consensus 242 ~~~~~vG~~~~~~~~~~~~~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~--~~~l~~~~~~~--~~ 317 (477)
.++.|+|.-..+.....+.+ ++ .+++|.+--||.... -.+.+..+.++..++.+ ..+++....+. ..
T Consensus 144 ~~~~~VGhPl~d~~~~~~~~----~~--~~~~I~llPGSR~~E---i~~llP~~~~aa~~L~~~~~~~~i~~a~~~~~i~ 214 (347)
T PRK14089 144 SKATYVGHPLLDEIKEFKKD----LD--KEGTIAFMPGSRKSE---IKRLMPIFKELAKKLEGKEKILVVPSFFKGKDLK 214 (347)
T ss_pred CCCEEECCcHHHhhhhhhhh----cC--CCCEEEEECCCCHHH---HHHHHHHHHHHHHHHhhcCcEEEEeCCCcHHHHH
Confidence 45668886444421111111 22 347777777776541 23555544556555432 34444433221 01
Q ss_pred C-CC--CCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEEe-ccCCcchHHHHHHHH---HcCceEEc---
Q psy15582 318 D-LP--SNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIG-IPFFADQDTNVRKLE---SMDVARFL--- 387 (477)
Q Consensus 318 ~-~~--~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~-~P~~~dQ~~na~~~~---~~G~g~~l--- 387 (477)
. .. ..+.+.+ +-.+++ ..+|++|+..|..|+ |++.+|+|+++ .....-|+.||+++. ..|++-.+
T Consensus 215 ~~~~~~~~~~~~~--~~~~~m--~~aDlal~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~Nii~~~ 289 (347)
T PRK14089 215 EIYGDISEFEISY--DTHKAL--LEAEFAFICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLANIFFDF 289 (347)
T ss_pred HHHhcCCCcEEec--cHHHHH--HhhhHHHhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHHHhcCC
Confidence 1 11 1333332 234567 459999999998888 99999999996 345568999999999 45665334
Q ss_pred ----------cCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy15582 388 ----------EYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEY 438 (477)
Q Consensus 388 ----------~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~ 438 (477)
-.++.|++.|.+++.+ +.....++...++.+.+.. ++.+++++.|.+
T Consensus 290 ~~~~~vvPEllQ~~~t~~~la~~i~~-~~~~~~~~~~~~l~~~l~~---~a~~~~A~~i~~ 346 (347)
T PRK14089 290 LGKEPLHPELLQEFVTVENLLKAYKE-MDREKFFKKSKELREYLKH---GSAKNVAKILKE 346 (347)
T ss_pred CcccccCchhhcccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHhcC---CHHHHHHHHHhc
Confidence 3456899999999988 3345677777777777742 788888887764
No 118
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.05 E-value=0.00022 Score=71.00 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=77.5
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCC-C--CC--CCCCeEEeecCChhh---hhcCCCceE
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI-L--PD--LPSNVICRKWLPQHD---ILAHPKVKL 342 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~-~--~~--~~~nv~i~~~vp~~~---lL~h~~~~~ 342 (477)
++.+++..|+.... ...+.+.++ .+..+++++++..+++. . .. ..+||++.+++|+.+ .+ ..+|+
T Consensus 204 ~~~~i~y~G~l~~~--~d~~ll~~l---a~~~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l--~~~Dv 276 (373)
T cd04950 204 PRPVIGYYGAIAEW--LDLELLEAL---AKARPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYL--AGFDV 276 (373)
T ss_pred CCCEEEEEeccccc--cCHHHHHHH---HHHCCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHH--HhCCE
Confidence 45577778988762 233444433 34456688888777521 1 11 247999999999765 45 34777
Q ss_pred EEE--------cCC-hhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 343 FIM--------QGG-LQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 343 ~I~--------hgG-~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
+|. .++ .+.+.|++++|+|+|..++. ...+..+.+.... + +++++.++|.+++.++
T Consensus 277 ~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~-------~~~~~~~~~~~~~-~--d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 277 AILPFRLNELTRATSPLKLFEYLAAGKPVVATPLP-------EVRRYEDEVVLIA-D--DPEEFVAAIEKALLED 341 (373)
T ss_pred EecCCccchhhhcCCcchHHHHhccCCCEEecCcH-------HHHhhcCcEEEeC-C--CHHHHHHHHHHHHhcC
Confidence 763 222 35699999999999988642 2223333333333 2 7999999999976543
No 119
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.93 E-value=0.00055 Score=62.18 Aligned_cols=91 Identities=16% Similarity=0.114 Sum_probs=56.6
Q ss_pred ecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC---------CCCCCeEEeecCChh---hhhcCCCceEEE
Q psy15582 277 SLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP---------DLPSNVICRKWLPQH---DILAHPKVKLFI 344 (477)
Q Consensus 277 s~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~~---~lL~h~~~~~~I 344 (477)
..|+....++ ....++.+.....+.+++++++..++.... ...+|+.+.++++.. ..+. ..+++++
T Consensus 109 ~~g~~~~~k~-~~~~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~di~l 186 (229)
T cd01635 109 FVGRLAPEKG-LDDLIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLL-AAADVFV 186 (229)
T ss_pred EEEeecccCC-HHHHHHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHh-hcCCEEE
Confidence 5555554321 123333333322223347777766654321 346799999987332 2332 3599999
Q ss_pred EcCC----hhHHHHHHHhCCcEEeccCCc
Q psy15582 345 MQGG----LQSSQEAIHFGVPMIGIPFFA 369 (477)
Q Consensus 345 ~hgG----~~s~~Eal~~GvP~i~~P~~~ 369 (477)
+... .+++.||+++|+|+|+.+..+
T Consensus 187 ~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 187 LPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred ecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 8776 799999999999999987654
No 120
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.88 E-value=0.00032 Score=71.47 Aligned_cols=121 Identities=14% Similarity=0.057 Sum_probs=84.9
Q ss_pred ceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC---------CCCCCeEEeecCChh-hhhcCCCce
Q psy15582 272 GVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP---------DLPSNVICRKWLPQH-DILAHPKVK 341 (477)
Q Consensus 272 ~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~~-~lL~h~~~~ 341 (477)
..++.+.|......+ ...+++.+.+.+++.+++++++..++...+ ++.++|++.++.++. .++ ..+|
T Consensus 398 ~~vIg~VgRl~~~Kg-~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~L--aaAD 474 (578)
T PRK15490 398 DTTIGGVFRFVGDKN-PFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWL--QKMN 474 (578)
T ss_pred CcEEEEEEEEehhcC-HHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHH--HhCC
Confidence 345566677655432 466777777777777778888887764321 356899999997664 366 5699
Q ss_pred EEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHH
Q psy15582 342 LFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLM 401 (477)
Q Consensus 342 ~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al 401 (477)
+|+.. |-.+++.||+++|+|+|+.... .+...+++...|..++.. +++.+.+++
T Consensus 475 VfVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG~nG~LVp~~--D~~aLa~ai 532 (578)
T PRK15490 475 VFILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEGVSGFILDDA--QTVNLDQAC 532 (578)
T ss_pred EEEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccCCcEEEECCC--ChhhHHHHH
Confidence 99853 3457999999999999988653 456667777789998865 455555554
No 121
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.76 E-value=0.0001 Score=61.58 Aligned_cols=124 Identities=19% Similarity=0.195 Sum_probs=68.8
Q ss_pred eEEEecCCcccCCcccHHHHHHHHHHH-hhCCCceEEEEecCC-CCCCC-CCCeEEeecCChh-hhhcCCCceEEEEc--
Q psy15582 273 VIYFSLGTNMQSASLQEDKRKAIVDSF-KQFPRHRIIWKWEED-ILPDL-PSNVICRKWLPQH-DILAHPKVKLFIMQ-- 346 (477)
Q Consensus 273 ~V~vs~Gs~~~~~~~~~~~~~~i~~al-~~~~~~~~l~~~~~~-~~~~~-~~nv~i~~~vp~~-~lL~h~~~~~~I~h-- 346 (477)
++++++|+....+. ...+++.+++.+ ++.+++++.+...+. .+... .+||++.++++.. +++. ++++++.-
T Consensus 3 ~~i~~~g~~~~~k~-~~~li~~~~~~l~~~~p~~~l~i~G~~~~~l~~~~~~~v~~~g~~~e~~~~l~--~~dv~l~p~~ 79 (135)
T PF13692_consen 3 LYIGYLGRIRPDKG-LEELIEAALERLKEKHPDIELIIIGNGPDELKRLRRPNVRFHGFVEELPEILA--AADVGLIPSR 79 (135)
T ss_dssp EEEE--S-SSGGGT-HHHHHH-HHHHHHHHSTTEEEEEECESS-HHCCHHHCTEEEE-S-HHHHHHHH--C-SEEEE-BS
T ss_pred cccccccccccccc-ccchhhhHHHHHHHHCcCEEEEEEeCCHHHHHHhcCCCEEEcCCHHHHHHHHH--hCCEEEEEee
Confidence 45566676654331 133444233344 344657776655542 23333 5699999999653 3664 47777752
Q ss_pred ---CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcC
Q psy15582 347 ---GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYN 407 (477)
Q Consensus 347 ---gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 407 (477)
|..+++.|++++|+|+|+.+. ......+..+.|..+ .+ +++++.++|.++++|
T Consensus 80 ~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~~~~~~~-~~--~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 80 FNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEEDGCGVLV-AN--DPEELAEAIERLLND 135 (135)
T ss_dssp S-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS---SEEEE--TT---HHHHHHHHHHHHH-
T ss_pred CCCcCcHHHHHHHHhCCCEEECCc-----chhhheeecCCeEEE-CC--CHHHHHHHHHHHhcC
Confidence 234899999999999999865 123344447888777 33 899999999999865
No 122
>PHA01633 putative glycosyl transferase group 1
Probab=97.69 E-value=0.00083 Score=65.03 Aligned_cols=131 Identities=11% Similarity=0.109 Sum_probs=79.1
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCc----eEEEEecCCCCC--CCCCCeEEee---cCChh---hhhcC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRH----RIIWKWEEDILP--DLPSNVICRK---WLPQH---DILAH 337 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~----~~l~~~~~~~~~--~~~~nv~i~~---~vp~~---~lL~h 337 (477)
.+..+++..|.....++ -..+++++....++.+++ +++.. +..... .++++|++.+ ++++. .++
T Consensus 146 ~~~~~i~~vGRl~~~KG-~~~LI~A~~~L~~~~p~~~~~i~l~iv-G~~~~~~l~l~~~V~f~g~~G~~~~~dl~~~y-- 221 (335)
T PHA01633 146 PDTIKFGIVSGLTKRKN-MDLMLQVFNELNTKYPDIAKKIHFFVI-SHKQFTQLEVPANVHFVAEFGHNSREYIFAFY-- 221 (335)
T ss_pred CCCeEEEEEeCCccccC-HHHHHHHHHHHHHhCCCccccEEEEEE-cHHHHHHcCCCCcEEEEecCCCCCHHHHHHHH--
Confidence 35567777788776442 234444444333333432 33333 322211 4678999884 55544 456
Q ss_pred CCceEEEEc----CChhHHHHHHHhCCcEEeccC------Ccch------HHHHHHHH--HcCceEEccCCCCCHHHHHH
Q psy15582 338 PKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPF------FADQ------DTNVRKLE--SMDVARFLEYENITAETLVT 399 (477)
Q Consensus 338 ~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~------~~dQ------~~na~~~~--~~G~g~~l~~~~~~~~~l~~ 399 (477)
..+|+++.- |-..++.||+++|+|+|..-. .+++ ..+..... +.|.|..++ ..+++++.+
T Consensus 222 ~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~--~~d~~~la~ 299 (335)
T PHA01633 222 GAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIH--KFQIEDMAN 299 (335)
T ss_pred HhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeec--CCCHHHHHH
Confidence 558999863 445789999999999997633 2332 22222222 357788876 458999999
Q ss_pred HHHHHhc
Q psy15582 400 LMKSILY 406 (477)
Q Consensus 400 al~~ll~ 406 (477)
+|.+++.
T Consensus 300 ai~~~~~ 306 (335)
T PHA01633 300 AIILAFE 306 (335)
T ss_pred HHHHHHh
Confidence 9999954
No 123
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.68 E-value=0.0062 Score=56.70 Aligned_cols=165 Identities=14% Similarity=0.110 Sum_probs=85.7
Q ss_pred hhhHhhhhcC-CCceEEEecCCcccCCcc---cHHHHHHHHHHHhhCCCceEEEEecCCCCCCC---CCCeEEe-ecCCh
Q psy15582 260 QNLKDWIEGA-KDGVIYFSLGTNMQSASL---QEDKRKAIVDSFKQFPRHRIIWKWEEDILPDL---PSNVICR-KWLPQ 331 (477)
Q Consensus 260 ~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~---~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~---~~nv~i~-~~vp~ 331 (477)
++.-+-+.-. +.+.|+.-+-+....... ..+....+++.+++.+ .+++...+. .++. -+|+.+. +-++.
T Consensus 170 ~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g--iV~ipr~~~-~~eife~~~n~i~pk~~vD~ 246 (346)
T COG1817 170 PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG--IVLIPREKE-QAEIFEGYRNIIIPKKAVDT 246 (346)
T ss_pred HHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHhCc--EEEecCchh-HHHHHhhhccccCCcccccH
Confidence 3444444443 346666555442221111 2334566666666654 222222221 2211 2333333 45566
Q ss_pred hhhhcCCCceEEEEcCChhHHHHHHHhCCcEE-eccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHH
Q psy15582 332 HDILAHPKVKLFIMQGGLQSSQEAIHFGVPMI-GIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETV 410 (477)
Q Consensus 332 ~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i-~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~ 410 (477)
.+++-+ ++++|+-|| +--.||+..|+|.| +.|- .-...-+.+.+.|.= ... .++.++.+.+.+.|.++..
T Consensus 247 l~Llyy--a~lvig~gg-TMarEaAlLGtpaIs~~pG--kll~vdk~lie~G~~--~~s--~~~~~~~~~a~~~l~~~~~ 317 (346)
T COG1817 247 LSLLYY--ATLVIGAGG-TMAREAALLGTPAISCYPG--KLLAVDKYLIEKGLL--YHS--TDEIAIVEYAVRNLKYRRL 317 (346)
T ss_pred HHHHhh--hheeecCCc-hHHHHHHHhCCceEEecCC--ccccccHHHHhcCce--eec--CCHHHHHHHHHHHhhchhh
Confidence 778855 889988765 45679999999999 5553 223334455665543 332 2455554444455544332
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q psy15582 411 YRKSQVYSKLSNTQMMSPKDTAVWWIEYVLKAE 443 (477)
Q Consensus 411 ~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~~~ 443 (477)
++ .-..+..++.+..++.+|.+.+..
T Consensus 318 kK-------~~~~k~e~~~~~ii~~ve~~~e~~ 343 (346)
T COG1817 318 KK-------TGVLKLEDPTRLIIDVVEEMLETS 343 (346)
T ss_pred cc-------ccccccccHHHHHHHHHHHHhhhc
Confidence 22 111112577888888888877643
No 124
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.62 E-value=0.0012 Score=64.56 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=80.5
Q ss_pred CCceEEEEecCCCCCCCCCCeEEeecCChhhhhcC-C-CceEEEEc-------C------ChhHHHHHHHhCCcEEeccC
Q psy15582 303 PRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAH-P-KVKLFIMQ-------G------GLQSSQEAIHFGVPMIGIPF 367 (477)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h-~-~~~~~I~h-------g------G~~s~~Eal~~GvP~i~~P~ 367 (477)
++.++++...+.......+||.+.+|+|+.++..+ . ...++... + -.+-+.|+|++|+|+|+.
T Consensus 189 ~~~~l~i~G~g~~~~~~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~-- 266 (333)
T PRK09814 189 QGIKLTVFGPNPEDLENSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW-- 266 (333)
T ss_pred CCCeEEEECCCccccccCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC--
Confidence 44777776666543356689999999998775321 1 12222111 1 113378899999999986
Q ss_pred CcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhcC
Q psy15582 368 FADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYN--ETVYRKSQVYSKLSNTQ 424 (477)
Q Consensus 368 ~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~--~~~~~~a~~~~~~~~~~ 424 (477)
++...+..+++.++|+.++ +.+++.+++.++..+ ..+++|++++++++++.
T Consensus 267 --~~~~~~~~V~~~~~G~~v~----~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~g 319 (333)
T PRK09814 267 --SKAAIADFIVENGLGFVVD----SLEELPEIIDNITEEEYQEMVENVKKISKLLRNG 319 (333)
T ss_pred --CCccHHHHHHhCCceEEeC----CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcc
Confidence 4467889999999999997 678899999886432 25788999999988863
No 125
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.52 E-value=0.00084 Score=69.18 Aligned_cols=160 Identities=13% Similarity=0.032 Sum_probs=92.3
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC---------CCCCCCeEEeecCChh---hhhcC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL---------PDLPSNVICRKWLPQH---DILAH 337 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~---------~~~~~nv~i~~~vp~~---~lL~h 337 (477)
.+..+++..|.....+ ..+.+-..++.+.+.+ .++++..+++.. ...++|+.+....++. .++
T Consensus 294 ~~~~~i~~vGrl~~~K--g~~~li~a~~~l~~~~-~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-- 368 (476)
T cd03791 294 PDAPLFGFVGRLTEQK--GIDLLLEALPELLELG-GQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIY-- 368 (476)
T ss_pred CCCCEEEEEeeccccc--cHHHHHHHHHHHHHcC-cEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH--
Confidence 3566788889887644 2333333334444445 788887766321 1236788765444443 255
Q ss_pred CCceEEEEc----CChhHHHHHHHhCCcEEeccCCc--chHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHH
Q psy15582 338 PKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFA--DQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVY 411 (477)
Q Consensus 338 ~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~--dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~ 411 (477)
..+|+++.- |...+.+||+++|+|+|+....+ |.-.+.....+.|.|..++.. +++++.+++.++++...-+
T Consensus 369 ~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~--~~~~l~~~i~~~l~~~~~~ 446 (476)
T cd03791 369 AGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGY--NADALLAALRRALALYRDP 446 (476)
T ss_pred HhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCC--CHHHHHHHHHHHHHHHcCH
Confidence 568999843 33367899999999999876543 211111111134589998755 7899999999988532112
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHH
Q psy15582 412 RKSQVYSKLSNTQMMSPKDTAVWWI 436 (477)
Q Consensus 412 ~~a~~~~~~~~~~~~~~~~~a~~~i 436 (477)
+..+++++....+.++....+.+++
T Consensus 447 ~~~~~~~~~~~~~~fsw~~~a~~~~ 471 (476)
T cd03791 447 EAWRKLQRNAMAQDFSWDRSAKEYL 471 (476)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHH
Confidence 3333333333333345444444433
No 126
>PHA01630 putative group 1 glycosyl transferase
Probab=97.49 E-value=0.0058 Score=59.56 Aligned_cols=162 Identities=15% Similarity=0.082 Sum_probs=84.9
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCe-EEeecCChhh---hhcCCCceEEEE-
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNV-ICRKWLPQHD---ILAHPKVKLFIM- 345 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv-~i~~~vp~~~---lL~h~~~~~~I~- 345 (477)
.+.+++..|.....++ ...+++++....++.++.++++..++.....+ .++ .+..++|+.+ ++ ..+|+++.
T Consensus 141 ~~~vl~~~g~~~~~Kg-~d~Li~A~~~l~~~~~~~~llivG~~~~~~~l-~~~~~~~~~v~~~~l~~~y--~~aDv~v~p 216 (331)
T PHA01630 141 HPCVLAILPHSWDRKG-GDIVVKIFHELQNEGYDFYFLIKSSNMLDPRL-FGLNGVKTPLPDDDIYSLF--AGCDILFYP 216 (331)
T ss_pred CCEEEEEeccccccCC-HHHHHHHHHHHHhhCCCEEEEEEeCcccchhh-ccccceeccCCHHHHHHHH--HhCCEEEEC
Confidence 4444444445433221 23444444333333344677666543221111 111 1233477554 46 56888873
Q ss_pred ---cCChhHHHHHHHhCCcEEeccCCc--chHH---HHHHHH-----------HcCceEEccCCCCCHHHHHHHHHHHhc
Q psy15582 346 ---QGGLQSSQEAIHFGVPMIGIPFFA--DQDT---NVRKLE-----------SMDVARFLEYENITAETLVTLMKSILY 406 (477)
Q Consensus 346 ---hgG~~s~~Eal~~GvP~i~~P~~~--dQ~~---na~~~~-----------~~G~g~~l~~~~~~~~~l~~al~~ll~ 406 (477)
-|...++.|||++|+|+|+....+ |.-. |...++ -.++|..++. +.+++.+++.+++.
T Consensus 217 S~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~---~~~~~~~~ii~~l~ 293 (331)
T PHA01630 217 VRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDP---DIEDAYQKLLEALA 293 (331)
T ss_pred CccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCC---CHHHHHHHHHHHHh
Confidence 333578999999999999886543 2211 111110 0245666553 56778888888887
Q ss_pred C---HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q psy15582 407 N---ETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVLK 441 (477)
Q Consensus 407 ~---~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~ 441 (477)
| +.+++++...++....+ ++ .+..++-++.+++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~-fs-~~~ia~k~~~l~~ 329 (331)
T PHA01630 294 NWTPEKKKENLEGRAILYREN-YS-YNAIAKMWEKILE 329 (331)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-CC-HHHHHHHHHHHHh
Confidence 6 45666665555544443 45 4444444555443
No 127
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.47 E-value=0.001 Score=65.18 Aligned_cols=181 Identities=13% Similarity=0.170 Sum_probs=98.9
Q ss_pred CceEEeCccccCCC----CCCChhh--HhhhhcCCCceEEEecCCcccCC-cccHHHHHHHHHHHhhCCCceEEEEecCC
Q psy15582 242 PNTILLGPIHLNNP----KPLPQNL--KDWIEGAKDGVIYFSLGTNMQSA-SLQEDKRKAIVDSFKQFPRHRIIWKWEED 314 (477)
Q Consensus 242 ~~~~~vG~~~~~~~----~~~~~~l--~~~l~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~i~~al~~~~~~~~l~~~~~~ 314 (477)
.++..+|....+.- +...++. ..++....++.+++++=...... .-..+.+..+++++.+.+++.+||.....
T Consensus 145 ~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~ 224 (346)
T PF02350_consen 145 ERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNN 224 (346)
T ss_dssp GGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-
T ss_pred CeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCC
Confidence 46777887655531 1222222 12222236888999883333321 11245566667777666458999999842
Q ss_pred C---------CCCCCCCeEEeecCChh---hhhcCCCceEEEEcCChhHHH-HHHHhCCcEEeccCCcchHHHHHHHHHc
Q psy15582 315 I---------LPDLPSNVICRKWLPQH---DILAHPKVKLFIMQGGLQSSQ-EAIHFGVPMIGIPFFADQDTNVRKLESM 381 (477)
Q Consensus 315 ~---------~~~~~~nv~i~~~vp~~---~lL~h~~~~~~I~hgG~~s~~-Eal~~GvP~i~~P~~~dQ~~na~~~~~~ 381 (477)
+ +... +|+++.+.+++. .++.+ ++++|+-.| ++. ||.+.|+|.|.+-..++.+ .....
T Consensus 225 p~~~~~i~~~l~~~-~~v~~~~~l~~~~~l~ll~~--a~~vvgdSs--GI~eEa~~lg~P~v~iR~~geRq----e~r~~ 295 (346)
T PF02350_consen 225 PRGSDIIIEKLKKY-DNVRLIEPLGYEEYLSLLKN--ADLVVGDSS--GIQEEAPSLGKPVVNIRDSGERQ----EGRER 295 (346)
T ss_dssp HHHHHHHHHHHTT--TTEEEE----HHHHHHHHHH--ESEEEESSH--HHHHHGGGGT--EEECSSS-S-H----HHHHT
T ss_pred chHHHHHHHHhccc-CCEEEECCCCHHHHHHHHhc--ceEEEEcCc--cHHHHHHHhCCeEEEecCCCCCH----HHHhh
Confidence 2 2344 599999877664 47755 999999998 566 9999999999984433322 22345
Q ss_pred CceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q psy15582 382 DVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWI 436 (477)
Q Consensus 382 G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~i 436 (477)
|.++.+. .+++++.+++++++++....+++.....-+.+ .+..+++++.+
T Consensus 296 ~~nvlv~---~~~~~I~~ai~~~l~~~~~~~~~~~~~npYgd--G~as~rI~~~L 345 (346)
T PF02350_consen 296 GSNVLVG---TDPEAIIQAIEKALSDKDFYRKLKNRPNPYGD--GNASERIVEIL 345 (346)
T ss_dssp TSEEEET---SSHHHHHHHHHHHHH-HHHHHHHHCS--TT-S--S-HHHHHHHHH
T ss_pred cceEEeC---CCHHHHHHHHHHHHhChHHHHhhccCCCCCCC--CcHHHHHHHhh
Confidence 6666644 48999999999999875555555443333443 35566666655
No 128
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.43 E-value=0.0016 Score=67.01 Aligned_cols=136 Identities=13% Similarity=0.052 Sum_probs=88.6
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCC-C--------CCCCCCeEEeecCChh---hhhcCC
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI-L--------PDLPSNVICRKWLPQH---DILAHP 338 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~-~--------~~~~~nv~i~~~vp~~---~lL~h~ 338 (477)
+..+++..|.....+ ..+.+-+.+..+.+.+ .++++..+++. . ...+.++.+....+.. .++ .
T Consensus 290 ~~~~i~~vGrl~~~K--g~~~li~a~~~l~~~~-~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~--~ 364 (473)
T TIGR02095 290 DVPLFGVISRLTQQK--GVDLLLAALPELLELG-GQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIY--A 364 (473)
T ss_pred CCCEEEEEecCcccc--ChHHHHHHHHHHHHcC-cEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHH--H
Confidence 567788889987744 2333333333333334 88888777631 1 1345678777666654 356 5
Q ss_pred CceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHc------CceEEccCCCCCHHHHHHHHHHHhc--
Q psy15582 339 KVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESM------DVARFLEYENITAETLVTLMKSILY-- 406 (477)
Q Consensus 339 ~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~------G~g~~l~~~~~~~~~l~~al~~ll~-- 406 (477)
.+|+++.- |-..+.+||+++|+|.|+....+ ....+++. +.|..++.. +++++.++|.++++
T Consensus 365 ~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~~~~--d~~~la~~i~~~l~~~ 438 (473)
T TIGR02095 365 GADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLFEEY--DPGALLAALSRALRLY 438 (473)
T ss_pred hCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEeCCC--CHHHHHHHHHHHHHHH
Confidence 69999853 33358899999999999876533 22233333 788888755 88999999999987
Q ss_pred --CHHHHHHHHHH
Q psy15582 407 --NETVYRKSQVY 417 (477)
Q Consensus 407 --~~~~~~~a~~~ 417 (477)
+++.++++.+.
T Consensus 439 ~~~~~~~~~~~~~ 451 (473)
T TIGR02095 439 RQDPSLWEALQKN 451 (473)
T ss_pred hcCHHHHHHHHHH
Confidence 76666555543
No 129
>PRK14098 glycogen synthase; Provisional
Probab=97.35 E-value=0.0027 Score=65.44 Aligned_cols=137 Identities=10% Similarity=0.035 Sum_probs=85.4
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCC-----C----CCCCCCeEEeecCChh---hhhcCC
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI-----L----PDLPSNVICRKWLPQH---DILAHP 338 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~-----~----~~~~~nv~i~~~vp~~---~lL~h~ 338 (477)
+..++...|.....+ ..+.+-..+..+.+.+ .++++..+++. + ...+++|.+.+.++.. .++ .
T Consensus 306 ~~~~i~~vgRl~~~K--G~d~li~a~~~l~~~~-~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~--a 380 (489)
T PRK14098 306 ETPLVGVIINFDDFQ--GAELLAESLEKLVELD-IQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAI--A 380 (489)
T ss_pred CCCEEEEeccccccC--cHHHHHHHHHHHHhcC-cEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHH--H
Confidence 456777888887654 2333333333333334 88888776642 1 1346789999988875 466 5
Q ss_pred CceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHh---cCHHHH
Q psy15582 339 KVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSIL---YNETVY 411 (477)
Q Consensus 339 ~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll---~~~~~~ 411 (477)
.+|+++.. |-..+.+||+++|+|.|+....+-........++.+.|..++.. +++.+.++|.+++ +|++..
T Consensus 381 ~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~--d~~~la~ai~~~l~~~~~~~~~ 458 (489)
T PRK14098 381 GLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDY--TPEALVAKLGEALALYHDEERW 458 (489)
T ss_pred hCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCC--CHHHHHHHHHHHHHHHcCHHHH
Confidence 69999843 22357899999999988776533111000011124678888754 7999999999865 465444
Q ss_pred HHH
Q psy15582 412 RKS 414 (477)
Q Consensus 412 ~~a 414 (477)
+++
T Consensus 459 ~~~ 461 (489)
T PRK14098 459 EEL 461 (489)
T ss_pred HHH
Confidence 443
No 130
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=97.11 E-value=0.004 Score=48.10 Aligned_cols=84 Identities=17% Similarity=0.069 Sum_probs=59.2
Q ss_pred cCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCC
Q psy15582 346 QGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQM 425 (477)
Q Consensus 346 hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~~ 425 (477)
+|-...+.|++++|+|+|.-+. ......+.+---++..+ +++++.+++..+++|++.+++..+.+...-.+.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~~~~~~~~~----~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~ 80 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFEDGEHIITYN----DPEELAEKIEYLLENPEERRRIAKNARERVLKR 80 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCCCCeEEEEC----CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 4555689999999999998754 33344433322456655 899999999999999987777766665544433
Q ss_pred CChHHHHHHHHH
Q psy15582 426 MSPKDTAVWWIE 437 (477)
Q Consensus 426 ~~~~~~a~~~ie 437 (477)
++...++.+++|
T Consensus 81 ~t~~~~~~~il~ 92 (92)
T PF13524_consen 81 HTWEHRAEQILE 92 (92)
T ss_pred CCHHHHHHHHHC
Confidence 677777766653
No 131
>PRK14099 glycogen synthase; Provisional
Probab=97.04 E-value=0.012 Score=60.71 Aligned_cols=143 Identities=9% Similarity=0.081 Sum_probs=82.7
Q ss_pred ceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCC-----C----CCCCCCe-EEeecCChhhhhcCCCce
Q psy15582 272 GVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI-----L----PDLPSNV-ICRKWLPQHDILAHPKVK 341 (477)
Q Consensus 272 ~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~-----~----~~~~~nv-~i~~~vp~~~lL~h~~~~ 341 (477)
.+++...|.....+++ ..+++++.. +.+.+ .++++..+++. + ...++++ .+.+|-....-+....+|
T Consensus 295 ~~li~~VgRL~~~KG~-d~Li~A~~~-l~~~~-~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aD 371 (485)
T PRK14099 295 ALLLGVISRLSWQKGL-DLLLEALPT-LLGEG-AQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGAD 371 (485)
T ss_pred CcEEEEEecCCccccH-HHHHHHHHH-HHhcC-cEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCC
Confidence 4455567887764421 233333322 22334 88888776642 1 1235565 567774443322224589
Q ss_pred EEEE----cCChhHHHHHHHhCCcEEeccCCc--chHHHHHHH-H--HcCceEEccCCCCCHHHHHHHHHH---HhcCHH
Q psy15582 342 LFIM----QGGLQSSQEAIHFGVPMIGIPFFA--DQDTNVRKL-E--SMDVARFLEYENITAETLVTLMKS---ILYNET 409 (477)
Q Consensus 342 ~~I~----hgG~~s~~Eal~~GvP~i~~P~~~--dQ~~na~~~-~--~~G~g~~l~~~~~~~~~l~~al~~---ll~~~~ 409 (477)
+|+. -|-..+.+||+++|+|.|+....+ |.-...... + ..+.|..++.. +++++.++|.+ +++|++
T Consensus 372 ifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~--d~~~La~ai~~a~~l~~d~~ 449 (485)
T PRK14099 372 ALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPV--TADALAAALRKTAALFADPV 449 (485)
T ss_pred EEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCC--CHHHHHHHHHHHHHHhcCHH
Confidence 9984 344467899999998777665433 221111101 1 11578888765 89999999997 677887
Q ss_pred HHHHHHHHHH
Q psy15582 410 VYRKSQVYSK 419 (477)
Q Consensus 410 ~~~~a~~~~~ 419 (477)
.++++.+.+.
T Consensus 450 ~~~~l~~~~~ 459 (485)
T PRK14099 450 AWRRLQRNGM 459 (485)
T ss_pred HHHHHHHHhh
Confidence 7776666543
No 132
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=96.90 E-value=0.014 Score=60.25 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=74.6
Q ss_pred CCeEEeecCC--h-hhhhcCCCceEEEEcC---ChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCH
Q psy15582 321 SNVICRKWLP--Q-HDILAHPKVKLFIMQG---GLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITA 394 (477)
Q Consensus 321 ~nv~i~~~vp--~-~~lL~h~~~~~~I~hg---G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~ 394 (477)
+.|.+.++.+ + ...+ ..++++|.-+ |.++..||+++|+|+| .......++...-|..++ +.
T Consensus 409 ~~v~f~gy~~e~dl~~~~--~~arl~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~~NG~li~----d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISAL--DKLRLIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHNKNGYIID----DI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHH--hhheEEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcCCCcEEeC----CH
Confidence 6788899888 4 3467 5589998544 7789999999999999 333456667777787774 78
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHH
Q psy15582 395 ETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWW 435 (477)
Q Consensus 395 ~~l~~al~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ 435 (477)
.+|.+++..+|.+++-.+++..-+-....+ ++....+..|
T Consensus 476 ~~l~~al~~~L~~~~~wn~~~~~sy~~~~~-yS~~~i~~kW 515 (519)
T TIGR03713 476 SELLKALDYYLDNLKNWNYSLAYSIKLIDD-YSSENIIERL 515 (519)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhHHHHHHHH
Confidence 999999999999987676666666655543 5555554444
No 133
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.01 E-value=0.39 Score=46.94 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=66.2
Q ss_pred CceEEEecC-CcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC-------CCCCCeEEeecCC--h-hhhhcCCC
Q psy15582 271 DGVIYFSLG-TNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP-------DLPSNVICRKWLP--Q-HDILAHPK 339 (477)
Q Consensus 271 ~~~V~vs~G-s~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~-------~~~~nv~i~~~vp--~-~~lL~h~~ 339 (477)
++.|.++.| +......++.+.+.++++.+.+.+ +++++.+++++.+ ..+..+.+.+-.+ + ..++ ..
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~-~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li--~~ 251 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKG-YQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALI--AG 251 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCC-CEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHH--hc
Confidence 689999999 554667899999999999999988 8999888774322 2222332444333 3 2466 45
Q ss_pred ceEEEEcCChhHHHHHHHhCCcEEec
Q psy15582 340 VKLFIMQGGLQSSQEAIHFGVPMIGI 365 (477)
Q Consensus 340 ~~~~I~hgG~~s~~Eal~~GvP~i~~ 365 (477)
+++||+- ..|-++=|.+.|+|+|.+
T Consensus 252 a~l~I~~-DSg~~HlAaA~~~P~I~i 276 (334)
T COG0859 252 ADLVIGN-DSGPMHLAAALGTPTIAL 276 (334)
T ss_pred CCEEEcc-CChHHHHHHHcCCCEEEE
Confidence 9998876 457788899999999954
No 134
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=95.88 E-value=0.71 Score=47.11 Aligned_cols=142 Identities=10% Similarity=0.070 Sum_probs=86.0
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCc----eEEEEecCC-----CCC-------C-----------C--C
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRH----RIIWKWEED-----ILP-------D-----------L--P 320 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~----~~l~~~~~~-----~~~-------~-----------~--~ 320 (477)
.+..|+++.|.....+++ ...++++...+++.|++ .++...++. ..+ + . .
T Consensus 257 ~~~~vIl~VgRLd~~KGi-~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~ 335 (456)
T TIGR02400 257 KGRKLIIGVDRLDYSKGL-PERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWT 335 (456)
T ss_pred CCCeEEEEccccccccCH-HHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCc
Confidence 355678899998775532 45556565556565643 233333211 000 0 0 1
Q ss_pred CCeEEeecCChhh---hhcCCCceEEEEc---CC-hhHHHHHHHhCCc----EEeccCCcchHHHHHHHHHcCceEEccC
Q psy15582 321 SNVICRKWLPQHD---ILAHPKVKLFIMQ---GG-LQSSQEAIHFGVP----MIGIPFFADQDTNVRKLESMDVARFLEY 389 (477)
Q Consensus 321 ~nv~i~~~vp~~~---lL~h~~~~~~I~h---gG-~~s~~Eal~~GvP----~i~~P~~~dQ~~na~~~~~~G~g~~l~~ 389 (477)
+-+.+.+.+++.+ ++ ..+|+++.- -| ..+..||+++|+| +|+.-..+-- ..+ +-|+.+++
T Consensus 336 pv~~l~~~~~~~el~aly--~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~~l---~~gllVnP 406 (456)
T TIGR02400 336 PIRYLNRSYDREELMALY--RAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----QEL---NGALLVNP 406 (456)
T ss_pred cEEEEcCCCCHHHHHHHH--HhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----HHh---CCcEEECC
Confidence 1223445667655 45 669999853 34 3678899999999 7766554422 122 24777776
Q ss_pred CCCCHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhc
Q psy15582 390 ENITAETLVTLMKSILYNE--TVYRKSQVYSKLSNT 423 (477)
Q Consensus 390 ~~~~~~~l~~al~~ll~~~--~~~~~a~~~~~~~~~ 423 (477)
. ++++++++|.++|+.+ +.+++++++.+....
T Consensus 407 ~--d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~ 440 (456)
T TIGR02400 407 Y--DIDGMADAIARALTMPLEEREERHRAMMDKLRK 440 (456)
T ss_pred C--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 5 8999999999999853 456666666666554
No 135
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.82 E-value=0.024 Score=44.02 Aligned_cols=77 Identities=14% Similarity=0.256 Sum_probs=50.0
Q ss_pred ceEEeCccccCCCCCCChhhHhhhhcC-CCceEEEecCCcccCCccc--HHHHHHHHHHHhhCCCceEEEEecCCCC---
Q psy15582 243 NTILLGPIHLNNPKPLPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQ--EDKRKAIVDSFKQFPRHRIIWKWEEDIL--- 316 (477)
Q Consensus 243 ~~~~vG~~~~~~~~~~~~~l~~~l~~~-~~~~V~vs~Gs~~~~~~~~--~~~~~~i~~al~~~~~~~~l~~~~~~~~--- 316 (477)
....+-++..+.+..+|+ |+... +++.|++++|+........ ...+..+++++..++ ..+|...+..+.
T Consensus 15 ~~~pmR~VPyNG~~~~P~----Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ld-vEvV~a~~~~~~~~l 89 (97)
T PF06722_consen 15 PRVPMRYVPYNGPAVVPD----WLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLD-VEVVVALPAAQRAEL 89 (97)
T ss_dssp TEEE-------SSEEEEG----GGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSS-SEEEEEETTCCCGGC
T ss_pred CcceeeecCCCCCCCCCc----ccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCC-cEEEEECCHHHHHhh
Confidence 344455554444444444 66554 7999999999998731112 258899999999997 999999998654
Q ss_pred CCCCCCeE
Q psy15582 317 PDLPSNVI 324 (477)
Q Consensus 317 ~~~~~nv~ 324 (477)
..+|+||+
T Consensus 90 g~lP~nVR 97 (97)
T PF06722_consen 90 GELPDNVR 97 (97)
T ss_dssp CS-TTTEE
T ss_pred CCCCCCCC
Confidence 46788885
No 136
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=95.80 E-value=0.24 Score=50.77 Aligned_cols=127 Identities=11% Similarity=0.132 Sum_probs=76.0
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCc----eEEEEecCC-----C---C----CCC--------C----C
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRH----RIIWKWEED-----I---L----PDL--------P----S 321 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~----~~l~~~~~~-----~---~----~~~--------~----~ 321 (477)
.+..++++.|.....+++ ...++++...+++.+++ .++...++. . . ..+ . .
T Consensus 262 ~~~~~il~vgRl~~~Kgi-~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~ 340 (460)
T cd03788 262 GGRKLIVGVDRLDYSKGI-PERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWT 340 (460)
T ss_pred CCCEEEEEecCccccCCH-HHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCce
Confidence 456778888998875532 45556555555555543 334333221 0 0 000 0 1
Q ss_pred Ce-EEeecCChhh---hhcCCCceEEEE---cCC-hhHHHHHHHhCCc----EEeccCCcchHHHHHHHHHcCceEEccC
Q psy15582 322 NV-ICRKWLPQHD---ILAHPKVKLFIM---QGG-LQSSQEAIHFGVP----MIGIPFFADQDTNVRKLESMDVARFLEY 389 (477)
Q Consensus 322 nv-~i~~~vp~~~---lL~h~~~~~~I~---hgG-~~s~~Eal~~GvP----~i~~P~~~dQ~~na~~~~~~G~g~~l~~ 389 (477)
++ .+.+++++.+ ++ ..+|+++. +-| ..++.||+++|+| +|+.-..+--.. ..-|+.+++
T Consensus 341 ~v~~~~g~v~~~el~~~y--~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-------~~~g~lv~p 411 (460)
T cd03788 341 PVRYLYRSLPREELAALY--RAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-------LSGALLVNP 411 (460)
T ss_pred eEEEEeCCCCHHHHHHHH--HhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-------cCCCEEECC
Confidence 23 3456777765 45 56899884 334 3678999999999 554433331111 234777775
Q ss_pred CCCCHHHHHHHHHHHhcCH
Q psy15582 390 ENITAETLVTLMKSILYNE 408 (477)
Q Consensus 390 ~~~~~~~l~~al~~ll~~~ 408 (477)
. +.++++++|.++++++
T Consensus 412 ~--d~~~la~ai~~~l~~~ 428 (460)
T cd03788 412 Y--DIDEVADAIHRALTMP 428 (460)
T ss_pred C--CHHHHHHHHHHHHcCC
Confidence 5 7899999999999864
No 137
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=95.76 E-value=0.11 Score=52.60 Aligned_cols=124 Identities=13% Similarity=0.231 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhhCCCceEEEEecCC------CCCCCCCCeEEe-ecCC-h-hhhhcCCCceEE--EEcCCh--hHHHHH
Q psy15582 289 EDKRKAIVDSFKQFPRHRIIWKWEED------ILPDLPSNVICR-KWLP-Q-HDILAHPKVKLF--IMQGGL--QSSQEA 355 (477)
Q Consensus 289 ~~~~~~i~~al~~~~~~~~l~~~~~~------~~~~~~~nv~i~-~~vp-~-~~lL~h~~~~~~--I~hgG~--~s~~Ea 355 (477)
...++.+....+++||+++=+..+.+ .+... +|++.. ++.+ . .+++.. |+++ |+||+. .++.||
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~Iga~te~s~kL~~L~~y-~nvvly~~~~~~~l~~ly~~--~dlyLdin~~e~~~~al~eA 367 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHIAALTEMSSKLMSLDKY-DNVKLYPNITTQKIQELYQT--CDIYLDINHGNEILNAVRRA 367 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEecCcccHHHHHHHhc-CCcEEECCcChHHHHHHHHh--ccEEEEccccccHHHHHHHH
Confidence 67788888888888988877655443 12233 666655 4566 3 357755 6555 567655 889999
Q ss_pred HHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhc
Q psy15582 356 IHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNT 423 (477)
Q Consensus 356 l~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~ 423 (477)
+.+|+|++..-..... ...+.. |-.++.+ +.+++.++|.++|++++..+.+...++....
T Consensus 368 ~~~G~pI~afd~t~~~---~~~i~~---g~l~~~~--~~~~m~~~i~~lL~d~~~~~~~~~~q~~~a~ 427 (438)
T TIGR02919 368 FEYNLLILGFEETAHN---RDFIAS---ENIFEHN--EVDQLISKLKDLLNDPNQFRELLEQQREHAN 427 (438)
T ss_pred HHcCCcEEEEecccCC---cccccC---CceecCC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 9999999977543211 112222 5455544 7899999999999998665555555555544
No 138
>KOG1111|consensus
Probab=95.74 E-value=2 Score=41.26 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=60.7
Q ss_pred eEEEecCCcccCCcccHHH-HHHHHHHHhhCCCceEEEEecCCCCC---------CCCCCeEEeecCChhh---hhcCCC
Q psy15582 273 VIYFSLGTNMQSASLQEDK-RKAIVDSFKQFPRHRIIWKWEEDILP---------DLPSNVICRKWLPQHD---ILAHPK 339 (477)
Q Consensus 273 ~V~vs~Gs~~~~~~~~~~~-~~~i~~al~~~~~~~~l~~~~~~~~~---------~~~~nv~i~~~vp~~~---lL~h~~ 339 (477)
...+..|.....+ +.++ .+.+-+.+.+.|+.+|++..+|+... .+.+.+.+.+-+|+++ +| .+
T Consensus 196 ~~ivv~sRLvyrK--GiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl--~~ 271 (426)
T KOG1111|consen 196 ITIVVASRLVYRK--GIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVL--VR 271 (426)
T ss_pred eEEEEEeeeeecc--chHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHH--hc
Confidence 4444455655433 3444 44444556678889999999886421 4678999999999875 56 34
Q ss_pred ceEEEEcC----ChhHHHHHHHhCCcEEeccC
Q psy15582 340 VKLFIMQG----GLQSSQEAIHFGVPMIGIPF 367 (477)
Q Consensus 340 ~~~~I~hg----G~~s~~Eal~~GvP~i~~P~ 367 (477)
=++|++-. =..++.||+++|+|++..-.
T Consensus 272 G~IFlntSlTEafc~~ivEAaScGL~VVsTrV 303 (426)
T KOG1111|consen 272 GDIFLNTSLTEAFCMVIVEAASCGLPVVSTRV 303 (426)
T ss_pred CcEEeccHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 56676432 11458899999999997643
No 139
>KOG4626|consensus
Probab=95.64 E-value=0.15 Score=51.95 Aligned_cols=162 Identities=14% Similarity=0.233 Sum_probs=101.9
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCC------------CCCCCCCeEEeecCChhh----
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI------------LPDLPSNVICRKWLPQHD---- 333 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~------------~~~~~~nv~i~~~vp~~~---- 333 (477)
++.+||.+|-.... +.++.++.-++.|++.| -.++|...... ..-.|++|.+.+-....+
T Consensus 757 ~d~vvf~~FNqLyK---idP~~l~~W~~ILk~VP-nS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr 832 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYK---IDPSTLQMWANILKRVP-NSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRR 832 (966)
T ss_pred CCeEEEeechhhhc---CCHHHHHHHHHHHHhCC-cceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHh
Confidence 58899999988887 67888999999999999 88888775422 112366777766544322
Q ss_pred -hhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcc-hHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHH
Q psy15582 334 -ILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFAD-QDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVY 411 (477)
Q Consensus 334 -lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~d-Q~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~ 411 (477)
.|++=..|-..+. |.+|.+|.+.+|+||+.+|.-.- -..-+..+...|+|-.+-. +.++-.+.-.++-.|.++.
T Consensus 833 ~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak---~~eEY~~iaV~Latd~~~L 908 (966)
T KOG4626|consen 833 GQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK---NREEYVQIAVRLATDKEYL 908 (966)
T ss_pred hhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh---hHHHHHHHHHHhhcCHHHH
Confidence 2322222333444 67899999999999999997432 2223344567899965543 5666666666666677776
Q ss_pred HHHHHHHHHhh-cCC-CChHHHHHHHHHHHH
Q psy15582 412 RKSQVYSKLSN-TQM-MSPKDTAVWWIEYVL 440 (477)
Q Consensus 412 ~~a~~~~~~~~-~~~-~~~~~~a~~~ie~~~ 440 (477)
++++.--+..+ ..| +++. +.+.-+|.+.
T Consensus 909 ~~lr~~l~~~r~~splfd~~-q~~~~LE~~y 938 (966)
T KOG4626|consen 909 KKLRAKLRKARASSPLFDTK-QYAKGLERLY 938 (966)
T ss_pred HHHHHHHHHHhcCCCccCch-HHHHHHHHHH
Confidence 66654333332 222 3333 3334455554
No 140
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.4 Score=48.77 Aligned_cols=130 Identities=12% Similarity=0.147 Sum_probs=88.0
Q ss_pred hcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecC-CCCC------------C-CCCCeEEeecCChh
Q psy15582 267 EGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEE-DILP------------D-LPSNVICRKWLPQH 332 (477)
Q Consensus 267 ~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~-~~~~------------~-~~~nv~i~~~vp~~ 332 (477)
+-.++.+||+|++...+ +.++.+..=++.++..| -.++|-.++ ++.+ + .++++++.+-.|..
T Consensus 425 glp~~avVf~c~~n~~K---~~pev~~~wmqIL~~vP-~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 425 GLPEDAVVFCCFNNYFK---ITPEVFALWMQILSAVP-NSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCCCeEEEEecCCccc---CCHHHHHHHHHHHHhCC-CcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCH
Confidence 33367789999999888 57888888899999999 566665544 2211 1 25788999888876
Q ss_pred hhh-cCCCceEEE---EcCChhHHHHHHHhCCcEEeccCCcchHH--HHH-HHHHcCceEEccCCCCCHHHHHHHHHHH
Q psy15582 333 DIL-AHPKVKLFI---MQGGLQSSQEAIHFGVPMIGIPFFADQDT--NVR-KLESMDVARFLEYENITAETLVTLMKSI 404 (477)
Q Consensus 333 ~lL-~h~~~~~~I---~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~--na~-~~~~~G~g~~l~~~~~~~~~l~~al~~l 404 (477)
+-+ .+..+|+|. --||.+|..|++-+|||++.. .|+|+. |+. .+...|+--.+-.. ..+-++.++.--
T Consensus 501 ~h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~--~G~~FasR~~~si~~~agi~e~vA~s--~~dYV~~av~~g 575 (620)
T COG3914 501 DHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTR--VGEQFASRNGASIATNAGIPELVADS--RADYVEKAVAFG 575 (620)
T ss_pred HHHHhhchhheeeecccCCCccchHHHHHhcCceeee--ccHHHHHhhhHHHHHhcCCchhhcCC--HHHHHHHHHHhc
Confidence 533 246688887 468999999999999999987 456653 333 34456665444321 334466665544
No 141
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.28 E-value=0.67 Score=46.72 Aligned_cols=96 Identities=14% Similarity=0.242 Sum_probs=70.9
Q ss_pred hhhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEE-ccCCCCCHHHHHHHHHHHhcC-HHH
Q psy15582 333 DILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARF-LEYENITAETLVTLMKSILYN-ETV 410 (477)
Q Consensus 333 ~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~-l~~~~~~~~~l~~al~~ll~~-~~~ 410 (477)
.++ .+|+++|..= .-++.-|+.+|+|.+.++. .+.....++..|..-. ++.++++.++|.+.+.++++| +.+
T Consensus 323 ~iI--s~~dl~ig~R-lHa~I~a~~~gvP~i~i~Y---~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~ 396 (426)
T PRK10017 323 KIL--GACELTVGTR-LHSAIISMNFGTPAIAINY---EHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPAL 396 (426)
T ss_pred HHH--hhCCEEEEec-chHHHHHHHcCCCEEEeee---hHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHHHH
Confidence 567 5599999652 3457788999999999987 3666777788898754 777888999999999999988 466
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy15582 411 YRKSQVYSKLSNTQMMSPKDTAVWWIE 437 (477)
Q Consensus 411 ~~~a~~~~~~~~~~~~~~~~~a~~~ie 437 (477)
+++.++.-..++. .+.+.+.+.+.
T Consensus 397 ~~~l~~~v~~~r~---~~~~~~~~~~~ 420 (426)
T PRK10017 397 NARLAEAVSRERQ---TGMQMVQSVLE 420 (426)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 7777666666655 34444444443
No 142
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.73 E-value=1.5 Score=41.84 Aligned_cols=131 Identities=15% Similarity=0.241 Sum_probs=77.3
Q ss_pred eEEEecCCcccCCcccHHHHHHHHHHHhhC----CCceEEEEecCCCC--------C--CCCCCeEEeecCCh---hhhh
Q psy15582 273 VIYFSLGTNMQSASLQEDKRKAIVDSFKQF----PRHRIIWKWEEDIL--------P--DLPSNVICRKWLPQ---HDIL 335 (477)
Q Consensus 273 ~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~----~~~~~l~~~~~~~~--------~--~~~~nv~i~~~vp~---~~lL 335 (477)
.+++..|.... ......+++++... ++..+++...+... . ...+++.+.++++. ..++
T Consensus 200 ~~i~~~g~~~~-----~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 274 (381)
T COG0438 200 FVVLYVGRLDP-----EKGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELL 274 (381)
T ss_pred eEEEEeeccCh-----hcCHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHH
Confidence 56777777443 22233333333333 22455555554431 1 22478888999983 2345
Q ss_pred cCCCceEEEEc---CCh-hHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHH
Q psy15582 336 AHPKVKLFIMQ---GGL-QSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVY 411 (477)
Q Consensus 336 ~h~~~~~~I~h---gG~-~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~ 411 (477)
..+++++.. .|. .++.||+++|+|+|.... ......+.+.+.|...... +.+++.+++..++++++.+
T Consensus 275 --~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~~~~g~~~~~~--~~~~~~~~i~~~~~~~~~~ 346 (381)
T COG0438 275 --ASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVEDGETGLLVPPG--DVEELADALEQLLEDPELR 346 (381)
T ss_pred --HhCCEEEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcCCCceEecCCC--CHHHHHHHHHHHhcCHHHH
Confidence 346777765 344 446999999999987754 2233333333346644322 6899999999999887555
Q ss_pred HHHHH
Q psy15582 412 RKSQV 416 (477)
Q Consensus 412 ~~a~~ 416 (477)
+...+
T Consensus 347 ~~~~~ 351 (381)
T COG0438 347 EELGE 351 (381)
T ss_pred HHHHH
Confidence 55544
No 143
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=94.32 E-value=1.1 Score=43.22 Aligned_cols=162 Identities=15% Similarity=0.201 Sum_probs=93.4
Q ss_pred hccccEEEEecCccccCCcCCCCce-EEeCccccCCCCCCChhhHhh---hhcCCCceEEEecCCcccCCcccHHHHHHH
Q psy15582 220 EENKTLLFISTSWLLTYPRPVFPNT-ILLGPIHLNNPKPLPQNLKDW---IEGAKDGVIYFSLGTNMQSASLQEDKRKAI 295 (477)
Q Consensus 220 ~~~~~~~l~~s~~~l~~~~~~~~~~-~~vG~~~~~~~~~~~~~l~~~---l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i 295 (477)
....|+++++.+..+. -.+|+ ...|+++.-.+..+.++-.+| +....++.+.|-.|+......+..+....+
T Consensus 95 ~~~FDlvi~p~HD~~~----~~~Nvl~t~ga~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l 170 (311)
T PF06258_consen 95 PRPFDLVIVPEHDRLP----RGPNVLPTLGAPNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERL 170 (311)
T ss_pred ccccCEEEECcccCcC----CCCceEecccCCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHH
Confidence 3567888888776442 12333 455665544333333322233 222257888888888776666777755554
Q ss_pred HHHH----hhCCCceEEEEecCCCCC----------CCCCCeEEeecC---ChhhhhcCCCceEE-EEcCChhHHHHHHH
Q psy15582 296 VDSF----KQFPRHRIIWKWEEDILP----------DLPSNVICRKWL---PQHDILAHPKVKLF-IMQGGLQSSQEAIH 357 (477)
Q Consensus 296 ~~al----~~~~~~~~l~~~~~~~~~----------~~~~nv~i~~~v---p~~~lL~h~~~~~~-I~hgG~~s~~Eal~ 357 (477)
+..+ ++.+ ..+.++.+..... +..+.+.+.+-- |+..+|+. +|.+ ||--..+-+.||+.
T Consensus 171 ~~~l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~--ad~i~VT~DSvSMvsEA~~ 247 (311)
T PF06258_consen 171 LDQLAALAAAYG-GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAA--ADAIVVTEDSVSMVSEAAA 247 (311)
T ss_pred HHHHHHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHh--CCEEEEcCccHHHHHHHHH
Confidence 4444 3334 5677776653211 123455444332 45567754 5555 55555577899999
Q ss_pred hCCcEEeccCCcchHH---HHHHHHHcCceEEcc
Q psy15582 358 FGVPMIGIPFFADQDT---NVRKLESMDVARFLE 388 (477)
Q Consensus 358 ~GvP~i~~P~~~dQ~~---na~~~~~~G~g~~l~ 388 (477)
.|+|+.++|...-... -.+.+++.|+-..++
T Consensus 248 tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~ 281 (311)
T PF06258_consen 248 TGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFT 281 (311)
T ss_pred cCCCEEEecCCCcchHHHHHHHHHHHCCCEEECC
Confidence 9999999988762222 233455667766665
No 144
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=94.20 E-value=0.29 Score=40.72 Aligned_cols=48 Identities=29% Similarity=0.337 Sum_probs=32.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC---CCCCeeEEEcc
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE---PPVNYTDIDLS 82 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~---~~~~~~~~~~~ 82 (477)
|||++...+ ..| ...++++|.++||+|++++...... ...++..+.++
T Consensus 1 KIl~i~~~~-~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~ 51 (139)
T PF13477_consen 1 KILLIGNTP-STF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLP 51 (139)
T ss_pred CEEEEecCc-HHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEec
Confidence 677744433 344 5678999999999999999944321 24566666553
No 145
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=93.52 E-value=0.056 Score=47.07 Aligned_cols=24 Identities=25% Similarity=0.291 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHh-CCCEEEEEee
Q psy15582 43 HQVPFIAIGKELVR-RGHTVTMIGT 66 (477)
Q Consensus 43 H~~~~l~la~~L~~-rGH~V~~~~~ 66 (477)
|...+.+|+++|.+ +|+++.+...
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~ 25 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVV 25 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 88899999999988 5665555544
No 146
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=93.24 E-value=1.1 Score=48.88 Aligned_cols=142 Identities=11% Similarity=0.107 Sum_probs=84.7
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCc----eEEEEecC--CCCC----------C-------------CC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRH----RIIWKWEE--DILP----------D-------------LP 320 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~----~~l~~~~~--~~~~----------~-------------~~ 320 (477)
.+..++++.|.....+++ ...++++...+++.|++ +++....+ +..+ . ..
T Consensus 263 ~~~~~il~VgRl~~~Kgi-~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~ 341 (726)
T PRK14501 263 RGRKIILSIDRLDYTKGI-PRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWT 341 (726)
T ss_pred CCCEEEEEecCcccccCH-HHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence 455688899999886643 55566666666666643 44444322 1100 0 01
Q ss_pred CCeEEeecCChhh---hhcCCCceEEEEc---CC-hhHHHHHHHhCCc---EEecc-CCcchHHHHHHHHHcCceEEccC
Q psy15582 321 SNVICRKWLPQHD---ILAHPKVKLFIMQ---GG-LQSSQEAIHFGVP---MIGIP-FFADQDTNVRKLESMDVARFLEY 389 (477)
Q Consensus 321 ~nv~i~~~vp~~~---lL~h~~~~~~I~h---gG-~~s~~Eal~~GvP---~i~~P-~~~dQ~~na~~~~~~G~g~~l~~ 389 (477)
+-+++.+++++.+ ++ ..+|+++.- -| ..+..||+++|+| .+++. ..+. +..+ .-|+.+++
T Consensus 342 pv~~~~~~~~~~~l~~ly--~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~----~~~l---~~~llv~P 412 (726)
T PRK14501 342 PIHYFYRSLPFEELVALY--RAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGA----AAEL---AEALLVNP 412 (726)
T ss_pred eEEEEeCCCCHHHHHHHH--HhccEEEecccccccCcccceEEEEcCCCCceEEEecccch----hHHh---CcCeEECC
Confidence 1234667888765 45 668888854 23 3678999999775 22222 2221 1111 23777776
Q ss_pred CCCCHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhc
Q psy15582 390 ENITAETLVTLMKSILYNE--TVYRKSQVYSKLSNT 423 (477)
Q Consensus 390 ~~~~~~~l~~al~~ll~~~--~~~~~a~~~~~~~~~ 423 (477)
. ++++++++|.++|+.+ +.+++++++.+....
T Consensus 413 ~--d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~ 446 (726)
T PRK14501 413 N--DIEGIAAAIKRALEMPEEEQRERMQAMQERLRR 446 (726)
T ss_pred C--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 5 7999999999999853 555566665555543
No 147
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=92.91 E-value=0.89 Score=43.99 Aligned_cols=128 Identities=13% Similarity=0.152 Sum_probs=79.7
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC-------C-CCCCCeEEeec--CCh-hhhhcCC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL-------P-DLPSNVICRKW--LPQ-HDILAHP 338 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~-------~-~~~~nv~i~~~--vp~-~~lL~h~ 338 (477)
.++.|.+..|+....+.+|.+.+.++++.+.+.+ +++++..+++.. . ..+ +..+.+- +++ ..++ .
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~-~~~vl~~g~~~e~~~~~~i~~~~~-~~~l~g~~sL~el~ali--~ 253 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARG-LQIVLPWGNDAEKQRAERIAEALP-GAVVLPKMSLAEVAALL--A 253 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCC-CeEEEeCCCHHHHHHHHHHHhhCC-CCeecCCCCHHHHHHHH--H
Confidence 4678888888777777899999999999997655 888776554211 0 122 2233332 334 3477 5
Q ss_pred CceEEEEcCChhHHHHHHHhCCcEEec--cCCcchHHHHHHHHHcCceEEc-cCCCCCHHHHHHHHHHHh
Q psy15582 339 KVKLFIMQGGLQSSQEAIHFGVPMIGI--PFFADQDTNVRKLESMDVARFL-EYENITAETLVTLMKSIL 405 (477)
Q Consensus 339 ~~~~~I~hgG~~s~~Eal~~GvP~i~~--P~~~dQ~~na~~~~~~G~g~~l-~~~~~~~~~l~~al~~ll 405 (477)
+|+++|+. ..|.++=|.+.|+|+|.+ |....+ .+= .......+.- ..++++++++.++++++|
T Consensus 254 ~a~l~I~~-DSgp~HlAaa~g~P~i~lfg~t~p~~--~~P-~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 254 GADAVVGV-DTGLTHLAAALDKPTVTLYGATDPGR--TGG-YGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred cCCEEEeC-CChHHHHHHHcCCCEEEEECCCCHhh--ccc-CCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 59999987 457788999999999965 221111 000 0000011111 245789999999998875
No 148
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.02 E-value=1.4 Score=41.29 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=50.0
Q ss_pred hHHHH-HHHhCCcEEeccCCcchHH--HHHHHHH-cCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcC
Q psy15582 350 QSSQE-AIHFGVPMIGIPFFADQDT--NVRKLES-MDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQ 424 (477)
Q Consensus 350 ~s~~E-al~~GvP~i~~P~~~dQ~~--na~~~~~-~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~ 424 (477)
||-.| +.=.|||+|.+|-.+-|+. -|.+-.+ .|+++++-.. .+..-..+.+++|.|+.+.+..+...++--.+
T Consensus 320 GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~--~aq~a~~~~q~ll~dp~r~~air~nGqrRiGq 396 (412)
T COG4370 320 GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP--EAQAAAQAVQELLGDPQRLTAIRHNGQRRIGQ 396 (412)
T ss_pred cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC--chhhHHHHHHHHhcChHHHHHHHhcchhhccC
Confidence 34344 3448999999999998864 4444444 5888887643 34444455666999999999998776654444
No 149
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=91.88 E-value=5.7 Score=36.60 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=78.7
Q ss_pred cccEEEEecCccccCCcCCCCceEE-eCccccCCCCCCChhhH---hhhhcCCCceEEEecCCcccCCcccHHHHHHHHH
Q psy15582 222 NKTLLFISTSWLLTYPRPVFPNTIL-LGPIHLNNPKPLPQNLK---DWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVD 297 (477)
Q Consensus 222 ~~~~~l~~s~~~l~~~~~~~~~~~~-vG~~~~~~~~~~~~~l~---~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~ 297 (477)
..|+++++-+.-.+.-..-.+|++. +|-.+.-.+..+-...+ ..+.. .++.|-|-.|+......+.++....++.
T Consensus 109 ~fDlvivp~HD~~~~~s~~~~Nilpi~Gs~h~Vt~~~lAa~~e~~~~~~p~-~rq~vAVlVGg~nk~f~~~~d~a~q~~~ 187 (329)
T COG3660 109 HFDLVIVPYHDWREELSDQGPNILPINGSPHNVTSQRLAALREAFKHLLPL-PRQRVAVLVGGNNKAFVFQEDKAHQFAS 187 (329)
T ss_pred cceEEeccchhhhhhhhccCCceeeccCCCCcccHHHhhhhHHHHHhhCCC-CCceEEEEecCCCCCCccCHHHHHHHHH
Confidence 3677777766555432212344443 34333222222222222 22233 5677777777776655565555555444
Q ss_pred ----HHhhCCCceEEEEecCCCCC--------CCC-CCeE-----EeecCChhhhhcCCCceEEEEcC-ChhHHHHHHHh
Q psy15582 298 ----SFKQFPRHRIIWKWEEDILP--------DLP-SNVI-----CRKWLPQHDILAHPKVKLFIMQG-GLQSSQEAIHF 358 (477)
Q Consensus 298 ----al~~~~~~~~l~~~~~~~~~--------~~~-~nv~-----i~~~vp~~~lL~h~~~~~~I~hg-G~~s~~Eal~~ 358 (477)
.+++.+ ..|+.+.+....+ ++. .-.. =.++=|+.++| ..+|.+|.-. ..|-+.||++.
T Consensus 188 ~l~k~l~~~g-~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~L--a~Adyii~TaDSinM~sEAasT 264 (329)
T COG3660 188 LLVKILENQG-GSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDML--AAADYIISTADSINMCSEAAST 264 (329)
T ss_pred HHHHHHHhCC-ceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHH--hhcceEEEecchhhhhHHHhcc
Confidence 455557 8899988764322 111 1111 22455888999 5588877555 55778999999
Q ss_pred CCcEEec
Q psy15582 359 GVPMIGI 365 (477)
Q Consensus 359 GvP~i~~ 365 (477)
|+|+.+.
T Consensus 265 gkPv~~~ 271 (329)
T COG3660 265 GKPVFIL 271 (329)
T ss_pred CCCeEEE
Confidence 9998755
No 150
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=91.46 E-value=0.23 Score=44.18 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=33.3
Q ss_pred cccEEEEcCC-CCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 29 SANVLIICPT-PSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 29 ~~kIL~~~~~-~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
|+||+++.+. +|-|-..-.-.|+.+|+.+|+.|.++-.+
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 6888885543 58899999999999999999999998884
No 151
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.21 E-value=1.7 Score=41.86 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=37.9
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEP 72 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~ 72 (477)
|.||++|.+-||-|-..-..++|-.|++.|..|.++++++....
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL 44 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL 44 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch
Confidence 56898888889999999999999999999999888888665544
No 152
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=90.68 E-value=1.6 Score=41.08 Aligned_cols=51 Identities=25% Similarity=0.353 Sum_probs=41.5
Q ss_pred HHhhccccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCCC
Q psy15582 22 AFLLTVESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEPP 73 (477)
Q Consensus 22 ~~~~~~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~~ 73 (477)
+.+.+.++..|=+ ...||-|--.-.-+|.+.|.++||.|-++.-++.....
T Consensus 44 l~p~tG~a~viGI-TG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~T 94 (323)
T COG1703 44 LYPRTGNAHVIGI-TGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFT 94 (323)
T ss_pred HhhcCCCCcEEEe-cCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCC
Confidence 3445566656655 99999999999999999999999999999997766543
No 153
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=90.06 E-value=18 Score=37.22 Aligned_cols=155 Identities=10% Similarity=0.045 Sum_probs=99.0
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCc----eEEEEecCCCC--C-----------------------CCC
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRH----RIIWKWEEDIL--P-----------------------DLP 320 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~----~~l~~~~~~~~--~-----------------------~~~ 320 (477)
++..|+++.|.....+.+ ...++++-..|++.|++ .+|....+... + ...
T Consensus 283 ~~~kiIl~VDRLDy~KGI-~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~ 361 (487)
T TIGR02398 283 AGVKLILSAERVDYTKGI-LEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWT 361 (487)
T ss_pred CCceEEEEecccccccCH-HHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 456788999999887654 56667777777888864 34433333110 0 112
Q ss_pred CCeEEeecCChhhhhc-CCCceEEEE---cCChhHH-HHHHHhCC----cEEeccCCcchHHHHHHHHHcCceEEccCCC
Q psy15582 321 SNVICRKWLPQHDILA-HPKVKLFIM---QGGLQSS-QEAIHFGV----PMIGIPFFADQDTNVRKLESMDVARFLEYEN 391 (477)
Q Consensus 321 ~nv~i~~~vp~~~lL~-h~~~~~~I~---hgG~~s~-~Eal~~Gv----P~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~ 391 (477)
+-+.+.+.+|..++.. +..+|+++. .-|+|-+ .|+++++. |+|+--+.| | .+...-|+.+++.
T Consensus 362 pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----a--a~~l~~AllVNP~- 433 (487)
T TIGR02398 362 PLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----A--AVELKGALLTNPY- 433 (487)
T ss_pred cEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEecccc-----c--hhhcCCCEEECCC-
Confidence 3356778888776332 256888874 4588754 59999988 555444433 2 1444457888765
Q ss_pred CCHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q psy15582 392 ITAETLVTLMKSILYNE--TVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVL 440 (477)
Q Consensus 392 ~~~~~l~~al~~ll~~~--~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~ 440 (477)
+.++++++|.+.|+.+ +-+++++++.+.++. . .+..|.+..+
T Consensus 434 -d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~--~----d~~~W~~~fl 477 (487)
T TIGR02398 434 -DPVRMDETIYVALAMPKAEQQARMREMFDAVNY--Y----DVQRWADEFL 477 (487)
T ss_pred -CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh--C----CHHHHHHHHH
Confidence 8999999999999864 456677777776665 2 2355565554
No 154
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=89.72 E-value=2.3 Score=44.16 Aligned_cols=80 Identities=10% Similarity=0.087 Sum_probs=47.7
Q ss_pred hhhhhcCCCceEEEE----cCChhHHHHHHHhCCcEEeccCCc-chHHHHHHHHHc-CceEEccCCC-----CCHHHHHH
Q psy15582 331 QHDILAHPKVKLFIM----QGGLQSSQEAIHFGVPMIGIPFFA-DQDTNVRKLESM-DVARFLEYEN-----ITAETLVT 399 (477)
Q Consensus 331 ~~~lL~h~~~~~~I~----hgG~~s~~Eal~~GvP~i~~P~~~-dQ~~na~~~~~~-G~g~~l~~~~-----~~~~~l~~ 399 (477)
..+++ ..|++++. -|-..+..||+++|+|+|+....+ ..... ..+... ..|+.+...+ -+.++|.+
T Consensus 468 y~E~~--~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 468 YEEFV--RGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred hHHHh--hhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 44455 56888886 444578999999999999887643 11111 112112 2566654221 14567888
Q ss_pred HHHHHhcCHHHHHHH
Q psy15582 400 LMKSILYNETVYRKS 414 (477)
Q Consensus 400 al~~ll~~~~~~~~a 414 (477)
++.++++. +.++++
T Consensus 545 ~m~~~~~~-~~r~~~ 558 (590)
T cd03793 545 YMYEFCQL-SRRQRI 558 (590)
T ss_pred HHHHHhCC-cHHHHH
Confidence 88888743 334433
No 155
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=89.50 E-value=17 Score=40.04 Aligned_cols=142 Identities=8% Similarity=0.085 Sum_probs=84.1
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCce--EE-EEec-CCC-----CC-------C----CCCC-------
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHR--II-WKWE-EDI-----LP-------D----LPSN------- 322 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~--~l-~~~~-~~~-----~~-------~----~~~n------- 322 (477)
....++++.|.....+++ ...++++...+++.|+++ ++ +.+. +.. .+ . +...
T Consensus 277 ~~~~lIl~VgRLd~~KGi-~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~ 355 (797)
T PLN03063 277 AGRKVILGVDRLDMIKGI-PQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSV 355 (797)
T ss_pred CCCeEEEEecccccccCH-HHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCc
Confidence 345678899998876643 455666666666767653 33 2222 110 00 0 1111
Q ss_pred -e-EEeecCChhh---hhcCCCceEEEEc---CCh-hHHHHHHHhCCc---EEecc-CCcchHHHHHHHHHcC-ceEEcc
Q psy15582 323 -V-ICRKWLPQHD---ILAHPKVKLFIMQ---GGL-QSSQEAIHFGVP---MIGIP-FFADQDTNVRKLESMD-VARFLE 388 (477)
Q Consensus 323 -v-~i~~~vp~~~---lL~h~~~~~~I~h---gG~-~s~~Eal~~GvP---~i~~P-~~~dQ~~na~~~~~~G-~g~~l~ 388 (477)
+ ++..++|..+ ++ ..+|+|+.- -|+ .+..|++++|+| +++++ +.+. +.. .| -|+.++
T Consensus 356 pv~~l~~~v~~~el~aly--~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~----~~~---l~~~allVn 426 (797)
T PLN03063 356 PIHHLDCSVDFNYLCALY--AITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGA----GQS---LGAGALLVN 426 (797)
T ss_pred eeEEecCCCCHHHHHHHH--HhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCc----hhh---hcCCeEEEC
Confidence 1 2223555543 55 668999844 355 567899999999 44444 3331 111 24 578887
Q ss_pred CCCCCHHHHHHHHHHHhc-CHH-HHHHHHHHHHHhhc
Q psy15582 389 YENITAETLVTLMKSILY-NET-VYRKSQVYSKLSNT 423 (477)
Q Consensus 389 ~~~~~~~~l~~al~~ll~-~~~-~~~~a~~~~~~~~~ 423 (477)
+. +.++++++|.++|+ +++ .+++.+++.+....
T Consensus 427 P~--D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~ 461 (797)
T PLN03063 427 PW--NITEVSSAIKEALNMSDEERETRHRHNFQYVKT 461 (797)
T ss_pred CC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 66 89999999999998 544 44556666666655
No 156
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=89.33 E-value=1.5 Score=39.10 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=28.7
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE 71 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~ 71 (477)
+|||+ +.--|. +..-..+|+++|.+.||+|+++.|...+.
T Consensus 1 M~ILl-TNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 1 MRILL-TNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQS 40 (196)
T ss_dssp SEEEE-E-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTT
T ss_pred CeEEE-EcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 47877 554443 55667889999988889999999965544
No 157
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.85 E-value=3.1 Score=35.47 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=43.9
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEE-EEeecCCC-CCCCCeeEEEccc
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVT-MIGTDPLK-EPPVNYTDIDLSF 83 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~-~~~~~~~~-~~~~~~~~~~~~~ 83 (477)
.+.||.+ ...||-|-..-++.+++.|.++|..|- |+|++... ....||+.+.+..
T Consensus 4 ~~mki~I-TG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~t 60 (179)
T COG1618 4 MAMKIFI-TGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLAT 60 (179)
T ss_pred cceEEEE-eCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccC
Confidence 4678888 899999999999999999999999986 66664433 3456788877764
No 158
>KOG0853|consensus
Probab=87.47 E-value=0.37 Score=48.67 Aligned_cols=114 Identities=9% Similarity=0.137 Sum_probs=69.6
Q ss_pred cHHHHHHHHHHHhhCCC-ceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCceEEEEcC-----ChhHHHHHHHhCCc
Q psy15582 288 QEDKRKAIVDSFKQFPR-HRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQG-----GLQSSQEAIHFGVP 361 (477)
Q Consensus 288 ~~~~~~~i~~al~~~~~-~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hg-----G~~s~~Eal~~GvP 361 (477)
..+.++++.+-+++.+- -+++|-....... .+ ..++ .+|+.+...+ | -++.||+++|+|
T Consensus 327 n~~~~~el~~lie~~~l~g~~v~~~~s~~~~---~~---------yrl~--adt~~v~~qPa~E~FG-iv~IEAMa~glP 391 (495)
T KOG0853|consen 327 NVEYLKELLSLIEEYDLLGQFVWFLPSTTRV---AK---------YRLA--ADTKGVLYQPANEHFG-IVPIEAMACGLP 391 (495)
T ss_pred hHHHHHHHHHHHHHhCccCceEEEecCCchH---HH---------HHHH--HhcceEEecCCCCCcc-ceeHHHHhcCCC
Confidence 35667777777777651 1455543321100 00 1223 2244443322 3 468999999999
Q ss_pred EEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q psy15582 362 MIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKL 420 (477)
Q Consensus 362 ~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~~~~a~~~~~~ 420 (477)
++.+- +-.-+..++..--|..+++++-....+++++.++..|++++.++.+.+.+
T Consensus 392 vvAt~----~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~ 446 (495)
T KOG0853|consen 392 VVATN----NGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNGLK 446 (495)
T ss_pred EEEec----CCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99873 33344555555678888763323347999999999999998888665544
No 159
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=87.29 E-value=2.8 Score=39.49 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhCCCceEEEEecCCCC--------C---CCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHH
Q psy15582 289 EDKRKAIVDSFKQFPRHRIIWKWEEDIL--------P---DLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIH 357 (477)
Q Consensus 289 ~~~~~~i~~al~~~~~~~~l~~~~~~~~--------~---~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~ 357 (477)
....+.+.++++..|+++++++.-+... . .....+.+.+-++-.+++. +++.+||-.+ ++=.||+.
T Consensus 140 ~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~--~s~~VvtinS-tvGlEAll 216 (269)
T PF05159_consen 140 ADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLE--QSDAVVTINS-TVGLEALL 216 (269)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHH--hCCEEEEECC-HHHHHHHH
Confidence 4455556666666666888887765221 1 2233455566777788994 5999999976 57889999
Q ss_pred hCCcEEecc
Q psy15582 358 FGVPMIGIP 366 (477)
Q Consensus 358 ~GvP~i~~P 366 (477)
+|+|++++.
T Consensus 217 ~gkpVi~~G 225 (269)
T PF05159_consen 217 HGKPVIVFG 225 (269)
T ss_pred cCCceEEec
Confidence 999999874
No 160
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=86.86 E-value=3.8 Score=40.53 Aligned_cols=136 Identities=14% Similarity=0.047 Sum_probs=74.0
Q ss_pred HHHHHHHhhCCCceEEEEecCC---CC---CCCCCCeEEee-cCChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEEec
Q psy15582 293 KAIVDSFKQFPRHRIIWKWEED---IL---PDLPSNVICRK-WLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGI 365 (477)
Q Consensus 293 ~~i~~al~~~~~~~~l~~~~~~---~~---~~~~~nv~i~~-~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~ 365 (477)
..+. .+.+.+ +.+++..-+. .. ....+++.... ..+-.++|. .+|++||--+ ..+.|.+..++|+|..
T Consensus 220 ~~l~-~~~~~~-~~li~k~Hp~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~--~aDiLITDyS-Si~fD~~~l~KPiify 294 (369)
T PF04464_consen 220 EKLN-FLLKNN-YVLIIKPHPNMKKKFKDFKEDNSNIIFVSDNEDIYDLLA--AADILITDYS-SIIFDFLLLNKPIIFY 294 (369)
T ss_dssp HHHH-HHHTTT-EEEEE--SHHHHTT----TT-TTTEEE-TT-S-HHHHHH--T-SEEEESS--THHHHHGGGT--EEEE
T ss_pred HHHH-HHhCCC-cEEEEEeCchhhhchhhhhccCCcEEECCCCCCHHHHHH--hcCEEEEech-hHHHHHHHhCCCEEEE
Confidence 3344 444434 7777766431 11 23456777654 345667884 5999999986 4799999999999976
Q ss_pred cCCcchHHHH----HHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHH-HHHHHHHHHHHhhc-CCCChHHHHHHHHH
Q psy15582 366 PFFADQDTNV----RKLESMDVARFLEYENITAETLVTLMKSILYNET-VYRKSQVYSKLSNT-QMMSPKDTAVWWIE 437 (477)
Q Consensus 366 P~~~dQ~~na----~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~-~~~~a~~~~~~~~~-~~~~~~~~a~~~ie 437 (477)
..-.|+.... .-.++...|..+. +.++|.++|.++++++. ++++.++..+++.. .-.+..+++++.|.
T Consensus 295 ~~D~~~Y~~~rg~~~~~~~~~pg~~~~----~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 295 QPDLEEYEKERGFYFDYEEDLPGPIVY----NFEELIEAIENIIENPDEYKEKREKFRDKFFKYNDGNSSERIVNYIF 368 (369)
T ss_dssp -TTTTTTTTTSSBSS-TTTSSSS-EES----SHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHHHH
T ss_pred eccHHHHhhccCCCCchHhhCCCceeC----CHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHh
Confidence 5444443111 0012233343433 78999999999887654 45555666666533 12466677776664
No 161
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=86.40 E-value=4.5 Score=39.15 Aligned_cols=128 Identities=15% Similarity=0.145 Sum_probs=76.3
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCC-CCC------CCCCCeEEeec--CChh-hhhcCCCc
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEED-ILP------DLPSNVICRKW--LPQH-DILAHPKV 340 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~-~~~------~~~~nv~i~~~--vp~~-~lL~h~~~ 340 (477)
++.|.+..|+....+.+|.+.+.++++.+.+.+ +++++..++. +.+ ....++.+.+- +.+. .++ .++
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~-~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali--~~a 254 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSG-LRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVL--AGA 254 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCC-CeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHH--HhC
Confidence 455655556555556789999999999997755 8877654432 111 11223444433 3333 467 459
Q ss_pred eEEEEcCChhHHHHHHHhCCcEEec--cCCcch----HHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhc
Q psy15582 341 KLFIMQGGLQSSQEAIHFGVPMIGI--PFFADQ----DTNVRKLESMDVARFLEYENITAETLVTLMKSILY 406 (477)
Q Consensus 341 ~~~I~hgG~~s~~Eal~~GvP~i~~--P~~~dQ----~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~ 406 (477)
+++|+.-. |.++=|.+.|+|++++ |..... ..|...+. -++-+ ..+++++++.++++++|+
T Consensus 255 ~l~I~nDS-Gp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~--~~~~c--m~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 255 KAVVSVDT-GLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACR--SPGKS--MADLSAETVFQKLETLIS 321 (322)
T ss_pred CEEEecCC-cHHHHHHHhCCCEEEEECCCCcccccCCCCCceeec--CCCcc--cccCCHHHHHHHHHHHhh
Confidence 99999854 7899999999999966 321110 00111110 01112 236788998888888763
No 162
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=86.16 E-value=1.7 Score=37.77 Aligned_cols=28 Identities=29% Similarity=0.180 Sum_probs=20.6
Q ss_pred CCCCcHHHHHHHHHHH-HhCCCEEEEEee
Q psy15582 39 PSYSHQVPFIAIGKEL-VRRGHTVTMIGT 66 (477)
Q Consensus 39 ~~~GH~~~~l~la~~L-~~rGH~V~~~~~ 66 (477)
+++||..-++.|++.+ .++....+++.+
T Consensus 6 gsGGHt~eml~L~~~~~~~~~~~~~~ivt 34 (170)
T PF08660_consen 6 GSGGHTAEMLRLLKALDNDRYQPRTYIVT 34 (170)
T ss_pred cCcHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 5679999999999999 444444455444
No 163
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=86.06 E-value=24 Score=34.20 Aligned_cols=126 Identities=13% Similarity=0.255 Sum_probs=82.8
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhh-CC-CceEEE--EecCCC--C--------CC-CC-CCeEE-eecCChh-
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQ-FP-RHRIIW--KWEEDI--L--------PD-LP-SNVIC-RKWLPQH- 332 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~-~~-~~~~l~--~~~~~~--~--------~~-~~-~nv~i-~~~vp~~- 332 (477)
+..+.|-.|.+.... .+.++.+ +++++ .+ +.++++ ++++.. . .+ .+ +|+.+ .+++|-.
T Consensus 183 ~~~ltILvGNSgd~s---NnHieaL-~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~e 258 (360)
T PF07429_consen 183 KGKLTILVGNSGDPS---NNHIEAL-EALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDE 258 (360)
T ss_pred CCceEEEEcCCCCCC---ccHHHHH-HHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHH
Confidence 456667778877743 3333322 22222 22 377776 444321 0 01 23 57765 5688854
Q ss_pred --hhhcCCCceEEEE----cCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhc
Q psy15582 333 --DILAHPKVKLFIM----QGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILY 406 (477)
Q Consensus 333 --~lL~h~~~~~~I~----hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~ 406 (477)
.+| .+|++.|- .=|.|++.-.+..|+|+++- .+----+.+++.|+-+....++++...+.++=+++.+
T Consensus 259 Yl~lL--~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 259 YLALL--SRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKEQGIPVLFYGDELDEALVREAQRQLAN 332 (360)
T ss_pred HHHHH--HhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHhCCCeEEeccccCCHHHHHHHHHHHhh
Confidence 578 45887764 35889999999999999865 3344566677889888888788999999998887764
No 164
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=86.01 E-value=6.5 Score=37.49 Aligned_cols=97 Identities=13% Similarity=0.200 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHHh----CCcEEe
Q psy15582 289 EDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHF----GVPMIG 364 (477)
Q Consensus 289 ~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~----GvP~i~ 364 (477)
.+.++.+++.+++.+ +.+.+......... ..+. .. .+..++- ..++++|+-||-||+.+|+.. ++|++.
T Consensus 20 ~e~~~~i~~~L~~~g-~~v~v~~~~~~~~~-~~~~--~~-~~~~~~~--~~~d~vi~~GGDGt~l~~~~~~~~~~~pilG 92 (291)
T PRK02155 20 AEPLESLAAFLAKRG-FEVVFEADTARNIG-LTGY--PA-LTPEEIG--ARADLAVVLGGDGTMLGIGRQLAPYGVPLIG 92 (291)
T ss_pred HHHHHHHHHHHHHCC-CEEEEecchhhhcC-cccc--cc-cChhHhc--cCCCEEEEECCcHHHHHHHHHhcCCCCCEEE
Confidence 566788888888877 88776432111000 0000 00 1222222 358999999999999999874 678887
Q ss_pred ccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 365 IPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 365 ~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
+-.. .+|-. .+++++++.++|.++++++
T Consensus 93 In~G-------------~lGFL---~~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 93 INHG-------------RLGFI---TDIPLDDMQETLPPMLAGN 120 (291)
T ss_pred EcCC-------------Ccccc---ccCCHHHHHHHHHHHHcCC
Confidence 7420 12322 2457899999999998653
No 165
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=85.47 E-value=3.4 Score=39.01 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=61.6
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC-------CC-CCC-eEEeec--CCh-hhhhcCC
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP-------DL-PSN-VICRKW--LPQ-HDILAHP 338 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~-------~~-~~n-v~i~~~--vp~-~~lL~h~ 338 (477)
++.|.+..|+....+.++.+.+.++++.+.+.+ +++++..++++.+ .. ..+ +.+.+. +.+ ..++ .
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~-~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li--~ 197 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLARG-ARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALL--A 197 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHCC-CEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHH--H
Confidence 567777888877666788889999999888765 8888766654321 11 122 222332 223 3467 4
Q ss_pred CceEEEEcCChhHHHHHHHhCCcEEec
Q psy15582 339 KVKLFIMQGGLQSSQEAIHFGVPMIGI 365 (477)
Q Consensus 339 ~~~~~I~hgG~~s~~Eal~~GvP~i~~ 365 (477)
+++++|+.-. |.++=|.+.|+|++++
T Consensus 198 ~~~l~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 198 RADLVVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred hCCEEEeeCC-HHHHHHHHcCCCEEEE
Confidence 5999999854 6778888999999865
No 166
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=85.22 E-value=5.8 Score=34.40 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=20.4
Q ss_pred hCCCEEEEEeecCCCCCCCCeeEEEccc
Q psy15582 56 RRGHTVTMIGTDPLKEPPVNYTDIDLSF 83 (477)
Q Consensus 56 ~rGH~V~~~~~~~~~~~~~~~~~~~~~~ 83 (477)
++||+|++++........+|+..+.+..
T Consensus 1 q~gh~v~fl~~~~~~~~~~GV~~~~y~~ 28 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIPPGVRVVRYRP 28 (171)
T ss_pred CCCCEEEEEecCCCCCCCCCcEEEEeCC
Confidence 4799999999644444346888887765
No 167
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=84.90 E-value=2.4 Score=39.61 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=35.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCC
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPL 69 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~ 69 (477)
|++++.+-||.|......++|..++++|+.|.++..+..
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 577778889999999999999999999999999998654
No 168
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=83.95 E-value=3.3 Score=38.23 Aligned_cols=92 Identities=13% Similarity=0.178 Sum_probs=59.5
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC---------CCCCC-CeEEeecCC--h-hhhhc
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL---------PDLPS-NVICRKWLP--Q-HDILA 336 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~---------~~~~~-nv~i~~~vp--~-~~lL~ 336 (477)
+++.|.+..|+....+.++.+.+.++++.+.+.+ +++++.+++++. ...++ .+.+.+-.+ + ..++.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~-~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~ 182 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERG-YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALIS 182 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT--EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC-ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHh
Confidence 5788999999988877899999999999999888 888877776441 12222 344444333 3 34674
Q ss_pred CCCceEEEEcCChhHHHHHHHhCCcEEec
Q psy15582 337 HPKVKLFIMQGGLQSSQEAIHFGVPMIGI 365 (477)
Q Consensus 337 h~~~~~~I~hgG~~s~~Eal~~GvP~i~~ 365 (477)
.++++|+.-+ |.++=|.+.|+|+|++
T Consensus 183 --~a~~~I~~Dt-g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 183 --RADLVIGNDT-GPMHLAAALGTPTVAL 208 (247)
T ss_dssp --TSSEEEEESS-HHHHHHHHTT--EEEE
T ss_pred --cCCEEEecCC-hHHHHHHHHhCCEEEE
Confidence 4999999855 6799999999999977
No 169
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=83.85 E-value=7.3 Score=38.27 Aligned_cols=92 Identities=14% Similarity=0.176 Sum_probs=65.0
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC-----C----C--CCCeEEeecC--Ch-hhhh
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP-----D----L--PSNVICRKWL--PQ-HDIL 335 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~-----~----~--~~nv~i~~~v--p~-~~lL 335 (477)
.++.|.+..|+....+.+|.+.+.++++.+.+.+ +++++..++.+.+ . . +..+-+.+.. .+ ..++
T Consensus 182 ~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~-~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali 260 (352)
T PRK10422 182 TQNYVVIQPTARQIFKCWDNDKFSAVIDALQARG-YEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALI 260 (352)
T ss_pred CCCeEEEecCCCccccCCCHHHHHHHHHHHHHCC-CeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHH
Confidence 4678889999987777899999999999997766 8888776643211 1 1 1122334433 33 3467
Q ss_pred cCCCceEEEEcCChhHHHHHHHhCCcEEec
Q psy15582 336 AHPKVKLFIMQGGLQSSQEAIHFGVPMIGI 365 (477)
Q Consensus 336 ~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~ 365 (477)
.+++++|+.= .|-++=|.+.|+|+|.+
T Consensus 261 --~~a~l~v~nD-SGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 261 --DHAQLFIGVD-SAPAHIAAAVNTPLICL 287 (352)
T ss_pred --HhCCEEEecC-CHHHHHHHHcCCCEEEE
Confidence 4599999984 47789999999999855
No 170
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=83.65 E-value=5.9 Score=38.56 Aligned_cols=92 Identities=12% Similarity=0.157 Sum_probs=64.2
Q ss_pred CCceEEEecCCc-ccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC-------CCCCCeE-Eeec--CCh-hhhhcC
Q psy15582 270 KDGVIYFSLGTN-MQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP-------DLPSNVI-CRKW--LPQ-HDILAH 337 (477)
Q Consensus 270 ~~~~V~vs~Gs~-~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~-------~~~~nv~-i~~~--vp~-~~lL~h 337 (477)
+++.|.+..|+. ...+.++.+.+.++++.+.+.+ .++++..++++.+ ..++++. +.+- +.+ ..++
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~-~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali-- 249 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQG-YQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLI-- 249 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCC-CEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHH--
Confidence 478898998886 3566799999999999987756 8888776654321 1223322 3332 233 3467
Q ss_pred CCceEEEEcCChhHHHHHHHhCCcEEec
Q psy15582 338 PKVKLFIMQGGLQSSQEAIHFGVPMIGI 365 (477)
Q Consensus 338 ~~~~~~I~hgG~~s~~Eal~~GvP~i~~ 365 (477)
.+++++|+.= .|-++=|.+.|+|+|.+
T Consensus 250 ~~a~l~I~~D-SGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 250 ALAKAVVTND-SGLMHVAAALNRPLVAL 276 (334)
T ss_pred HhCCEEEeeC-CHHHHHHHHcCCCEEEE
Confidence 4599999874 47789999999999855
No 171
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.05 E-value=3.2 Score=38.87 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=40.4
Q ss_pred CceEEEEcCChhHHHHHHH------hCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 339 KVKLFIMQGGLQSSQEAIH------FGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 339 ~~~~~I~hgG~~s~~Eal~------~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
.++++|+-||-||++.|+. .++|++.+... .+|-. .+++++++.+++.++++++
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G-------------~lGFL---~~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHTG-------------HLGFY---TDWRPFEVDKLVIALAKDP 94 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeCC-------------Cceec---ccCCHHHHHHHHHHHHcCC
Confidence 4799999999999999986 47898877430 13333 2457888999999998653
No 172
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.77 E-value=13 Score=35.32 Aligned_cols=95 Identities=12% Similarity=0.156 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHH----hCCcEE
Q psy15582 288 QEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIH----FGVPMI 363 (477)
Q Consensus 288 ~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~----~GvP~i 363 (477)
..+.++.+++.+++.+ ..+++--.... .++ ...+ +...+. ..++++|+-||-||++.|+. .++|++
T Consensus 23 ~~~~~~~i~~~l~~~g-~~~~~~~~~~~--~~~----~~~~-~~~~~~--~~~Dlvi~iGGDGT~L~aa~~~~~~~~Pil 92 (287)
T PRK14077 23 LDKEILKLQKILSIYK-VEILLEKESAE--ILD----LPGY-GLDELF--KISDFLISLGGDGTLISLCRKAAEYDKFVL 92 (287)
T ss_pred HHHHHHHHHHHHHHCC-CEEEEecchhh--hhc----cccc-chhhcc--cCCCEEEEECCCHHHHHHHHHhcCCCCcEE
Confidence 3566777777777766 77666332110 000 0011 112233 34899999999999998866 378988
Q ss_pred eccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 364 GIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 364 ~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
.+-.. .+|-. .+++++++.+++.++++++
T Consensus 93 GIN~G-------------~lGFL---t~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 93 GIHAG-------------HLGFL---TDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred EEeCC-------------CcccC---CcCCHHHHHHHHHHHHcCC
Confidence 77421 12322 3457899999999998653
No 173
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.78 E-value=16 Score=35.11 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhCCCceEEEEecCCCCCCCCC-CeEE-----eecCCh-hhhhcCCCceEEEEcCChhHHHHHHHh---
Q psy15582 289 EDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPS-NVIC-----RKWLPQ-HDILAHPKVKLFIMQGGLQSSQEAIHF--- 358 (477)
Q Consensus 289 ~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~-nv~i-----~~~vp~-~~lL~h~~~~~~I~hgG~~s~~Eal~~--- 358 (477)
.+..+.+++.+.+.+ ..+++.-.... .... +... ...++. ..+. ..++++|+=||-||++.|...
T Consensus 20 ~~~~~~l~~~L~~~g-~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~D~vi~lGGDGT~L~aar~~~~ 94 (306)
T PRK03372 20 TEAARRVAKQLGDAG-IGVRVLDAEAV--DLGATHPAPDDFRAMEVVDADPDAA--DGCELVLVLGGDGTILRAAELARA 94 (306)
T ss_pred HHHHHHHHHHHHHCC-CEEEEeechhh--hhcccccccccccccccccchhhcc--cCCCEEEEEcCCHHHHHHHHHhcc
Confidence 566777777777777 77666432110 0010 0000 001111 1222 358999999999999999764
Q ss_pred -CCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 359 -GVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 359 -GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
++|++.+... .+|-.. +++++++.+++.+++++.
T Consensus 95 ~~~PilGIN~G-------------~lGFL~---~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 95 ADVPVLGVNLG-------------HVGFLA---EAEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCCcEEEEecC-------------CCceec---cCCHHHHHHHHHHHHcCC
Confidence 7899988541 134333 456889999999999653
No 174
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.76 E-value=39 Score=31.71 Aligned_cols=90 Identities=17% Similarity=0.232 Sum_probs=54.0
Q ss_pred ChhhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCChhh---hh
Q psy15582 259 PQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHD---IL 335 (477)
Q Consensus 259 ~~~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~---lL 335 (477)
|..++.|-+. ++|++++..|+... ..+++-+....++. |+....-+=.|...+|+||++ +|
T Consensus 192 ~s~ieq~r~a-~~p~llL~~e~~~~---------~~~~~~~~~~~~a~------Gdv~~~~~lrvvklPFvpqddyd~LL 255 (370)
T COG4394 192 PSWIEQLRKA-DKPILLLIPEGKTQ---------ANFAKYFDNNNNAD------GDVFQTAKLRVVKLPFVPQDDYDELL 255 (370)
T ss_pred HHHHHHHHhc-CCCEEEEcccchHH---------HHHHHHcCCCcccc------cchhcccceEEEEecCCcHhHHHHHH
Confidence 4444444444 78888876555332 23344433221111 222222234677789999864 66
Q ss_pred cCCCceEEEEcCChhHHHHHHHhCCcEE--eccC
Q psy15582 336 AHPKVKLFIMQGGLQSSQEAIHFGVPMI--GIPF 367 (477)
Q Consensus 336 ~h~~~~~~I~hgG~~s~~Eal~~GvP~i--~~P~ 367 (477)
-.||+-+-.| --|+.-|.-+|+|.+ +.|+
T Consensus 256 --~lcD~n~VRG-EDSFVRAq~agkPflWHIYpQ 286 (370)
T COG4394 256 --WLCDFNLVRG-EDSFVRAQLAGKPFLWHIYPQ 286 (370)
T ss_pred --Hhcccceeec-chHHHHHHHcCCCcEEEecCC
Confidence 3477777674 578999999999998 7776
No 175
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=79.06 E-value=2.3 Score=35.54 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHhCCCEEEEEeecCCCC----CCCCeeEEEcc
Q psy15582 43 HQVPFIAIGKELVRRGHTVTMIGTDPLKE----PPVNYTDIDLS 82 (477)
Q Consensus 43 H~~~~l~la~~L~~rGH~V~~~~~~~~~~----~~~~~~~~~~~ 82 (477)
--..+..++++|.++||+|+++++..... ...++.+..++
T Consensus 3 ~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~ 46 (160)
T PF13579_consen 3 IERYVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLP 46 (160)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE-
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEecc
Confidence 34567899999999999999999833222 13455555544
No 176
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.62 E-value=22 Score=33.97 Aligned_cols=98 Identities=18% Similarity=0.173 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHH----hCCcEE
Q psy15582 288 QEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIH----FGVPMI 363 (477)
Q Consensus 288 ~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~----~GvP~i 363 (477)
..+..+.+.+.+++.+ +.+.+.-... ..++.+- ....+...+- ..++++|+=||-||+.+++. .++|++
T Consensus 18 a~e~~~~i~~~L~~~g-iev~v~~~~~--~~~~~~~--~~~~~~~~~~--~~~d~vi~~GGDGt~l~~~~~~~~~~~Pvl 90 (295)
T PRK01231 18 VVETLRRLKDFLLDRG-LEVILDEETA--EVLPGHG--LQTVSRKLLG--EVCDLVIVVGGDGSLLGAARALARHNVPVL 90 (295)
T ss_pred HHHHHHHHHHHHHHCC-CEEEEecchh--hhcCccc--ccccchhhcc--cCCCEEEEEeCcHHHHHHHHHhcCCCCCEE
Confidence 3567777888787777 7766532211 0011110 0112222222 24899999999999999976 367888
Q ss_pred eccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 364 GIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 364 ~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
.+... .+|.. .+++++++.++|.+++++.
T Consensus 91 gin~G-------------~lGFl---~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 91 GINRG-------------RLGFL---TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred EEeCC-------------ccccc---ccCCHHHHHHHHHHHHcCC
Confidence 77541 13322 3557899999999999653
No 177
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=77.49 E-value=45 Score=28.55 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=50.7
Q ss_pred hhhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCC-CCC-CCCCeEEeec-CChhhhhc
Q psy15582 260 QNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI-LPD-LPSNVICRKW-LPQHDILA 336 (477)
Q Consensus 260 ~~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~-~~~-~~~nv~i~~~-vp~~~lL~ 336 (477)
.++-+++.+ ++..+++ |+. .....+..++..+.+ -+++=..+... ..+ ..+.....++ .+...++.
T Consensus 21 ~~lg~~La~--~g~~lv~-Gg~-------~GlM~a~a~ga~~~g-g~viGVlp~~l~~~~~~~~~~i~~~~~~~Rk~~m~ 89 (159)
T TIGR00725 21 YRLGKELAK--KGHILIN-GGR-------TGVMEAVSKGAREAG-GLVVGILPDEDFAGNPYLTIKVKTGMNFARNFILV 89 (159)
T ss_pred HHHHHHHHH--CCCEEEc-CCc-------hhHHHHHHHHHHHCC-CeEEEECChhhccCCCCceEEEECCCcchHHHHHH
Confidence 455566666 4456666 553 234455565655555 44443343321 111 1111222333 34455444
Q ss_pred CCCceEE-EEcCChhHH---HHHHHhCCcEEeccCC
Q psy15582 337 HPKVKLF-IMQGGLQSS---QEAIHFGVPMIGIPFF 368 (477)
Q Consensus 337 h~~~~~~-I~hgG~~s~---~Eal~~GvP~i~~P~~ 368 (477)
..+|+| +--||.||+ .|++.+++|+++++..
T Consensus 90 -~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 90 -RSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred -HHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 235555 456777875 5567899999988753
No 178
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=77.05 E-value=19 Score=35.22 Aligned_cols=92 Identities=17% Similarity=0.228 Sum_probs=65.0
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCC--CC-------CCCC-CCe-EEeec--CChh-hhh
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEED--IL-------PDLP-SNV-ICRKW--LPQH-DIL 335 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~--~~-------~~~~-~nv-~i~~~--vp~~-~lL 335 (477)
+++.|.+..|+....+.++.+.+.++++.+.+.+ +++++..+++ +. ...+ +++ -+.+. +.+. .++
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~-~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali 258 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHARG-YEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALI 258 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCC-CeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHH
Confidence 4678888889887777889999999999987766 8888776543 11 1111 122 23333 2343 467
Q ss_pred cCCCceEEEEcCChhHHHHHHHhCCcEEec
Q psy15582 336 AHPKVKLFIMQGGLQSSQEAIHFGVPMIGI 365 (477)
Q Consensus 336 ~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~ 365 (477)
.+++++|+. ..|.++=|.+.|+|+|.+
T Consensus 259 --~~a~l~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 259 --DHARLFIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred --HhCCEEEec-CCHHHHHHHHcCCCEEEE
Confidence 459999998 668899999999999965
No 179
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=76.77 E-value=12 Score=36.62 Aligned_cols=92 Identities=9% Similarity=0.037 Sum_probs=62.8
Q ss_pred CCceEEEecCCcc-cCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC-------CCCC----C-eEEeecC--Ch-hh
Q psy15582 270 KDGVIYFSLGTNM-QSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP-------DLPS----N-VICRKWL--PQ-HD 333 (477)
Q Consensus 270 ~~~~V~vs~Gs~~-~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~-------~~~~----n-v~i~~~v--p~-~~ 333 (477)
+++.|.+..|+.. ..+.+|.+.+.++++.+.+.+ +++++..++++.+ ..++ + +-+.+-. .+ ..
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~-~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~a 257 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEG-YQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVI 257 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCC-CeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHH
Confidence 4678999999863 556789999999999887655 8877765543321 1111 1 2233332 33 24
Q ss_pred hhcCCCceEEEEcCChhHHHHHHHhCCcEEec
Q psy15582 334 ILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGI 365 (477)
Q Consensus 334 lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~ 365 (477)
++ .+++++|+. ..|-++=|.+.|+|++.+
T Consensus 258 li--~~a~l~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 258 LI--AACKAIVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred HH--HhCCEEEec-CChHHHHHHHhCCCEEEE
Confidence 77 459999987 457899999999999855
No 180
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.63 E-value=22 Score=33.96 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHH----hCCcEEe
Q psy15582 289 EDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIH----FGVPMIG 364 (477)
Q Consensus 289 ~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~----~GvP~i~ 364 (477)
.+.++.+.+.+++.+ +.+.+--........ .+ ....+...+. ..++++|+=||-||+..|+. .++|++.
T Consensus 20 ~~~~~~i~~~l~~~g-~~v~~~~~~~~~~~~-~~---~~~~~~~~~~--~~~d~vi~lGGDGT~L~aa~~~~~~~~Pilg 92 (292)
T PRK03378 20 LTTHEMLYHWLTSKG-YEVIVEQQIAHELQL-KN---VKTGTLAEIG--QQADLAIVVGGDGNMLGAARVLARYDIKVIG 92 (292)
T ss_pred HHHHHHHHHHHHHCC-CEEEEecchhhhcCc-cc---ccccchhhcC--CCCCEEEEECCcHHHHHHHHHhcCCCCeEEE
Confidence 556677777777767 776653211100000 00 0011112222 35899999999999999985 3678887
Q ss_pred ccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 365 IPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 365 ~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
+-.. .+|.. .+++++++.+++++++++.
T Consensus 93 in~G-------------~lGFl---~~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 93 INRG-------------NLGFL---TDLDPDNALQQLSDVLEGH 120 (292)
T ss_pred EECC-------------CCCcc---cccCHHHHHHHHHHHHcCC
Confidence 7431 12332 2456889999999998653
No 181
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=76.35 E-value=28 Score=30.45 Aligned_cols=112 Identities=15% Similarity=0.123 Sum_probs=55.0
Q ss_pred hhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCC----CC-CCCCCCeEEeecCC-hhhh
Q psy15582 261 NLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEED----IL-PDLPSNVICRKWLP-QHDI 334 (477)
Q Consensus 261 ~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~----~~-~~~~~nv~i~~~vp-~~~l 334 (477)
++-+++.+ +...+|+-|+. .....+++++..+.+ -+++=..... +. ....+..++.+.+. ...+
T Consensus 23 ~lG~~la~--~g~~lV~GGg~-------~GlM~a~a~ga~~~g-G~viGi~p~~l~~~~~~~~~~~~~i~~~~~~~Rk~~ 92 (178)
T TIGR00730 23 ELGAYLAG--QGWGLVYGGGR-------VGLMGAIADAAMENG-GTAVGVNPSGLFSGEVVHQNLTELIEVNGMHERKAM 92 (178)
T ss_pred HHHHHHHH--CCCEEEECCCh-------HhHHHHHHHHHHhcC-CeEEEecchhhhhhhccCCCCCceEEECCHHHHHHH
Confidence 45556655 45555655541 334455666665555 4443222211 11 11122333444443 3444
Q ss_pred hcCCCceEE-EEcCChhHHHHHHHh---------CCcEEecc---CCcchHHHHHHHHHcCc
Q psy15582 335 LAHPKVKLF-IMQGGLQSSQEAIHF---------GVPMIGIP---FFADQDTNVRKLESMDV 383 (477)
Q Consensus 335 L~h~~~~~~-I~hgG~~s~~Eal~~---------GvP~i~~P---~~~dQ~~na~~~~~~G~ 383 (477)
+.. .+|+| +--||.||+-|.+.. .+|++++- ++.+-....+.+.+.|.
T Consensus 93 m~~-~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gf 153 (178)
T TIGR00730 93 MAE-LADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGF 153 (178)
T ss_pred HHH-hCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCC
Confidence 443 35555 466788998877543 89988763 22222223345555554
No 182
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.29 E-value=5.3 Score=38.29 Aligned_cols=101 Identities=12% Similarity=0.173 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhCCCceEEEEecCCCCCCCCC--CeEEeecC---ChhhhhcCCCceEEEEcCChhHHHHHHHh----C
Q psy15582 289 EDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPS--NVICRKWL---PQHDILAHPKVKLFIMQGGLQSSQEAIHF----G 359 (477)
Q Consensus 289 ~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~--nv~i~~~v---p~~~lL~h~~~~~~I~hgG~~s~~Eal~~----G 359 (477)
.+..+.+.+.+.+.+ +.+++.-.....-..+. +.....=. +...+. ..++++|+=||-||++.|+.. +
T Consensus 16 ~~~~~~l~~~L~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Dlvi~iGGDGTlL~aar~~~~~~ 92 (305)
T PRK02649 16 VRTAEELQDKLEAAG-WEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFD--SSMKFAIVLGGDGTVLSAARQLAPCG 92 (305)
T ss_pred HHHHHHHHHHHHHCC-CEEEEecchhhhcCccccccccccccccccChhhcc--cCcCEEEEEeCcHHHHHHHHHhcCCC
Confidence 566777777787777 77776432111001110 00000001 112222 358999999999999999874 7
Q ss_pred CcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 360 VPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 360 vP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
+|++.+-.. .+|-. .+++++++.+++.++++++
T Consensus 93 iPilGIN~G-------------~lGFL---t~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 93 IPLLTINTG-------------HLGFL---TEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred CcEEEEeCC-------------CCccc---ccCCHHHHHHHHHHHHcCC
Confidence 898887420 12322 3457889999999999764
No 183
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=75.98 E-value=3.9 Score=34.84 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=26.6
Q ss_pred CCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCCC
Q psy15582 39 PSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEPP 73 (477)
Q Consensus 39 ~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~~ 73 (477)
..+|=-.-+..++++|+++||+|+++++.......
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~ 44 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIE 44 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-S
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccch
Confidence 35688888999999999999999999885444433
No 184
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=75.85 E-value=5 Score=35.37 Aligned_cols=44 Identities=27% Similarity=0.289 Sum_probs=25.0
Q ss_pred CCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCCCCCeeEEEcc
Q psy15582 37 PTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEPPVNYTDIDLS 82 (477)
Q Consensus 37 ~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~ 82 (477)
+..+.|. ...+||+++..||++|+++........+.++..+.+.
T Consensus 24 tN~SSG~--~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~ 67 (185)
T PF04127_consen 24 TNRSSGK--MGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVE 67 (185)
T ss_dssp EES--SH--HHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-S
T ss_pred cCCCcCH--HHHHHHHHHHHCCCEEEEEecCccccccccceEEEec
Confidence 3444454 3578999999999999999996432334455555544
No 185
>PRK09620 hypothetical protein; Provisional
Probab=74.32 E-value=22 Score=32.51 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCEEEEEeec
Q psy15582 47 FIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 47 ~l~la~~L~~rGH~V~~~~~~ 67 (477)
...||++|.++|++|+++...
T Consensus 32 Gs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 32 GRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHHCCCeEEEEeCC
Confidence 478999999999999998763
No 186
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=74.23 E-value=62 Score=31.00 Aligned_cols=123 Identities=13% Similarity=0.156 Sum_probs=74.6
Q ss_pred ceEEEecCCcccCCcccHHHHHHHHHHHhh-CC-CceEEEEecC--CCC-----------CCCC-CCeEEe-ecCC---h
Q psy15582 272 GVIYFSLGTNMQSASLQEDKRKAIVDSFKQ-FP-RHRIIWKWEE--DIL-----------PDLP-SNVICR-KWLP---Q 331 (477)
Q Consensus 272 ~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~-~~-~~~~l~~~~~--~~~-----------~~~~-~nv~i~-~~vp---~ 331 (477)
..+-|-+|.+.... .+.++ +++++.+ .+ +.++++-.+= ... +-.+ +++.+. +++| +
T Consensus 145 ~~~tIlvGNSgd~S---N~Hie-~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eY 220 (322)
T PRK02797 145 GKMTILVGNSGDRS---NRHIE-ALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDY 220 (322)
T ss_pred CceEEEEeCCCCCc---ccHHH-HHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHH
Confidence 34666678877743 33433 3333322 22 3677764442 110 0123 677654 5666 4
Q ss_pred hhhhcCCCceEEEEc----CChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHH
Q psy15582 332 HDILAHPKVKLFIMQ----GGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSI 404 (477)
Q Consensus 332 ~~lL~h~~~~~~I~h----gG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~l 404 (477)
..+|. +||+.|-. =|.||+.-.+..|+|+++-.. -+.+ +-+.+.|+-+-.+.++++...+.++=+++
T Consensus 221 l~lL~--~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~---n~fw-qdl~e~gv~Vlf~~d~L~~~~v~e~~rql 291 (322)
T PRK02797 221 LALLR--QCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRD---NPFW-QDLTEQGLPVLFTGDDLDEDIVREAQRQL 291 (322)
T ss_pred HHHHH--hCCEEEEeechhhHHhHHHHHHHCCCcEEEecC---CchH-HHHHhCCCeEEecCCcccHHHHHHHHHHH
Confidence 56884 47776633 488999999999999997632 2222 33677888887777788887777664443
No 187
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=73.92 E-value=1.1e+02 Score=31.52 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=83.1
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCC-CC--------CCCCCeEEeecCCh-hhhhcCCCc
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI-LP--------DLPSNVICRKWLPQ-HDILAHPKV 340 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~-~~--------~~~~nv~i~~~vp~-~~lL~h~~~ 340 (477)
+++++..-|.....+ +-++....+..+-+.+ +++++-..++. .+ ..+.++.+.-+.+. ...+.+..+
T Consensus 293 ~~pl~~~vsRl~~QK--G~dl~~~~i~~~l~~~-~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~aga 369 (487)
T COG0297 293 PGPLFGFVSRLTAQK--GLDLLLEAIDELLEQG-WQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGA 369 (487)
T ss_pred CCcEEEEeecccccc--chhHHHHHHHHHHHhC-ceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcC
Confidence 445666666666643 4566665666655556 77777665532 11 34667777766654 344444778
Q ss_pred eEEE-----EcCChhHHHHHHHhCCcEEeccCCc------chHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHh
Q psy15582 341 KLFI-----MQGGLQSSQEAIHFGVPMIGIPFFA------DQDTNVRKLESMDVARFLEYENITAETLVTLMKSIL 405 (477)
Q Consensus 341 ~~~I-----~hgG~~s~~Eal~~GvP~i~~P~~~------dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll 405 (477)
|+++ --||. |=++||++|.+-|+.+..+ |-..++ .+..|.|..+... +++.+..++++.+
T Consensus 370 D~~lmPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~gtGf~f~~~--~~~~l~~al~rA~ 440 (487)
T COG0297 370 DVILMPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGVGTGFLFLQT--NPDHLANALRRAL 440 (487)
T ss_pred CEEEeCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccCceeEEEEecC--CHHHHHHHHHHHH
Confidence 8887 35665 5779999999888888644 222222 5667888888754 9999999999876
No 188
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.57 E-value=8.4 Score=36.72 Aligned_cols=99 Identities=10% Similarity=0.176 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhhCCCceEEEEecCC-CCCC---CCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHH----hCC
Q psy15582 289 EDKRKAIVDSFKQFPRHRIIWKWEED-ILPD---LPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIH----FGV 360 (477)
Q Consensus 289 ~~~~~~i~~al~~~~~~~~l~~~~~~-~~~~---~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~----~Gv 360 (477)
.+.++.+.+.+++.+ +.+++--... .... ..++. ..+.+...+. ..++++|+=||-||++.|+. .++
T Consensus 15 ~~~~~~i~~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~dlvi~lGGDGT~L~aa~~~~~~~~ 89 (292)
T PRK01911 15 SPYIQELFDELEERG-AEVLIEEKFLDFLKQDLKFHPSY--DTFSDNEELD--GSADMVISIGGDGTFLRTATYVGNSNI 89 (292)
T ss_pred HHHHHHHHHHHHHCC-CEEEEecchhhhhcccccccccc--ccccchhhcc--cCCCEEEEECCcHHHHHHHHHhcCCCC
Confidence 456777777777777 7776632211 0000 00000 0010222333 34899999999999999987 378
Q ss_pred cEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 361 PMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 361 P~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
|++.+-... +|-. .+++++++.+++++++++.
T Consensus 90 PilGIN~G~-------------lGFL---t~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 90 PILGINTGR-------------LGFL---ATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CEEEEecCC-------------CCcc---cccCHHHHHHHHHHHHcCC
Confidence 988774311 3322 3457899999999999653
No 189
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=72.30 E-value=7.7 Score=39.54 Aligned_cols=54 Identities=24% Similarity=0.226 Sum_probs=37.7
Q ss_pred ccccEEEEcCCCCCCcHHH------------HHHHHHHHHhCCCEEEEEeecCCCCCCCCeeEEEcc
Q psy15582 28 ESANVLIICPTPSYSHQVP------------FIAIGKELVRRGHTVTMIGTDPLKEPPVNYTDIDLS 82 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~------------~l~la~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~ 82 (477)
...|||| ...|+.-.+.| ..+||+++..||++||+++.......+.++.++.+.
T Consensus 255 ~gkkvLI-TaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~~p~~v~~i~V~ 320 (475)
T PRK13982 255 AGRRVLI-TAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLADPQGVKVIHVE 320 (475)
T ss_pred CCCEEEE-ecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCCCCCCceEEEec
Confidence 5668888 66666555544 579999999999999999974433334555555444
No 190
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.27 E-value=8 Score=36.92 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhCCCceEEEEecCCC---CCCC-CCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHH----hCC
Q psy15582 289 EDKRKAIVDSFKQFPRHRIIWKWEEDI---LPDL-PSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIH----FGV 360 (477)
Q Consensus 289 ~~~~~~i~~al~~~~~~~~l~~~~~~~---~~~~-~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~----~Gv 360 (477)
.+.++.+.+.+.+.+ ..+++--.... .... ..+. ...+...+. ..+|++|+=||-||++.|++ .++
T Consensus 20 ~~~~~~l~~~L~~~g-~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~D~vi~lGGDGT~L~aa~~~~~~~~ 93 (296)
T PRK04539 20 QDTAHTLITFLKQHG-FTVYLDEVGIKEGCIYTQDTVGC---HIVNKTELG--QYCDLVAVLGGDGTFLSVAREIAPRAV 93 (296)
T ss_pred HHHHHHHHHHHHHCC-CEEEEecccccccchhccccccc---cccchhhcC--cCCCEEEEECCcHHHHHHHHHhcccCC
Confidence 566777777787777 77766321100 0000 0111 111222333 24899999999999999975 378
Q ss_pred cEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 361 PMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 361 P~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
|++.+-.. .+|-.. +++++++.+++.+++++.
T Consensus 94 PilGIN~G-------------~lGFL~---~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 94 PIIGINQG-------------HLGFLT---QIPREYMTDKLLPVLEGK 125 (296)
T ss_pred CEEEEecC-------------CCeEee---ccCHHHHHHHHHHHHcCC
Confidence 98887431 134333 457899999999999653
No 191
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=71.16 E-value=37 Score=30.05 Aligned_cols=39 Identities=10% Similarity=0.131 Sum_probs=33.1
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
..+.|.+ ++..|.|-...++.+|-..+..|+.|.++...
T Consensus 21 ~~g~v~v-~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFl 59 (191)
T PRK05986 21 EKGLLIV-HTGNGKGKSTAAFGMALRAVGHGKKVGVVQFI 59 (191)
T ss_pred cCCeEEE-ECCCCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 3456777 67788999999999999999999999998883
No 192
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=70.82 E-value=1.4e+02 Score=33.50 Aligned_cols=143 Identities=11% Similarity=0.065 Sum_probs=81.1
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCce--EEEE-ecC---C---CCCC----C----------------C
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHR--IIWK-WEE---D---ILPD----L----------------P 320 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~--~l~~-~~~---~---~~~~----~----------------~ 320 (477)
....|+++.+.....+++ ...++++-..|++.|+++ +++. +.. . ..+. + .
T Consensus 361 ~g~kiIlgVDRLD~~KGI-~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~ 439 (934)
T PLN03064 361 AGRKVMLGVDRLDMIKGI-PQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAV 439 (934)
T ss_pred CCceEEEEeeccccccCH-HHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcc
Confidence 455688999999886654 444566666677777654 4432 211 0 1000 0 0
Q ss_pred CCeEEeecCChhh---hhcCCCceEEEE---cCChhH-HHHHHHhCC---cEEeccCCcchHHHHHHHHHcC-ceEEccC
Q psy15582 321 SNVICRKWLPQHD---ILAHPKVKLFIM---QGGLQS-SQEAIHFGV---PMIGIPFFADQDTNVRKLESMD-VARFLEY 389 (477)
Q Consensus 321 ~nv~i~~~vp~~~---lL~h~~~~~~I~---hgG~~s-~~Eal~~Gv---P~i~~P~~~dQ~~na~~~~~~G-~g~~l~~ 389 (477)
+=..+...+|..+ ++ ..+++++- .-|+|. ..|+++++. -+++++-+. .-|. ..| -|+.+++
T Consensus 440 Pv~~~~~~l~~eeL~AlY--~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa---Gaa~---~L~~~AllVNP 511 (934)
T PLN03064 440 PIHHLDRSLDFHALCALY--AVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA---GAAQ---SLGAGAILVNP 511 (934)
T ss_pred eEEEeccCCCHHHHHHHH--HhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCC---chHH---HhCCceEEECC
Confidence 0112333466654 44 56888874 447654 569999955 233333221 1122 224 4677776
Q ss_pred CCCCHHHHHHHHHHHhc-CHH-HHHHHHHHHHHhhc
Q psy15582 390 ENITAETLVTLMKSILY-NET-VYRKSQVYSKLSNT 423 (477)
Q Consensus 390 ~~~~~~~l~~al~~ll~-~~~-~~~~a~~~~~~~~~ 423 (477)
. +.++++++|.+.|+ +++ .+++.+++.+....
T Consensus 512 ~--D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~ 545 (934)
T PLN03064 512 W--NITEVAASIAQALNMPEEEREKRHRHNFMHVTT 545 (934)
T ss_pred C--CHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc
Confidence 5 88999999999997 544 44455555555554
No 193
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=69.69 E-value=18 Score=33.40 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=29.0
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCC
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEP 72 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~ 72 (477)
+|||+ +.--.=|.--..+|+++|. .+++|+++.|+..+.-
T Consensus 1 mrILl--TNDDGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg 40 (252)
T COG0496 1 MRILL--TNDDGIHAPGIRALARALR-EGADVTVVAPDREQSG 40 (252)
T ss_pred CeEEE--ecCCccCCHHHHHHHHHHh-hCCCEEEEccCCCCcc
Confidence 37777 3333356666778899998 9999999999665543
No 194
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.56 E-value=9.8 Score=35.62 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=40.0
Q ss_pred CceEEEEcCChhHHHHHHHh-----CCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 339 KVKLFIMQGGLQSSQEAIHF-----GVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 339 ~~~~~I~hgG~~s~~Eal~~-----GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
.++++|+=||-||++.|+.. .+|++.+...+ .+|-. .+++++++.+++.++++++
T Consensus 39 ~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G------------~lGFL---~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 39 NANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD------------QLGFY---CDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred CccEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC------------CCeEc---ccCCHHHHHHHHHHHHcCC
Confidence 37899999999999999874 56766664311 23333 3557899999999998653
No 195
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=68.75 E-value=6.9 Score=31.51 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=30.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
||++ .+.++..|.....-++..|.++|++|.++..
T Consensus 1 ~vl~-~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~ 35 (119)
T cd02067 1 KVVI-ATVGGDGHDIGKNIVARALRDAGFEVIDLGV 35 (119)
T ss_pred CEEE-EeeCCchhhHHHHHHHHHHHHCCCEEEECCC
Confidence 5666 7788999999999999999999999976654
No 196
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.51 E-value=11 Score=35.40 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=40.3
Q ss_pred CceEEEEcCChhHHHHHHH-hCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 339 KVKLFIMQGGLQSSQEAIH-FGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 339 ~~~~~I~hgG~~s~~Eal~-~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
.++++|+=||-||+..|+. ...|++.+-.. .+|-. .+++++++.+++++++++.
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~G-------------~lGFL---~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINMG-------------GLGFL---TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEECC-------------CCccC---cccCHHHHHHHHHHHHcCC
Confidence 3899999999999999988 45687766320 12322 2457899999999999753
No 197
>PRK05920 aromatic acid decarboxylase; Validated
Probab=68.15 E-value=6.2 Score=35.35 Aligned_cols=38 Identities=8% Similarity=0.070 Sum_probs=30.4
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
.++||++- ..|.....-...+.+.|.+.||+|+++.+.
T Consensus 2 ~~krIllg--ITGsiaa~ka~~lvr~L~~~g~~V~vi~T~ 39 (204)
T PRK05920 2 KMKRIVLA--ITGASGAIYGVRLLECLLAADYEVHLVISK 39 (204)
T ss_pred CCCEEEEE--EeCHHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 46778773 335566789999999999999999998883
No 198
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.76 E-value=14 Score=34.39 Aligned_cols=84 Identities=14% Similarity=0.184 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHH-hCCcEEecc
Q psy15582 288 QEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIH-FGVPMIGIP 366 (477)
Q Consensus 288 ~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~-~GvP~i~~P 366 (477)
..+..+.+.+.+.+.+ ..+.|..... +. - ..++++|+=||-||+..|+. .++|++.+-
T Consensus 11 ~~~~~~~~~~~l~~~~-~~~~~~~~~~---------------~~---~--~~~d~vi~iGGDGT~L~a~~~~~~Pilgin 69 (256)
T PRK14075 11 KEKEAKFLKEKISKEH-EVVEFCEASA---------------SG---K--VTADLIIVVGGDGTVLKAAKKVGTPLVGFK 69 (256)
T ss_pred HHHHHHHHHHHHHHcC-CeeEeecccc---------------cc---c--CCCCEEEEECCcHHHHHHHHHcCCCEEEEe
Confidence 4566777777777766 6666543211 11 1 34799999999999999987 678888774
Q ss_pred CCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 367 FFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 367 ~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
.. .+|... +++++++.+++.++++..
T Consensus 70 ~G-------------~lGfl~---~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 70 AG-------------RLGFLS---SYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CC-------------CCcccc---ccCHHHHHHHHHHHHcCC
Confidence 21 133222 457888999999988653
No 199
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.58 E-value=9.1 Score=36.03 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=39.9
Q ss_pred CceEEEEcCChhHHHHHHH----hCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCHH
Q psy15582 339 KVKLFIMQGGLQSSQEAIH----FGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNET 409 (477)
Q Consensus 339 ~~~~~I~hgG~~s~~Eal~----~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~ 409 (477)
.++++|+=||-||++.|+. .++|++.+-.. .+|-.. +++++++.+++.+++++.+
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G-------------~lGFL~---~~~~~~~~~~l~~~~~~g~ 100 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLAKYDIPLIGINRG-------------NLGFLT---DIDPKNAYEQLEACLERGE 100 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC-------------CCcccc---cCCHHHHHHHHHHHHhcCC
Confidence 4899999999999998866 36898877431 144333 3578888888988887333
No 200
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=66.57 E-value=18 Score=33.75 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=32.9
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
...++++ ++.+|.|-..-+.+||.+|.++|+.|+|++.
T Consensus 104 ~~~nl~l-~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 104 RGENLVL-LGPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred cCCcEEE-ECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 5556666 8889999999999999999989999999887
No 201
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=66.44 E-value=10 Score=36.43 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=35.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK 70 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~ 70 (477)
|+++|.+-||-|-..-..++|-.++++|++|.+++.++..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 7888889999999999999999999999999999996543
No 202
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=66.40 E-value=7.1 Score=34.67 Aligned_cols=37 Identities=16% Similarity=0.062 Sum_probs=29.0
Q ss_pred cccEEEEcCCCCCCcHHH-HHHHHHHHHhCCCEEEEEeec
Q psy15582 29 SANVLIICPTPSYSHQVP-FIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~-~l~la~~L~~rGH~V~~~~~~ 67 (477)
.+||++ ...|.+.... ...+++.|.++||+|+++.+.
T Consensus 5 ~k~Ill--gVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 5 GKRIGF--GLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCEEEE--EEcCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 457766 3345567777 699999999999999988874
No 203
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=64.60 E-value=13 Score=32.56 Aligned_cols=46 Identities=28% Similarity=0.255 Sum_probs=30.4
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCCC-CCeeEEE
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEPP-VNYTDID 80 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~~-~~~~~~~ 80 (477)
+||-++ + ..|++ ...|+++..+|||+||-++..+.+... ++.....
T Consensus 1 mKIaiI-g--AsG~~--Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q 47 (211)
T COG2910 1 MKIAII-G--ASGKA--GSRILKEALKRGHEVTAIVRNASKLAARQGVTILQ 47 (211)
T ss_pred CeEEEE-e--cCchh--HHHHHHHHHhCCCeeEEEEeChHhccccccceeec
Confidence 366552 2 33443 457899999999999999986655543 5554443
No 204
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=64.22 E-value=7.8 Score=32.67 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=30.7
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhC-CCEEEE
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRR-GHTVTM 63 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~r-GH~V~~ 63 (477)
+||++..+.-+..|....+++|+.|.+. |.+|.+
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 4788888888999999999999999999 999874
No 205
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=63.13 E-value=8.5 Score=34.33 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=30.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
=|++ .+.||.|-...+..||++|.+++|+|.-.+.
T Consensus 3 LiIl-TGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 3 LIIL-TGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred eEEE-ecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 3444 8999999999999999999999999876665
No 206
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=63.01 E-value=10 Score=31.17 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=26.9
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+||++.++ |.++..-...+.++|.++|++|.++.+
T Consensus 1 k~i~l~vt--Gs~~~~~~~~~l~~L~~~g~~v~vv~S 35 (129)
T PF02441_consen 1 KRILLGVT--GSIAAYKAPDLLRRLKRAGWEVRVVLS 35 (129)
T ss_dssp -EEEEEE---SSGGGGGHHHHHHHHHTTTSEEEEEES
T ss_pred CEEEEEEE--CHHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 47777444 346666699999999999999998877
No 207
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=62.41 E-value=96 Score=26.25 Aligned_cols=137 Identities=11% Similarity=0.124 Sum_probs=68.9
Q ss_pred ceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCceEEEEcCChhH
Q psy15582 272 GVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQS 351 (477)
Q Consensus 272 ~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s 351 (477)
|.|.|-+||... ....+++.+.|++++ ..+-+.+.+... .|+. +.+++ .-+.+..+++||.=.|...
T Consensus 1 p~V~Ii~gs~SD-----~~~~~~a~~~L~~~g-i~~~~~V~saHR--~p~~--l~~~~---~~~~~~~~~viIa~AG~~a 67 (150)
T PF00731_consen 1 PKVAIIMGSTSD-----LPIAEEAAKTLEEFG-IPYEVRVASAHR--TPER--LLEFV---KEYEARGADVIIAVAGMSA 67 (150)
T ss_dssp -EEEEEESSGGG-----HHHHHHHHHHHHHTT--EEEEEE--TTT--SHHH--HHHHH---HHTTTTTESEEEEEEESS-
T ss_pred CeEEEEeCCHHH-----HHHHHHHHHHHHHcC-CCEEEEEEeccC--CHHH--HHHHH---HHhccCCCEEEEEECCCcc
Confidence 567788888766 677888899999887 554443332110 0000 01111 1122235788988777633
Q ss_pred HHHH---HHhCCcEEeccCCcchHHHH----HHHHH-cCceEEcc-CCCCCHHHHHHHHHHHh--cCHHHHHHHHHHHHH
Q psy15582 352 SQEA---IHFGVPMIGIPFFADQDTNV----RKLES-MDVARFLE-YENITAETLVTLMKSIL--YNETVYRKSQVYSKL 420 (477)
Q Consensus 352 ~~Ea---l~~GvP~i~~P~~~dQ~~na----~~~~~-~G~g~~l~-~~~~~~~~l~~al~~ll--~~~~~~~~a~~~~~~ 420 (477)
-+-. -..-+|+|.+|....+.... ..++- .|+++..- .+ +...-.-...++| .|++++++.+...++
T Consensus 68 ~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~--~~~nAA~~A~~ILa~~d~~l~~kl~~~~~~ 145 (150)
T PF00731_consen 68 ALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGIN--NGFNAALLAARILALKDPELREKLRAYREK 145 (150)
T ss_dssp -HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SST--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cchhhheeccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEcc--CchHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2222 23479999999876644222 22222 36654322 11 3344333344444 478888888887776
Q ss_pred hhc
Q psy15582 421 SNT 423 (477)
Q Consensus 421 ~~~ 423 (477)
.++
T Consensus 146 ~~~ 148 (150)
T PF00731_consen 146 MKE 148 (150)
T ss_dssp HHH
T ss_pred HHc
Confidence 553
No 208
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=62.36 E-value=12 Score=31.63 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=34.9
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC-CCCCeeEEEc
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE-PPVNYTDIDL 81 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~-~~~~~~~~~~ 81 (477)
+|+|++++.-.+.--.-.-.||..|.++||+|++.-...... ...+++-+-+
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVI 53 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVI 53 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEE
Confidence 378887776555555667788999999999999877633222 2344444433
No 209
>KOG0780|consensus
Probab=62.05 E-value=14 Score=36.14 Aligned_cols=43 Identities=9% Similarity=0.237 Sum_probs=37.0
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE 71 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~ 71 (477)
.+.|+.|+..-|.|-..-+-.+|..+.++|..|-+++.+.++.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA 142 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc
Confidence 3346565899999999999999999999999999999976664
No 210
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=61.66 E-value=27 Score=30.78 Aligned_cols=53 Identities=15% Similarity=0.069 Sum_probs=34.2
Q ss_pred cccEEEEcCC---C--CCCcHHHHHHHHHHHHhCCCEEEEEeecCCC----CCCCCeeEEEcc
Q psy15582 29 SANVLIICPT---P--SYSHQVPFIAIGKELVRRGHTVTMIGTDPLK----EPPVNYTDIDLS 82 (477)
Q Consensus 29 ~~kIL~~~~~---~--~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~----~~~~~~~~~~~~ 82 (477)
|.||.+ +++ | -.|==.-+..|+..|+++||+|+++|..... ....|.+.+.++
T Consensus 1 mkkIaI-iGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 1 MKKIAI-IGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP 62 (185)
T ss_pred CceEEE-EeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC
Confidence 677777 332 2 2344456677888899999999999983322 223556666555
No 211
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=61.38 E-value=17 Score=26.98 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=28.5
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+.+++ +..+...|..+...+|+.|.+.|..|...-.
T Consensus 16 k~~v~-i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 16 KAVVV-IVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CEEEE-EeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 44555 6777789999999999999999998764433
No 212
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=60.90 E-value=17 Score=37.09 Aligned_cols=100 Identities=19% Similarity=0.176 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHh-hCCCceEEEEecCC-CCC--CCCCCeEEeecCChhhh--hcCCCceEEEEcCChhHHHHHHHh----
Q psy15582 289 EDKRKAIVDSFK-QFPRHRIIWKWEED-ILP--DLPSNVICRKWLPQHDI--LAHPKVKLFIMQGGLQSSQEAIHF---- 358 (477)
Q Consensus 289 ~~~~~~i~~al~-~~~~~~~l~~~~~~-~~~--~~~~nv~i~~~vp~~~l--L~h~~~~~~I~hgG~~s~~Eal~~---- 358 (477)
.+.+..+++.++ ..+ +.+++--... ... ....+ ....|.+...+ +. ..+|++|+=||-||++.|+..
T Consensus 209 ~el~~~I~~~L~~~~g-i~V~ve~~~a~~l~~~~~~~~-~~~~~~~~~~~~~l~-~~~DlVIsiGGDGTlL~Aar~~~~~ 285 (508)
T PLN02935 209 RVLCAEMVRWLREQKG-LNIYVEPRVKKELLSESSYFN-FVQTWEDEKEILLLH-TKVDLVITLGGDGTVLWAASMFKGP 285 (508)
T ss_pred HHHHHHHHHHHHhcCC-CEEEEechhhhhhcccccccc-ccccccccchhhhcc-cCCCEEEEECCcHHHHHHHHHhccC
Confidence 566777777777 355 7777632210 000 00001 11112232221 21 358999999999999999874
Q ss_pred CCcEEeccCCcchHHHHHHHHHcC-ceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 359 GVPMIGIPFFADQDTNVRKLESMD-VARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 359 GvP~i~~P~~~dQ~~na~~~~~~G-~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
++|++.+-. | +|-. .+++++++.++|.++++++
T Consensus 286 ~iPILGIN~--------------G~LGFL---t~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 286 VPPVVPFSM--------------GSLGFM---TPFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CCcEEEEeC--------------CCccee---cccCHHHHHHHHHHHHcCC
Confidence 567776631 2 3443 3457899999999999754
No 213
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=60.20 E-value=11 Score=38.66 Aligned_cols=26 Identities=23% Similarity=0.120 Sum_probs=22.5
Q ss_pred CCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 41 YSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 41 ~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+|=-.-+-.|+++|+++||+|++++|
T Consensus 17 GGl~~~v~~L~~aL~~~G~~v~v~~p 42 (473)
T TIGR02095 17 GGLADVVGALPKALAALGHDVRVLLP 42 (473)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEec
Confidence 45556678899999999999999999
No 214
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.08 E-value=17 Score=34.43 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=58.1
Q ss_pred cHHHHHHHHHHHhhCCCceEEEEecC-CCCCCCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHH---hCCcEE
Q psy15582 288 QEDKRKAIVDSFKQFPRHRIIWKWEE-DILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIH---FGVPMI 363 (477)
Q Consensus 288 ~~~~~~~i~~al~~~~~~~~l~~~~~-~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~---~GvP~i 363 (477)
..+.++.+.+.+++.+ ..+.+.... ....... ..+...+.. ..++++|.-||-||+.+|+. .++|++
T Consensus 14 ~~~~~~~I~~~L~~~g-~~v~v~~~~~~~~~~~~-------~~~~~~~~~-~~~d~vi~iGGDGTlL~a~~~~~~~~pi~ 84 (277)
T PRK03708 14 ALKLAYRVYDFLKVSG-YEVVVDSETYEHLPEFS-------EEDVLPLEE-MDVDFIIAIGGDGTILRIEHKTKKDIPIL 84 (277)
T ss_pred HHHHHHHHHHHHHHCC-CEEEEecchhhhcCccc-------ccccccccc-cCCCEEEEEeCcHHHHHHHHhcCCCCeEE
Confidence 3567888888888877 777763211 1111000 000001111 24899999999999999985 356888
Q ss_pred eccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 364 GIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 364 ~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
.+|... .|-. .+++++++.+++.+++++.
T Consensus 85 gIn~G~-------------lGFl---~~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 85 GINMGT-------------LGFL---TEVEPEETFFALSRLLEGD 113 (277)
T ss_pred EEeCCC-------------CCcc---ccCCHHHHHHHHHHHHcCC
Confidence 887511 1211 1346788889999998653
No 215
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=59.89 E-value=18 Score=33.85 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=35.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK 70 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~ 70 (477)
|+||+.+..-||-|-..-+..||.+|+++|++|.++-.++..
T Consensus 1 m~~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~ 42 (270)
T PRK13185 1 MALVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKH 42 (270)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCc
Confidence 677766566789999999999999999999999998877543
No 216
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.55 E-value=17 Score=38.32 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=40.7
Q ss_pred CceEEEEcCChhHHHHHHHh----CCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 339 KVKLFIMQGGLQSSQEAIHF----GVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 339 ~~~~~I~hgG~~s~~Eal~~----GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
.++++|+-||-||++.|... ++|++.+-... +|-. .+++++++.+++.+++++.
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G~-------------lGFL---~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVNGEEIPIICINMGT-------------VGFL---TEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCCC-------------CCcC---cccCHHHHHHHHHHHHcCC
Confidence 48999999999999999773 78988874311 2322 3557899999999998653
No 217
>PLN02929 NADH kinase
Probab=59.31 E-value=23 Score=33.75 Aligned_cols=98 Identities=16% Similarity=0.222 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHH---hCCcEEe
Q psy15582 288 QEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIH---FGVPMIG 364 (477)
Q Consensus 288 ~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~---~GvP~i~ 364 (477)
.++..+.+.+.|++.+ +.+..... .+. .... ..+|++|+-||-||++-|.. .++|++.
T Consensus 32 h~~~~~~~~~~L~~~g-i~~~~v~r-~~~---------------~~~~--~~~Dlvi~lGGDGT~L~aa~~~~~~iPvlG 92 (301)
T PLN02929 32 HKDTVNFCKDILQQKS-VDWECVLR-NEL---------------SQPI--RDVDLVVAVGGDGTLLQASHFLDDSIPVLG 92 (301)
T ss_pred hHHHHHHHHHHHHHcC-CEEEEeec-ccc---------------cccc--CCCCEEEEECCcHHHHHHHHHcCCCCcEEE
Confidence 4677777888888877 65522221 110 1122 34899999999999999865 4689988
Q ss_pred ccCCc------chHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 365 IPFFA------DQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 365 ~P~~~------dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
+-..- +++.|... ++...|-... ++++++.++|.+++++.
T Consensus 93 IN~Gp~~~~~~~~~~~~~~-~~r~lGfL~~---~~~~~~~~~L~~il~g~ 138 (301)
T PLN02929 93 VNSDPTQKDEVEEYSDEFD-ARRSTGHLCA---ATAEDFEQVLDDVLFGR 138 (301)
T ss_pred EECCCcccccccccccccc-cccCcccccc---CCHHHHHHHHHHHHcCC
Confidence 75421 22333311 2223554433 46889999999999763
No 218
>PRK09004 FMN-binding protein MioC; Provisional
Probab=59.05 E-value=14 Score=31.22 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=27.2
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
|+||.|++..-+..=-.-+..|++.|.++|++|+++..
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~ 38 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHG 38 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEecc
Confidence 67888876665534444556778888889999987643
No 219
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=58.62 E-value=13 Score=38.23 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=20.8
Q ss_pred CcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 42 SHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 42 GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
|=-.-.-.|+++|+++||+|++++|
T Consensus 17 Gl~~~~~~L~~aL~~~G~~V~Vi~p 41 (476)
T cd03791 17 GLGDVVGALPKALAKLGHDVRVIMP 41 (476)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4444556699999999999999998
No 220
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=56.96 E-value=13 Score=32.73 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=29.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
|+||++.++ |..-..-...+.+.|.++|++|.++.+.
T Consensus 1 ~k~Ill~vt--Gsiaa~~~~~li~~L~~~g~~V~vv~T~ 37 (182)
T PRK07313 1 MKNILLAVS--GSIAAYKAADLTSQLTKRGYQVTVLMTK 37 (182)
T ss_pred CCEEEEEEe--ChHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 678887443 4456667899999999999999988873
No 221
>KOG3062|consensus
Probab=56.89 E-value=24 Score=32.00 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=29.9
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCE-EEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHT-VTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~-V~~~~~ 66 (477)
|+=|+| ++.|..|--.++..|.++|+++||. +..+..
T Consensus 1 MpLVvi-~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 1 MPLVVI-CGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred CCeEEE-eCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 445656 8999999999999999999999986 444444
No 222
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=56.50 E-value=18 Score=30.17 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=33.1
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+..|||+ .+.++-+|-.-..-++..|..+|.+|+++..
T Consensus 2 ~~~~vl~-~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~ 39 (137)
T PRK02261 2 KKKTVVL-GVIGADCHAVGNKILDRALTEAGFEVINLGV 39 (137)
T ss_pred CCCEEEE-EeCCCChhHHHHHHHHHHHHHCCCEEEECCC
Confidence 3467877 7788999999999999999999999998876
No 223
>PRK14098 glycogen synthase; Provisional
Probab=55.99 E-value=17 Score=37.66 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=30.0
Q ss_pred cccccEEEEcCC--C---CCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 27 VESANVLIICPT--P---SYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 27 ~~~~kIL~~~~~--~---~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
..|.|||++.+= | ..|=-..+-+|.++|+++||+|.++.|
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P 47 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMP 47 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcC
Confidence 467889884331 1 245556677889999999999999999
No 224
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=55.53 E-value=30 Score=31.98 Aligned_cols=54 Identities=15% Similarity=0.253 Sum_probs=36.9
Q ss_pred CceEEEEcCChhHHHHHHHh----CCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcC
Q psy15582 339 KVKLFIMQGGLQSSQEAIHF----GVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYN 407 (477)
Q Consensus 339 ~~~~~I~hgG~~s~~Eal~~----GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~ 407 (477)
.++++|+-||-||++.|+.. ++|++.+-.. .+|-..+ ..+++++.+++.++..+
T Consensus 25 ~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G-------------~lGFL~~--~~~~~e~~~~l~~~~~~ 82 (246)
T PRK04761 25 EADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRG-------------SVGFLMN--EYSEDDLLERIAAAEPT 82 (246)
T ss_pred cCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC-------------CCCcccC--CCCHHHHHHHHHHhhcC
Confidence 37899999999999988764 6788877431 1333322 23567777777777644
No 225
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=55.18 E-value=39 Score=35.00 Aligned_cols=88 Identities=23% Similarity=0.284 Sum_probs=55.3
Q ss_pred CCCCCCeEEeecCChhh---hhcCCCceEEEEcCCh---hHHHHHHHhCCcEEec----cCC-------cch----HHHH
Q psy15582 317 PDLPSNVICRKWLPQHD---ILAHPKVKLFIMQGGL---QSSQEAIHFGVPMIGI----PFF-------ADQ----DTNV 375 (477)
Q Consensus 317 ~~~~~nv~i~~~vp~~~---lL~h~~~~~~I~hgG~---~s~~Eal~~GvP~i~~----P~~-------~dQ----~~na 375 (477)
..+|.-|.--+.+++.+ +| .++++||-=|.- -+-+||+++|+|.|-- |.. .+. ..++
T Consensus 318 ~~~P~~V~NHG~l~~~ef~~lL--~~akvfiGlGfP~EgPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~S 395 (559)
T PF15024_consen 318 PNVPSFVKNHGILSGDEFQQLL--RKAKVFIGLGFPYEGPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTS 395 (559)
T ss_pred cccchhhhhcCcCCHHHHHHHH--HhhhEeeecCCCCCCCChHHHHHcCCccccccCCCCCcccccccccCCCCcceecc
Confidence 45676666667777654 77 459999977764 5799999999987721 211 111 1111
Q ss_pred H--HHHH-cCc--eEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 376 R--KLES-MDV--ARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 376 ~--~~~~-~G~--g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
+ .+++ .|- -..++.. +.+++.+||+++|+++
T Consensus 396 QhPY~e~~iG~PhVytVd~~--n~~~v~~Avk~il~~~ 431 (559)
T PF15024_consen 396 QHPYAEEFIGEPHVYTVDIN--NSTEVEAAVKAILATP 431 (559)
T ss_pred CChHHHhhCCCCeEEEEcCC--CHHHHHHHHHHHHhcC
Confidence 1 1221 343 2344443 8899999999999763
No 226
>PRK08105 flavodoxin; Provisional
Probab=55.16 E-value=16 Score=30.81 Aligned_cols=38 Identities=24% Similarity=0.126 Sum_probs=29.6
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
|.||.|++..-+..=-.-+..|++.|.++|++|.++..
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~ 38 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFED 38 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEech
Confidence 67888877766655556677889999999999988765
No 227
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=55.16 E-value=12 Score=32.91 Aligned_cols=37 Identities=5% Similarity=-0.032 Sum_probs=29.0
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHh-CCCEEEEEeec
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVR-RGHTVTMIGTD 67 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~-rGH~V~~~~~~ 67 (477)
|+||++-++ |..-..-...++++|.+ .||+|+++.+.
T Consensus 1 ~k~IllgVT--Gsiaa~ka~~l~~~L~k~~g~~V~vv~T~ 38 (185)
T PRK06029 1 MKRLIVGIS--GASGAIYGVRLLQVLRDVGEIETHLVISQ 38 (185)
T ss_pred CCEEEEEEE--CHHHHHHHHHHHHHHHhhcCCeEEEEECH
Confidence 678877333 34458889999999999 59999998883
No 228
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=54.73 E-value=17 Score=29.05 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=29.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
|+++ .+.+..-|-.-...+|..|.++||+|.++..
T Consensus 2 ~v~~-~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 2 RVVL-ACVPGEVHPLGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp EEEE-EEBTTSSTSHHHHHHHHHHHHTTBEEEEEES
T ss_pred EEEE-EeeCCcchhHHHHHHHHHHHHCCCeEEEECC
Confidence 5566 6778889999999999999999999998754
No 229
>PRK06756 flavodoxin; Provisional
Probab=54.71 E-value=20 Score=30.09 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=27.9
Q ss_pred cccEEEEcCCCCCCcHHH-HHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVP-FIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~-~l~la~~L~~rGH~V~~~~~ 66 (477)
|+||++++.. .+||..- +..|++.|.++|++|.+...
T Consensus 1 mmkv~IiY~S-~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFAS-MSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEEC-CCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 5688886655 5677766 56778999999999987654
No 230
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=52.71 E-value=30 Score=30.79 Aligned_cols=42 Identities=14% Similarity=0.304 Sum_probs=35.0
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE 71 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~ 71 (477)
+||++++...|-|-..-...||..++.+|..|.+++.+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 367677898999999999999999999999999999976654
No 231
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=52.59 E-value=1.2e+02 Score=29.87 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=26.9
Q ss_pred hhcCCCceEEEEcCChhH---HHHHHHhCCcEEec
Q psy15582 334 ILAHPKVKLFIMQGGLQS---SQEAIHFGVPMIGI 365 (477)
Q Consensus 334 lL~h~~~~~~I~hgG~~s---~~Eal~~GvP~i~~ 365 (477)
++..-+-|++|++||+-| +..|...|+|.++.
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 355567889999999987 89999999999875
No 232
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=52.55 E-value=38 Score=30.94 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=36.4
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE 71 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~ 71 (477)
|+=|.|..+-||.|-..-.+.||.+|+++|-.|+++-.++.+.
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 4456665666899999999999999999999999999877664
No 233
>PRK05568 flavodoxin; Provisional
Probab=52.53 E-value=25 Score=29.14 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=26.4
Q ss_pred cccEEEEcCCCCCCcHHH-HHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVP-FIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~-~l~la~~L~~rGH~V~~~~~ 66 (477)
|+|+++++.. .+|+... +.++++.+.+.|++|.++-.
T Consensus 1 m~~~~IvY~S-~~GnT~~~a~~i~~~~~~~g~~v~~~~~ 38 (142)
T PRK05568 1 MKKINIIYWS-GTGNTEAMANLIAEGAKENGAEVKLLNV 38 (142)
T ss_pred CCeEEEEEEC-CCchHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 6688776655 4566555 45678888889999988755
No 234
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=52.43 E-value=1e+02 Score=26.28 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=20.4
Q ss_pred ceEEEEcCCh------hHHHHHHHhCCcEEeccC
Q psy15582 340 VKLFIMQGGL------QSSQEAIHFGVPMIGIPF 367 (477)
Q Consensus 340 ~~~~I~hgG~------~s~~Eal~~GvP~i~~P~ 367 (477)
..+++.+.|- +.+.||...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 4555666555 347889999999998853
No 235
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=52.30 E-value=29 Score=28.46 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=25.2
Q ss_pred cEEEEcCCCCCCc--HHHHHHHHHHHHhCCCEE-EEEee
Q psy15582 31 NVLIICPTPSYSH--QVPFIAIGKELVRRGHTV-TMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH--~~~~l~la~~L~~rGH~V-~~~~~ 66 (477)
|+++++..+-+|+ ..-.+.+|+++.++||+| .++-.
T Consensus 2 ~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 2 RYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 6766666554444 456777899999999995 54444
No 236
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=51.86 E-value=36 Score=30.30 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=34.3
Q ss_pred cccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCC
Q psy15582 27 VESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPL 69 (477)
Q Consensus 27 ~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~ 69 (477)
.+++.|.|..+-+|-|=..-...||..|+++|++|.++-.+..
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4465566655667889999999999999999999988877543
No 237
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=51.65 E-value=27 Score=31.14 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=28.2
Q ss_pred cccEEEEcCCCCCCcHHHHHH-HHHHHHh-CCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIA-IGKELVR-RGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~-la~~L~~-rGH~V~~~~~ 66 (477)
|+||++++..+ +||...+.. +++.+.+ .|++|.++..
T Consensus 1 M~kilIvy~S~-~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 1 MAKVLVLYYSM-YGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CCeEEEEEcCC-CCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 56898866655 699888665 6777776 8999988875
No 238
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=51.47 E-value=57 Score=29.11 Aligned_cols=35 Identities=9% Similarity=0.132 Sum_probs=22.9
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCC--CEEEEEeec
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRG--HTVTMIGTD 67 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rG--H~V~~~~~~ 67 (477)
|.||.|+++ ++ |+ .+.++.+++.+.+ ++|.++.+.
T Consensus 1 m~ki~vl~s-g~-gs--~~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 1 MKRIVVLAS-GN-GS--NLQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred CceEEEEEc-CC-Ch--hHHHHHHHHHcCCCCcEEEEEEec
Confidence 689988554 22 33 4557778887764 677776664
No 239
>PLN00016 RNA-binding protein; Provisional
Probab=51.36 E-value=16 Score=36.17 Aligned_cols=40 Identities=40% Similarity=0.465 Sum_probs=28.3
Q ss_pred cccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 27 VESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 27 ~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
..+.|||| +..-++|+=.-...|++.|.++||+|+.++..
T Consensus 50 ~~~~~VLV-t~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 50 VEKKKVLI-VNTNSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cccceEEE-EeccCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 45678988 42223344445677889999999999998874
No 240
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=50.60 E-value=2.6e+02 Score=27.64 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=35.1
Q ss_pred CeEEeecCChhh---hhcCCCceEEEEcCChhHHHHHHHhCCcEE--eccC
Q psy15582 322 NVICRKWLPQHD---ILAHPKVKLFIMQGGLQSSQEAIHFGVPMI--GIPF 367 (477)
Q Consensus 322 nv~i~~~vp~~~---lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i--~~P~ 367 (477)
.+.+.+|+||.+ +| -.||+=+=.| --|+.-|.-+|+|.| ++|.
T Consensus 245 ~l~~lPF~~Q~~yD~LL--w~cD~NfVRG-EDSfVRAqwAgkPFvWhIYpQ 292 (374)
T PF10093_consen 245 TLHVLPFVPQDDYDRLL--WACDFNFVRG-EDSFVRAQWAGKPFVWHIYPQ 292 (374)
T ss_pred EEEECCCCCHHHHHHHH--HhCccceEec-chHHHHHHHhCCCceEecCcC
Confidence 567889999864 77 4588888784 579999999999999 7775
No 241
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=50.41 E-value=1.8e+02 Score=28.07 Aligned_cols=135 Identities=13% Similarity=0.149 Sum_probs=74.5
Q ss_pred CceEEeCccccCCCCCCChhhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCC-CC
Q psy15582 242 PNTILLGPIHLNNPKPLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPD-LP 320 (477)
Q Consensus 242 ~~~~~vG~~~~~~~~~~~~~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~-~~ 320 (477)
.++.+.|+ ..+.+.++.+++. .+ ...|+++-||...+- +|.=.+..+.+++++.. ..++....-...+. ..
T Consensus 167 ~~V~~~~~---~~~~a~~eaveAI-~~--AD~IviGPgSl~TSI-lP~Lllp~I~eaLr~~~-ap~i~v~n~~~~~g~~t 238 (323)
T COG0391 167 HRVRLEGP---EKPSAAPEAVEAI-KE--ADLIVIGPGSLFTSI-LPILLLPGIAEALRETV-APIVYVCNLMTQAGKET 238 (323)
T ss_pred eEEEEecC---CCCCCCHHHHHHH-Hh--CCEEEEcCCccHhhh-chhhchhHHHHHHHhCC-CCEEEeccCCCCCCccc
Confidence 45666663 2234555555553 33 678999999988875 67788899999999876 66665443222221 23
Q ss_pred CCeEEeecCChh-hhhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHH
Q psy15582 321 SNVICRKWLPQH-DILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVT 399 (477)
Q Consensus 321 ~nv~i~~~vp~~-~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ 399 (477)
+++...+.+--. +-+....+|.+|-+.- ...+|..+ +++++.+.-+..+...++.+.+..
T Consensus 239 ~~~~~~d~i~~i~~~~g~~~iD~vivd~~------------------~~~~~~~~-~~~~~~~~~V~~~~~~~~~~~~~~ 299 (323)
T COG0391 239 DGLSVEDHIAALAQHYGAFVIDAVIVDND------------------DVEDEDLI-RYVEEKGLEVEIDPTLLDREGLRR 299 (323)
T ss_pred ccccHHHHHHHHHHHhCcccCcEEEECCC------------------CccHHHHH-HHhhhcCceeEechhhhhchhhHH
Confidence 333333221110 1111111333333321 23466666 888888888887765555555544
Q ss_pred HHHH
Q psy15582 400 LMKS 403 (477)
Q Consensus 400 al~~ 403 (477)
.+.+
T Consensus 300 ~~~~ 303 (323)
T COG0391 300 ALAR 303 (323)
T ss_pred HHHH
Confidence 4443
No 242
>PLN02470 acetolactate synthase
Probab=50.35 E-value=52 Score=34.91 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=56.3
Q ss_pred ecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC----CC--CCCeEEeecCC-hhhh-------hcCCCceE
Q psy15582 277 SLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP----DL--PSNVICRKWLP-QHDI-------LAHPKVKL 342 (477)
Q Consensus 277 s~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~----~~--~~nv~i~~~vp-~~~l-------L~h~~~~~ 342 (477)
+|||....+ .+....+.+++.|++.+ .+.|+.+.|.... .+ .++++++.--. +... ..+.+..+
T Consensus 2 ~~~~~~~~~-~~~~~a~~l~~~L~~~G-V~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv 79 (585)
T PLN02470 2 TFQSRFAPD-EPRKGADILVEALEREG-VDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGV 79 (585)
T ss_pred CcccCCCCC-ccccHHHHHHHHHHHcC-CCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEE
Confidence 356665544 23455778899999988 9999988876432 12 22454443221 1111 11245778
Q ss_pred EEEcCChh------HHHHHHHhCCcEEecc
Q psy15582 343 FIMQGGLQ------SSQEAIHFGVPMIGIP 366 (477)
Q Consensus 343 ~I~hgG~~------s~~Eal~~GvP~i~~P 366 (477)
+++|.|-| .+.||.+.++|+|++.
T Consensus 80 ~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 80 CIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred EEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 88887764 4889999999999884
No 243
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=50.07 E-value=23 Score=29.98 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=28.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
|+||++++.+.+..=-.-+..|++.|.+.|++|++...
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~ 38 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIR 38 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeec
Confidence 78998877766644455667778888889999955444
No 244
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=49.34 E-value=2.7e+02 Score=27.35 Aligned_cols=128 Identities=10% Similarity=0.074 Sum_probs=82.8
Q ss_pred CCceEEEe---cCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCceEEEEc
Q psy15582 270 KDGVIYFS---LGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQ 346 (477)
Q Consensus 270 ~~~~V~vs---~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~h 346 (477)
+...||++ +|.-....+++.+.+++.++.+.+.+ .++.+.+..-..+. ....|.....-|..-.+|.+|-.
T Consensus 26 GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~g-kk~~V~~N~~~~~~-----~~~~~~~~l~~l~e~GvDaviv~ 99 (347)
T COG0826 26 GADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAG-KKVYVAVNTLLHND-----ELETLERYLDRLVELGVDAVIVA 99 (347)
T ss_pred CCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcC-CeEEEEeccccccc-----hhhHHHHHHHHHHHcCCCEEEEc
Confidence 46678887 44444444467777888888888888 77776665322111 11223333333333446665532
Q ss_pred CChhHHHHHHHhC--CcEEeccCC-cchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHH
Q psy15582 347 GGLQSSQEAIHFG--VPMIGIPFF-ADQDTNVRKLESMDVARFLEYENITAETLVTLMKSI 404 (477)
Q Consensus 347 gG~~s~~Eal~~G--vP~i~~P~~-~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~l 404 (477)
..+-+.=+-..| +|+.+-++. ..-..-+....++|+-+++....++-++|.+..+++
T Consensus 100 -Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 100 -DPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred -CHHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhC
Confidence 334444444445 888877754 477888889999999888888889999998888887
No 245
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=48.61 E-value=55 Score=32.05 Aligned_cols=40 Identities=8% Similarity=0.012 Sum_probs=34.8
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhC--CCEEEEEeecC
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRR--GHTVTMIGTDP 68 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~r--GH~V~~~~~~~ 68 (477)
.+.|||| +-..+.|++.-+.++.++|+++ +.+|++++...
T Consensus 4 ~~~~ILi-i~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~ 45 (352)
T PRK10422 4 PFRRILI-IKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQD 45 (352)
T ss_pred CCceEEE-EEecccCceeeHHHHHHHHHHHCCCCeEEEEeccC
Confidence 4678999 6778899999999999999997 78999998743
No 246
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=48.22 E-value=20 Score=29.07 Aligned_cols=22 Identities=32% Similarity=0.274 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEee
Q psy15582 45 VPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 45 ~~~l~la~~L~~rGH~V~~~~~ 66 (477)
.-..+++.+-++|||+|.++.+
T Consensus 18 DTT~alm~eAq~RGhev~~~~~ 39 (119)
T PF02951_consen 18 DTTFALMLEAQRRGHEVFYYEP 39 (119)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-G
T ss_pred ChHHHHHHHHHHCCCEEEEEEc
Confidence 4577899999999999999988
No 247
>PRK09739 hypothetical protein; Provisional
Probab=48.21 E-value=40 Score=29.99 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=27.7
Q ss_pred ccccEEEEcCCCCCCc--HHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 28 ESANVLIICPTPSYSH--QVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH--~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
+|+|||++.+.+-.+- -.-...+++++.++||+|+++-..
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 3789999877774432 223455677788889999987763
No 248
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=47.87 E-value=21 Score=31.15 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=28.1
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
+||++.+ .|.+...-...+.+.|.++|++|.++.+.
T Consensus 1 k~I~lgv--tGs~~a~~~~~ll~~L~~~g~~V~vi~T~ 36 (177)
T TIGR02113 1 KKILLAV--TGSIAAYKAADLTSQLTKLGYDVTVLMTQ 36 (177)
T ss_pred CEEEEEE--cCHHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 3676633 35567778889999999999999988873
No 249
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=47.83 E-value=20 Score=33.19 Aligned_cols=26 Identities=23% Similarity=0.209 Sum_probs=21.4
Q ss_pred CCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 41 YSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 41 ~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+|=-..+-.|+++|+++||+|++++|
T Consensus 16 GGLgdv~~~L~kaL~~~G~~V~Vi~P 41 (245)
T PF08323_consen 16 GGLGDVVGSLPKALAKQGHDVRVIMP 41 (245)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CcHhHHHHHHHHHHHhcCCeEEEEEc
Confidence 45556678899999999999999999
No 250
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=47.39 E-value=38 Score=30.23 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=33.0
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+.+||++ .+.+|-.|-....-++..|..+|++|+++..
T Consensus 81 ~~~~vl~-~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~ 118 (201)
T cd02070 81 KKGKVVI-GTVEGDIHDIGKNLVATMLEANGFEVIDLGR 118 (201)
T ss_pred CCCeEEE-EecCCccchHHHHHHHHHHHHCCCEEEECCC
Confidence 3568887 7778999999999999999999999987765
No 251
>PLN02727 NAD kinase
Probab=47.31 E-value=37 Score=37.43 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=41.4
Q ss_pred CCceEEEEcCChhHHHHHHHh----CCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcCH
Q psy15582 338 PKVKLFIMQGGLQSSQEAIHF----GVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408 (477)
Q Consensus 338 ~~~~~~I~hgG~~s~~Eal~~----GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~~ 408 (477)
..+|++|+=||-||++.|... ++|++.+-.. .+|-. .+++++++.++|.+++++.
T Consensus 742 ~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlG-------------rLGFL---Tdi~~ee~~~~L~~Il~G~ 800 (986)
T PLN02727 742 ERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLG-------------SLGFL---TSHYFEDFRQDLRQVIHGN 800 (986)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCC-------------Ccccc---ccCCHHHHHHHHHHHHcCC
Confidence 358999999999999999774 6788877431 13322 2467899999999999654
No 252
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=47.28 E-value=36 Score=31.42 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=33.9
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDP 68 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~ 68 (477)
|+.|.+..+-||-|-..-+-+||..|++.|+.|..+-.++
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dp 40 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDP 40 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 6667665667899999999999999999999998887743
No 253
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=47.12 E-value=1.8e+02 Score=24.83 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=22.9
Q ss_pred CCceEEEEcCChh------HHHHHHHhCCcEEecc
Q psy15582 338 PKVKLFIMQGGLQ------SSQEAIHFGVPMIGIP 366 (477)
Q Consensus 338 ~~~~~~I~hgG~~------s~~Eal~~GvP~i~~P 366 (477)
.+..++++|.|-| .+.+|...++|+|++.
T Consensus 62 g~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 62 GKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3466777777764 5889999999999885
No 254
>PRK13768 GTPase; Provisional
Probab=46.49 E-value=35 Score=31.71 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=35.2
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPL 69 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~ 69 (477)
|.++.++.+.+|.|-..-+..++..|+.+|++|.++..++.
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 55676768889999999999999999999999999987653
No 255
>smart00096 UTG Uteroglobin.
Probab=46.45 E-value=90 Score=22.48 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q psy15582 393 TAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVLKA 442 (477)
Q Consensus 393 ~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~~ 442 (477)
|++.....+...-.|++..+++.++++-.-.=+....+.+..++|.+...
T Consensus 17 t~~~Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~kI~~s 66 (69)
T smart00096 17 TPSSYEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEKIYTS 66 (69)
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 77888899999988999999999988866554456677888888887654
No 256
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=46.40 E-value=70 Score=30.65 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=25.6
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK 70 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~ 70 (477)
|.||+| ..++. .....-++|.+.||+|.-+.+.+.+
T Consensus 1 ~mkivF-~GTp~-----fa~~~L~~L~~~~~eivaV~Tqpdk 36 (307)
T COG0223 1 MMRIVF-FGTPE-----FAVPSLEALIEAGHEIVAVVTQPDK 36 (307)
T ss_pred CcEEEE-EcCch-----hhHHHHHHHHhCCCceEEEEeCCCC
Confidence 568888 56554 4566778888899999877664433
No 257
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=46.17 E-value=10 Score=32.37 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCEEEEEeecC
Q psy15582 46 PFIAIGKELVRRGHTVTMIGTDP 68 (477)
Q Consensus 46 ~~l~la~~L~~rGH~V~~~~~~~ 68 (477)
...++|..|+++||+|++.+.+.
T Consensus 10 ~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 10 WGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHHHcCCEEEEEeccH
Confidence 34589999999999999999843
No 258
>PRK05569 flavodoxin; Provisional
Probab=45.87 E-value=34 Score=28.30 Aligned_cols=37 Identities=19% Similarity=0.005 Sum_probs=26.2
Q ss_pred cccEEEEcCCCCCCcHH-HHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQV-PFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~-~~l~la~~L~~rGH~V~~~~~ 66 (477)
|.||++++..+ +|+.. -+..+++.+.+.|++|.+...
T Consensus 1 m~ki~iiY~S~-tGnT~~iA~~i~~~~~~~g~~v~~~~~ 38 (141)
T PRK05569 1 MKKVSIIYWSC-GGNVEVLANTIADGAKEAGAEVTIKHV 38 (141)
T ss_pred CCeEEEEEECC-CCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56887766665 56654 456668888888999877655
No 259
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=45.55 E-value=30 Score=28.87 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=33.7
Q ss_pred cccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 27 VESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 27 ~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
.+..||++ .+.+.-||-....-+++.|++.|.+|.....
T Consensus 10 g~rprvlv-ak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 10 GARPRVLV-AKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCCceEEE-eccCccccccchHHHHHHHHhCCceEEecCC
Confidence 46678888 6777899999999999999999999987655
No 260
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.03 E-value=1e+02 Score=29.63 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHHh----CCcEEe
Q psy15582 289 EDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHF----GVPMIG 364 (477)
Q Consensus 289 ~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~----GvP~i~ 364 (477)
.+.+..+.+.+++.+ +.+.+....... .+.. .+ . ...- ..++++|.-||-||+.+++.. ++|++.
T Consensus 18 ~~~~~~i~~~L~~~g-~~v~v~~~~~~~--~~~~----~~-~-~~~~--~~~d~vi~~GGDGT~l~~~~~~~~~~~pv~g 86 (305)
T PRK02645 18 KEAAERCAKQLEARG-CKVLMGPSGPKD--NPYP----VF-L-ASAS--ELIDLAIVLGGDGTVLAAARHLAPHDIPILS 86 (305)
T ss_pred HHHHHHHHHHHHHCC-CEEEEecCchhh--cccc----ch-h-hccc--cCcCEEEEECCcHHHHHHHHHhccCCCCEEE
Confidence 466777888887777 776653322110 0100 01 1 1112 348999999999999999874 789888
Q ss_pred ccC
Q psy15582 365 IPF 367 (477)
Q Consensus 365 ~P~ 367 (477)
+..
T Consensus 87 in~ 89 (305)
T PRK02645 87 VNV 89 (305)
T ss_pred Eec
Confidence 854
No 261
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=44.98 E-value=39 Score=31.12 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=33.5
Q ss_pred cccEEEEc-CCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC
Q psy15582 29 SANVLIIC-PTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK 70 (477)
Q Consensus 29 ~~kIL~~~-~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~ 70 (477)
|+||.++. .-+|-|-......+|..|+++|++|.++-.++..
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n 43 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVN 43 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 56775544 4578899999999999999999999888776443
No 262
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=44.95 E-value=34 Score=26.90 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=32.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC----CCCCeeEEEccc
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE----PPVNYTDIDLSF 83 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~----~~~~~~~~~~~~ 83 (477)
|.|||+ +|..|.|=-.-...+-+.+.++|.++.+-....... ...+++.+-+.+
T Consensus 1 MkkILl-vCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~P 58 (104)
T PRK09590 1 MKKALI-ICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSP 58 (104)
T ss_pred CcEEEE-ECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEECh
Confidence 678998 454444444667777788888999988755422111 123466665554
No 263
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=44.92 E-value=41 Score=28.84 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=34.2
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
|.+|+-++.+-+.|-..-.-+|++.|.+||+.|-.+-.
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH 38 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKH 38 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEe
Confidence 67888878888899999999999999999999988777
No 264
>PRK06703 flavodoxin; Provisional
Probab=44.53 E-value=34 Score=28.77 Aligned_cols=37 Identities=19% Similarity=0.087 Sum_probs=26.5
Q ss_pred cccEEEEcCCCCCCcHHH-HHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVP-FIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~-~l~la~~L~~rGH~V~~~~~ 66 (477)
|+|+++++.. .+|+... +..|++.|.+.|++|++.-.
T Consensus 1 mmkv~IiY~S-~tGnT~~iA~~ia~~l~~~g~~v~~~~~ 38 (151)
T PRK06703 1 MAKILIAYAS-MSGNTEDIADLIKVSLDAFDHEVVLQEM 38 (151)
T ss_pred CCeEEEEEEC-CCchHHHHHHHHHHHHHhcCCceEEEeh
Confidence 5688776665 4466554 45678889889999987655
No 265
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=44.43 E-value=45 Score=28.51 Aligned_cols=35 Identities=17% Similarity=0.413 Sum_probs=26.6
Q ss_pred ceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEE
Q psy15582 272 GVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIW 309 (477)
Q Consensus 272 ~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~ 309 (477)
..+|+++||+... +...++..+.++.+.++.+++-
T Consensus 2 ~~vyl~LGSNlgd---~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 2 TRVYLGLGSNLGD---RLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred cEEEEEecCCCCC---HHHHHHHHHHHHHhCCCceEEE
Confidence 3689999999872 4566888888998888555554
No 266
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=44.09 E-value=64 Score=28.45 Aligned_cols=38 Identities=13% Similarity=0.292 Sum_probs=33.2
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
..||++|++.++.-|-.-...+++.|++.|-.|.+++-
T Consensus 107 ~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~ 144 (187)
T cd01452 107 KQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINF 144 (187)
T ss_pred cceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEe
Confidence 35888878988888888888999999999999999888
No 267
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=43.57 E-value=3.1e+02 Score=28.01 Aligned_cols=154 Identities=14% Similarity=0.094 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhCCCceEEEEecCCC-C-----C-----CCCCCeEE-eecCChhhhhcCCCceEEEEcCChhHHHHHH
Q psy15582 289 EDKRKAIVDSFKQFPRHRIIWKWEEDI-L-----P-----DLPSNVIC-RKWLPQHDILAHPKVKLFIMQGGLQSSQEAI 356 (477)
Q Consensus 289 ~~~~~~i~~al~~~~~~~~l~~~~~~~-~-----~-----~~~~nv~i-~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal 356 (477)
..+..++-.|+.+.| ..-||.-...+ + . ..+..+++ .+-..-..+|.| +|=|-|--. ++=.||+
T Consensus 166 ~~~l~m~~~ai~enp-~a~i~~kthpdvl~gkkqg~lt~~~~~~r~~ll~edfnpisll~~--~dkvy~~ts-~mgfeal 241 (671)
T COG3563 166 STFLLMFQTAINENP-QADIWVKTHPDVLCGKKQGYLTQLSQQHRVHLLAEDFNPISLLQN--VDKVYCVTS-QMGFEAL 241 (671)
T ss_pred hHHHHHHHHHHhcCC-cccEEEEeCCchhcCcccchhhhhccCceEEEecccCChHHHHHh--cceeEEeec-cccHHHH
Confidence 566777888888888 76777543321 1 1 23455554 455666667765 554433322 2337999
Q ss_pred HhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhcCCCChHHHHHH
Q psy15582 357 HFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYN--ETVYRKSQVYSKLSNTQMMSPKDTAVW 434 (477)
Q Consensus 357 ~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~--~~~~~~a~~~~~~~~~~~~~~~~~a~~ 434 (477)
-+|+|.++..+. + -.|+|++=++ |.+.=+..-.+ +-+...--+.++-++.. .+-....-+
T Consensus 242 l~~~~~~~fg~p----~------yagwgltddr-------l~~~~r~akrsl~qlfyaay~~y~ry~np~-~~~~~~lfd 303 (671)
T COG3563 242 LCGKPLTTFGLP----W------YAGWGLTDDR-------LEQTQRRAKRSLLQLFYAAYLQYSRYLNPN-TGEAGSLFD 303 (671)
T ss_pred hcCCceeeecch----h------hcccCcchhH-------HHHHHhhhhhhHHHHHHHHHHHHHHhcCCC-ccccchHHH
Confidence 999999966431 1 1266655332 22222211111 22333334445556543 344566778
Q ss_pred HHHHHHHhCCCCCC-ccccC--CCCChhhhhHhH
Q psy15582 435 WIEYVLKAEGNVDH-LKYNL--DQIPWYQYYLVD 465 (477)
Q Consensus 435 ~ie~~~~~~~~~~~-l~~~~--~~~~~~~~~~ld 465 (477)
.|++++..+. .+. ++... ..|++|+..-.+
T Consensus 304 ~id~lat~k~-~~~~~~~~lf~vG~~~WKR~v~~ 336 (671)
T COG3563 304 VIDYLATVKR-KNDKLRGELFCVGMSLWKRAVAK 336 (671)
T ss_pred HHHHHHHHhc-cccCCCCceEEEehHHhhhhhhc
Confidence 8999998776 432 23221 256666655443
No 268
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=42.48 E-value=45 Score=30.20 Aligned_cols=40 Identities=15% Similarity=0.033 Sum_probs=28.3
Q ss_pred cccEEEEcCCC---CCCcHHHHHHHHHHHHhCCCEEEEEeecC
Q psy15582 29 SANVLIICPTP---SYSHQVPFIAIGKELVRRGHTVTMIGTDP 68 (477)
Q Consensus 29 ~~kIL~~~~~~---~~GH~~~~l~la~~L~~rGH~V~~~~~~~ 68 (477)
|+||+++++.- ......=+..--..|.+.|++|+++++..
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 56898866521 12345555666788999999999999943
No 269
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=42.20 E-value=56 Score=26.20 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=32.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecC
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDP 68 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~ 68 (477)
||++ ..-+|.|-......+|+.|+++|.+|.++..++
T Consensus 1 ~i~~-~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAI-TGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEE-ECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4656 788899999999999999999999999888876
No 270
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=42.14 E-value=57 Score=30.74 Aligned_cols=41 Identities=15% Similarity=0.349 Sum_probs=35.7
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPL 69 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~ 69 (477)
..+++.+++.+|-|-..-...||..|+++|+.|.+++.+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 35676668889999999999999999999999999998753
No 271
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=42.05 E-value=60 Score=26.33 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=25.4
Q ss_pred cEEEEcCCCCCCcHHH--HHHHHHHHHhCCC-EEEEEee
Q psy15582 31 NVLIICPTPSYSHQVP--FIAIGKELVRRGH-TVTMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~--~l~la~~L~~rGH-~V~~~~~ 66 (477)
|+.+++..|.+|+-+. .+.+|++|.+.|| +|.++-.
T Consensus 2 ~~~Ivvt~ppYg~q~a~~A~~fA~all~~gh~~v~iFly 40 (126)
T COG1553 2 KYTIVVTGPPYGTESAFSALRFAEALLEQGHELVRLFLY 40 (126)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 5666677788886554 5667999999974 6665544
No 272
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=41.05 E-value=28 Score=30.72 Aligned_cols=36 Identities=22% Similarity=0.107 Sum_probs=25.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
||++- -+|+.|=..-...+.++|.++|++|+++.+.
T Consensus 2 ~I~lg-ITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~ 37 (187)
T TIGR02852 2 RIGFG-LTGSHCTLEAVMPQLEKLVDEGAEVTPIVSE 37 (187)
T ss_pred EEEEE-EecHHHHHHHHHHHHHHHHhCcCEEEEEEch
Confidence 56662 2344444444459999999999999988874
No 273
>PRK00170 azoreductase; Reviewed
Probab=41.04 E-value=51 Score=29.16 Aligned_cols=38 Identities=18% Similarity=0.093 Sum_probs=25.6
Q ss_pred cccEEEEcCCCCC--CcHHHHH-HHHHHHHhC--CCEEEEEee
Q psy15582 29 SANVLIICPTPSY--SHQVPFI-AIGKELVRR--GHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~--GH~~~~l-~la~~L~~r--GH~V~~~~~ 66 (477)
|+|||++.+.+-. |...... .+++.|.++ ||+|+++-.
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL 43 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDL 43 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 6799998887743 3332222 456677777 999988766
No 274
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=40.81 E-value=39 Score=35.40 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=38.7
Q ss_pred hHHHHHHHhCCcEEeccCCc-chHHHHH--HHHHcCceEEccCCCCCHHHHHHHHHHHhcC-----H----HHHHHHHHH
Q psy15582 350 QSSQEAIHFGVPMIGIPFFA-DQDTNVR--KLESMDVARFLEYENITAETLVTLMKSILYN-----E----TVYRKSQVY 417 (477)
Q Consensus 350 ~s~~Eal~~GvP~i~~P~~~-dQ~~na~--~~~~~G~g~~l~~~~~~~~~l~~al~~ll~~-----~----~~~~~a~~~ 417 (477)
-|-+||.+.|+|.|..-+.| =++.+-. .-...|+-++ ++..-+.++..+.|.+.|.+ . ..|++++++
T Consensus 484 YTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~Vv-dR~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~L 562 (633)
T PF05693_consen 484 YTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVV-DRRDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERL 562 (633)
T ss_dssp HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE--SSSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHH
T ss_pred CChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEE-eCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46899999999999887643 1111110 1123455444 44555777777777776632 1 356666666
Q ss_pred HHHh
Q psy15582 418 SKLS 421 (477)
Q Consensus 418 ~~~~ 421 (477)
++.+
T Consensus 563 S~~~ 566 (633)
T PF05693_consen 563 SDLA 566 (633)
T ss_dssp GGGG
T ss_pred HHhC
Confidence 6543
No 275
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.71 E-value=61 Score=30.25 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=23.6
Q ss_pred CceEEEEcCChhHHHHHHH----hCCcEEecc
Q psy15582 339 KVKLFIMQGGLQSSQEAIH----FGVPMIGIP 366 (477)
Q Consensus 339 ~~~~~I~hgG~~s~~Eal~----~GvP~i~~P 366 (477)
.++++|+=||-||++-|+. .++|++.+-
T Consensus 33 ~~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN 64 (259)
T PRK00561 33 GADYLFVLGGDGFFVSTAANYNCAGCKVVGIN 64 (259)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCcEEEEe
Confidence 4899999999999998875 468988774
No 276
>PRK06988 putative formyltransferase; Provisional
Probab=40.35 E-value=71 Score=30.81 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=23.9
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDP 68 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~ 68 (477)
|.||+| ++. ++ ...+..++|.++||+|..+.+.+
T Consensus 2 ~mkIvf-~Gs---~~--~a~~~L~~L~~~~~~i~~Vvt~~ 35 (312)
T PRK06988 2 KPRAVV-FAY---HN--VGVRCLQVLLARGVDVALVVTHE 35 (312)
T ss_pred CcEEEE-EeC---cH--HHHHHHHHHHhCCCCEEEEEcCC
Confidence 468888 332 33 45677888888999988777643
No 277
>KOG1387|consensus
Probab=39.91 E-value=3.7e+02 Score=26.33 Aligned_cols=101 Identities=18% Similarity=0.134 Sum_probs=56.9
Q ss_pred hhHhhhhc-CCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCC------ceEEEEecC--CC-------C------CC
Q psy15582 261 NLKDWIEG-AKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPR------HRIIWKWEE--DI-------L------PD 318 (477)
Q Consensus 261 ~l~~~l~~-~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~------~~~l~~~~~--~~-------~------~~ 318 (477)
++++.... .++...++++|-..+.++ .+.++..+-.+.+.|+ .+.+.+.+. ++ + -+
T Consensus 257 ~lks~~~te~~r~~~ll~l~Q~RPEKn--H~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~ 334 (465)
T KOG1387|consen 257 DLKSKFGTEGERENQLLSLAQFRPEKN--HKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELK 334 (465)
T ss_pred HHHHHhcccCCcceEEEEEeecCcccc--cHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcC
Confidence 44443322 256678888888776543 2345555555555442 344443332 11 0 14
Q ss_pred CCCCeEEeecCChhhhhcC-CCceEEEE-----cCChhHHHHHHHhCCcEEe
Q psy15582 319 LPSNVICRKWLPQHDILAH-PKVKLFIM-----QGGLQSSQEAIHFGVPMIG 364 (477)
Q Consensus 319 ~~~nv~i~~~vp~~~lL~h-~~~~~~I~-----hgG~~s~~Eal~~GvP~i~ 364 (477)
++++|.+...+|..++... ..+.+-|| |=|. ++.|+|++|.=.|+
T Consensus 335 i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGI-sVVEyMAAGlIpi~ 385 (465)
T KOG1387|consen 335 IPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGI-SVVEYMAAGLIPIV 385 (465)
T ss_pred CccceEEEecCCHHHHHHHhccceeehhhhhhhhcch-hHHHHHhcCceEEE
Confidence 6889999999998764321 22433332 4444 58899999975543
No 278
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=39.89 E-value=42 Score=30.13 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=24.7
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
|++|.+ +|.|++ -.+||..|.+.||+|.+.+..
T Consensus 1 m~~~~i----~GtGni--G~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 1 MMIIAI----IGTGNI--GSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred CcEEEE----eccChH--HHHHHHHHHhCCCeEEEecCC
Confidence 455655 455665 467889999999999999773
No 279
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=39.63 E-value=56 Score=31.49 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=22.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
||+| ++.+. ...+..++|.++||+|..+.+.
T Consensus 2 kIvf-~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 2 RIVF-FGTPT-----FSLPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred EEEE-ECCCH-----HHHHHHHHHHhCCCcEEEEEcC
Confidence 7877 44333 4577788999999998866653
No 280
>PRK06849 hypothetical protein; Provisional
Probab=39.58 E-value=44 Score=33.30 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=27.4
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
+++|||+ +. |.....+.+|+.|.++||+|.++...
T Consensus 3 ~~~~VLI-~G----~~~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLI-TG----ARAPAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEE-eC----CCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5678988 32 33336899999999999999988774
No 281
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=39.48 E-value=1.9e+02 Score=28.75 Aligned_cols=86 Identities=19% Similarity=0.319 Sum_probs=60.6
Q ss_pred CCeEEeecCCh----hhhhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcchHHHHHHHHHcCc-eEEccCCCCCHH
Q psy15582 321 SNVICRKWLPQ----HDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDV-ARFLEYENITAE 395 (477)
Q Consensus 321 ~nv~i~~~vp~----~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~-g~~l~~~~~~~~ 395 (477)
+++++.+ .++ ..++ .+|+++|.- =+-++.=|++.|+|.|.+-. |+.+...+++.|+ +..++...++.+
T Consensus 266 ~~i~~~~-d~~~~~~~~~l--~~~dl~Vg~-R~HsaI~al~~g~p~i~i~Y---~~K~~~l~~~~gl~~~~~~i~~~~~~ 338 (385)
T COG2327 266 AEILVSS-DEYAEELGGIL--AACDLIVGM-RLHSAIMALAFGVPAIAIAY---DPKVRGLMQDLGLPGFAIDIDPLDAE 338 (385)
T ss_pred cceEeec-chHHHHHHHHh--ccCceEEee-hhHHHHHHHhcCCCeEEEee---cHHHHHHHHHcCCCcccccCCCCchH
Confidence 5666654 222 3356 448887743 34578889999999998854 5666678888887 466777788999
Q ss_pred HHHHHHHHHhcC-HHHHHH
Q psy15582 396 TLVTLMKSILYN-ETVYRK 413 (477)
Q Consensus 396 ~l~~al~~ll~~-~~~~~~ 413 (477)
.+.+++.+.+.+ ++.+++
T Consensus 339 ~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 339 ILSAVVLERLTKLDELRER 357 (385)
T ss_pred HHHHHHHHHHhccHHHHhh
Confidence 999998888765 555554
No 282
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=39.44 E-value=1.3e+02 Score=29.01 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=27.8
Q ss_pred hhcCCCceEEEEcCChhHHHHHHHhCCcEEecc
Q psy15582 334 ILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIP 366 (477)
Q Consensus 334 lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P 366 (477)
++..-+-|++|+.++..+..-|-..|+|.+.+-
T Consensus 88 ~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 88 IIREYNPDLIISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred HHHhcCCCEEEECCchHHHHHHHhcCCCEEEEe
Confidence 444456799999999999999999999999653
No 283
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=39.01 E-value=2.5e+02 Score=24.04 Aligned_cols=36 Identities=6% Similarity=0.096 Sum_probs=29.8
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+-|.+ ++..|.|-...++.+|-..+.+|+.|.++..
T Consensus 3 G~i~v-y~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQF 38 (159)
T cd00561 3 GLIQV-YTGNGKGKTTAALGLALRALGHGYRVGVVQF 38 (159)
T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 45666 5556889999999999999999999999776
No 284
>PRK14099 glycogen synthase; Provisional
Probab=38.80 E-value=45 Score=34.42 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=27.6
Q ss_pred cccEEEEcC----CC-CCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICP----TP-SYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~----~~-~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
..|||++.+ +. .+|=-..+-+|.++|+++||+|.++.|
T Consensus 3 ~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P 45 (485)
T PRK14099 3 PLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVP 45 (485)
T ss_pred CcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 357777432 11 245556677888999999999999999
No 285
>PRK07308 flavodoxin; Validated
Probab=38.59 E-value=48 Score=27.70 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=26.0
Q ss_pred cccEEEEcCCCCCCcHHH-HHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVP-FIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~-~l~la~~L~~rGH~V~~~~~ 66 (477)
|.|+.|++.. .+||... +..|++.|.++|++|.+.-.
T Consensus 1 m~~~~IvY~S-~tGnTe~iA~~ia~~l~~~g~~~~~~~~ 38 (146)
T PRK07308 1 MALAKIVYAS-MTGNTEEIADIVADKLRELGHDVDVDEC 38 (146)
T ss_pred CceEEEEEEC-CCchHHHHHHHHHHHHHhCCCceEEEec
Confidence 4466554444 4577666 66789999999999887544
No 286
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=38.27 E-value=65 Score=26.36 Aligned_cols=36 Identities=14% Similarity=0.341 Sum_probs=23.8
Q ss_pred cEEEEcCCCCCCc--HHHHHHHHHHHHhCCCEE-EEEee
Q psy15582 31 NVLIICPTPSYSH--QVPFIAIGKELVRRGHTV-TMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH--~~~~l~la~~L~~rGH~V-~~~~~ 66 (477)
|+++++..+-+|+ ..-.+.+|+++.+.||+| .++-.
T Consensus 1 ~~~iv~~~~P~~~~~~~~al~~A~aa~~~gh~v~~vFf~ 39 (127)
T TIGR03012 1 KYTLLVTGPPYGTQAASSAYQFAQALLAKGHEIVRVFFY 39 (127)
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCcEEEEEEe
Confidence 3445455554555 445777899999999995 44443
No 287
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=38.19 E-value=1.3e+02 Score=29.08 Aligned_cols=86 Identities=9% Similarity=0.038 Sum_probs=51.3
Q ss_pred ceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCceEEEEcCCh--
Q psy15582 272 GVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGL-- 349 (477)
Q Consensus 272 ~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~-- 349 (477)
++.++.+|.+.. ..+.++.+.+|..++..+..+......+.+.+....+...++ +.+|+++..++.
T Consensus 5 RVgIVG~GnIGr----------~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l--~~iDVViIctPs~t 72 (324)
T TIGR01921 5 RAAIVGYGNLGR----------SVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHL--DDVDVLILCMGSAT 72 (324)
T ss_pred EEEEEeecHHHH----------HHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhc--cCCCEEEEcCCCcc
Confidence 566777777543 245666666778888777654322222233333333334445 568888765553
Q ss_pred --hHHHHHHHhCCcEEec-cCCc
Q psy15582 350 --QSSQEAIHFGVPMIGI-PFFA 369 (477)
Q Consensus 350 --~s~~Eal~~GvP~i~~-P~~~ 369 (477)
--..+++.+|+.+|.. |...
T Consensus 73 h~~~~~~~L~aG~NVV~s~~~h~ 95 (324)
T TIGR01921 73 DIPEQAPYFAQFANTVDSFDNHR 95 (324)
T ss_pred CHHHHHHHHHcCCCEEECCCccc
Confidence 4477889999999954 4333
No 288
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=37.98 E-value=41 Score=30.75 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=20.7
Q ss_pred CCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 37 PTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 37 ~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+..+.|- -..+||++|.++||+|+++..
T Consensus 21 tN~SSG~--iG~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 21 TNHSTGQ--LGKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred cCccchH--HHHHHHHHHHhCCCEEEEEEC
Confidence 4344443 356788999999999999875
No 289
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=37.95 E-value=46 Score=28.38 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=26.4
Q ss_pred cccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 27 VESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 27 ~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
.+.+|||| +. .|. .....++.|.+.||+|+++.++
T Consensus 11 l~~~~vlV-vG---GG~--va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVI-IG---GGK--IAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred cCCCEEEE-EC---CCH--HHHHHHHHHHhCCCEEEEEcCc
Confidence 45678888 33 344 3578899999999999999763
No 290
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=37.60 E-value=82 Score=31.29 Aligned_cols=85 Identities=15% Similarity=0.101 Sum_probs=43.2
Q ss_pred ceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCceEEEEcCChhH
Q psy15582 272 GVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQS 351 (477)
Q Consensus 272 ~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s 351 (477)
+.++|..|.... .....+.+.+.|++.+ ..+.+- ++-. .|-.+..-..-...+...++|++|.=||. |
T Consensus 30 ~r~lvvt~~~~~----~~g~~~~v~~~L~~~~-i~~~~~-~~v~-----~~p~~~~v~~~~~~~~~~~~D~IiaiGGG-S 97 (379)
T TIGR02638 30 KKALVVTDKDLI----KFGVADKVTDLLDEAG-IAYELF-DEVK-----PNPTITVVKAGVAAFKASGADYLIAIGGG-S 97 (379)
T ss_pred CEEEEEcCcchh----hccchHHHHHHHHHCC-CeEEEE-CCCC-----CCcCHHHHHHHHHHHHhcCCCEEEEeCCh-H
Confidence 344555565433 2235666777777766 655432 2111 11111100011223444568888888884 4
Q ss_pred HHHHH-------------------------HhCCcEEeccCC
Q psy15582 352 SQEAI-------------------------HFGVPMIGIPFF 368 (477)
Q Consensus 352 ~~Eal-------------------------~~GvP~i~~P~~ 368 (477)
+..+. ..++|+|.+|..
T Consensus 98 viD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 98 PIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 44333 135899999975
No 291
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=37.44 E-value=41 Score=30.88 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=27.7
Q ss_pred cEEEEcCCCCCCcH-HHHHHHHHHHHhC--CCEEEEEeecC
Q psy15582 31 NVLIICPTPSYSHQ-VPFIAIGKELVRR--GHTVTMIGTDP 68 (477)
Q Consensus 31 kIL~~~~~~~~GH~-~~~l~la~~L~~r--GH~V~~~~~~~ 68 (477)
||++ ...|.|+. .-...+++.|.++ ||+|.++.+..
T Consensus 1 ~i~~--~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~ 39 (234)
T TIGR02700 1 RIGW--GITGAGHLLVESFQVMKELKREIEELRVSTFVSRA 39 (234)
T ss_pred CeEE--EEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChh
Confidence 4554 33455666 7999999999999 99999998843
No 292
>KOG3339|consensus
Probab=36.81 E-value=63 Score=28.22 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=23.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
++++ -.|++||..=|+.|.+.|.++=-.-+++..
T Consensus 40 ~~lV--vlGSGGHT~EMlrLl~~l~~~y~~r~yI~a 73 (211)
T KOG3339|consen 40 STLV--VLGSGGHTGEMLRLLEALQDLYSPRSYIAA 73 (211)
T ss_pred eEEE--EEcCCCcHHHHHHHHHHHHhhcCceEEEEe
Confidence 4666 346889999999999999776333334433
No 293
>PRK13556 azoreductase; Provisional
Probab=36.27 E-value=53 Score=29.40 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=25.4
Q ss_pred cccEEEEcCCCCCCcHHHHHHH----HHHHHhC--CCEEEEEeec
Q psy15582 29 SANVLIICPTPSYSHQVPFIAI----GKELVRR--GHTVTMIGTD 67 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~l----a~~L~~r--GH~V~~~~~~ 67 (477)
|.|||++.+.+-.++-.-..++ ++.+.+. ||+|+++-..
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~ 45 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLY 45 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 7899997777743344433444 4466554 8999987763
No 294
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=35.95 E-value=50 Score=29.37 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=34.4
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
..+||++ .+.+|-.|-....-++..|..+|.+|+++..+
T Consensus 83 ~~~~vv~-~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~ 121 (197)
T TIGR02370 83 VLGKVVC-GVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD 121 (197)
T ss_pred CCCeEEE-EeCCCchhHHHHHHHHHHHHhCCcEEEECCCC
Confidence 4578877 78889999999999999999999999998873
No 295
>PRK10818 cell division inhibitor MinD; Provisional
Probab=35.93 E-value=61 Score=30.27 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=33.5
Q ss_pred cccE-EEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCC
Q psy15582 29 SANV-LIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPL 69 (477)
Q Consensus 29 ~~kI-L~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~ 69 (477)
|+|| .|...-||-|-..-+..||..|+++|++|.++-.+..
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~ 42 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIG 42 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5565 4444568999999999999999999999998888653
No 296
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=35.83 E-value=53 Score=26.53 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=30.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
||++ .+.++-.|-.-..-++.-|...|++|.+..+
T Consensus 1 ~vv~-~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~ 35 (122)
T cd02071 1 RILV-AKPGLDGHDRGAKVIARALRDAGFEVIYTGL 35 (122)
T ss_pred CEEE-EecCCChhHHHHHHHHHHHHHCCCEEEECCC
Confidence 5666 6778899999999999999999999998877
No 297
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=35.80 E-value=57 Score=28.04 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=28.9
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+|||++-++-|.||-.....+++.+ -|+++++|.
T Consensus 1 M~ILlle~y~ggSHk~~~~~L~~~~---~~~~~lltL 34 (168)
T PF12038_consen 1 MRILLLEPYYGGSHKQWADGLAAHS---EHEWTLLTL 34 (168)
T ss_pred CeEEEEccccccCHHHHHHHHHHhc---cCCEEEEEc
Confidence 4899989999999999988888888 678887776
No 298
>PRK13236 nitrogenase reductase; Reviewed
Probab=35.69 E-value=78 Score=30.20 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=36.8
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCC
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEP 72 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~ 72 (477)
+| |++-+..=||-|-..-...||.+|+++|++|.++-.++....
T Consensus 5 ~~-~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~ 48 (296)
T PRK13236 5 NI-RQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADS 48 (296)
T ss_pred Cc-eEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCc
Confidence 45 666667888999999999999999999999999988655443
No 299
>PRK00211 sulfur relay protein TusC; Validated
Probab=35.53 E-value=71 Score=25.79 Aligned_cols=38 Identities=0% Similarity=-0.159 Sum_probs=29.7
Q ss_pred cccEEEEcCCCCCCcHHHHHHH--HHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAI--GKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~l--a~~L~~rGH~V~~~~~ 66 (477)
|+||+|++..+-+|...-.-++ |-+++.-+++|+++-.
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~~~~v~vff~ 40 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLATSAFTEDIGVFFI 40 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcccCCeeEEEE
Confidence 6789998888877887776666 7777777889987666
No 300
>PRK10037 cell division protein; Provisional
Probab=35.46 E-value=66 Score=29.72 Aligned_cols=41 Identities=17% Similarity=0.011 Sum_probs=33.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPL 69 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~ 69 (477)
|+-|.|...=||-|-..-+..||.+|+++|++|.++-.++.
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q 41 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPD 41 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 55556645568999999999999999999999999977654
No 301
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=35.44 E-value=68 Score=27.62 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=30.6
Q ss_pred CCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCC-CCCeeEEEccc
Q psy15582 39 PSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEP-PVNYTDIDLSF 83 (477)
Q Consensus 39 ~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~-~~~~~~~~~~~ 83 (477)
|+.|++- ..++++|.++||+|+.++....+.. ..+++.+..+.
T Consensus 5 GatG~vG--~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~ 48 (183)
T PF13460_consen 5 GATGFVG--RALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDL 48 (183)
T ss_dssp TTTSHHH--HHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCT
T ss_pred CCCChHH--HHHHHHHHHCCCEEEEEecCchhcccccccccceeee
Confidence 5566664 5699999999999999998433222 56777766553
No 302
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=35.14 E-value=84 Score=29.22 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=35.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE 71 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~ 71 (477)
|..|.| +.-||-|-..-+..||..|+++|++|.++-.++...
T Consensus 1 m~~iav-~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n 42 (270)
T cd02040 1 MRQIAI-YGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKAD 42 (270)
T ss_pred CcEEEE-EeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 445666 578899999999999999999999999998876543
No 303
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=34.94 E-value=62 Score=28.22 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=28.5
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
..++++ .+.+|.|-..-+.++++++.++|+.|.|++.
T Consensus 47 ~~~l~l-~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 47 GENLIL-YGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp --EEEE-EESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred CeEEEE-EhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 344544 8888999999999999999999999988765
No 304
>PRK06835 DNA replication protein DnaC; Validated
Probab=34.94 E-value=64 Score=31.35 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=30.8
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
..+++ ++.+|.|-..=+.++|+++.++|+.|.+++.
T Consensus 184 ~~Lll-~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLF-YGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred CcEEE-ECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 44544 8888999999999999999999999988876
No 305
>PRK11579 putative oxidoreductase; Provisional
Probab=34.86 E-value=2.5e+02 Score=27.36 Aligned_cols=122 Identities=12% Similarity=0.039 Sum_probs=64.8
Q ss_pred ceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC--CCCCCeEEeecCChhhhhcCCCceEEEEcCCh
Q psy15582 272 GVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP--DLPSNVICRKWLPQHDILAHPKVKLFIMQGGL 349 (477)
Q Consensus 272 ~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~--~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~ 349 (477)
++-+|.+|.+.. . ..+.++...++++++..++.+... ..-..+. -|-+..++|.++.+|+++-.--.
T Consensus 6 rvgiiG~G~i~~------~---~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~--~~~~~~ell~~~~vD~V~I~tp~ 74 (346)
T PRK11579 6 RVGLIGYGYASK------T---FHAPLIAGTPGLELAAVSSSDATKVKADWPTVT--VVSEPQHLFNDPNIDLIVIPTPN 74 (346)
T ss_pred eEEEECCCHHHH------H---HHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCc--eeCCHHHHhcCCCCCEEEEcCCc
Confidence 455666666432 1 124455556657777766643211 0011222 23456778888889988743332
Q ss_pred ----hHHHHHHHhCCcEEec-cCCc--chH-HHHHHHHHcCceEEcc-CCCCCHHHHHHHHHHHhc
Q psy15582 350 ----QSSQEAIHFGVPMIGI-PFFA--DQD-TNVRKLESMDVARFLE-YENITAETLVTLMKSILY 406 (477)
Q Consensus 350 ----~s~~Eal~~GvP~i~~-P~~~--dQ~-~na~~~~~~G~g~~l~-~~~~~~~~l~~al~~ll~ 406 (477)
-.+.+|+.+|+++++= |+.. +|- .-.+.+++.|.-+.+. ...+++ ..+.++++++
T Consensus 75 ~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p--~~~~~k~~i~ 138 (346)
T PRK11579 75 DTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDS--DFLTLKALLA 138 (346)
T ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCH--HHHHHHHHHh
Confidence 4478899999999976 8654 322 2233344556544332 123343 2334455553
No 306
>PRK00889 adenylylsulfate kinase; Provisional
Probab=34.85 E-value=80 Score=27.16 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=33.7
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
.++++++...+|.|-..-...|++.|...|++|.++..+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 456777789999999999999999999999998888553
No 307
>CHL00175 minD septum-site determining protein; Validated
Probab=34.60 E-value=74 Score=29.95 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=34.6
Q ss_pred cccccEEEEcC-CCCCCcHHHHHHHHHHHHhCCCEEEEEeecCC
Q psy15582 27 VESANVLIICP-TPSYSHQVPFIAIGKELVRRGHTVTMIGTDPL 69 (477)
Q Consensus 27 ~~~~kIL~~~~-~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~ 69 (477)
..|+|++.+++ -||-|-..-+..||.+|+++|++|.++-.+..
T Consensus 12 ~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~ 55 (281)
T CHL00175 12 ATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIG 55 (281)
T ss_pred CCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 45777766555 57899999999999999999999988876543
No 308
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=34.30 E-value=3.8e+02 Score=24.76 Aligned_cols=76 Identities=13% Similarity=0.041 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhCCCceEEEEecCCC--CCCCCCCeEEeecCCh-hhhhcC----CCceEEEEcCChhHHHHHHHhCCc
Q psy15582 289 EDKRKAIVDSFKQFPRHRIIWKWEEDI--LPDLPSNVICRKWLPQ-HDILAH----PKVKLFIMQGGLQSSQEAIHFGVP 361 (477)
Q Consensus 289 ~~~~~~i~~al~~~~~~~~l~~~~~~~--~~~~~~nv~i~~~vp~-~~lL~h----~~~~~~I~hgG~~s~~Eal~~GvP 361 (477)
.++.+++++-+++.+ .+-+++.++-. ...-.++|+.+.--+. .+-|.. +--...|.--++.-+.||+..|+|
T Consensus 93 ~e~s~~v~~w~~~~~-v~~ii~~~g~~~~~~~e~~~v~~va~~~~~~~~l~~~~~~~~~~G~I~G~~g~ll~e~~~r~i~ 171 (244)
T COG1938 93 YEISNAVVEWAEENG-VEEVISLGGMPARLREEKPSVYGVATSEEKLEKLKDLGAEPLEEGTIVGPSGALLNECLKRGIP 171 (244)
T ss_pred HHHHHHHHHHHHHcC-CeEEEEecCCCcccccCCCceEEEecchhhhhHHhhcCCCccccceeecccHHHHHHHHHcCCC
Confidence 455555666666666 77777777432 2223345555443332 111211 111235666677889999999999
Q ss_pred EEec
Q psy15582 362 MIGI 365 (477)
Q Consensus 362 ~i~~ 365 (477)
.+++
T Consensus 172 a~~l 175 (244)
T COG1938 172 ALVL 175 (244)
T ss_pred eEEE
Confidence 8744
No 309
>PRK06851 hypothetical protein; Provisional
Probab=34.07 E-value=1e+02 Score=30.40 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=35.1
Q ss_pred cccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 27 VESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 27 ~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
..+.|+.++...||.|...-+..+++.+.++|.+|.++-.
T Consensus 27 ~~~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~ 66 (367)
T PRK06851 27 DGANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHC 66 (367)
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 3577888878889999999999999999999999987655
No 310
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=33.63 E-value=1.4e+02 Score=29.44 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=62.2
Q ss_pred HhhccccEEEEecCcc-ccCCcCCCCceEEeCccccCCCCCCChhhHhhhhc-CCCceEEEecCCcccCCcccHHHHHHH
Q psy15582 218 QLEENKTLLFISTSWL-LTYPRPVFPNTILLGPIHLNNPKPLPQNLKDWIEG-AKDGVIYFSLGTNMQSASLQEDKRKAI 295 (477)
Q Consensus 218 ~~~~~~~~~l~~s~~~-l~~~~~~~~~~~~vG~~~~~~~~~~~~~l~~~l~~-~~~~~V~vs~Gs~~~~~~~~~~~~~~i 295 (477)
|-++.++...+..+++ +++.+....++...|++...+ .-.-++..... .++++-++.+-.+. .+..+..-
T Consensus 292 dnLk~G~k~~vdGPYG~F~~~~g~~~QVWIAGGIGITP---Fis~l~~l~~~~s~~~V~L~Y~~~n~-----e~~~y~~e 363 (438)
T COG4097 292 DNLKVGTKLEVDGPYGKFDFERGLNTQVWIAGGIGITP---FISMLFTLAERKSDPPVHLFYCSRNW-----EEALYAEE 363 (438)
T ss_pred HhccCCceEEEecCcceeecccCCcccEEEecCcCcch---HHHHHHhhcccccCCceEEEEEecCC-----chhHHHHH
Confidence 3345566666666554 666666666888888998774 11112211121 13343333322222 34444444
Q ss_pred HHHHhh-CCC--ceEEEEecCCCCCCCCCCeEEeecCChhhhhcC---CCceEEEEcCChhHHHHHHHhCCc
Q psy15582 296 VDSFKQ-FPR--HRIIWKWEEDILPDLPSNVICRKWLPQHDILAH---PKVKLFIMQGGLQSSQEAIHFGVP 361 (477)
Q Consensus 296 ~~al~~-~~~--~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h---~~~~~~I~hgG~~s~~Eal~~GvP 361 (477)
++++.+ .+. .+++++.+ -++++|.++..+ ++.. -|--||.-.+++++.-..-
T Consensus 364 Lr~~~qkl~~~~lHiiDSs~-------------~g~l~~e~ler~~~~~~~~-sv~fCGP~~m~dsL~r~l~ 421 (438)
T COG4097 364 LRALAQKLPNVVLHIIDSSK-------------DGYLDQEDLERYPDRPRTR-SVFFCGPIKMMDSLRRDLK 421 (438)
T ss_pred HHHHHhcCCCeEEEEecCCC-------------CCccCHHHhhccccccCcc-eEEEEcCHHHHHHHHHHHH
Confidence 555554 331 23333332 245667776654 2220 2456788889988875433
No 311
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.61 E-value=78 Score=25.38 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=29.4
Q ss_pred cccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCCCCCeeEE
Q psy15582 27 VESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEPPVNYTDI 79 (477)
Q Consensus 27 ~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~~~~~~~~ 79 (477)
...+||.= +..| ....+|++|+++|.+|+..-....... +|+.++
T Consensus 12 ~~~gkVvE-VGiG------~~~~VA~~L~e~g~dv~atDI~~~~a~-~g~~~v 56 (129)
T COG1255 12 NARGKVVE-VGIG------FFLDVAKRLAERGFDVLATDINEKTAP-EGLRFV 56 (129)
T ss_pred hcCCcEEE-Eccc------hHHHHHHHHHHcCCcEEEEecccccCc-ccceEE
Confidence 34457754 4433 478999999999988776655444333 666654
No 312
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=33.51 E-value=94 Score=29.23 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=36.4
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEPP 73 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~~ 73 (477)
|.+|.| +.=||-|-..-+..||.+|+++|++|.++-.++.....
T Consensus 1 ~~~i~~-~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t 44 (279)
T PRK13230 1 MRKFCF-YGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCT 44 (279)
T ss_pred CcEEEE-ECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCccccc
Confidence 455656 57889999999999999999999999999887665443
No 313
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=33.39 E-value=95 Score=26.53 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=33.1
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC
Q psy15582 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK 70 (477)
Q Consensus 32 IL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~ 70 (477)
|.+..+-||-|-..-...||..|+++|+.|.++-.+...
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~ 40 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYG 40 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 556566789999999999999999999999998876543
No 314
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=33.37 E-value=2.3e+02 Score=23.58 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=21.6
Q ss_pred CCceEEEEcCCh------hHHHHHHHhCCcEEecc
Q psy15582 338 PKVKLFIMQGGL------QSSQEAIHFGVPMIGIP 366 (477)
Q Consensus 338 ~~~~~~I~hgG~------~s~~Eal~~GvP~i~~P 366 (477)
.+..+++.|+|. +.+.+|...++|+|++.
T Consensus 58 ~~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~ 92 (155)
T cd07035 58 GKPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVIT 92 (155)
T ss_pred CCCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 346677777554 45788899999999885
No 315
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=33.34 E-value=93 Score=29.65 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=36.5
Q ss_pred cccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCC
Q psy15582 27 VESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEP 72 (477)
Q Consensus 27 ~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~ 72 (477)
++|.+|-| ..-||-|-..-+..||.+|+++|.+|.++-.++....
T Consensus 2 ~~~~~iai-~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~ 46 (295)
T PRK13234 2 SKLRQIAF-YGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADS 46 (295)
T ss_pred CcceEEEE-ECCCCccHHHHHHHHHHHHHHCCCeEEEEeccccccc
Confidence 45755656 5778999999999999999999999999987655443
No 316
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=33.34 E-value=73 Score=24.51 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=26.6
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
++.|||+++..|-.+. .-...+-+.+.++|.++.+...
T Consensus 2 ~~~~ILl~C~~G~sSS-~l~~k~~~~~~~~gi~~~v~a~ 39 (95)
T TIGR00853 2 NETNILLLCAAGMSTS-LLVNKMNKAAEEYGVPVKIAAG 39 (95)
T ss_pred CccEEEEECCCchhHH-HHHHHHHHHHHHCCCcEEEEEe
Confidence 4679999555543334 3557788888889999877666
No 317
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=33.09 E-value=94 Score=30.23 Aligned_cols=43 Identities=16% Similarity=0.369 Sum_probs=36.2
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK 70 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~ 70 (477)
+..||+.+++-+|.|-..-...||..|+++|++|.++..+...
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~ 71 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKS 71 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecc
Confidence 4566666578889999999999999999999999999886544
No 318
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=32.83 E-value=78 Score=28.05 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=32.6
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+..++.++...+|.|-..-+..+++.+.++|.+|.++++
T Consensus 16 ~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 16 SGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 455787767889999999999999999999999999888
No 319
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=32.75 E-value=99 Score=26.81 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=31.8
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCC
Q psy15582 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPL 69 (477)
Q Consensus 32 IL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~ 69 (477)
|.|..+-||-|-..-+..||..|+++|++|.++-.+..
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~ 38 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQ 38 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTT
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcc
Confidence 45656678999999999999999999999999988543
No 320
>PRK09271 flavodoxin; Provisional
Probab=32.60 E-value=73 Score=27.15 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=25.1
Q ss_pred cEEEEcCCCCCCcHHH-HHHHHHHHHhCCCEEEEEee
Q psy15582 31 NVLIICPTPSYSHQVP-FIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~-~l~la~~L~~rGH~V~~~~~ 66 (477)
||+|++.. .+|+... +..|++.|.++|++|.+.-.
T Consensus 2 kv~IvY~S-~tGnTe~~A~~ia~~l~~~g~~v~~~~~ 37 (160)
T PRK09271 2 RILLAYAS-LSGNTREVAREIEERCEEAGHEVDWVET 37 (160)
T ss_pred eEEEEEEc-CCchHHHHHHHHHHHHHhCCCeeEEEec
Confidence 77775655 4466555 66778999999999986543
No 321
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=32.35 E-value=1.3e+02 Score=25.85 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=28.2
Q ss_pred ccccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 26 TVESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 26 ~~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
.....+|++++..+ ..=--.+.+|+.|.++|++|+++..
T Consensus 22 ~~~~~~v~il~G~G--nNGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 22 SPKGPRVLILCGPG--NNGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp CCTT-EEEEEE-SS--HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCeEEEEECCC--CChHHHHHHHHHHHHCCCeEEEEEE
Confidence 45677888855432 4445678999999999999999555
No 322
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=32.34 E-value=1.2e+02 Score=29.83 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=22.0
Q ss_pred hcCCCceEEEEcCChhHHHHHHH----------------------hCCcEEeccCC
Q psy15582 335 LAHPKVKLFIMQGGLQSSQEAIH----------------------FGVPMIGIPFF 368 (477)
Q Consensus 335 L~h~~~~~~I~hgG~~s~~Eal~----------------------~GvP~i~~P~~ 368 (477)
+...++|++|.=||. |+..+.- .++|+|.+|..
T Consensus 79 ~~~~~~D~IIavGGG-SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 79 AKKFNADFVIGIGGG-SPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred HHhcCCCEEEEeCCc-hHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 333568889988885 4333321 27899999975
No 323
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=32.26 E-value=90 Score=25.47 Aligned_cols=40 Identities=25% Similarity=0.536 Sum_probs=29.8
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHh-hCCCceEEEEecC
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFK-QFPRHRIIWKWEE 313 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~-~~~~~~~l~~~~~ 313 (477)
+.++++++||... -..+.+..+.+.++ ..|+..+-|.+..
T Consensus 1 ~aillv~fGS~~~---~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 1 KAILLVSFGTSYP---TAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred CeEEEEeCCCCCH---HHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 3689999999887 24667888888884 4576778777763
No 324
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=32.14 E-value=1.1e+02 Score=27.45 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=27.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
..+|++++..+.. =-=.+..|+.|..+|++|+++..
T Consensus 49 ~~~v~vlcG~GnN--GGDG~VaAR~L~~~G~~V~v~~~ 84 (203)
T COG0062 49 ARRVLVLCGPGNN--GGDGLVAARHLKAAGYAVTVLLL 84 (203)
T ss_pred CCEEEEEECCCCc--cHHHHHHHHHHHhCCCceEEEEe
Confidence 6679885554432 23467889999999999999886
No 325
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=31.95 E-value=91 Score=22.99 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=26.9
Q ss_pred cCCCCCCcHHHHHHHHHHHHhCCCEEEEEe
Q psy15582 36 CPTPSYSHQVPFIAIGKELVRRGHTVTMIG 65 (477)
Q Consensus 36 ~~~~~~GH~~~~l~la~~L~~rGH~V~~~~ 65 (477)
...+|.|-..-...+|..|++.|++|.++.
T Consensus 5 ~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 5 TGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 666788999999999999999999998877
No 326
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=31.80 E-value=1.5e+02 Score=29.40 Aligned_cols=78 Identities=6% Similarity=0.047 Sum_probs=35.6
Q ss_pred hHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCce
Q psy15582 262 LKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVK 341 (477)
Q Consensus 262 l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~ 341 (477)
+.+.+...+.+.++|..|.... .....+.+.+.+++.+ ..+.+-.+-... |..-.+.. -.......+++
T Consensus 19 l~~~l~~~g~~~~livt~~~~~----~~~~~~~v~~~L~~~~-~~~~~~~~v~~~---p~~~~v~~---~~~~~~~~~~d 87 (377)
T cd08188 19 AGRYARRLGAKKVLLVSDPGVI----KAGWVDRVIESLEEAG-LEYVVFSDVSPN---PRDEEVMA---GAELYLENGCD 87 (377)
T ss_pred HHHHHHHcCCCeEEEEeCcchh----hCccHHHHHHHHHHcC-CeEEEeCCCCCC---CCHHHHHH---HHHHHHhcCCC
Confidence 3334433232344444555433 1234566777777766 555432221110 10000111 12234445789
Q ss_pred EEEEcCChh
Q psy15582 342 LFIMQGGLQ 350 (477)
Q Consensus 342 ~~I~hgG~~ 350 (477)
++|.=||..
T Consensus 88 ~IIaiGGGs 96 (377)
T cd08188 88 VIIAVGGGS 96 (377)
T ss_pred EEEEeCCch
Confidence 999998853
No 327
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=31.80 E-value=1.9e+02 Score=22.22 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=33.4
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEe--ecCCCCCCCCeeEEE
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIG--TDPLKEPPVNYTDID 80 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~--~~~~~~~~~~~~~~~ 80 (477)
|.|||+.+..|-.+=..--..+-+.|.++|.++++-. .+.......+.+.+-
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv 54 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKALTDGADIIV 54 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEecccccCCCcccEEE
Confidence 5799997666644444555678889999997544443 355555556665543
No 328
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=31.73 E-value=79 Score=28.08 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=25.7
Q ss_pred cEEEEcCCCCCCcHHHH-HHHHHHHHhC-CCEEEEEee
Q psy15582 31 NVLIICPTPSYSHQVPF-IAIGKELVRR-GHTVTMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~-l~la~~L~~r-GH~V~~~~~ 66 (477)
||+|++... +||...+ ..+++.+.+. |++|++.-.
T Consensus 2 kilIiY~S~-~G~T~~lA~~ia~g~~~~~g~ev~~~~v 38 (197)
T TIGR01755 2 KVLVLYYSM-YGHIETMARAVAEGAREVDGAEVVVKRV 38 (197)
T ss_pred eEEEEEeCC-CCHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 687865555 7998884 5567778775 999987764
No 329
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=31.64 E-value=99 Score=28.96 Aligned_cols=41 Identities=22% Similarity=0.424 Sum_probs=26.6
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhh-CCCceEEEEecC
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQ-FPRHRIIWKWEE 313 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~-~~~~~~l~~~~~ 313 (477)
+.+++++|||..... ....+..+.+.+++ .||+.+.|+++.
T Consensus 1 KAIllvsFGTs~~~a--r~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 1 KAILLVSFGTSYPEA--REKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEEE---S-CCC--CHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred CEEEEEeCCCCCHHH--HHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 357999999988743 34477777777754 478999999985
No 330
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=31.41 E-value=82 Score=28.78 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=34.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPL 69 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~ 69 (477)
|..|.|..+-||-|-..-+..||..|+++|++|.++-.+..
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 34456655578999999999999999999999999988753
No 331
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=31.35 E-value=94 Score=31.55 Aligned_cols=41 Identities=7% Similarity=0.267 Sum_probs=35.1
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK 70 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~ 70 (477)
++++++++.+|.|-..-+..||..|.++|+.|.+++.+..+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 45555589999999999999999999999999999886543
No 332
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=31.03 E-value=93 Score=25.95 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 32 IL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
|.|+.+.++-|=..-+..+|..|+++|++|.++-.+
T Consensus 3 i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~ 38 (157)
T PF13614_consen 3 IAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFD 38 (157)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 345455788999999999999999999998777764
No 333
>PRK10867 signal recognition particle protein; Provisional
Probab=30.96 E-value=92 Score=31.59 Aligned_cols=43 Identities=12% Similarity=0.209 Sum_probs=36.9
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhC-CCEEEEEeecCCCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRR-GHTVTMIGTDPLKE 71 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~r-GH~V~~~~~~~~~~ 71 (477)
..+++++++.+|.|-..-+..||..|+++ |+.|.+++.+..+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 35676668999999999999999999999 99999999976543
No 334
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=30.73 E-value=1.4e+02 Score=29.82 Aligned_cols=68 Identities=9% Similarity=-0.049 Sum_probs=32.1
Q ss_pred ceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCC-hhhhhcCCCceEEEEcCChh
Q psy15582 272 GVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLP-QHDILAHPKVKLFIMQGGLQ 350 (477)
Q Consensus 272 ~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp-~~~lL~h~~~~~~I~hgG~~ 350 (477)
+.++|..|.... ....++.+.+.|++.+ ..+.+-.+-. .|-.+.. +. -.++....++|++|.=||..
T Consensus 50 ~~~lvv~~~~~~----~~g~~~~v~~~L~~~g-i~~~~~~~v~------~~P~~~~-v~~~~~~~r~~~~D~IiavGGGS 117 (395)
T PRK15454 50 KHLFVMADSFLH----QAGMTAGLTRSLAVKG-IAMTLWPCPV------GEPCITD-VCAAVAQLRESGCDGVIAFGGGS 117 (395)
T ss_pred CEEEEEcCcchh----hCccHHHHHHHHHHcC-CeEEEECCCC------CCcCHHH-HHHHHHHHHhcCcCEEEEeCChH
Confidence 444444454333 2345566777777766 5543221111 0111110 11 12234445788888888854
Q ss_pred H
Q psy15582 351 S 351 (477)
Q Consensus 351 s 351 (477)
+
T Consensus 118 ~ 118 (395)
T PRK15454 118 V 118 (395)
T ss_pred H
Confidence 4
No 335
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=30.65 E-value=69 Score=28.94 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=34.2
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+.+||++ .+.+|-.|-....-++-.|..+|++|+++..
T Consensus 87 ~~~~vvl-~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~ 124 (213)
T cd02069 87 SKGKIVL-ATVKGDVHDIGKNLVGVILSNNGYEVIDLGV 124 (213)
T ss_pred CCCeEEE-EeCCCchhHHHHHHHHHHHHhCCCEEEECCC
Confidence 5678887 7788999999999999999999999999887
No 336
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=30.57 E-value=98 Score=28.39 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=35.4
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE 71 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~ 71 (477)
|.+|-+ +.-+|-|--.-...++.+|++.||+|.++.-++...
T Consensus 1 mr~iAi-YGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaD 42 (278)
T COG1348 1 MRQIAI-YGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKAD 42 (278)
T ss_pred CceEEE-ecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcc
Confidence 567777 788999999999999999999999998887765443
No 337
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=30.50 E-value=1.4e+02 Score=30.01 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCEEEEEeec
Q psy15582 46 PFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 46 ~~l~la~~L~~rGH~V~~~~~~ 67 (477)
-..++|++|.++|++|+++...
T Consensus 216 ~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 216 MGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred HHHHHHHHHHHCCCEEEEeCCC
Confidence 4678999999999999998763
No 338
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=30.38 E-value=90 Score=31.57 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=35.9
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK 70 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~ 70 (477)
.+|+.++..+|.|-..-+..||..|.++|+.|.+++.+..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 46666689999999999999999999999999999987655
No 339
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=30.38 E-value=1.1e+02 Score=27.92 Aligned_cols=43 Identities=9% Similarity=0.133 Sum_probs=35.2
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE 71 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~ 71 (477)
|..|.|...=||-|-..-...||..|+++|..|.++-.++...
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s 43 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRP 43 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 4456665556899999999999999999999999998876543
No 340
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=30.19 E-value=1e+02 Score=28.06 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=29.5
Q ss_pred CChhHHHHHHHhCCcEEeccCCc--chHHHHHHHHHcCceEEc
Q psy15582 347 GGLQSSQEAIHFGVPMIGIPFFA--DQDTNVRKLESMDVARFL 387 (477)
Q Consensus 347 gG~~s~~Eal~~GvP~i~~P~~~--dQ~~na~~~~~~G~g~~l 387 (477)
|...|..+|+..|+|+.++|-.. .+..-+..+.+.|+....
T Consensus 169 Gtl~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~GA~~i~ 211 (220)
T TIGR00732 169 GALITARYALEQGREVFAYPGDLNSPESDGCHKLIEQGAALIT 211 (220)
T ss_pred chHHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHCCCEEEC
Confidence 34577888899999999998543 345556667788965544
No 341
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=29.97 E-value=2.2e+02 Score=30.13 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=22.7
Q ss_pred CCceEEEEcCCh------hHHHHHHHhCCcEEecc
Q psy15582 338 PKVKLFIMQGGL------QSSQEAIHFGVPMIGIP 366 (477)
Q Consensus 338 ~~~~~~I~hgG~------~s~~Eal~~GvP~i~~P 366 (477)
.+..++++|.|- +.+.||.+.++|+|++.
T Consensus 62 g~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 62 GKVGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 346777888665 45899999999999874
No 342
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=29.80 E-value=94 Score=28.42 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=31.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+++.++...+.|-..-+..|++.|.++|+.|-++-.
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 566657778899999999999999999999999865
No 343
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.70 E-value=1.1e+02 Score=25.05 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=28.7
Q ss_pred cccEEEEcCCCC-CCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPS-YSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~-~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
++|+|+....|. .-.+.-.+=+...|.++|.+|+++..
T Consensus 2 tgkvlv~lGCPeiP~qissaiYls~klkkkgf~v~Vaat 40 (148)
T COG4081 2 TGKVLVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAAT 40 (148)
T ss_pred CceEEEEecCCCCCccchHHHHHHHHhhccCccEEEecC
Confidence 457777666664 34455566678899999999999988
No 344
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=29.65 E-value=1.7e+02 Score=28.05 Aligned_cols=48 Identities=25% Similarity=0.280 Sum_probs=29.0
Q ss_pred hhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCC
Q psy15582 261 NLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEED 314 (477)
Q Consensus 261 ~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~ 314 (477)
.+..|... .+++ +||.-.......+..+.+++.+++++ .+.++.++++
T Consensus 54 ~v~~~~~~--gGt~---LgtsR~~~~~~~~~~~~~~~~l~~~~-Id~Li~IGGd 101 (301)
T TIGR02482 54 NVSGIIHR--GGTI---LGTARCPEFKTEEGRQKAVENLKKLG-IEGLVVIGGD 101 (301)
T ss_pred HHhhHHhC--CCce---eccCCCCccCCHHHHHHHHHHHHHcC-CCEEEEeCCc
Confidence 44455544 4443 35554322224677888888998888 7777766664
No 345
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=29.64 E-value=1.6e+02 Score=29.24 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=46.6
Q ss_pred hhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCCh-hhhhcCCC
Q psy15582 261 NLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQ-HDILAHPK 339 (477)
Q Consensus 261 ~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~-~~lL~h~~ 339 (477)
++.+++...+.+.++|..|.... .....+.+.+.+++.+ ..+.+ +.+-... | ... -+.. ...+...+
T Consensus 16 ~l~~~l~~~~~~~~livt~~~~~----~~~~~~~v~~~L~~~~-~~~~~-~~~v~~~--p---~~~-~v~~~~~~~~~~~ 83 (376)
T cd08193 16 RLGELLAALGAKRVLVVTDPGIL----KAGLIDPLLASLEAAG-IEVTV-FDDVEAD--P---PEA-VVEAAVEAARAAG 83 (376)
T ss_pred HHHHHHHHcCCCeEEEEcCcchh----hCccHHHHHHHHHHcC-CeEEE-ECCCCCC--c---CHH-HHHHHHHHHHhcC
Confidence 34444443232345555565433 2334566777777766 55433 2211100 0 000 0111 12233346
Q ss_pred ceEEEEcCChhHHHHH--HH--------------------hCCcEEeccCC
Q psy15582 340 VKLFIMQGGLQSSQEA--IH--------------------FGVPMIGIPFF 368 (477)
Q Consensus 340 ~~~~I~hgG~~s~~Ea--l~--------------------~GvP~i~~P~~ 368 (477)
+|++|.=||...+--| ++ .++|+|.+|..
T Consensus 84 ~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 134 (376)
T cd08193 84 ADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTT 134 (376)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCC
Confidence 8999999885432221 11 27899999975
No 346
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=29.57 E-value=7.4 Score=21.36 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=14.0
Q ss_pred ChhHHHHHHHhCCcEEec
Q psy15582 348 GLQSSQEAIHFGVPMIGI 365 (477)
Q Consensus 348 G~~s~~Eal~~GvP~i~~ 365 (477)
|.|++.-+++.|.|.++-
T Consensus 1 gIGa~Lkvla~~LP~lIS 18 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLIS 18 (26)
T ss_dssp -HHHHHHHHHTHHHHHHH
T ss_pred ChhHHHHHHHhcChHHHH
Confidence 678899999999987653
No 347
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=29.49 E-value=1.4e+02 Score=29.75 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=47.6
Q ss_pred hHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCCh-hhhhcCCCc
Q psy15582 262 LKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQ-HDILAHPKV 340 (477)
Q Consensus 262 l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~-~~lL~h~~~ 340 (477)
+.+.+...+.+.++|..|.... .....+.+.+.+++.+ ..+.+- .+-. .|-.+ +-+.. ...+...++
T Consensus 21 l~~~~~~~g~~~~lvvtd~~~~----~~g~~~~v~~~L~~~g-~~~~~~-~~v~-----~~p~~-~~v~~~~~~~~~~~~ 88 (382)
T PRK10624 21 LTDEVKRRGFKKALIVTDKTLV----KCGVVAKVTDVLDAAG-LAYEIY-DGVK-----PNPTI-EVVKEGVEVFKASGA 88 (382)
T ss_pred HHHHHHhcCCCEEEEEeCcchh----hCcchHHHHHHHHHCC-CeEEEe-CCCC-----CCcCH-HHHHHHHHHHHhcCC
Confidence 3334433232445555565433 2345667777887766 554432 2111 11111 11111 223333568
Q ss_pred eEEEEcCChhHHHHHH---H----------------------hCCcEEeccCC
Q psy15582 341 KLFIMQGGLQSSQEAI---H----------------------FGVPMIGIPFF 368 (477)
Q Consensus 341 ~~~I~hgG~~s~~Eal---~----------------------~GvP~i~~P~~ 368 (477)
|++|.=||. |+..+. + .++|.|.+|..
T Consensus 89 D~IIaiGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT 140 (382)
T PRK10624 89 DYLIAIGGG-SPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTT 140 (382)
T ss_pred CEEEEeCCh-HHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCC
Confidence 999988885 433332 1 25899999975
No 348
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=29.42 E-value=97 Score=29.05 Aligned_cols=35 Identities=9% Similarity=0.082 Sum_probs=24.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK 70 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~ 70 (477)
+||| + |+.|.+- ..+++.|.++||+|+.++.....
T Consensus 1 ~ilV-t--GatG~iG--~~vv~~L~~~g~~V~~~~R~~~~ 35 (285)
T TIGR03649 1 TILL-T--GGTGKTA--SRIARLLQAASVPFLVASRSSSS 35 (285)
T ss_pred CEEE-E--cCCChHH--HHHHHHHHhCCCcEEEEeCCCcc
Confidence 4555 2 5566654 56778899999999999885443
No 349
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=29.38 E-value=90 Score=28.12 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=33.1
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC
Q psy15582 33 LIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK 70 (477)
Q Consensus 33 L~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~ 70 (477)
+++.+.+|.|-..-...+|..++++|++|.++..+...
T Consensus 2 ~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~ 39 (217)
T cd02035 2 IFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAH 39 (217)
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCc
Confidence 45577889999999999999999999999999987655
No 350
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=29.36 E-value=52 Score=31.23 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=37.1
Q ss_pred CCceEEEEcCChhHHHHHHHh----CCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHHhc
Q psy15582 338 PKVKLFIMQGGLQSSQEAIHF----GVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILY 406 (477)
Q Consensus 338 ~~~~~~I~hgG~~s~~Eal~~----GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~ll~ 406 (477)
..+|++|+-||-||+..+... ++|++.++.. . .|.. ..++++++.+++.++++
T Consensus 75 ~~~D~ii~lGGDGT~L~~~~~~~~~~~Pilgin~G-----------~--lgfl---~~~~~~~~~~~l~~~~~ 131 (285)
T PF01513_consen 75 EGVDLIIVLGGDGTFLRAARLFGDYDIPILGINTG-----------T--LGFL---TEFEPEDIEEALEKILA 131 (285)
T ss_dssp CCSSEEEEEESHHHHHHHHHHCTTST-EEEEEESS-----------S--STSS---SSEEGCGHHHHHHHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHHhccCCCcEEeecCC-----------C--cccc---ccCCHHHHHHHHHHHhc
Confidence 679999999999999999873 6789988741 1 1111 23356777777777775
No 351
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=29.20 E-value=1.2e+02 Score=28.75 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=35.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCCC
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEPP 73 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~~ 73 (477)
||.| +.=||-|-..-+..||.+|+++|++|.++-.++.....
T Consensus 2 ~ia~-~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t 43 (290)
T CHL00072 2 KLAV-YGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDST 43 (290)
T ss_pred eEEE-ECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCccc
Confidence 5766 77899999999999999999999999999887665443
No 352
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=28.87 E-value=94 Score=29.13 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=33.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHh-CCCEEEEEeecCCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVR-RGHTVTMIGTDPLK 70 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~-rGH~V~~~~~~~~~ 70 (477)
|+||+.+..-||-|-..-+..||.+|++ +|++|.++-.++..
T Consensus 1 M~~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~ 43 (275)
T PRK13233 1 MTRKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKA 43 (275)
T ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCc
Confidence 5566554567889999999999999997 69999988776554
No 353
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.85 E-value=1.3e+02 Score=30.03 Aligned_cols=44 Identities=16% Similarity=0.381 Sum_probs=37.0
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE 71 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~ 71 (477)
...+|+.+++..|.|-..-...||..+.++|+.|.+++.+..+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 45677776887899999999999999999999999999976543
No 354
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=28.78 E-value=3.8e+02 Score=26.34 Aligned_cols=93 Identities=12% Similarity=0.112 Sum_probs=62.6
Q ss_pred CeEEeecCChhhhhcCCCceEEEEcCChh----HHHHHHHhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHH
Q psy15582 322 NVICRKWLPQHDILAHPKVKLFIMQGGLQ----SSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETL 397 (477)
Q Consensus 322 nv~i~~~vp~~~lL~h~~~~~~I~hgG~~----s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l 397 (477)
...+.+..+-.+.|. ..+|++|+|==-| ...|+++-|=|.| +|+..+.+ +|-.-+ +++..+=
T Consensus 254 kasfegR~~~p~fla-~~tD~VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l~d--~GYYY~--~fD~~~G 319 (364)
T PF10933_consen 254 KASFEGRFDFPDFLA-QHTDAVVSHQWENPLNYLYYDALYGGYPLV---------HNSPLLKD--VGYYYP--DFDAFEG 319 (364)
T ss_pred eeEEeeecChHHHHH-hCCCEEEeccccchhhHHHHHHHhcCCCcc---------cCcchhcc--cCcCCC--CccHHHH
Confidence 345555556555555 3599999994333 3689999999988 56666665 777766 4455555
Q ss_pred HHHHHHHhcC-----HHHHHHHHHHHHHhhcCCCChHH
Q psy15582 398 VTLMKSILYN-----ETVYRKSQVYSKLSNTQMMSPKD 430 (477)
Q Consensus 398 ~~al~~ll~~-----~~~~~~a~~~~~~~~~~~~~~~~ 430 (477)
.++|.+.+.+ ++|+++++++-..+.. .++..
T Consensus 320 ~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~p--~n~~n 355 (364)
T PF10933_consen 320 ARQLLRAIREHDADLDAYRARARRLLDRLSP--ENPAN 355 (364)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhhCC--CCHHH
Confidence 5555555532 6899999999888876 45443
No 355
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=28.72 E-value=1.1e+02 Score=23.99 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=39.7
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecC--CCCCCCCeeEEEcccchhh
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDP--LKEPPVNYTDIDLSFSYKY 87 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~--~~~~~~~~~~~~~~~~~~~ 87 (477)
|.|||+ +|..|.+--.-...+-++..++|-++++-.... ......+++.+.+.+.-.+
T Consensus 1 Mk~IlL-vC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~~e~~~~~~~~DvvLlGPQv~y 60 (102)
T COG1440 1 MKKILL-VCAAGMSTSLLVTKMKKAAESKGKDVTIEAYSETELSEYIDNADVVLLGPQVRY 60 (102)
T ss_pred CceEEE-EecCCCcHHHHHHHHHHHHHhCCCceEEEEechhHHHHhhhcCCEEEEChHHHH
Confidence 679988 676777776777777788888999998866532 2233457777777654333
No 356
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=28.56 E-value=95 Score=29.68 Aligned_cols=37 Identities=27% Similarity=0.220 Sum_probs=29.0
Q ss_pred cEEEEcCCCCCCc---HHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 31 NVLIICPTPSYSH---QVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 31 kIL~~~~~~~~GH---~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
||.+++...+.=| +.-...+.++|.++||+|.++...
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~ 40 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDID 40 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEeec
Confidence 5667666666666 457888999999999999988774
No 357
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=28.53 E-value=70 Score=22.71 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCEEEEEee
Q psy15582 47 FIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 47 ~l~la~~L~~rGH~V~~~~~ 66 (477)
-+..|..|+++|++|+++=.
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~ 27 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEK 27 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHHHCCCcEEEEec
Confidence 46788999999999999876
No 358
>PLN02240 UDP-glucose 4-epimerase
Probab=28.33 E-value=81 Score=30.61 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=24.0
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
++|||| + |+.|.+ ...+++.|.++||+|+.+..
T Consensus 5 ~~~vlI-t--GatG~i--G~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 5 GRTILV-T--GGAGYI--GSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCEEEE-E--CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 357766 2 455666 55678999999999988763
No 359
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=28.33 E-value=1.2e+02 Score=28.25 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=35.5
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecC
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDP 68 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~ 68 (477)
...++.++...||.|...-.+..+.+.+++|..|.+++.+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 45555555899999999999999999999999999999943
No 360
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=28.03 E-value=1.2e+02 Score=28.76 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=33.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhC-C-CEEEEEeecC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRR-G-HTVTMIGTDP 68 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~r-G-H~V~~~~~~~ 68 (477)
.++++.++...|.|-..-...||..+..+ | +.|.+++.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 45576668888999999999999999987 5 9999999864
No 361
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=27.88 E-value=1.2e+02 Score=25.18 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=29.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
|.-+++..+..--+.+..-+|...+.+|+||+++.+
T Consensus 4 k~~IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~T 39 (137)
T COG2210 4 KLGIILASGTLDKAYAALIIASGAAAMGYEVTVFFT 39 (137)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 333435667788899999999999999999999888
No 362
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=27.86 E-value=2e+02 Score=24.51 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=30.4
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
...|||| +. ..=++.+-+.||++|.++|-+|.|-++
T Consensus 56 ~~~~vLV-LG--TgEfMy~Pl~lA~~Le~~g~~V~~qST 91 (155)
T PF12500_consen 56 PGERVLV-LG--TGEFMYLPLLLAEELEQAGADVRYQST 91 (155)
T ss_pred CCCcEEE-Ec--cchHHHHHHHHHHHHHhcCCceEEeCC
Confidence 5579999 44 445889999999999999999999888
No 363
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=27.81 E-value=1.5e+02 Score=27.77 Aligned_cols=45 Identities=27% Similarity=0.337 Sum_probs=32.7
Q ss_pred ccccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC
Q psy15582 26 TVESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE 71 (477)
Q Consensus 26 ~~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~ 71 (477)
+.++. ++-+...||-|--.-.-+|++.|.++||.|-++.-++...
T Consensus 26 ~g~a~-~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp 70 (266)
T PF03308_consen 26 TGRAH-VIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP 70 (266)
T ss_dssp TT-SE-EEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG
T ss_pred cCCce-EEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC
Confidence 34544 4455889999999999999999999999999999865443
No 364
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=27.79 E-value=4.1e+02 Score=23.20 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=31.6
Q ss_pred HHh--CCcEEeccCCc----ch---HHHHHHHHHcCceEEccCC-----------C-CCHHHHHHHHHHHh
Q psy15582 356 IHF--GVPMIGIPFFA----DQ---DTNVRKLESMDVARFLEYE-----------N-ITAETLVTLMKSIL 405 (477)
Q Consensus 356 l~~--GvP~i~~P~~~----dQ---~~na~~~~~~G~g~~l~~~-----------~-~~~~~l~~al~~ll 405 (477)
++. ++|+++.|-.. +. ..|..++.+.|+-+.-+.. + -+++++.+.+.+.+
T Consensus 108 ~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~ 178 (182)
T PRK07313 108 LALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACGDEGYGALADIETILETIENTL 178 (182)
T ss_pred HHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHh
Confidence 455 89999999633 22 5677888888876554331 1 25566666666554
No 365
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=27.78 E-value=87 Score=29.81 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=28.7
Q ss_pred ccEEEEcCCCCCCcHH---HHHHHHHHHHhCCCEEEEEeec
Q psy15582 30 ANVLIICPTPSYSHQV---PFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~---~~l~la~~L~~rGH~V~~~~~~ 67 (477)
.||.++++..+.=|-. -...+.++|.++||+|.++...
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 3777755555555655 6789999999999999988653
No 366
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=27.70 E-value=1.2e+02 Score=25.93 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=31.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecC
Q psy15582 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDP 68 (477)
Q Consensus 32 IL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~ 68 (477)
|.|..+-||-|-..-...||..|+++|++|.++-.+.
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~ 38 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADL 38 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4565667899999999999999999999999986644
No 367
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=27.62 E-value=5.4e+02 Score=24.58 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=51.2
Q ss_pred EEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCC--CCCC-CCe--EEeecCC------------------
Q psy15582 274 IYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDIL--PDLP-SNV--ICRKWLP------------------ 330 (477)
Q Consensus 274 V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~--~~~~-~nv--~i~~~vp------------------ 330 (477)
|+++.|+... .......+++++.+.+ +.+.+.+..... ...+ .++ ...++..
T Consensus 2 ~~~~~~~~gG----~~~~~~~la~~l~~~G-~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (350)
T cd03785 2 ILIAGGGTGG----HIFPALALAEELRERG-AEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLK 76 (350)
T ss_pred EEEEecCchh----hhhHHHHHHHHHHhCC-CEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHH
Confidence 6777777654 3556778999999888 887766543321 1111 222 2222210
Q ss_pred ----hhhhhcCCCceEEEEcCChhH---HHHHHHhCCcEEecc
Q psy15582 331 ----QHDILAHPKVKLFIMQGGLQS---SQEAIHFGVPMIGIP 366 (477)
Q Consensus 331 ----~~~lL~h~~~~~~I~hgG~~s---~~Eal~~GvP~i~~P 366 (477)
...++...+-|++++|++..+ ..-+...|+|.++..
T Consensus 77 ~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~ 119 (350)
T cd03785 77 GVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHE 119 (350)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEc
Confidence 012334456899999986543 334556799998643
No 368
>PRK05868 hypothetical protein; Validated
Probab=27.62 E-value=77 Score=31.32 Aligned_cols=32 Identities=31% Similarity=0.274 Sum_probs=24.3
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
|++|+| +.. | ..-+.+|..|+++||+|+++=.
T Consensus 1 ~~~V~I-vGg---G--~aGl~~A~~L~~~G~~v~viE~ 32 (372)
T PRK05868 1 MKTVVV-SGA---S--VAGTAAAYWLGRHGYSVTMVER 32 (372)
T ss_pred CCeEEE-ECC---C--HHHHHHHHHHHhCCCCEEEEcC
Confidence 678888 432 3 3467788889999999999866
No 369
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=27.55 E-value=62 Score=29.51 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 43 HQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 43 H~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
|...|..-|++|.++|++|+++..+
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5678999999999999999999884
No 370
>PRK07952 DNA replication protein DnaC; Validated
Probab=27.12 E-value=1.1e+02 Score=28.31 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEe
Q psy15582 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIG 65 (477)
Q Consensus 32 IL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~ 65 (477)
-+++.+.+|.|-..-+.++|++|.++|+.|.+++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555888899999999999999999999998874
No 371
>PRK14974 cell division protein FtsY; Provisional
Probab=27.11 E-value=1.2e+02 Score=29.63 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=34.7
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCC
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPL 69 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~ 69 (477)
.+++++++.+|.|-..-...+|..|.++|+.|.++..+..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 4676668999999999999999999999999999887644
No 372
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.05 E-value=99 Score=27.87 Aligned_cols=34 Identities=21% Similarity=0.060 Sum_probs=24.2
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
.+++||| + ++.|+ -...+++.|.++||+|++++.
T Consensus 5 ~~~~vlI-t--Gasg~--iG~~l~~~l~~~g~~v~~~~~ 38 (249)
T PRK12825 5 MGRVALV-T--GAARG--LGRAIALRLARAGADVVVHYR 38 (249)
T ss_pred CCCEEEE-e--CCCch--HHHHHHHHHHHCCCeEEEEeC
Confidence 4567877 3 34455 457889999999999866554
No 373
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.97 E-value=3.7e+02 Score=28.36 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=23.2
Q ss_pred CCceEEEEcCChh------HHHHHHHhCCcEEecc
Q psy15582 338 PKVKLFIMQGGLQ------SSQEAIHFGVPMIGIP 366 (477)
Q Consensus 338 ~~~~~~I~hgG~~------s~~Eal~~GvP~i~~P 366 (477)
.+..+++.|.|-| .+.+|...++|+|++.
T Consensus 65 g~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 65 GKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 4577788887764 5899999999999884
No 374
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=26.95 E-value=3.1e+02 Score=24.16 Aligned_cols=34 Identities=9% Similarity=0.114 Sum_probs=21.2
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCC--EEEEEeec
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGH--TVTMIGTD 67 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH--~V~~~~~~ 67 (477)
+||.|+++. .| ..+.++.+.+.+.++ +|.++.++
T Consensus 1 ~riail~sg--~g--s~~~~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLISG--NG--SNLQAIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred CeEEEEEcC--CC--hhHHHHHHHHHcCCCCceEEEEEEC
Confidence 377775442 23 346688888887766 66665554
No 375
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.85 E-value=1e+02 Score=32.29 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=29.6
Q ss_pred ccccEEEEcCCCC------CCcHHHHHH---HHHHHHhCCCEEEEEee
Q psy15582 28 ESANVLIICPTPS------YSHQVPFIA---IGKELVRRGHTVTMIGT 66 (477)
Q Consensus 28 ~~~kIL~~~~~~~------~GH~~~~l~---la~~L~~rGH~V~~~~~ 66 (477)
.|+|++|-++.+. .||+...++ +|+-++-+||+|.++|.
T Consensus 3 ~~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtG 50 (558)
T COG0143 3 MMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTG 50 (558)
T ss_pred CCCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4678888555442 789886554 57888889999999999
No 376
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=26.84 E-value=1.9e+02 Score=22.74 Aligned_cols=54 Identities=9% Similarity=-0.017 Sum_probs=32.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee--cCCCCCCCCeeEEEccc
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT--DPLKEPPVNYTDIDLSF 83 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~--~~~~~~~~~~~~~~~~~ 83 (477)
+.|||+ +|..|.|=-.-...+-++..+.|.++.+-.. .........++.+-+.+
T Consensus 3 ~kkIll-vC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~~~~~~~~DviLl~P 58 (106)
T PRK10499 3 KKHIYL-FCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGP 58 (106)
T ss_pred CCEEEE-ECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchhhccccCCCEEEECH
Confidence 578999 5655655555555666666889998887442 22222344566666654
No 377
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=26.67 E-value=66 Score=28.22 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=25.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
||++-++ |..=..-...+.+.|.++|++|.++.+.
T Consensus 1 ~illgvt--Gsiaa~ka~~lir~L~~~g~~V~vv~T~ 35 (181)
T TIGR00421 1 RIVVAMT--GASGVIYGIRLLEVLKEAGVEVHLVISD 35 (181)
T ss_pred CEEEEEE--CHHHHHHHHHHHHHHHHCCCEEEEEECc
Confidence 4555222 3344556688999999999999988883
No 378
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=26.62 E-value=1.5e+02 Score=25.36 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=32.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCC
Q psy15582 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPL 69 (477)
Q Consensus 32 IL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~ 69 (477)
|.++...+|.|-......+|..++++|..|.++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 34447889999999999999999999999999887653
No 379
>PRK06179 short chain dehydrogenase; Provisional
Probab=26.55 E-value=1.4e+02 Score=27.52 Aligned_cols=27 Identities=22% Similarity=0.070 Sum_probs=20.9
Q ss_pred CCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 39 PSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 39 ~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
|+.|.+ ..+++++|+++|++|+..+..
T Consensus 11 Gasg~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 11 GASSGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred cCCCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 344554 578999999999999887764
No 380
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=26.36 E-value=68 Score=32.01 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=29.0
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
.+||++.++ |.+...-...+++.|.+.|++|.++.+
T Consensus 3 ~k~IllgiT--GSiaa~~~~~ll~~L~~~g~~V~vv~T 38 (390)
T TIGR00521 3 NKKILLGVT--GGIAAYKTVELVRELVRQGAEVKVIMT 38 (390)
T ss_pred CCEEEEEEe--CHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 567877333 557778899999999999999998887
No 381
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=26.30 E-value=2.2e+02 Score=28.22 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=43.2
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCCh-hhhhcCCCceEEEEcCCh
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQ-HDILAHPKVKLFIMQGGL 349 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~-~~lL~h~~~~~~I~hgG~ 349 (477)
+++++|+ |.... .....+.+.+.|++.+ ..+.+..+-... |. .+-+.+ ...+...++|++|.=||.
T Consensus 24 ~r~livt-~~~~~----~~g~~~~v~~~L~~~g-i~~~~~~~v~~~---p~----~~~v~~~~~~~~~~~~D~IIaiGGG 90 (375)
T cd08194 24 KRPLIVT-DKVMV----KLGLVDKLTDSLKKEG-IESAIFDDVVSE---PT----DESVEEGVKLAKEGGCDVIIALGGG 90 (375)
T ss_pred CeEEEEc-Ccchh----hcchHHHHHHHHHHCC-CeEEEECCCCCC---cC----HHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4444454 54433 1235566778887766 554432211110 11 111111 223333568899988884
Q ss_pred hHHHHH---HH--------------------hCCcEEeccCC
Q psy15582 350 QSSQEA---IH--------------------FGVPMIGIPFF 368 (477)
Q Consensus 350 ~s~~Ea---l~--------------------~GvP~i~~P~~ 368 (477)
|+..+ ++ .++|++.+|..
T Consensus 91 -S~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 91 -SPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred -hHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 44442 22 36899999975
No 382
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=26.29 E-value=1.7e+02 Score=27.31 Aligned_cols=41 Identities=7% Similarity=0.121 Sum_probs=32.6
Q ss_pred cccc-EEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecC
Q psy15582 28 ESAN-VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDP 68 (477)
Q Consensus 28 ~~~k-IL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~ 68 (477)
+..| |.|..+.+|-|-..-...+|.+|++.|++|.++-.+.
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~ 142 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANL 142 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 3344 5665556889999999999999999999999887743
No 383
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=26.17 E-value=4.8e+02 Score=24.34 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=47.5
Q ss_pred HHHHHhhCCCceEEEEecCCCCCCC-----------CCCeEEeecCChhhhhcCCCceEEEEcCC----hhHHHHHHHhC
Q psy15582 295 IVDSFKQFPRHRIIWKWEEDILPDL-----------PSNVICRKWLPQHDILAHPKVKLFIMQGG----LQSSQEAIHFG 359 (477)
Q Consensus 295 i~~al~~~~~~~~l~~~~~~~~~~~-----------~~nv~i~~~vp~~~lL~h~~~~~~I~hgG----~~s~~Eal~~G 359 (477)
+++.+.+.++.+++..++....+.. +..+.+.. +...+ . ..+|++|--.. ...+.+|+.+|
T Consensus 17 i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~--d~~~l-~-~~~DvVIdfT~p~~~~~~~~~al~~g 92 (266)
T TIGR00036 17 LIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTD--DLEAV-E-TDPDVLIDFTTPEGVLNHLKFALEHG 92 (266)
T ss_pred HHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeC--CHHHh-c-CCCCEEEECCChHHHHHHHHHHHHCC
Confidence 4555555566888887763211110 11233322 22223 2 34677764332 24577889999
Q ss_pred CcEEe-ccCC-cchHHHHHHH-HHcCceEEccC
Q psy15582 360 VPMIG-IPFF-ADQDTNVRKL-ESMDVARFLEY 389 (477)
Q Consensus 360 vP~i~-~P~~-~dQ~~na~~~-~~~G~g~~l~~ 389 (477)
+|+++ .|-+ .+|...-... ++.|+.+.+..
T Consensus 93 ~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~ 125 (266)
T TIGR00036 93 VRLVVGTTGFSEEDKQELADLAEKAGIAAVIAP 125 (266)
T ss_pred CCEEEECCCCCHHHHHHHHHHHhcCCccEEEEC
Confidence 99995 4533 2344333333 45567777753
No 384
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.15 E-value=89 Score=28.26 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=28.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 36 CPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 36 ~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
-.--+.|--.-++.++-.+...||.|++++++
T Consensus 34 EGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe 65 (235)
T COG2874 34 EGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTE 65 (235)
T ss_pred ECCCCccHHHHHHHHHHHHHhCCceEEEEEec
Confidence 44557899999999999999999999999993
No 385
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=26.09 E-value=1e+02 Score=28.29 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=28.9
Q ss_pred cccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 27 VESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 27 ~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
...++||++.+.|- --..-+-.....|.++||+|++++-.
T Consensus 8 ~~~~~vL~v~aHPD-De~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 8 LDPLRVLVVFAHPD-DEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred ccCCcEEEEecCCc-chhhccHHHHHHHHHCCCeEEEEEcc
Confidence 46779999888774 22334455566678999999999984
No 386
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=26.04 E-value=8.3e+02 Score=26.09 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=63.2
Q ss_pred CceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCC-hhhhhcCCCceEEEE---c
Q psy15582 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLP-QHDILAHPKVKLFIM---Q 346 (477)
Q Consensus 271 ~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp-~~~lL~h~~~~~~I~---h 346 (477)
.|+.+|-.|+..+.+....+..+.+.+.. +.+ ..+++|.+..-.+ ..+=+..+.+|++.. .
T Consensus 423 ~pvq~V~~Gka~p~d~~gk~~i~~i~~la-~~~--------------~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr 487 (601)
T TIGR02094 423 RPVQIVFAGKAHPADGEGKEIIQRIVEFS-KRP--------------EFRGRIVFLENYDINLARYLVSGVDVWLNNPRR 487 (601)
T ss_pred CCeEEEEEEecCcccchHHHHHHHHHHHH-hcc--------------cCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCC
Confidence 67778888888775433344444433332 211 2344665554332 222111278888876 2
Q ss_pred ----CChhHHHHHHHhCCcEEeccC-CcchHHHHHHHHHcCceEEccC----------CCCCHHHHHHHHHHHh
Q psy15582 347 ----GGLQSSQEAIHFGVPMIGIPF-FADQDTNVRKLESMDVARFLEY----------ENITAETLVTLMKSIL 405 (477)
Q Consensus 347 ----gG~~s~~Eal~~GvP~i~~P~-~~dQ~~na~~~~~~G~g~~l~~----------~~~~~~~l~~al~~ll 405 (477)
||. |=+-|+.+|.+.+.+-- +.++..+ .|-|..+.. ++.++++|.++|++.+
T Consensus 488 ~~EacGt-sqMka~~nGgL~~sv~DG~~~E~~~------~~nGf~f~~~~~~~~~~~~d~~da~~l~~~L~~ai 554 (601)
T TIGR02094 488 PLEASGT-SGMKAAMNGVLNLSILDGWWGEGYD------GDNGWAIGDGEEYDDEEEQDRLDAEALYDLLENEV 554 (601)
T ss_pred CcCCchH-HHHHHHHcCCceeecccCcccccCC------CCcEEEECCCccccccccccCCCHHHHHHHHHHHH
Confidence 565 45566668999996643 2222222 256666652 2468888998887644
No 387
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=26.01 E-value=1.1e+02 Score=27.95 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=25.3
Q ss_pred cccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 27 VESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 27 ~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
..++|||+ +. +.| .-...+++.|.++||+|+.++.
T Consensus 15 ~~~~~ilI-tG--asG--~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 15 VKTKTVFV-AG--ATG--RTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred ccCCeEEE-EC--CCc--HHHHHHHHHHHhCCCEEEEEec
Confidence 35778888 33 334 3456788999999999987765
No 388
>PRK12377 putative replication protein; Provisional
Probab=25.98 E-value=1.1e+02 Score=28.41 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=29.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
.+++ ++.+|.|=..-+.++|++|.+.|+.|.+++.
T Consensus 103 ~l~l-~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 103 NFVF-SGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred eEEE-ECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 4544 8888999999999999999999999877655
No 389
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=25.96 E-value=93 Score=29.29 Aligned_cols=37 Identities=19% Similarity=0.357 Sum_probs=26.7
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
|+=|++ ++.|+.|-...+..|++.|.+.|.+|.++..
T Consensus 1 MpLiil-~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~ 37 (270)
T PF08433_consen 1 MPLIIL-CGLPCSGKTTRAKELKKYLEEKGKEVVIISD 37 (270)
T ss_dssp E-EEEE-E--TTSSHHHHHHHHHHHHHHTT--EEEE-T
T ss_pred CEEEEE-EcCCCCcHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 333555 8999999999999999999998899888875
No 390
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=25.70 E-value=1e+02 Score=28.52 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=26.0
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEe
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIG 65 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~ 65 (477)
.||+|++..+- .=--.+.+|+.|.++|++|+++.
T Consensus 61 ~~V~VlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGN--NGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCC--CchhHHHHHHHHHHCCCeEEEEE
Confidence 68988555442 22357889999999999999887
No 391
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=25.66 E-value=1.2e+02 Score=23.27 Aligned_cols=35 Identities=9% Similarity=0.038 Sum_probs=24.1
Q ss_pred cEEEEcCCCCCCcHHH-HHHHHHHHHhCCCEEEEEee
Q psy15582 31 NVLIICPTPSYSHQVP-FIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~-~l~la~~L~~rGH~V~~~~~ 66 (477)
|||+ +|..|.|=-.- ...+=+.|.++|-++.+...
T Consensus 4 kILv-vCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~ 39 (94)
T PRK10310 4 KIIV-ACGGAVATSTMAAEEIKELCQSHNIPVELIQC 39 (94)
T ss_pred eEEE-ECCCchhHHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 7988 55445443333 46677888899999887765
No 392
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=25.63 E-value=4.1e+02 Score=24.68 Aligned_cols=92 Identities=13% Similarity=0.205 Sum_probs=0.0
Q ss_pred hhhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCc-eEEEEecCCCCC-------CCCCCeEEeecCC-
Q psy15582 260 QNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRH-RIIWKWEEDILP-------DLPSNVICRKWLP- 330 (477)
Q Consensus 260 ~~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~-~~l~~~~~~~~~-------~~~~nv~i~~~vp- 330 (477)
++..+.+.+ ..+.||+++|+..- ..+.+.++. +++..+=+.... ..|..-++.-.=|
T Consensus 118 ~ea~~~~~~-~~~rVflt~G~~~l-------------~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPf 183 (257)
T COG2099 118 EEAAEAAKQ-LGRRVFLTTGRQNL-------------AHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPF 183 (257)
T ss_pred HHHHHHHhc-cCCcEEEecCccch-------------HHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCc
Q ss_pred ----hhhhhcCCCceEEEEcCChhH------HHHHHHhCCcEEec
Q psy15582 331 ----QHDILAHPKVKLFIMQGGLQS------SQEAIHFGVPMIGI 365 (477)
Q Consensus 331 ----~~~lL~h~~~~~~I~hgG~~s------~~Eal~~GvP~i~~ 365 (477)
...+|..-+++++||.-..++ +.-|...|+|+|++
T Consensus 184 s~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 184 SEEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred ChHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
No 393
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional
Probab=25.60 E-value=1e+02 Score=29.81 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=30.7
Q ss_pred hhccchhHHHHHHHHhhc-cccccEEEEcCCCCCCcH-HHHHHHHHHHHhC-CCEEEEEe
Q psy15582 9 MLASHSQLALILMAFLLT-VESANVLIICPTPSYSHQ-VPFIAIGKELVRR-GHTVTMIG 65 (477)
Q Consensus 9 ~~~~~~~~~l~~~~~~~~-~~~~kIL~~~~~~~~GH~-~~~l~la~~L~~r-GH~V~~~~ 65 (477)
||-++..||+|++.+..+ ....++.+ ++..++..- .+...+++.+.++ |.+|.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~L~v-y~~~~~~~~~~~~~~i~~~Fe~~tgikV~~~~ 59 (330)
T PRK11205 1 MLKKLLPLLLLAAAPVFAAAAKPVLTV-YTYDSFAAEWGPGPAVKKAFEAECGCELKFVA 59 (330)
T ss_pred ChhhHHHHHHHHHHHHhhccCCCeEEE-EEcccccccCCCchHHHHHHHHHHCCEEEEEe
Confidence 566666666655544433 34445555 454333221 1235677777654 88877653
No 394
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=25.57 E-value=1.1e+02 Score=29.65 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=31.0
Q ss_pred EEEE--cCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 32 VLII--CPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 32 IL~~--~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
|+.+ ++.+|.|-.--...|++.|.++|+.|.+++.
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsR 87 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSR 87 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECC
Confidence 6665 5678999999999999999999999999987
No 395
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=25.56 E-value=1.2e+02 Score=26.47 Aligned_cols=36 Identities=8% Similarity=0.065 Sum_probs=28.7
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
++||.+ ...|.+-+.-.+.+.+.|.+.|+||.++.+
T Consensus 2 ~~riiv--gisGASG~iygvrlLe~L~~~~~e~hlviS 37 (191)
T COG0163 2 MKRIIV--GISGASGAIYGVRLLEVLRELGVETHLVIS 37 (191)
T ss_pred CcEEEE--EEeccccHHHHHHHHHHHHhcCceEEEEEc
Confidence 445544 555667788889999999999999999888
No 396
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=25.56 E-value=74 Score=31.88 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=29.5
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+++||++.++ |.+...-...+.+.|.++|++|.++.+
T Consensus 5 ~~k~IllgvT--Gsiaa~k~~~lv~~L~~~g~~V~vv~T 41 (399)
T PRK05579 5 AGKRIVLGVS--GGIAAYKALELVRRLRKAGADVRVVMT 41 (399)
T ss_pred CCCeEEEEEe--CHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 3567877443 446777889999999999999998887
No 397
>PRK08322 acetolactate synthase; Reviewed
Probab=25.55 E-value=2.9e+02 Score=28.88 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=22.7
Q ss_pred CCceEEEEcCCh------hHHHHHHHhCCcEEecc
Q psy15582 338 PKVKLFIMQGGL------QSSQEAIHFGVPMIGIP 366 (477)
Q Consensus 338 ~~~~~~I~hgG~------~s~~Eal~~GvP~i~~P 366 (477)
.+..++++|.|- +.+.||...++|+|++.
T Consensus 62 g~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 62 GKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 456677877665 45899999999999874
No 398
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=25.52 E-value=4.5e+02 Score=26.52 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=21.5
Q ss_pred CceEEEEcCChh------HHHHHHHhCCcEEec
Q psy15582 339 KVKLFIMQGGLQ------SSQEAIHFGVPMIGI 365 (477)
Q Consensus 339 ~~~~~I~hgG~~------s~~Eal~~GvP~i~~ 365 (477)
+..+++++.|-| .+.||...++|+|++
T Consensus 63 ~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 63 RPVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CCEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 466777777664 478999999999988
No 399
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=25.49 E-value=1.4e+02 Score=23.33 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=25.1
Q ss_pred cEEEEcCCCC-CCc-HHHHHHHHHHHHhCC---CEEEEEee
Q psy15582 31 NVLIICPTPS-YSH-QVPFIAIGKELVRRG---HTVTMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~-~GH-~~~~l~la~~L~~rG---H~V~~~~~ 66 (477)
|+++++..+. ... ....+.++......| |+|.++..
T Consensus 2 ~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~ 42 (122)
T PF02635_consen 2 KVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFH 42 (122)
T ss_dssp EEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEE
Confidence 5666555443 333 688888899999999 99998877
No 400
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=25.46 E-value=1e+02 Score=27.60 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+.+|||| .|.|.+- ...++.|.+.|++|+++.+
T Consensus 9 ~~k~vLV----IGgG~va--~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVI----VGGGKVA--GRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCCEEEE----ECCCHHH--HHHHHHHHHCCCeEEEEcC
No 401
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=25.44 E-value=2.6e+02 Score=26.39 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHHh-----CCcEE
Q psy15582 289 EDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHF-----GVPMI 363 (477)
Q Consensus 289 ~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~-----GvP~i 363 (477)
.+..+.+.+.+.+.+ ..+.+...... ... ...+. .... ...+++|.-||-||+.|++.. ..|.+
T Consensus 18 ~~~~~~i~~~l~~~~-~~~~~~~t~~~-~~~------~~~~~--~~~~-~~~d~ivv~GGDGTl~~v~~~l~~~~~~~~l 86 (293)
T TIGR00147 18 NKPLREVIMLLREEG-MEIHVRVTWEK-GDA------ARYVE--EARK-FGVDTVIAGGGDGTINEVVNALIQLDDIPAL 86 (293)
T ss_pred HHHHHHHHHHHHHCC-CEEEEEEecCc-ccH------HHHHH--HHHh-cCCCEEEEECCCChHHHHHHHHhcCCCCCcE
Confidence 566777888888777 65544322111 000 01111 1122 347899999999999997653 34555
Q ss_pred -eccC
Q psy15582 364 -GIPF 367 (477)
Q Consensus 364 -~~P~ 367 (477)
++|.
T Consensus 87 giiP~ 91 (293)
T TIGR00147 87 GILPL 91 (293)
T ss_pred EEEcC
Confidence 5895
No 402
>PRK06180 short chain dehydrogenase; Provisional
Probab=25.35 E-value=1.1e+02 Score=28.55 Aligned_cols=32 Identities=22% Similarity=0.064 Sum_probs=23.1
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
++||| + |+.|.+ ..++++.|+++||+|..+..
T Consensus 5 ~~vlV-t--Gasggi--G~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 5 KTWLI-T--GVSSGF--GRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CEEEE-e--cCCChH--HHHHHHHHHhCcCEEEEEeC
Confidence 45655 2 445544 67889999999999988765
No 403
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=25.34 E-value=4.8e+02 Score=23.13 Aligned_cols=34 Identities=6% Similarity=0.169 Sum_probs=23.1
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 32 IL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
|.| .+..|.|-....+.+|-.-.-+|..|.++..
T Consensus 31 i~V-~TG~GKGKTTAAlG~alRa~GhG~rv~vvQF 64 (198)
T COG2109 31 IIV-FTGNGKGKTTAALGLALRALGHGLRVGVVQF 64 (198)
T ss_pred EEE-EecCCCChhHHHHHHHHHHhcCCCEEEEEEE
Confidence 444 5666778877777776666666667776665
No 404
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=25.30 E-value=84 Score=27.38 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=24.0
Q ss_pred CCCCCCcHHH-HHHHHHHHHh-CCCEEEEEeec
Q psy15582 37 PTPSYSHQVP-FIAIGKELVR-RGHTVTMIGTD 67 (477)
Q Consensus 37 ~~~~~GH~~~-~l~la~~L~~-rGH~V~~~~~~ 67 (477)
+..|.||... ...+.++|.+ +||+|.++.+.
T Consensus 5 gitGsg~~l~e~v~~l~~L~~~~g~eV~vv~S~ 37 (174)
T TIGR02699 5 GITGSGDKLPETYSIMKDVKNRYGDEIDVFLSK 37 (174)
T ss_pred EEEccHHHHHHHHHHHHHHHHhcCCEEEEEECH
Confidence 3345588866 8899999985 59999988883
No 405
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=25.17 E-value=3.7e+02 Score=28.26 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCceEEEEcCChh------HHHHHHHhCCcEEecc
Q psy15582 338 PKVKLFIMQGGLQ------SSQEAIHFGVPMIGIP 366 (477)
Q Consensus 338 ~~~~~~I~hgG~~------s~~Eal~~GvP~i~~P 366 (477)
.+..++++|.|-| .+.||...++|+|++.
T Consensus 63 g~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 63 GKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3466788887764 5899999999999884
No 406
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=25.14 E-value=3.2e+02 Score=29.00 Aligned_cols=76 Identities=11% Similarity=0.088 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhCCCceEEEEecCCCCC----CCC-CCeEEeecCCh-hhh-------hcCCCceEEEEcCChh------
Q psy15582 290 DKRKAIVDSFKQFPRHRIIWKWEEDILP----DLP-SNVICRKWLPQ-HDI-------LAHPKVKLFIMQGGLQ------ 350 (477)
Q Consensus 290 ~~~~~i~~al~~~~~~~~l~~~~~~~~~----~~~-~nv~i~~~vp~-~~l-------L~h~~~~~~I~hgG~~------ 350 (477)
...+.+++.|++.+ .+.|+...|.... .+. .++.+..-... ... ....+..++++|.|-|
T Consensus 7 ~~~~~l~~~L~~~G-V~~vFGvpG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~ 85 (588)
T PRK07525 7 TPSEAFVETLQAHG-ITHAFGIIGSAFMDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVT 85 (588)
T ss_pred cHHHHHHHHHHHcC-CCEEEEeCCCchHHHHHHHhccCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHH
Confidence 34456677777777 7777777664321 111 12332221111 111 1124567788887764
Q ss_pred HHHHHHHhCCcEEecc
Q psy15582 351 SSQEAIHFGVPMIGIP 366 (477)
Q Consensus 351 s~~Eal~~GvP~i~~P 366 (477)
.+.+|...++|+|++.
T Consensus 86 gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 86 AVATAYWAHTPVVLVT 101 (588)
T ss_pred HHHHHhhcCCCEEEEe
Confidence 4788999999999874
No 407
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=25.09 E-value=35 Score=29.66 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=25.0
Q ss_pred cCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcchHHHHH
Q psy15582 336 AHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVR 376 (477)
Q Consensus 336 ~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~ 376 (477)
.+..++++|++||...+..... ++|++-+|..+--...|-
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al 70 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRAL 70 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHH
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHH
Confidence 4578999999998877777766 899998887663333333
No 408
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=25.04 E-value=1.2e+02 Score=19.69 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHhcC-HHHHHHHHH
Q psy15582 393 TAETLVTLMKSILYN-ETVYRKSQV 416 (477)
Q Consensus 393 ~~~~l~~al~~ll~~-~~~~~~a~~ 416 (477)
++++|.+||..+.++ -++++.|+.
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~ 25 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKK 25 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 468899999999876 455555544
No 409
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=24.98 E-value=1.1e+02 Score=27.01 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=25.0
Q ss_pred ccEEEEcCCCCC-CcHHH--HHHHHHHHHhCC-CEEEEEeec
Q psy15582 30 ANVLIICPTPSY-SHQVP--FIAIGKELVRRG-HTVTMIGTD 67 (477)
Q Consensus 30 ~kIL~~~~~~~~-GH~~~--~l~la~~L~~rG-H~V~~~~~~ 67 (477)
+|||++.+.|-. ++.+. ...++++|.++| |+|++.-..
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~ 42 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGPHEVEIRDLY 42 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCCCEEEEEECc
Confidence 489998887754 33322 356678888899 998887663
No 410
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=24.95 E-value=93 Score=29.71 Aligned_cols=34 Identities=26% Similarity=0.160 Sum_probs=24.6
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
.++||| +|+.|++- ..+++.|.++||+|+.++..
T Consensus 4 ~~~ilV---tGatGfIG--~~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 4 GKVVCV---TGASGYIA--SWLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred CCEEEE---ECChHHHH--HHHHHHHHHCCCEEEEEEcC
Confidence 357776 24567665 45789999999999877653
No 411
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=24.79 E-value=1.5e+02 Score=27.61 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=33.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCC
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPL 69 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~ 69 (477)
+|.| ..=||-|-..-+..||..|+++|++|.++-.++.
T Consensus 2 ~i~v-~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq 39 (267)
T cd02032 2 VLAV-YGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPK 39 (267)
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4666 5778999999999999999999999999988754
No 412
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=24.78 E-value=2.1e+02 Score=27.05 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCEEEEEeecCCC
Q psy15582 48 IAIGKELVRRGHTVTMIGTDPLK 70 (477)
Q Consensus 48 l~la~~L~~rGH~V~~~~~~~~~ 70 (477)
.++|..++++|++|.+++.++..
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 46788889999999888886544
No 413
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=24.76 E-value=4.7e+02 Score=22.76 Aligned_cols=36 Identities=8% Similarity=0.148 Sum_probs=30.1
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+-|.+ ++..|.|-...++.+|-..+.+|+.|.++..
T Consensus 6 Gli~v-~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQF 41 (173)
T TIGR00708 6 GIIIV-HTGNGKGKTTAAFGMALRALGHGKKVGVIQF 41 (173)
T ss_pred cEEEE-ECCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 45666 5668899999999999999999999987766
No 414
>PRK03094 hypothetical protein; Provisional
Probab=24.75 E-value=67 Score=23.86 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCEEEEEee
Q psy15582 48 IAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 48 l~la~~L~~rGH~V~~~~~ 66 (477)
-.+.++|+++|++|.=+..
T Consensus 11 s~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 11 TDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred HHHHHHHHHCCCEEEecCc
Confidence 4689999999999976544
No 415
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=24.72 E-value=1e+02 Score=29.13 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=24.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecC
Q psy15582 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDP 68 (477)
Q Consensus 32 IL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~ 68 (477)
||| + |+.|-+- ..|++.|.++||+|..+....
T Consensus 3 ILV-t--G~tGfiG--~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 3 ILV-T--GGAGFIG--SHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred EEE-E--cCcccHH--HHHHHHHHhCCCeEEEEeCCC
Confidence 666 3 3355555 789999999999999998743
No 416
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=24.66 E-value=5.7e+02 Score=24.37 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=48.2
Q ss_pred EEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCC-CC----CCCeEEeecCC------------------
Q psy15582 274 IYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILP-DL----PSNVICRKWLP------------------ 330 (477)
Q Consensus 274 V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~-~~----~~nv~i~~~vp------------------ 330 (477)
|+++.|+... .......+++.+.+.+ +.+.+.++..... .. .-+++..+..+
T Consensus 3 i~~~~g~~~g----~~~~~~~La~~L~~~g-~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 77 (348)
T TIGR01133 3 VVLAAGGTGG----HIFPALAVAEELIKRG-VEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLK 77 (348)
T ss_pred EEEEeCccHH----HHhHHHHHHHHHHhCC-CEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHH
Confidence 6777777654 2334457899998887 7766555422111 11 11222222111
Q ss_pred ----hhhhhcCCCceEEEEcCChhHHH---HHHHhCCcEEe
Q psy15582 331 ----QHDILAHPKVKLFIMQGGLQSSQ---EAIHFGVPMIG 364 (477)
Q Consensus 331 ----~~~lL~h~~~~~~I~hgG~~s~~---Eal~~GvP~i~ 364 (477)
-..++...+.|++++|++..... -+...|+|.+.
T Consensus 78 ~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 78 AVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFH 118 (348)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEE
Confidence 11234445689999998875544 34457889875
No 417
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=24.66 E-value=1.1e+02 Score=27.65 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=24.7
Q ss_pred CChhHHHHHHHhCCcEEeccCC--cchHHHHHHHHHcCceEEc
Q psy15582 347 GGLQSSQEAIHFGVPMIGIPFF--ADQDTNVRKLESMDVARFL 387 (477)
Q Consensus 347 gG~~s~~Eal~~GvP~i~~P~~--~dQ~~na~~~~~~G~g~~l 387 (477)
|.+.|+.+|+..|+|+.++|-. .++..-...+.+.| +..+
T Consensus 169 Gt~~ta~~A~~~gr~v~~vp~~~~~~~~~G~~~Li~~G-A~~v 210 (212)
T PF02481_consen 169 GTLHTARFALEQGRPVFAVPGPIDDPNSEGNNELIKEG-AKLV 210 (212)
T ss_dssp THHHHHHHHHHHT--EEE----TT-GGGHHHHHHHHTT--EE-
T ss_pred hHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHcC-CEee
Confidence 4557889999999999999743 45677777888888 4443
No 418
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=24.62 E-value=93 Score=23.21 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=32.6
Q ss_pred cEEEEcCCCCCCcHHHH-HHHHHHHHhCCCEEEEEeecCCCC--CCCCeeEEEcc
Q psy15582 31 NVLIICPTPSYSHQVPF-IAIGKELVRRGHTVTMIGTDPLKE--PPVNYTDIDLS 82 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~-l~la~~L~~rGH~V~~~~~~~~~~--~~~~~~~~~~~ 82 (477)
|||+ +|..|.|.-.-. ..+=+.+.++|.++.......... ...+++.+-..
T Consensus 1 kIlv-vC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~~~~~~~~~~D~il~~ 54 (90)
T PF02302_consen 1 KILV-VCGSGIGTSLMVANKIKKALKELGIEVEVSAGSILEVEEIADDADLILLT 54 (90)
T ss_dssp EEEE-EESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETTTHHHHHTT-SEEEEE
T ss_pred CEEE-ECCChHHHHHHHHHHHHHHHHhccCceEEEEecccccccccCCCcEEEEc
Confidence 6888 555666666666 889999999998777766651111 13446655443
No 419
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=24.52 E-value=91 Score=31.71 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=28.4
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
++||++ +..+..| +++|+.|.++|++|++.-.
T Consensus 7 ~~kv~V-~GLG~sG-----~a~a~~L~~~G~~v~v~D~ 38 (448)
T COG0771 7 GKKVLV-LGLGKSG-----LAAARFLLKLGAEVTVSDD 38 (448)
T ss_pred CCEEEE-Eeccccc-----HHHHHHHHHCCCeEEEEcC
Confidence 778999 7888777 8999999999999999886
No 420
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=24.46 E-value=4.2e+02 Score=22.46 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=19.8
Q ss_pred CceEEEEcCCh----hHHHHHH-HhCCcEEecc
Q psy15582 339 KVKLFIMQGGL----QSSQEAI-HFGVPMIGIP 366 (477)
Q Consensus 339 ~~~~~I~hgG~----~s~~Eal-~~GvP~i~~P 366 (477)
...++..+.|. |.+.+|. .+++|++++-
T Consensus 59 ~~~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~ 91 (157)
T TIGR03845 59 KPAILMQSSGLGNSINALASLNKTYGIPLPILA 91 (157)
T ss_pred CcEEEEeCCcHHHHHHHHHHHHHcCCCCEEEEE
Confidence 34466677776 4467777 9999999664
No 421
>KOG3332|consensus
Probab=24.29 E-value=2.2e+02 Score=25.83 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=29.0
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDP 68 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~ 68 (477)
+.|||+++..|- -...-+-+....|..+||+|.++|...
T Consensus 37 ~sriLLviAhpd-DE~mFFsPtI~~L~~~~~~v~iLClSn 75 (247)
T KOG3332|consen 37 ESRILLVIAHPD-DESMFFSPTILYLTSGACNVHILCLSN 75 (247)
T ss_pred cceEEEEEeccC-ccccchhhHHHHHhcCCccEEEEEecC
Confidence 457877666664 445566777888889999999999843
No 422
>PRK01355 azoreductase; Reviewed
Probab=24.23 E-value=1.3e+02 Score=26.60 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=24.4
Q ss_pred cccEEEEcCCCC---CCcHH-HHHHHHHHHHhC--CCEEEEEeec
Q psy15582 29 SANVLIICPTPS---YSHQV-PFIAIGKELVRR--GHTVTMIGTD 67 (477)
Q Consensus 29 ~~kIL~~~~~~~---~GH~~-~~l~la~~L~~r--GH~V~~~~~~ 67 (477)
|+|||++.+.+- .|... -+..+++++.+. ||+|+++...
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~ 45 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLN 45 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 689999777774 23222 234456666663 5888887653
No 423
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=24.10 E-value=1.6e+02 Score=29.93 Aligned_cols=42 Identities=12% Similarity=0.224 Sum_probs=35.9
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHH-hCCCEEEEEeecCCCC
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELV-RRGHTVTMIGTDPLKE 71 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~-~rGH~V~~~~~~~~~~ 71 (477)
.+|+++++.+|.|-..-+..+|..|. ++|..|.+++.+..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 56777789999999999999999997 5899999999976443
No 424
>PRK08939 primosomal protein DnaI; Reviewed
Probab=24.06 E-value=1.2e+02 Score=29.20 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=30.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+=|++.+.+|.|=..-+.++|++|.++|..|+++..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~ 192 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF 192 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH
Confidence 344558888999999999999999999999887765
No 425
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=24.04 E-value=1.7e+02 Score=27.30 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=35.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEP 72 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~ 72 (477)
|..|-| ..-||-|-..-+..||-+|+++|.+|.++-.++....
T Consensus 1 m~~iav-~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~ 43 (274)
T PRK13235 1 MRKVAI-YGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADS 43 (274)
T ss_pred CCEEEE-eCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence 444555 4778999999999999999999999999988665543
No 426
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=23.99 E-value=1.9e+02 Score=29.33 Aligned_cols=38 Identities=32% Similarity=0.401 Sum_probs=28.7
Q ss_pred ccccEEEEcCCCCCCc-----HHHHHHHHHHHHhCCCEEEEEeecC
Q psy15582 28 ESANVLIICPTPSYSH-----QVPFIAIGKELVRRGHTVTMIGTDP 68 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH-----~~~~l~la~~L~~rGH~V~~~~~~~ 68 (477)
.+.||++ +| |||- ......+++.|.+||.+|.|+....
T Consensus 305 ~A~~ViI-VP--GYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPV 347 (462)
T PRK09444 305 NSHSVII-TP--GYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 347 (462)
T ss_pred hCCcEEE-EC--ChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4567877 44 5553 3567789999999999999999843
No 427
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=23.96 E-value=1.9e+02 Score=20.66 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCCEEEEEeecCCC--CCCCCeeEEEcccc
Q psy15582 48 IAIGKELVRRGHTVTMIGTDPLK--EPPVNYTDIDLSFS 84 (477)
Q Consensus 48 l~la~~L~~rGH~V~~~~~~~~~--~~~~~~~~~~~~~~ 84 (477)
-.|.++|.+.||+|..+...... ..+.++-++.+.+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~ 40 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPK 40 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccC
Confidence 35789999999999988874333 44556666666543
No 428
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=23.78 E-value=2.9e+02 Score=22.61 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=31.3
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC
Q psy15582 33 LIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK 70 (477)
Q Consensus 33 L~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~ 70 (477)
.+...-+|.|-......+|..++++|..|.++..+...
T Consensus 3 ~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~ 40 (139)
T cd02038 3 AVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGL 40 (139)
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 44455678899999999999999999999998886543
No 429
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=23.69 E-value=1.5e+02 Score=29.72 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=34.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK 70 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~ 70 (477)
+++.+++.+|.|-..-...||..|..+|..|.+++.+..+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4545588899999999999999999999999999987554
No 430
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=23.69 E-value=1.4e+02 Score=25.40 Aligned_cols=35 Identities=26% Similarity=0.225 Sum_probs=29.8
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 33 LIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 33 L~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
+.++...+.|-..-...|++.|.++|++|.++-.+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 34467778999999999999999999999988764
No 431
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=23.69 E-value=1.7e+02 Score=28.27 Aligned_cols=42 Identities=10% Similarity=0.224 Sum_probs=36.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK 70 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~ 70 (477)
..+++.+++.+|.|-..-+..||..+..+|++|.++..+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 456766688889999999999999999999999999886543
No 432
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=23.66 E-value=1e+02 Score=26.46 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=23.4
Q ss_pred CCceEEEEcCChhH------HHHHHHhCCcEEeccC
Q psy15582 338 PKVKLFIMQGGLQS------SQEAIHFGVPMIGIPF 367 (477)
Q Consensus 338 ~~~~~~I~hgG~~s------~~Eal~~GvP~i~~P~ 367 (477)
.+..++++|+|-|+ +.||...++|+|++.-
T Consensus 59 g~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 59 GRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred CCCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 34667788877754 7899999999998853
No 433
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=23.64 E-value=89 Score=24.47 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=19.7
Q ss_pred CCCcH--HHHHHHHHHHHhCCCEEEEEeec
Q psy15582 40 SYSHQ--VPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 40 ~~GH~--~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
+.+++ +|.+.|+++|.++|.+|.+.-|.
T Consensus 10 n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~ 39 (106)
T PF03720_consen 10 NTDDIRESPALELIEELKERGAEVSVYDPY 39 (106)
T ss_dssp TSS--TT-HHHHHHHHHHHTT-EEEEE-TT
T ss_pred CCcccccCHHHHHHHHHHHCCCEEEEECCc
Confidence 44454 89999999999999999888773
No 434
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=23.61 E-value=1.5e+02 Score=29.77 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=32.9
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK 70 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~ 70 (477)
..|.|...-||-|-..-+..||..|+.+|+.|.++-.++..
T Consensus 122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~ 162 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA 162 (405)
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 33455344589999999999999999999999998876643
No 435
>PRK13057 putative lipid kinase; Reviewed
Probab=23.59 E-value=84 Score=29.75 Aligned_cols=66 Identities=18% Similarity=0.146 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHH----hCCcEEec
Q psy15582 290 DKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIH----FGVPMIGI 365 (477)
Q Consensus 290 ~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~----~GvP~i~~ 365 (477)
.....+.+.+++.+ +.+........-. ....+.+ +. +..+.+|.-||-||+.|++. .++|+-++
T Consensus 13 ~~~~~i~~~l~~~g-~~~~~~~t~~~~~-------a~~~~~~--~~--~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgii 80 (287)
T PRK13057 13 AALAAARAALEAAG-LELVEPPAEDPDD-------LSEVIEA--YA--DGVDLVIVGGGDGTLNAAAPALVETGLPLGIL 80 (287)
T ss_pred hhHHHHHHHHHHcC-CeEEEEecCCHHH-------HHHHHHH--HH--cCCCEEEEECchHHHHHHHHHHhcCCCcEEEE
Confidence 34566777787776 6644433321100 0011111 22 45789999999999999863 46888899
Q ss_pred cC
Q psy15582 366 PF 367 (477)
Q Consensus 366 P~ 367 (477)
|.
T Consensus 81 P~ 82 (287)
T PRK13057 81 PL 82 (287)
T ss_pred CC
Confidence 95
No 436
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=23.32 E-value=65 Score=32.22 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=23.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
|.||+| +..+- --+.+|.+|+++|++|+++-.
T Consensus 1 ~~~vvI-IGaG~-----~G~~~A~~La~~g~~V~vle~ 32 (410)
T PRK12409 1 MSHIAV-IGAGI-----TGVTTAYALAQRGYQVTVFDR 32 (410)
T ss_pred CCEEEE-ECCCH-----HHHHHHHHHHHCCCeEEEEeC
Confidence 568877 44332 347788899999999998865
No 437
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=23.29 E-value=1.1e+02 Score=26.52 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=25.9
Q ss_pred cEEEEcCCCCCCcHHH-HHHHHHHHHhCCCEEEEEee
Q psy15582 31 NVLIICPTPSYSHQVP-FIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~-~l~la~~L~~rGH~V~~~~~ 66 (477)
|++|++.. .+|+..- +..||+.|.. ||+|.++-.
T Consensus 2 kilIvY~S-~~G~T~~iA~~Ia~~l~~-g~~v~~~~~ 36 (177)
T PRK11104 2 KTLILYSS-RDGQTRKIASYIASELKE-GIQCDVVNL 36 (177)
T ss_pred cEEEEEEC-CCChHHHHHHHHHHHhCC-CCeEEEEEh
Confidence 67775554 6688877 6778899887 999988765
No 438
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=23.29 E-value=1.1e+02 Score=29.74 Aligned_cols=38 Identities=8% Similarity=0.064 Sum_probs=33.2
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhC--CCEEEEEeecC
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRR--GHTVTMIGTDP 68 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~r--GH~V~~~~~~~ 68 (477)
+|||| +-..+.|++.-+.++.++|+++ +.+|++++...
T Consensus 1 mrILi-i~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~ 40 (348)
T PRK10916 1 MKILV-IGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAW 40 (348)
T ss_pred CcEEE-EccCcccHHHhHHHHHHHHHHHCCCCeEEEEechh
Confidence 38999 7778999999999999999996 88999998843
No 439
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=23.28 E-value=1.7e+02 Score=25.99 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=32.9
Q ss_pred ccccEEEEc-CCCCCCcHHHHHHHHHHHHh-CCCEEEEEeecCCC
Q psy15582 28 ESANVLIIC-PTPSYSHQVPFIAIGKELVR-RGHTVTMIGTDPLK 70 (477)
Q Consensus 28 ~~~kIL~~~-~~~~~GH~~~~l~la~~L~~-rGH~V~~~~~~~~~ 70 (477)
+..|++.++ +-+|-|-..-...||.+|++ .|++|.++-.+...
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 345554434 46789999999999999996 69999998876443
No 440
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=23.27 E-value=1.7e+02 Score=29.18 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCEEEEEeec
Q psy15582 46 PFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 46 ~~l~la~~L~~rGH~V~~~~~~ 67 (477)
-..++|++|.++|.+|+++...
T Consensus 213 ~g~~~a~~~~~~Ga~V~~~~g~ 234 (390)
T TIGR00521 213 MGLALAEAAYKRGADVTLITGP 234 (390)
T ss_pred HHHHHHHHHHHCCCEEEEeCCC
Confidence 3567999999999999998853
No 441
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.24 E-value=1.2e+02 Score=25.04 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=30.8
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
++|++ -+..+-+|-.-..-++..|.+.|++|..+..
T Consensus 2 ~~vvi-gtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~ 37 (134)
T TIGR01501 2 KTIVL-GVIGSDCHAVGNKILDHAFTNAGFNVVNLGV 37 (134)
T ss_pred CeEEE-EEecCChhhHhHHHHHHHHHHCCCEEEECCC
Confidence 57777 6778899999999999999999999887665
No 442
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=23.22 E-value=90 Score=30.19 Aligned_cols=33 Identities=30% Similarity=0.358 Sum_probs=25.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
+.||.| +..++ +--+||+.|++.||+|++...+
T Consensus 1 ~~kI~V-iGaGs-----wGTALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 1 MMKIAV-IGAGS-----WGTALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred CceEEE-EcCCh-----HHHHHHHHHHhcCCeeEEEecC
Confidence 457767 55555 4478999999999999999884
No 443
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=23.21 E-value=1.1e+02 Score=32.95 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=28.9
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
..|||++.|.|. -...-+=.....|+++||+|+++..
T Consensus 369 ~~rvLv~spHPD-Devi~~GGTlarl~~~G~~V~vv~~ 405 (652)
T PRK02122 369 PKRVIIFSPHPD-DDVISMGGTFRRLVEQGHDVHVAYQ 405 (652)
T ss_pred CceEEEEEeCCC-chHhhhHHHHHHHHHCCCcEEEEEe
Confidence 578999888886 3455555566788899999998777
No 444
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=23.19 E-value=1.2e+02 Score=29.23 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=26.0
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecC
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDP 68 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~ 68 (477)
..+||+| +..|+-| ..+|..|++.||+|+++....
T Consensus 4 ~~m~I~I-iG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGI-IGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEE-ECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 4458988 5655533 457788999999999998743
No 445
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=23.11 E-value=1.1e+03 Score=26.26 Aligned_cols=140 Identities=16% Similarity=0.210 Sum_probs=71.5
Q ss_pred CCCceEEeCccccCCC-C------CCChhhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEec
Q psy15582 240 VFPNTILLGPIHLNNP-K------PLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWE 312 (477)
Q Consensus 240 ~~~~~~~vG~~~~~~~-~------~~~~~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~ 312 (477)
+.|++..+|....-.. + ...+.+.+.++....|+.+|-.|...+.+....+.++.+.+..++ +
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~-p--------- 543 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRR-P--------- 543 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhC-c---------
Confidence 4456666665433221 1 112334444444347788888888887554334555544443321 1
Q ss_pred CCCCCCCCCCeEEeecCC-hhh--hhcCCCceEEEE--c-----CChhHHHHHHHhCCcEEeccC-CcchHHHHHHHHHc
Q psy15582 313 EDILPDLPSNVICRKWLP-QHD--ILAHPKVKLFIM--Q-----GGLQSSQEAIHFGVPMIGIPF-FADQDTNVRKLESM 381 (477)
Q Consensus 313 ~~~~~~~~~nv~i~~~vp-~~~--lL~h~~~~~~I~--h-----gG~~s~~Eal~~GvP~i~~P~-~~dQ~~na~~~~~~ 381 (477)
..+++|.+..-.+ ..+ +. +.||++.. . ||. |=+-|+.+|++.+.+-- +-++..+.
T Consensus 544 -----~~~~kVvfle~Yd~~lA~~Lv--aG~DvwLn~prrp~EAsGT-SgMKA~~NG~LnlSvlDGww~E~~~g------ 609 (778)
T cd04299 544 -----EFRGRIVFLEDYDMALARHLV--QGVDVWLNTPRRPLEASGT-SGMKAALNGGLNLSVLDGWWDEGYDG------ 609 (778)
T ss_pred -----CCCCcEEEEcCCCHHHHHHHH--hhhhhcccCCCCCCCCCcc-chHHHHHcCCeeeecccCccccccCC------
Confidence 2344555544322 222 23 56666642 2 565 44556669999997754 22333232
Q ss_pred CceEEccC----------CCCCHHHHHHHHHH
Q psy15582 382 DVARFLEY----------ENITAETLVTLMKS 403 (477)
Q Consensus 382 G~g~~l~~----------~~~~~~~l~~al~~ 403 (477)
+-|..+.. +..+++.|.+.|.+
T Consensus 610 ~nGwaig~~~~~~~~~~~d~~da~~Ly~~Le~ 641 (778)
T cd04299 610 ENGWAIGDGDEYEDDEYQDAEEAEALYDLLEN 641 (778)
T ss_pred CCceEeCCCccccChhhcchhhHHHHHHHHHH
Confidence 33444433 12567777777753
No 446
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=23.04 E-value=1.5e+02 Score=23.70 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=39.5
Q ss_pred CCCCchhhhccchhHHHHHHHHhhccccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 2 FDLQKPEMLASHSQLALILMAFLLTVESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
|+.++++-+..-++-.+ ........||+ +.+|.. +..+.-.+.+.|.++|-+|.+..+
T Consensus 32 W~~~~~~~l~~~~l~~l-----~~~~~~peili-iGtG~~-~~~~~~~~~~~l~~~gi~vevm~T 89 (114)
T cd05125 32 WNVSSFEDITEESLSLF-----ELLEPRPEILV-IGTGRK-SRPLSPELRKYFKKLGIAVEVVDT 89 (114)
T ss_pred cCCCChhhCCHHHHHHH-----HhccCCCCEEE-EccCCC-CCcCCHHHHHHHHHcCCEEEEECH
Confidence 56667666666554443 11122345777 676665 777777889999999999988777
No 447
>CHL00194 ycf39 Ycf39; Provisional
Probab=22.89 E-value=1.3e+02 Score=28.82 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=24.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
|||| + |+.|.+ ...++++|.++||+|+.++..
T Consensus 2 kIlV-t--GatG~i--G~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLV-I--GATGTL--GRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEE-E--CCCcHH--HHHHHHHHHHCCCeEEEEEcC
Confidence 6777 2 455654 456888999999999988763
No 448
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=22.86 E-value=2.4e+02 Score=27.10 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=21.7
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+||+| ++. ++ ...+..++|.++||++..+.+
T Consensus 1 mkIvf-~G~---~~--~a~~~L~~L~~~~~~i~~Vvt 31 (309)
T PRK00005 1 MRIVF-MGT---PE--FAVPSLKALLESGHEVVAVVT 31 (309)
T ss_pred CEEEE-ECC---CH--HHHHHHHHHHHCCCcEEEEEC
Confidence 37877 332 22 567888899888999886665
No 449
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=22.85 E-value=1.9e+02 Score=26.91 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=33.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCC
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLK 70 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~ 70 (477)
+|.| ..=||-|-..-+..||.+|+++|++|.++-.++..
T Consensus 2 ~i~~-~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~ 40 (268)
T TIGR01281 2 ILAV-YGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKH 40 (268)
T ss_pred EEEE-EcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 4666 47789999999999999999999999999887654
No 450
>KOG0991|consensus
Probab=22.84 E-value=1.6e+02 Score=27.05 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=29.5
Q ss_pred HHhhccccccEEEEcCCCCCCcHHHHHHHHHHHHh
Q psy15582 22 AFLLTVESANVLIICPTPSYSHQVPFIAIGKELVR 56 (477)
Q Consensus 22 ~~~~~~~~~kIL~~~~~~~~GH~~~~l~la~~L~~ 56 (477)
.+....+|+++++ ...||.|-....+.||.+|.-
T Consensus 41 via~~gnmP~lii-sGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 41 VIAKEGNMPNLII-SGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HHHHcCCCCceEe-eCCCCCchhhHHHHHHHHHhC
Confidence 3445689999988 899999999999999999974
No 451
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=22.84 E-value=1.7e+02 Score=26.95 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=34.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCC-CEEEEEeecCCCCCC
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRG-HTVTMIGTDPLKEPP 73 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rG-H~V~~~~~~~~~~~~ 73 (477)
||.| +.-+|.|-..-+-.++.+|.++| ++|..+-.+++...+
T Consensus 2 kIaI-~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAI-TGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLP 44 (255)
T ss_pred eEEE-ecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChH
Confidence 6777 88889999888888788888886 999999997755554
No 452
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=22.82 E-value=1.3e+02 Score=27.26 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=23.3
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+++|| + ++.|.+ ...+++.|.++|++|+.++.
T Consensus 2 ~~vlI-t--Ga~g~l--G~~l~~~l~~~g~~v~~~~r 33 (255)
T TIGR01963 2 KTALV-T--GAASGI--GLAIALALAAAGANVVVNDL 33 (255)
T ss_pred CEEEE-c--CCcchH--HHHHHHHHHHCCCEEEEEeC
Confidence 34555 2 455666 46889999999999888766
No 453
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=22.77 E-value=2.2e+02 Score=28.21 Aligned_cols=30 Identities=27% Similarity=0.373 Sum_probs=20.4
Q ss_pred CCceEEEEcCChhHHHHH---HH--------------------hCCcEEeccCC
Q psy15582 338 PKVKLFIMQGGLQSSQEA---IH--------------------FGVPMIGIPFF 368 (477)
Q Consensus 338 ~~~~~~I~hgG~~s~~Ea---l~--------------------~GvP~i~~P~~ 368 (477)
..+|++|.=||. |+..+ ++ .++|+|.+|..
T Consensus 84 ~~~D~IIavGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 84 EGCDFIISIGGG-SPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred cCCCEEEEeCCc-HHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 468888888884 44332 11 36899999974
No 454
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=22.77 E-value=77 Score=23.60 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCCEEEEEee
Q psy15582 47 FIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 47 ~l~la~~L~~rGH~V~~~~~ 66 (477)
+-.+.++|.++||+|.-+..
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~ 29 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLEN 29 (80)
T ss_pred chHHHHHHHHCCCEEEecCC
Confidence 34688999999999987765
No 455
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=22.75 E-value=2.7e+02 Score=27.30 Aligned_cols=112 Identities=8% Similarity=0.136 Sum_probs=64.6
Q ss_pred HHHHHhhCC-CceEEEEecCCCC--CCCCCCeEEeecCChhhhhcCCCceEEEE------cCChhHHHHHHHhCCcEEec
Q psy15582 295 IVDSFKQFP-RHRIIWKWEEDIL--PDLPSNVICRKWLPQHDILAHPKVKLFIM------QGGLQSSQEAIHFGVPMIGI 365 (477)
Q Consensus 295 i~~al~~~~-~~~~l~~~~~~~~--~~~~~nv~i~~~vp~~~lL~h~~~~~~I~------hgG~~s~~Eal~~GvP~i~~ 365 (477)
.+.++.+.+ +++++..++.+.. ....+..-+..|-+..+++.++.++++.. +-+.--+.+|+.+|+.+++=
T Consensus 17 h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~E 96 (343)
T TIGR01761 17 YLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQE 96 (343)
T ss_pred HHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEc
Confidence 455666655 5777776665321 11112111224566777887777777764 23346688899999999976
Q ss_pred -cCCcchHHHHHHH-HHcCceEEccCCCCCHHHHHHHHHHHhcCHHH
Q psy15582 366 -PFFADQDTNVRKL-ESMDVARFLEYENITAETLVTLMKSILYNETV 410 (477)
Q Consensus 366 -P~~~dQ~~na~~~-~~~G~g~~l~~~~~~~~~l~~al~~ll~~~~~ 410 (477)
|+..+|-.-...+ ++.|+=..+. .+.+ -..++++++++..+
T Consensus 97 KPla~~Ea~el~~~A~~~g~~l~v~--~f~p--~~~~vr~~i~~~~~ 139 (343)
T TIGR01761 97 HPLHPRDIQDLLRLAERQGRRYLVN--TFYP--HLPAVRRFIEYARQ 139 (343)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEE--ecCH--HHHHHHHHHHcchh
Confidence 8775454444433 4456555543 3333 44567777755533
No 456
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=22.68 E-value=5.9e+02 Score=24.21 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhCCCceEEEEecCCCCC-CCCCCeEEeecCChhhhhcCCCceEEEEcCC--hhHHHHH
Q psy15582 289 EDKRKAIVDSFKQFPRHRIIWKWEEDILP-DLPSNVICRKWLPQHDILAHPKVKLFIMQGG--LQSSQEA 355 (477)
Q Consensus 289 ~~~~~~i~~al~~~~~~~~l~~~~~~~~~-~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG--~~s~~Ea 355 (477)
...+..+.+++++++ .-+++..|..... ..... ...+..=..-.-..|+.++++.|+| ..=..|+
T Consensus 143 ~~~~~pi~~~a~~~g-vpv~ihtG~~~~~~~~~~~-~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 143 DPRLYPIYEAAEELG-VPVVIHTGAGPGGAGLEKG-HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred ChHHHHHHHHHHHcC-CCEEEEeCCCCCCcccccC-CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 344677888999988 8888866643221 11110 0111111122344699999999999 5444555
No 457
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=22.65 E-value=2.9e+02 Score=22.65 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=17.5
Q ss_pred ceE-EEEcCChhHHHHHHHh---------CC-cEEecc
Q psy15582 340 VKL-FIMQGGLQSSQEAIHF---------GV-PMIGIP 366 (477)
Q Consensus 340 ~~~-~I~hgG~~s~~Eal~~---------Gv-P~i~~P 366 (477)
+++ ++.-||.||.-|.... .+ |++++-
T Consensus 54 sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~ 91 (133)
T PF03641_consen 54 SDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLN 91 (133)
T ss_dssp ESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEE
T ss_pred CCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeC
Confidence 444 4578888998877543 34 888764
No 458
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=22.63 E-value=2.2e+02 Score=21.69 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=31.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCC
Q psy15582 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPL 69 (477)
Q Consensus 32 IL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~ 69 (477)
|.|.-.-+|-|-......+|..|+++|.+|.++-.+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 45545568889999999999999999999999987655
No 459
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=22.56 E-value=1.9e+02 Score=26.22 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=21.9
Q ss_pred ccccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEe
Q psy15582 26 TVESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIG 65 (477)
Q Consensus 26 ~~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~ 65 (477)
.....+||+ |.=|.||- +..|+++||+|+=+=
T Consensus 35 ~~~~~rvLv--PgCG~g~D------~~~La~~G~~VvGvD 66 (218)
T PF05724_consen 35 LKPGGRVLV--PGCGKGYD------MLWLAEQGHDVVGVD 66 (218)
T ss_dssp TSTSEEEEE--TTTTTSCH------HHHHHHTTEEEEEEE
T ss_pred CCCCCeEEE--eCCCChHH------HHHHHHCCCeEEEEe
Confidence 344567877 55577876 566788999986443
No 460
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=22.55 E-value=2.5e+02 Score=21.77 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=36.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHhC-CCEEEEEeecCCCCCCCCeeEEEccc
Q psy15582 32 VLIICPTPSYSHQVPFIAIGKELVRR-GHTVTMIGTDPLKEPPVNYTDIDLSF 83 (477)
Q Consensus 32 IL~~~~~~~~GH~~~~l~la~~L~~r-GH~V~~~~~~~~~~~~~~~~~~~~~~ 83 (477)
|.+.-+-+|.|-..-...||.+++++ |++|.++-.++.... .+-.+..++
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~--D~IIiDtpp 52 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD--DYVVVDLGR 52 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC--CEEEEeCCC
Confidence 34545567889999999999999998 999999977655443 344444443
No 461
>PRK06924 short chain dehydrogenase; Provisional
Probab=22.51 E-value=1.4e+02 Score=27.13 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=23.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
|+++|+ + |+.| .-..++|++|+++|++|.+++.
T Consensus 1 ~k~vlI-t--Gasg--giG~~ia~~l~~~g~~V~~~~r 33 (251)
T PRK06924 1 MRYVII-T--GTSQ--GLGEAIANQLLEKGTHVISISR 33 (251)
T ss_pred CcEEEE-e--cCCc--hHHHHHHHHHHhcCCEEEEEeC
Confidence 455666 3 3334 3456789999999999887765
No 462
>PRK06851 hypothetical protein; Provisional
Probab=22.42 E-value=1.6e+02 Score=29.08 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=33.5
Q ss_pred cccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 27 VESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 27 ~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
....|+.++...+|.|--.-+..+++++.+||.+|.++--
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 4556666658889999999999999999999999887544
No 463
>PHA02754 hypothetical protein; Provisional
Probab=22.39 E-value=1.3e+02 Score=20.52 Aligned_cols=25 Identities=0% Similarity=0.019 Sum_probs=19.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhhcC
Q psy15582 400 LMKSILYNETVYRKSQVYSKLSNTQ 424 (477)
Q Consensus 400 al~~ll~~~~~~~~a~~~~~~~~~~ 424 (477)
.+.+++.+.++++.|++++..+.++
T Consensus 6 Ei~k~i~eK~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 6 EIPKAIMEKDFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 3555666789999999999988763
No 464
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=22.35 E-value=2.7e+02 Score=29.39 Aligned_cols=76 Identities=13% Similarity=0.071 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhCCCceEEEEecCCCCC----CC--CCCeEEeecCCh-hhhh-------cCCCceEEEEcCChh-----
Q psy15582 290 DKRKAIVDSFKQFPRHRIIWKWEEDILP----DL--PSNVICRKWLPQ-HDIL-------AHPKVKLFIMQGGLQ----- 350 (477)
Q Consensus 290 ~~~~~i~~al~~~~~~~~l~~~~~~~~~----~~--~~nv~i~~~vp~-~~lL-------~h~~~~~~I~hgG~~----- 350 (477)
...+.+++.|++.+ .+.+..+.|.... .+ .++++++.-... .... .+.+..++++|.|-|
T Consensus 14 ~~~~~l~~~L~~~G-V~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l 92 (564)
T PRK08155 14 TGAELIVRLLERQG-IRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLV 92 (564)
T ss_pred cHHHHHHHHHHHcC-CCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHH
Confidence 45677888888888 8888888775422 11 124444432211 1111 124566777776654
Q ss_pred -HHHHHHHhCCcEEecc
Q psy15582 351 -SSQEAIHFGVPMIGIP 366 (477)
Q Consensus 351 -s~~Eal~~GvP~i~~P 366 (477)
.+.||...++|+|++.
T Consensus 93 ~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 93 TAIADARLDSIPLVCIT 109 (564)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 5899999999999874
No 465
>PRK12829 short chain dehydrogenase; Provisional
Probab=22.35 E-value=1.4e+02 Score=27.40 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=24.4
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+.+++|| + ++.|.+ ...+++.|.++||+|+.+..
T Consensus 10 ~~~~vlI-t--Ga~g~i--G~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 10 DGLRVLV-T--GGASGI--GRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred CCCEEEE-e--CCCCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 4467777 3 344555 57889999999999877664
No 466
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=22.32 E-value=2e+02 Score=27.45 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=33.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCCC
Q psy15582 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEP 72 (477)
Q Consensus 32 IL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~~ 72 (477)
|.| +.-||-|-..-...||..|+++|++|.++-.++....
T Consensus 3 Iav-~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~ 42 (296)
T TIGR02016 3 IAI-YGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDS 42 (296)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCc
Confidence 444 5778999999999999999999999999988765543
No 467
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=22.30 E-value=96 Score=29.74 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=33.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhC--CCEEEEEeecCC
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRR--GHTVTMIGTDPL 69 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~r--GH~V~~~~~~~~ 69 (477)
|||| +-..+.|++.-+.++.++|+++ +.+|++++....
T Consensus 1 ~ILi-ir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~ 40 (319)
T TIGR02193 1 RILI-VKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGF 40 (319)
T ss_pred CEEE-EecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhH
Confidence 6888 6778999999999999999998 899999998443
No 468
>PRK11269 glyoxylate carboligase; Provisional
Probab=22.30 E-value=4.8e+02 Score=27.69 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=21.7
Q ss_pred CceEEEEcCC------hhHHHHHHHhCCcEEecc
Q psy15582 339 KVKLFIMQGG------LQSSQEAIHFGVPMIGIP 366 (477)
Q Consensus 339 ~~~~~I~hgG------~~s~~Eal~~GvP~i~~P 366 (477)
+..+++.+.| .+.+.||...++|+|++.
T Consensus 68 ~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 68 NIGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 3556666666 577999999999999874
No 469
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=22.21 E-value=1.4e+02 Score=26.36 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=25.1
Q ss_pred cccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 27 VESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 27 ~~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
..|.|||++.+.|..+|-.-...+.+ .++.+++|++.-.
T Consensus 3 ~~~~kiLiI~aHP~~~~S~~n~~l~~-~~~~~~~v~~~DL 41 (184)
T PRK04930 3 SQPPKVLLLYAHPESQDSVANRVLLK-PAQQLEHVTVHDL 41 (184)
T ss_pred CCCCEEEEEECCCCcccCHHHHHHHH-HHHcCCceEEEEC
Confidence 35789999888887655444444444 4456777776544
No 470
>PRK13059 putative lipid kinase; Reviewed
Probab=22.11 E-value=88 Score=29.80 Aligned_cols=66 Identities=9% Similarity=0.098 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEeecCChhhhhcCCCceEEEEcCChhHHHHHHH------hCCcEE
Q psy15582 290 DKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIH------FGVPMI 363 (477)
Q Consensus 290 ~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~------~GvP~i 363 (477)
+..+.+.+.+.+.+ .++........ . .. ... . +... ...+.+|.-||-||+.|++. .++|+-
T Consensus 19 ~~~~~i~~~l~~~g-~~~~~~~~~~~-~----~~---~~~-~-~~~~-~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lg 86 (295)
T PRK13059 19 SELDKVIRIHQEKG-YLVVPYRISLE-Y----DL---KNA-F-KDID-ESYKYILIAGGDGTVDNVVNAMKKLNIDLPIG 86 (295)
T ss_pred HHHHHHHHHHHHCC-cEEEEEEccCc-c----hH---HHH-H-HHhh-cCCCEEEEECCccHHHHHHHHHHhcCCCCcEE
Confidence 44566777888777 66543222110 0 00 000 1 1122 45789999999999998852 347888
Q ss_pred eccC
Q psy15582 364 GIPF 367 (477)
Q Consensus 364 ~~P~ 367 (477)
++|.
T Consensus 87 viP~ 90 (295)
T PRK13059 87 ILPV 90 (295)
T ss_pred EECC
Confidence 9996
No 471
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=22.03 E-value=5.6e+02 Score=25.08 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=42.8
Q ss_pred CCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecC-----CCCCCCCCCeEEeecCChhhhhcCCCceEEE
Q psy15582 270 KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEE-----DILPDLPSNVICRKWLPQHDILAHPKVKLFI 344 (477)
Q Consensus 270 ~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~-----~~~~~~~~nv~i~~~vp~~~lL~h~~~~~~I 344 (477)
.+..|.+-+-|... .+.++++.+|.. .| .++=..+.| +..+++.+|+++.+.|..- |.| ++++.
T Consensus 199 ~~a~I~~K~NsL~D-----~~iI~~Ly~AS~-AG-V~I~LiVRGiCcL~Pgi~g~SeNI~V~SIVgRf--LEH--sRi~~ 267 (352)
T PF13090_consen 199 KPARIIAKMNSLTD-----PEIIDKLYEASQ-AG-VKIDLIVRGICCLRPGIPGLSENIRVISIVGRF--LEH--SRIYY 267 (352)
T ss_dssp S-EEEEEEES-B-------HHHHHHHHHHHH-TT-EEEEEEESS-B-C-TTSCTCCTTEEEEEE-SSS--EE----EEEE
T ss_pred CCcEEEEEecCCCC-----HHHHHHHHHHHh-CC-CEEEEEEecccccCCCCCCCCCCEEEEEecccc--cch--hheee
Confidence 45578888777765 788888888864 46 665555554 3455788999999988764 877 66666
Q ss_pred EcCC
Q psy15582 345 MQGG 348 (477)
Q Consensus 345 ~hgG 348 (477)
-|.|
T Consensus 268 F~n~ 271 (352)
T PF13090_consen 268 FGNG 271 (352)
T ss_dssp E-GC
T ss_pred ecCC
Confidence 5554
No 472
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=22.02 E-value=1.5e+02 Score=26.76 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=23.2
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
++||| + ++.|.+ ...+++.|.++|++|+.+..
T Consensus 7 ~~ilI-t--Gasg~i--G~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 7 RVALV-T--GAARGI--GRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CEEEE-c--CCCCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 35555 2 345665 67889999999999887765
No 473
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=21.99 E-value=8e+02 Score=24.48 Aligned_cols=106 Identities=15% Similarity=0.103 Sum_probs=63.4
Q ss_pred EEeecCChhhhhcCCCceEEEEcCChhHHHHHHHhCCcEEeccCCcchHHHHHH----HHHcCceEEccCCCCCHHHHHH
Q psy15582 324 ICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRK----LESMDVARFLEYENITAETLVT 399 (477)
Q Consensus 324 ~i~~~vp~~~lL~h~~~~~~I~hgG~~s~~Eal~~GvP~i~~P~~~dQ~~na~~----~~~~G~g~~l~~~~~~~~~l~~ 399 (477)
.+.+..+-.++| +.+|++||-=. ....|.+...+|++..-.-.||....+= .+...=|..+. +.+++.+
T Consensus 273 ~vs~~~di~dll--~~sDiLITDyS-Sv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~----~~~~li~ 345 (388)
T COG1887 273 DVSDNADINDLL--LVSDILITDYS-SVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVE----TQEELID 345 (388)
T ss_pred ecccchhHHHHH--hhhCEEEeech-HHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccc----cHHHHHH
Confidence 344556667889 66999999865 4588999999999977544555511110 11112233333 6778888
Q ss_pred HHHHHhcCH-HHHHHHHHHHHHhhcC-CCChHHHHHHHH
Q psy15582 400 LMKSILYNE-TVYRKSQVYSKLSNTQ-MMSPKDTAVWWI 436 (477)
Q Consensus 400 al~~ll~~~-~~~~~a~~~~~~~~~~-~~~~~~~a~~~i 436 (477)
+|.....++ .+.++.+...+++... -....++.++.+
T Consensus 346 ai~~~~~~~~~~~~k~~~~~~~~~~~~dg~ss~ri~~~i 384 (388)
T COG1887 346 AIKPYDEDGNYDLEKLRVFNDKFNSYEDGRSSERILKLI 384 (388)
T ss_pred HHHhhhcccchhHHHHHHHHHhhcccccccHHHHHHHHH
Confidence 888888753 3444555555555432 134445555444
No 474
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=21.97 E-value=1.2e+02 Score=22.05 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEeec
Q psy15582 45 VPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 45 ~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
.-.+.+|..|+++|.+|+++...
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHHhCcEEEEEecc
Confidence 35688999999999999999883
No 475
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=21.87 E-value=2.4e+02 Score=27.40 Aligned_cols=42 Identities=29% Similarity=0.521 Sum_probs=30.8
Q ss_pred CCceEEEEcCChhHHHHHHHh---CCcEEeccC--------CcchHHHHHHHH
Q psy15582 338 PKVKLFIMQGGLQSSQEAIHF---GVPMIGIPF--------FADQDTNVRKLE 379 (477)
Q Consensus 338 ~~~~~~I~hgG~~s~~Eal~~---GvP~i~~P~--------~~dQ~~na~~~~ 379 (477)
..+++.+.-||-||....+.. .+|++++|. +.=++.-|.++.
T Consensus 99 ~gVdlIvfaGGDGTarDVa~av~~~vPvLGipaGvk~~SgvfA~~P~~aa~l~ 151 (355)
T COG3199 99 RGVDLIVFAGGDGTARDVAEAVGADVPVLGIPAGVKNYSGVFALSPEDAARLL 151 (355)
T ss_pred cCceEEEEeCCCccHHHHHhhccCCCceEeeccccceeccccccChHHHHHHH
Confidence 469999999999996666555 999999994 234555555543
No 476
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=21.80 E-value=91 Score=25.22 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=22.9
Q ss_pred ceEEEEcCChhHHHHHHHh----C-----CcEEeccCC
Q psy15582 340 VKLFIMQGGLQSSQEAIHF----G-----VPMIGIPFF 368 (477)
Q Consensus 340 ~~~~I~hgG~~s~~Eal~~----G-----vP~i~~P~~ 368 (477)
.+.+|.-||-||+.|++.. + .|+.++|..
T Consensus 50 ~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 50 FDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLG 87 (124)
T ss_pred CCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCC
Confidence 5688999999999998652 3 577788974
No 477
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=21.74 E-value=83 Score=29.85 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=22.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
||.| +.. |.+ ...+|..|++.||+|+++..
T Consensus 2 ~I~I-iG~---G~~--G~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 2 KIAI-LGA---GAI--GGLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred EEEE-ECC---CHH--HHHHHHHHHhCCCeEEEEEC
Confidence 6766 443 444 36788999999999999987
No 478
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=21.70 E-value=1.1e+02 Score=25.05 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=17.5
Q ss_pred CCceEEEEcCC-----hhHHHH---HHHhCCcEEec
Q psy15582 338 PKVKLFIMQGG-----LQSSQE---AIHFGVPMIGI 365 (477)
Q Consensus 338 ~~~~~~I~hgG-----~~s~~E---al~~GvP~i~~ 365 (477)
.++|++|-.=| ||+-+. |++.|+|.|++
T Consensus 71 ~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~l 106 (141)
T PF11071_consen 71 EKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITL 106 (141)
T ss_pred hhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEe
Confidence 34666665555 355444 46788998877
No 479
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.61 E-value=5.1e+02 Score=27.29 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=22.6
Q ss_pred CCceEEEEcCChh------HHHHHHHhCCcEEecc
Q psy15582 338 PKVKLFIMQGGLQ------SSQEAIHFGVPMIGIP 366 (477)
Q Consensus 338 ~~~~~~I~hgG~~------s~~Eal~~GvP~i~~P 366 (477)
.+..++++|.|-| .+.||...++|+|++.
T Consensus 66 g~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 66 GKVGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3466777777764 4889999999999874
No 480
>KOG1210|consensus
Probab=21.54 E-value=1.9e+02 Score=27.79 Aligned_cols=32 Identities=28% Similarity=0.306 Sum_probs=24.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
||++ ..++.| -.+++|.+++.+|++|++....
T Consensus 35 hi~i--tggS~g---lgl~la~e~~~~ga~Vti~ar~ 66 (331)
T KOG1210|consen 35 HILI--TGGSSG---LGLALALECKREGADVTITARS 66 (331)
T ss_pred eEEE--ecCcch---hhHHHHHHHHHccCceEEEecc
Confidence 5544 334433 5689999999999999999884
No 481
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=21.54 E-value=1.3e+02 Score=24.99 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=25.6
Q ss_pred ccEEEEcCCC-CCCcHHHHHHH-HHHHHhCCCEEEEEee
Q psy15582 30 ANVLIICPTP-SYSHQVPFIAI-GKELVRRGHTVTMIGT 66 (477)
Q Consensus 30 ~kIL~~~~~~-~~GH~~~~l~l-a~~L~~rGH~V~~~~~ 66 (477)
+||+++...+ ..|+...+... ++.|.++|++|.++..
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l 39 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDL 39 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEEC
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 4888877766 45776665554 5556667999988865
No 482
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=21.52 E-value=1.1e+02 Score=29.61 Aligned_cols=32 Identities=28% Similarity=0.328 Sum_probs=24.0
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
|.||.| +..|.- ...+|..|+++||+|+++..
T Consensus 2 ~mkI~I-iG~G~m-----G~~~A~~L~~~G~~V~~~~r 33 (341)
T PRK08229 2 MARICV-LGAGSI-----GCYLGGRLAAAGADVTLIGR 33 (341)
T ss_pred CceEEE-ECCCHH-----HHHHHHHHHhcCCcEEEEec
Confidence 457877 554432 35788899999999999876
No 483
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=21.47 E-value=1.3e+02 Score=22.73 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 43 HQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 43 H~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+..+...|-.-|++.||+|.+.-.
T Consensus 23 rt~RL~GLqa~L~~dGh~v~L~~~ 46 (88)
T PF15092_consen 23 RTFRLEGLQAVLAKDGHEVILEKI 46 (88)
T ss_pred hHHHHHHHHHHHHhCCcEEEEEEe
Confidence 567888999999999999998777
No 484
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=21.40 E-value=1.7e+02 Score=26.74 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=31.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCC
Q psy15582 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPL 69 (477)
Q Consensus 32 IL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~ 69 (477)
|.|...-||-|=..-+..||.+|+++|++|.++-.++.
T Consensus 3 i~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 40 (251)
T TIGR01969 3 ITIASGKGGTGKTTITANLGVALAKLGKKVLALDADIT 40 (251)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 44545568899999999999999999999999887653
No 485
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=21.31 E-value=1.3e+02 Score=29.09 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=25.7
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeec
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~ 67 (477)
++.||.| +..|. ...++|..|+++||+|+++...
T Consensus 3 ~~m~I~i-IG~G~-----mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 3 HGMRVAV-LGAGA-----WGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCCeEEE-ECcCH-----HHHHHHHHHHHCCCeEEEEeCC
Confidence 4568877 55443 3467899999999999998873
No 486
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=21.26 E-value=3.1e+02 Score=19.36 Aligned_cols=50 Identities=10% Similarity=0.130 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q psy15582 393 TAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVLKA 442 (477)
Q Consensus 393 ~~~~l~~al~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~~ 442 (477)
+.+.+...+.+.-.++..++++.++++=+...+......+..+++.+...
T Consensus 15 s~~~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~~I~~S 64 (67)
T cd00633 15 SEEEYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLEKILAS 64 (67)
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHcC
Confidence 77889999999988899999999999988877666677777777777643
No 487
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=21.25 E-value=1.8e+02 Score=25.32 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=30.2
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEe
Q psy15582 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIG 65 (477)
Q Consensus 30 ~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~ 65 (477)
++++++.+.+|.|=..-+..|++.|..+|++|.+..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 38 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTR 38 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 355666888899999999999999999999986543
No 488
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.19 E-value=5.5e+02 Score=27.09 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=43.4
Q ss_pred HHHHHHHHhhCCCceEEEEecCCCCC----CC--CCCeEEeecCCh-hhhh-------cCCCceEEEEcCCh------hH
Q psy15582 292 RKAIVDSFKQFPRHRIIWKWEEDILP----DL--PSNVICRKWLPQ-HDIL-------AHPKVKLFIMQGGL------QS 351 (477)
Q Consensus 292 ~~~i~~al~~~~~~~~l~~~~~~~~~----~~--~~nv~i~~~vp~-~~lL-------~h~~~~~~I~hgG~------~s 351 (477)
.+.+++.|++.+ .+.++...|.... .+ .+++.+..-... ...+ .+.+..+++.|.|- +.
T Consensus 7 a~~l~~~L~~~G-v~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~g 85 (574)
T PRK06466 7 AEMLVRALRDEG-VEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATNAITG 85 (574)
T ss_pred HHHHHHHHHHcC-CCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHH
Confidence 455677777777 7777776664321 11 123444332211 1111 12346777887766 45
Q ss_pred HHHHHHhCCcEEecc
Q psy15582 352 SQEAIHFGVPMIGIP 366 (477)
Q Consensus 352 ~~Eal~~GvP~i~~P 366 (477)
+.+|...++|+|++.
T Consensus 86 l~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 86 IATAYMDSIPMVVLS 100 (574)
T ss_pred HHHHHhcCCCEEEEe
Confidence 899999999999874
No 489
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=21.18 E-value=1.7e+02 Score=26.71 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCCEEEEEeec
Q psy15582 47 FIAIGKELVRRGHTVTMIGTD 67 (477)
Q Consensus 47 ~l~la~~L~~rGH~V~~~~~~ 67 (477)
+..--..|.+.|++|+++++.
T Consensus 27 ~~~p~~~l~~aG~~VdiaS~~ 47 (231)
T cd03147 27 ALHPFNVFREAGFEVDFVSET 47 (231)
T ss_pred HHHHHHHHHHCCCEEEEECCC
Confidence 344467888999999999984
No 490
>PRK08181 transposase; Validated
Probab=21.12 E-value=1.4e+02 Score=28.13 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=30.1
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
+..++++ ++.+|.|=..-+.++++++.++|+.|.|++.
T Consensus 105 ~~~nlll-~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 105 KGANLLL-FGPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred cCceEEE-EecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 3445555 8888888888889999999999999877754
No 491
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=21.03 E-value=3e+02 Score=23.52 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=23.4
Q ss_pred eEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEE
Q psy15582 273 VIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIW 309 (477)
Q Consensus 273 ~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~ 309 (477)
.||+++||+.. -+.+.++..++.+.+.+..+++.
T Consensus 3 ~v~i~lGSN~g---~~~~~l~~A~~~L~~~~~~~i~~ 36 (159)
T PRK10239 3 VAYIAIGSNLA---SPLEQVNAALKALGDIPESRILA 36 (159)
T ss_pred EEEEEEeCchh---hHHHHHHHHHHHHhcCCCCeEEE
Confidence 68999999975 25666777777776665344443
No 492
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=20.98 E-value=1.8e+02 Score=27.21 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=34.0
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecCCCC
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE 71 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~~~~ 71 (477)
|+.|-| ..-||-|-..-...||-+|+++|.+|.++-.++...
T Consensus 1 ~~~iav-~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~ 42 (273)
T PRK13232 1 MRQIAI-YGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKAD 42 (273)
T ss_pred CCEEEE-ECCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccc
Confidence 534445 477899999999999999999999999998765543
No 493
>PRK13555 azoreductase; Provisional
Probab=20.91 E-value=1.6e+02 Score=26.40 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=25.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHH----HHHhCC--CEEEEEeec
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGK----ELVRRG--HTVTMIGTD 67 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~----~L~~rG--H~V~~~~~~ 67 (477)
|.|||++.+.|-.++-+-..+|++ ++.++| |+|+..-..
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~ 45 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLF 45 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 779999778764334455555554 455555 888877663
No 494
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=20.89 E-value=1.3e+02 Score=26.09 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=34.6
Q ss_pred CChhHHHHHH--HhCCcEEeccCCcchHHHHHHHHHcCceEEccCCCCCHHHHHHHHHHH
Q psy15582 347 GGLQSSQEAI--HFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSI 404 (477)
Q Consensus 347 gG~~s~~Eal--~~GvP~i~~P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~al~~l 404 (477)
|.-.+-.+.+ ..|+|-=-+=++.|+..|...+.+.|+--+.-++.++.+.+.+.+++-
T Consensus 107 gsK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~~gL~~~ 166 (169)
T PF12689_consen 107 GSKTTHFRRIHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFERGLEKF 166 (169)
T ss_dssp S-HHHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHHHHHHH
T ss_pred CchHHHHHHHHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHHHHHHHHHH
Confidence 3444445544 477774444457899999999998998876666788988888887653
No 495
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=20.85 E-value=1.9e+02 Score=23.72 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=30.0
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecC
Q psy15582 33 LIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDP 68 (477)
Q Consensus 33 L~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~ 68 (477)
.+|++..+.|-..-...+++.|.++|.+|.++-+..
T Consensus 2 ~~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~ 37 (134)
T cd03109 2 MGFGTGTDIGKTVATAILARALKEKGYRVAPLKPVQ 37 (134)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 344566678999999999999999999999998843
No 496
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=20.78 E-value=2.2e+02 Score=22.17 Aligned_cols=52 Identities=17% Similarity=0.063 Sum_probs=35.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEeecC--CCCCCCCeeEEEccc
Q psy15582 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDP--LKEPPVNYTDIDLSF 83 (477)
Q Consensus 31 kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~~~--~~~~~~~~~~~~~~~ 83 (477)
|||+ +|.+|.+=..-...+-+.+.++|-++.+..... ......+++.+-+.+
T Consensus 2 ~Ill-~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~P 55 (99)
T cd05565 2 NVLV-LCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAP 55 (99)
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcC
Confidence 6888 556667777778888889999999988765522 122345566665554
No 497
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=20.76 E-value=1.3e+02 Score=29.34 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=26.9
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 38 TPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 38 ~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
.||.|-.--.+.||+.|.++|+.|.+++.
T Consensus 66 vGGTGKTP~v~~La~~l~~~G~~~~IlSR 94 (338)
T PRK01906 66 VGGTGKTPTVIALVDALRAAGFTPGVVSR 94 (338)
T ss_pred CCCCChHHHHHHHHHHHHHcCCceEEEec
Confidence 47899999999999999999999999998
No 498
>PRK06526 transposase; Provisional
Probab=20.75 E-value=89 Score=29.09 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=30.2
Q ss_pred ccccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 28 ESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 28 ~~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
...++++ ++.+|.|=..-+.+|+.++.++|+.|.|.+.
T Consensus 97 ~~~nlll-~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 97 GKENVVF-LGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred cCceEEE-EeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 3445555 8888999999999999999999999877433
No 499
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=20.70 E-value=3.4e+02 Score=24.03 Aligned_cols=57 Identities=12% Similarity=0.295 Sum_probs=41.9
Q ss_pred hhhHhhhhcCCCceEEEecCCcccCCcccHHHHHHHHHHHhhCCCceEEEEecCCCCCCCCCCeEEee
Q psy15582 260 QNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRK 327 (477)
Q Consensus 260 ~~l~~~l~~~~~~~V~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~~~l~~~~~~~~~~~~~nv~i~~ 327 (477)
+++.+++.+.+-.+..++ .|.+..++.++.|-+.+ .+-||.+.+-.+ ..|++|.+..
T Consensus 136 d~le~~v~~~dv~iaiLt---------VPa~~AQ~vad~Lv~aG-VkGIlNFtPv~l-~~pe~V~V~~ 192 (211)
T COG2344 136 DDLEKFVKKNDVEIAILT---------VPAEHAQEVADRLVKAG-VKGILNFTPVRL-QVPEGVIVEN 192 (211)
T ss_pred HHHHHHHHhcCccEEEEE---------ccHHHHHHHHHHHHHcC-CceEEeccceEe-cCCCCcEEEE
Confidence 467777776444444444 48899999999999999 999999987544 3577777653
No 500
>PRK12827 short chain dehydrogenase; Provisional
Probab=20.61 E-value=1.5e+02 Score=26.79 Aligned_cols=33 Identities=27% Similarity=0.212 Sum_probs=23.4
Q ss_pred cccEEEEcCCCCCCcHHHHHHHHHHHHhCCCEEEEEee
Q psy15582 29 SANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGT 66 (477)
Q Consensus 29 ~~kIL~~~~~~~~GH~~~~l~la~~L~~rGH~V~~~~~ 66 (477)
.++||| + ++.|.+ ...+|+.|.++||+|+++..
T Consensus 6 ~~~ilI-t--Gasg~i--G~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 6 SRRVLI-T--GGSGGL--GRAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCEEEE-E--CCCChH--HHHHHHHHHHCCCeEEEEcC
Confidence 346666 3 344555 46889999999999887654
Done!