RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15582
(477 letters)
>gnl|CDD|223071 PHA03392, egt, ecdysteroid UDP-glucosyltransferase; Provisional.
Length = 507
Score = 230 bits (590), Expect = 6e-70
Identities = 131/497 (26%), Positives = 236/497 (47%), Gaps = 62/497 (12%)
Query: 18 LILMAFLLTVESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPL----KEPP 73
L+L+ L V +A +L + PTP+YSH F + L RGH VT+I
Sbjct: 9 LLLLLLLSGVRAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLC 68
Query: 74 VNYTDIDLSFSYKYFKPQLQKGEVLPDAVDNQRRLTGYEFIVN----IGRITIAYTEDQL 129
N T+ID S S +YFK +L K AV +R + V +G + + DQ
Sbjct: 69 GNITEIDASLSVEYFK-KLVKSS----AVFRKRGVVADSSTVTADNYMGLVRM--ISDQF 121
Query: 130 KSQQMQQFFKYIDENHVKFDLIIYEGLL-HTAYLGFL----------------------- 165
++ I + KFDL++ E L + L
Sbjct: 122 DLPNVKNL---IANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETMG 178
Query: 166 ---------PKLGYT--QSMTLMERMNNLFM--QLYSKFYIRSRLMKKQDEIMERYFGTR 212
P L + ++ + E +N ++ +LY++F S L +Q++++++ FG
Sbjct: 179 AVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEF---SLLADEQNKLLKQQFGPD 235
Query: 213 GLSGKQLEENKTLLFISTSWLLTYPRPVFPNTILLGPIHLNN--PKPLPQNLKDWIEGAK 270
+ ++L LLF++ + RPV P+ LG +HL+ P+PL L++++ +
Sbjct: 236 TPTIRELRNRVQLLFVNVHPVFDNNRPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNST 295
Query: 271 DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDI-LPDLPSNVICRKWL 329
+GV+Y S G+++ + + + + ++ +FK+ P ++WK++ ++ +LP+NV+ +KW
Sbjct: 296 NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPY-NVLWKYDGEVEAINLPANVLTQKWF 354
Query: 330 PQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEY 389
PQ +L H VK F+ QGG+QS+ EAI VPM+G+P DQ N K + + R L+
Sbjct: 355 PQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDT 414
Query: 390 ENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVWWIEYVLKAEGNVDHL 449
++A LV + ++ N + + L Q M+P A+W+ E+V++ + L
Sbjct: 415 VTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIRNKHGNTSL 474
Query: 450 KYNLDQIPWYQYYLVDL 466
K + + Y++ +
Sbjct: 475 KTKAANVSYSDYFMSYI 491
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 177 bits (451), Expect = 5e-50
Identities = 95/300 (31%), Positives = 161/300 (53%), Gaps = 7/300 (2%)
Query: 174 MTLMERMNNLFMQLYSKFYIRSRLMKKQDEIMERYFGTRGLSGKQLEENKTLLFISTSWL 233
MT ER+ N+ + LY F+ + R KK D+ G + + + L + W
Sbjct: 180 MTFGERVKNMLIMLYFDFWFQ-RFPKKWDQFASELLGRPVTLPELMSKASAWL-LRNYWD 237
Query: 234 LTYPRPVFPNTILLGPIHLNNPKPLPQNLKDWIEGAKD-GVIYFSLGTNMQSASLQEDKR 292
L +PRP+ PN +G ++ KPLPQ ++ +++ + + GV+ FSLG+ M S + E+K
Sbjct: 238 LEFPRPLLPNMEFIGGLNCKPAKPLPQEMEAFVQSSGEHGVVVFSLGS-MVSN-IPEEKA 295
Query: 293 KAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSS 352
I + Q P+ +++W+++ L N KWLPQ+D+L HPK + F+ G
Sbjct: 296 NEIASALAQIPQ-KVLWRFDGTKPSTLGRNTRLVKWLPQNDLLGHPKTRAFVTHAGSNGV 354
Query: 353 QEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYR 412
EAI GVPM+G+P F DQ N + +E+ A L +T+E L+ +K+++ + +
Sbjct: 355 YEAICHGVPMVGMPLFGDQMDNAKHMEAKGAAVTLNVLTMTSEDLLNALKTVINDPSYKE 414
Query: 413 KSQVYSKLSNTQMMSPKDTAVWWIEYVLKAEGNVDHLKYNLDQIPWYQYYLVDLAGIFIA 472
S + + Q + P D AV+WIE+V++ +G HL+ + WYQY+ +D+ G +A
Sbjct: 415 NIMRLSSIHHDQPVKPLDRAVFWIEFVMRHKG-AKHLRPAAHDLTWYQYHSLDVIGFLLA 473
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics.
Length = 401
Score = 105 bits (264), Expect = 9e-25
Identities = 74/400 (18%), Positives = 121/400 (30%), Gaps = 56/400 (14%)
Query: 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE-------PPVNY-TDIDLS 82
VLI S P +A+ L GH V + + V D D
Sbjct: 2 RVLITT-IGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAGLEFVPVGGDPD-- 58
Query: 83 FSYKYFKPQLQKGEVLPDAVDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYID 142
+L + + + R A +D + + +
Sbjct: 59 --------ELLASPERNAGLLLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGP----- 105
Query: 143 ENHVKFDLIIYEGLLHTAYLGFL--PKLG------YTQSMTLMERMNNLFMQLYSKFYIR 194
DL++ + L A+ G + LG T + + Y
Sbjct: 106 ------DLVVADPL---AFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPLGRANLRLYAL 156
Query: 195 SRLMKKQDEIMERY------FGTRGLSGKQLEENKTLLFISTSWL-LTYPRPVFPNTILL 247
QD + G LS + L S + L P F
Sbjct: 157 LEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPPDWPRFDLVTGY 216
Query: 248 GPIHLNNPKPLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRI 307
G + P P L ++ A +Y G+ M E + V+ R
Sbjct: 217 GFRDVPYNGPPPPELWLFLA-AGRPPVYVGFGS-MVVRDP-EALARLDVE-AVATLGQRA 272
Query: 308 IWK--WEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGI 365
I W DLP NV ++P +L P+ + GG ++ A+ GVP + +
Sbjct: 273 ILSLGWGGLGAEDLPDNVRVVDFVPHDWLL--PRCAAVVHHGGAGTTAAALRAGVPQLVV 330
Query: 366 PFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSIL 405
PFF DQ ++ + L+ +TAE L ++ +L
Sbjct: 331 PFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLL 370
>gnl|CDD|233407 TIGR01426, MGT, glycosyltransferase, MGT family. This model
describes the MGT (macroside glycosyltransferase)
subfamily of the UDP-glucuronosyltransferase family.
Members include a number of glucosyl transferases for
macrolide antibiotic inactivation, but also include
transferases of glucose-related sugars for macrolide
antibiotic production [Cellular processes, Toxin
production and resistance].
Length = 392
Score = 100 bits (251), Expect = 4e-23
Identities = 92/396 (23%), Positives = 142/396 (35%), Gaps = 87/396 (21%)
Query: 39 PSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEP-------PVNYTDIDLSFSYKYFKPQ 91
P++ H P + + +ELV RGH VT T+ E V Y
Sbjct: 4 PAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAAGAEFVLYGSAL----------- 52
Query: 92 LQKGEVLPDAVDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDLI 151
DN T E I I ++ + ED L Q+++ Y + + DLI
Sbjct: 53 --------PPPDNPPENTEEEPIDIIEKL-LDEAEDVL--PQLEE--AYKGD---RPDLI 96
Query: 152 IYEGLLHTAYLGFLPKLGYTQSMTLMERMNNLFMQLYSKFYIRSRLMKKQ--------DE 203
+Y+ T L L + + + + F + +E
Sbjct: 97 VYDIASWTGRL-------------LARKWDVPVISSFPTFAANEEFEEMVSPAGEGSAEE 143
Query: 204 IMERYFGTRGLSGKQ---LEENKT-------LLFISTSWLLTY-PRPVFPNT-------I 245
G + LEE+ L L Y P+ P
Sbjct: 144 GAIAERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFT 203
Query: 246 LLGPIHLNNPKPLPQNLKDW-IEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPR 304
+GP + W G V+ SLGT + Q + V++F+
Sbjct: 204 FVGP-----CIGDRKEDGSWERPGDGRPVVLISLGT---VFNNQPSFYRTCVEAFRDLDW 255
Query: 305 HRII---WKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVP 361
H ++ + L +LP NV R+W+PQ +IL K FI GG+ S+ EA+ GVP
Sbjct: 256 HVVLSVGRGVDPADLGELPPNVEVRQWVPQLEIL--KKADAFITHGGMNSTMEALFNGVP 313
Query: 362 MIGIPFFADQDTNVRKLESMDVARFLEYENITAETL 397
M+ +P ADQ R++ + + R L E +TAE L
Sbjct: 314 MVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKL 349
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 97.1 bits (242), Expect = 6e-22
Identities = 80/426 (18%), Positives = 145/426 (34%), Gaps = 63/426 (14%)
Query: 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEPPVNYTDIDLSFSYKYFKPQ 91
+ ++C +Y H P +A+GKEL RRGH V S FK
Sbjct: 5 LFVVCG--AYGHVNPCLALGKELRRRGHEVVFA-------------------STGKFKEF 43
Query: 92 LQK-GEVLPDAVDNQRRLTGYEFIVNIGR-ITIAYTEDQLKSQQMQQFFKYIDENHVKFD 149
++ G L + + + + +++ + + + E + D
Sbjct: 44 VEAAGLAFVAYPIRDSELATEDGKFAGVKSFRRLLQQFKKLIRELLELLREL-EPDLVVD 102
Query: 150 LIIYEGLLHTAYLG-------------------FLPKLGYTQSMTLMERMNNLFMQLYSK 190
L LG LP +G + + +
Sbjct: 103 DARLSLGLAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLPIPLY-PLPPRLVRPL 161
Query: 191 FYIRSRLMKKQDEIMERYFGTRGLSGKQLEENKTLLFISTSWL--LTYPRP-VFPNTILL 247
+ RS L K + L T L P + P +
Sbjct: 162 IFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGP---YI 218
Query: 248 GPIHLNNPKPLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRI 307
GP+ L WI + ++Y SLGT + ++++ I
Sbjct: 219 GPLLGEAA----NELPYWIPADRP-IVYVSLGTV----GNAVELLAIVLEALADLDVRVI 269
Query: 308 IWKWEEDI-LPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIP 366
+ L ++P NVI ++PQ ++L P+ I GG ++ EA++ GVP++ IP
Sbjct: 270 VSLGGARDTLVNVPDNVIVADYVPQLELL--PRADAVIHHGGAGTTSEALYAGVPLVVIP 327
Query: 367 FFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMM 426
ADQ N ++E + L +E +T E L + +L +++ R ++ ++ +
Sbjct: 328 DGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAERLAEEFKEE-D 386
Query: 427 SPKDTA 432
P A
Sbjct: 387 GPAKAA 392
>gnl|CDD|178032 PLN02410, PLN02410, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 451
Score = 64.3 bits (156), Expect = 5e-11
Identities = 52/161 (32%), Positives = 72/161 (44%), Gaps = 28/161 (17%)
Query: 239 PVFPNTILLGPIHL--NNPKPLPQNLKDWIE----GAKDGVIYFSLGTNMQSASLQEDKR 292
PV+P +GP+HL + P L + K IE K+ VI+ SLG S +L E
Sbjct: 230 PVYP----IGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLG----SLALMEINE 281
Query: 293 KAIVDSFKQFPRHRIIW----------KWEEDILPDLPSNVICR----KWLPQHDILAHP 338
S + +W +W E + + + R KW PQ ++L+HP
Sbjct: 282 VMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHP 341
Query: 339 KVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLE 379
V F G S+ E+I GVPMI PF +DQ N R LE
Sbjct: 342 AVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLE 382
>gnl|CDD|215084 PLN00164, PLN00164, glucosyltransferase; Provisional.
Length = 480
Score = 57.8 bits (140), Expect = 7e-09
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 326 RKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKL-ESMDVA 384
W PQ +ILAH V F+ G S E++ GVPM P +A+Q N +L M VA
Sbjct: 344 PTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVA 403
>gnl|CDD|215112 PLN02167, PLN02167, UDP-glycosyltransferase family protein.
Length = 475
Score = 56.0 bits (135), Expect = 2e-08
Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 48/246 (19%)
Query: 203 EIMERYFGTRGL---SGKQLEENKTLLFISTSWLLTYPRPVFPNTILLGPIHLNNPKPLP 259
EI ER+ +G+ S +LE N F + YP PV+P +GPI + P
Sbjct: 208 EIAERFPEAKGILVNSFTELEPNAFDYF--SRLPENYP-PVYP----VGPILSLKDRTSP 260
Query: 260 -------QNLKDWIEGAKDG-VIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKW 311
+ W++ + V++ G+ SL + K I + + R +W
Sbjct: 261 NLDSSDRDRIMRWLDDQPESSVVFLCFGS---LGSLPAPQIKEIAQAL-ELVGCRFLWSI 316
Query: 312 E---------EDILPD------LPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAI 356
+ LP+ + ++C W PQ +ILAH + F+ G S E++
Sbjct: 317 RTNPAEYASPYEPLPEGFMDRVMGRGLVC-GWAPQVEILAHKAIGGFVSHCGWNSVLESL 375
Query: 357 HFGVPMIGIPFFADQDTN----VRKLESMDVARFLEY-----ENITAETLVTLMKSILYN 407
FGVP+ P +A+Q N V++L + V L+Y E + A+ + ++S++
Sbjct: 376 WFGVPIATWPMYAEQQLNAFTMVKEL-GLAVELRLDYVSAYGEIVKADEIAGAVRSLMDG 434
Query: 408 ETVYRK 413
E V RK
Sbjct: 435 EDVPRK 440
>gnl|CDD|178572 PLN02992, PLN02992, coniferyl-alcohol glucosyltransferase.
Length = 481
Score = 53.1 bits (127), Expect = 2e-07
Identities = 54/222 (24%), Positives = 87/222 (39%), Gaps = 40/222 (18%)
Query: 239 PVFPNTILLGPIHLNNPKPLPQNLKDWI-EGAKDGVIYFSLGTNMQSASLQEDKRKAIVD 297
PV+P L PI + DW+ + + V+Y S G+ SL + +
Sbjct: 233 PVYPIGPLCRPI---QSSKTDHPVLDWLNKQPNESVLYISFGS---GGSLSAKQLTELAW 286
Query: 298 SFKQFPRHRIIWKWE-------------------EDILPD-LPSNVICR---------KW 328
+ + R +W D P+ LP + R W
Sbjct: 287 GLEM-SQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSW 345
Query: 329 LPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKL-ESMDVARFL 387
PQ +ILAH V F+ G S+ E++ GVPMI P FA+Q+ N L + + +A
Sbjct: 346 APQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRS 405
Query: 388 E--YENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMS 427
+ E I+ + L++ ++ E + KL +T MS
Sbjct: 406 DDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMS 447
>gnl|CDD|177830 PLN02173, PLN02173, UDP-glucosyl transferase family protein.
Length = 449
Score = 52.0 bits (124), Expect = 4e-07
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 264 DWIEGAKDG-VIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSN 322
DW++ G V+Y + G+ + +S Q ++ + + +F ++ EE LP
Sbjct: 256 DWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAISNFSYL---WVVRASEESKLPPGFLE 312
Query: 323 VICR------KWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVR 376
+ + KW PQ +L++ + F+ G S+ E + GVPM+ +P + DQ N +
Sbjct: 313 TVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAK 372
Query: 377 KLESM 381
++ +
Sbjct: 373 YIQDV 377
>gnl|CDD|215465 PLN02863, PLN02863, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 477
Score = 51.4 bits (123), Expect = 6e-07
Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 25/191 (13%)
Query: 240 VFPNTILLGPIHLNNPKPLP-QNLKDWIEGAKDG-VIYFSLGTNMQSASLQEDKRKAIVD 297
+ + G + P + ++ W++ +D V+Y G+ L +++ +A+
Sbjct: 250 LPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQ---VVLTKEQMEALAS 306
Query: 298 SFKQFPRHRIIWKWEEDILPD-----LPSN---------VICRKWLPQHDILAHPKVKLF 343
++ H IW +E + + +PS ++ R W PQ IL+H V F
Sbjct: 307 GLEKSGVH-FIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAF 365
Query: 344 IMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKL-ESMDVA-RFLEYENI---TAETLV 398
+ G S E + GVPM+ P ADQ N L + + VA R E + + E
Sbjct: 366 LTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELAR 425
Query: 399 TLMKSILYNET 409
M+S+ N+
Sbjct: 426 VFMESVSENQV 436
>gnl|CDD|177857 PLN02207, PLN02207, UDP-glycosyltransferase.
Length = 468
Score = 49.7 bits (118), Expect = 2e-06
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 27/162 (16%)
Query: 241 FPNTILLGPIHLNNPKPLPQN-------LKDWIEGAKDGVIYFSLGTNMQSASLQEDKRK 293
+P+ +GPI +P P+ L W++ + + F +M L+ K
Sbjct: 237 YPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSM--GRLRGPLVK 294
Query: 294 AIVDSFKQFPRHRIIW--KWEE----DILPD------LPSNVICRKWLPQHDILAHPKVK 341
I + ++R +W + EE D+LP+ +IC W PQ +ILAH V
Sbjct: 295 EIAHGL-ELCQYRFLWSLRTEEVTNDDLLPEGFLDRVSGRGMIC-GWSPQVEILAHKAVG 352
Query: 342 LFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTN----VRKLE 379
F+ G S E++ FGVP++ P +A+Q N V++L+
Sbjct: 353 GFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELK 394
>gnl|CDD|215293 PLN02534, PLN02534, UDP-glycosyltransferase.
Length = 491
Score = 49.1 bits (117), Expect = 4e-06
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 323 VICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTN 374
++ + W PQ IL+HP + F+ G S+ E I GVPMI P FA+Q N
Sbjct: 346 LLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLN 397
>gnl|CDD|178170 PLN02555, PLN02555, limonoid glucosyltransferase.
Length = 480
Score = 48.3 bits (115), Expect = 7e-06
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 327 KWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKL 378
+W PQ +LAHP V F+ G S+ EA+ GVP++ P + DQ T+ L
Sbjct: 343 QWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYL 394
>gnl|CDD|215127 PLN02210, PLN02210, UDP-glucosyl transferase.
Length = 456
Score = 47.7 bits (113), Expect = 8e-06
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 24/162 (14%)
Query: 238 RPVFPNTILLGPIHLNNPKPLPQNLK------------DWIEG-AKDGVIYFSLGTNMQS 284
+PV P L+ P L + + + K +W++ A+ V+Y S G+ ++S
Sbjct: 223 KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLES 282
Query: 285 ASLQEDKRKAIVDSFKQ--FPRHRIIWKWEE----DILPDL--PSNVICRKWLPQHDILA 336
E++ + I + K P +I E+ +L ++ + +W PQ IL+
Sbjct: 283 L---ENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEKILS 339
Query: 337 HPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKL 378
H + F+ G S+ E + GVP++ P + DQ + R L
Sbjct: 340 HMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLL 381
>gnl|CDD|215304 PLN02554, PLN02554, UDP-glycosyltransferase family protein.
Length = 481
Score = 47.9 bits (114), Expect = 9e-06
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 328 WLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTN 374
W PQ +LA P + F+ G S E++ FGVPM P +A+Q N
Sbjct: 349 WAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFN 395
>gnl|CDD|177813 PLN02152, PLN02152, indole-3-acetate beta-glucosyltransferase.
Length = 455
Score = 46.2 bits (109), Expect = 2e-05
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 328 WLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLE 379
W Q ++L H V F+ G SS E++ GVP++ P ++DQ N + LE
Sbjct: 334 WCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLE 385
>gnl|CDD|215247 PLN02448, PLN02448, UDP-glycosyltransferase family protein.
Length = 459
Score = 45.4 bits (108), Expect = 4e-05
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 328 WLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRK 377
W Q +L H V F G S+ EA+ GVPM+ P F DQ N +
Sbjct: 330 WCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKL 379
>gnl|CDD|178589 PLN03015, PLN03015, UDP-glucosyl transferase.
Length = 470
Score = 44.7 bits (105), Expect = 8e-05
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 323 VICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKL-ESM 381
++ +W PQ +IL+H + F+ G S E++ GVP++ P +A+Q N L E +
Sbjct: 337 LVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEI 396
Query: 382 DVA-RFLEYEN---ITAETLVTLMKSILYNE 408
VA R E + I E + +L++ I+ E
Sbjct: 397 GVAVRTSELPSEKVIGREEVASLVRKIVAEE 427
>gnl|CDD|178275 PLN02670, PLN02670, transferase, transferring glycosyl groups.
Length = 472
Score = 42.2 bits (99), Expect = 5e-04
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 25/165 (15%)
Query: 236 YPRPVFPNTILLGPIHLNNPKPLPQ-----NLKDWIEGAK-DGVIYFSLGTNMQSASLQE 289
Y +P+ P L I + +K+W++ + + V+Y +LGT ASL+
Sbjct: 237 YRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGT---EASLRR 293
Query: 290 DKRKAIVDSFKQFPRHRIIW---------KWEEDILPD------LPSNVICRKWLPQHDI 334
++ + ++ W + ++LPD +I W+PQ I
Sbjct: 294 EEVTELALGLEK-SETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKI 352
Query: 335 LAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLE 379
L+H V F+ G S E + FG +I P +Q N R L
Sbjct: 353 LSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLH 397
>gnl|CDD|178581 PLN03004, PLN03004, UDP-glycosyltransferase.
Length = 451
Score = 42.0 bits (98), Expect = 5e-04
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 323 VICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTN 374
++ + W PQ +L H V F+ G S EA+ GVPM+ P +A+Q N
Sbjct: 336 MVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFN 387
>gnl|CDD|178584 PLN03007, PLN03007, UDP-glucosyltransferase family protein.
Length = 482
Score = 39.1 bits (91), Expect = 0.005
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 19/125 (15%)
Query: 265 WIEGAK-DGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIW--------KWEEDI 315
W++ K D VIY S G+ AS + ++ I + IW +E+
Sbjct: 278 WLDSKKPDSVIYLSFGS---VASFKNEQLFEIAAGL-EGSGQNFIWVVRKNENQGEKEEW 333
Query: 316 LPD------LPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFA 369
LP+ +I R W PQ IL H F+ G S E + G+PM+ P A
Sbjct: 334 LPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGA 393
Query: 370 DQDTN 374
+Q N
Sbjct: 394 EQFYN 398
>gnl|CDD|215029 PLN00016, PLN00016, RNA-binding protein; Provisional.
Length = 378
Score = 37.8 bits (88), Expect = 0.011
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 26 TVESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMI-----GTDPLKEPPVNY 76
VE VLI+ T S H + KELV+ GH VT+ + +K+ P +
Sbjct: 49 AVEKKKVLIV-NTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSR 103
>gnl|CDD|223779 COG0707, MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine
transferase [Cell envelope biogenesis, outer membrane].
Length = 357
Score = 36.9 bits (86), Expect = 0.018
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 354 EAIHFGVPMIGIPF----FADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNET 409
E + GVP I +P+ Q+ N + LE A + +T E L L+ +L N
Sbjct: 267 ELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPE 326
>gnl|CDD|177807 PLN00414, PLN00414, glycosyltransferase family protein.
Length = 446
Score = 34.2 bits (78), Expect = 0.15
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 328 WLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKL-ESMDVARF 386
W+ Q IL+HP V F+ G S E++ ++ IP ADQ R L E ++V+
Sbjct: 319 WVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVK 378
Query: 387 LEYEN---ITAETLVTLMKSIL 405
++ E+ + E+L +KS++
Sbjct: 379 VQREDSGWFSKESLRDTVKSVM 400
>gnl|CDD|99968 cd03794, GT1_wbuB_like, This family is most closely related to
the GT1 family of glycosyltransferases. wbuB in E. coli
is involved in the biosynthesis of the O26 O-antigen.
It has been proposed to function as an
N-acetyl-L-fucosamine (L-FucNAc) transferase.
Length = 394
Score = 34.2 bits (79), Expect = 0.15
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 31 NVLIIC---PTPSYSHQVPFIAIGKELVRRGHTVTMIGTDP 68
+LI+ P + +ELV+RGH VT+I P
Sbjct: 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSP 41
>gnl|CDD|217329 pfam03033, Glyco_transf_28, Glycosyltransferase family 28
N-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). This N-terminal domain contains the acceptor
binding site and likely membrane association site. This
family also contains a large number of proteins that
probably have quite distinct activities.
Length = 136
Score = 32.7 bits (75), Expect = 0.17
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 43 HQVPFIAIGKELVRRGHTVTMIGTDP 68
H P +A+ L RRGH V + GT P
Sbjct: 11 HVFPAVALAWALRRRGHEVRL-GTPP 35
>gnl|CDD|178364 PLN02764, PLN02764, glycosyltransferase family protein.
Length = 453
Score = 33.9 bits (77), Expect = 0.19
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 323 VICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLE--- 379
V+ W+ Q IL+HP V F+ G S E++ ++ +P DQ N R L
Sbjct: 319 VVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDEL 378
Query: 380 --SMDVAR 385
S++VAR
Sbjct: 379 KVSVEVAR 386
>gnl|CDD|233284 TIGR01133, murG, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase. RM 8449890 RT The
final step of peptidoglycan subunit assembly in
Escherichia coli occurs in the cytoplasm. RA Bupp K, van
Heijenoort J. RL J Bacteriol 1993 Mar;175(6):1841-3
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 348
Score = 32.6 bits (75), Expect = 0.40
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 354 EAIHFGVPMIGIPF-FA--DQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408
E GVP I IP+ +A DQ N + LE + + + + E L+ + +L +
Sbjct: 265 ELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDP 322
>gnl|CDD|177858 PLN02208, PLN02208, glycosyltransferase family protein.
Length = 442
Score = 32.7 bits (74), Expect = 0.40
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 323 VICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKL-ESM 381
V+ W+ Q IL HP + F+ G + E++ M+ IPF +DQ R + E
Sbjct: 313 VVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEF 372
Query: 382 DVARFLEYEN---ITAETLVTLMKSIL 405
+V+ + E + E+L +KS++
Sbjct: 373 EVSVEVSREKTGWFSKESLSNAIKSVM 399
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function
prediction only].
Length = 496
Score = 32.9 bits (75), Expect = 0.45
Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 39/182 (21%)
Query: 159 TAYLGFLPKLGYTQSMT-----LMERMNN------LFMQLYSKFYIRS----------RL 197
AY + P++GY Q M L+ + + ++L + + R
Sbjct: 290 KAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRD 349
Query: 198 MKKQDEIMERYFGTRGLSGKQLEENKTLLFISTSWLLTYPRPVFPNTILLGPIHLNNPKP 257
+K D+++E L L E LL + W LT FP L
Sbjct: 350 LKVLDDLVEEL--DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYAL---------- 397
Query: 258 LPQNLKD--WIEG-AKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEED 314
+ D ++EG + + ++ ++ L+ D + + KQ H W
Sbjct: 398 ---RIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDELLDLLLKQLFLHSGKEAWSSI 454
Query: 315 IL 316
+
Sbjct: 455 LK 456
>gnl|CDD|227017 COG4671, COG4671, Predicted glycosyl transferase [General function
prediction only].
Length = 400
Score = 31.6 bits (72), Expect = 0.81
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 341 KLFIMQGGLQSSQEAIHFGVPMIGIPFFA---DQDTNVRKLESMDVARFLEYENITAETL 397
+L + GG + E + FG P + +P A +Q ++LE + + L EN+T + L
Sbjct: 296 RLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNL 355
Query: 398 VTLMKSIL 405
+K+ L
Sbjct: 356 ADALKAAL 363
>gnl|CDD|234474 TIGR04113, cas_csx17, CRISPR-associated protein Csx17, subtype
Dpsyc. Members of this protein family are found
exclusively in CRISPR-associated (cas) type I system
gene clusters of the Dpsyc subtype. Markers for that
type include a variant form of cas3 (model TIGR02621)
and the GSU0054-like protein family (model TIGR02165).
This family occurs in less than half of known Dpsyc
clusters.
Length = 704
Score = 32.0 bits (73), Expect = 0.83
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 255 PKPLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQF-----PRHRIIW 309
+PLP +W+ DG F + + AS+ + V + F P R W
Sbjct: 450 VRPLPLLSPEWVLADDDGSPEFRIALAL--ASIHDGP----VGPIRSFLAPVEPGRRGRW 503
Query: 310 KWEED 314
WEE+
Sbjct: 504 VWEEE 508
>gnl|CDD|233077 TIGR00661, MJ1255, conserved hypothetical protein. This model
represents nearly the full length of MJ1255 from
Methanococcus jannaschii and of an unpublished protein
from Vibrio cholerae, as well as the C-terminal half of
a protein from Methanobacterium thermoautotrophicum. A
small region (~50 amino acids) within the domain appears
related to a family of sugar transferases [Hypothetical
proteins, Conserved].
Length = 321
Score = 31.4 bits (71), Expect = 1.1
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 342 LFIMQGGLQSSQEAIHFGVPMIGIPFFA--DQDTNVRKLESMDVARFLEY 389
L I GG EA+ G P+I IP +Q N KLE + LEY
Sbjct: 250 LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEY 299
>gnl|CDD|215305 PLN02562, PLN02562, UDP-glycosyltransferase.
Length = 448
Score = 31.4 bits (71), Expect = 1.1
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 36/166 (21%)
Query: 234 LTYPRPVFPNTILLGPIH------LNNPKPLPQNLK--DWIEGAK-DGVIYFSLGT---- 280
+Y P + +GP+H + P +++ W++ K + VIY S G+
Sbjct: 227 ASYNNGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSP 286
Query: 281 ----NMQSASLQEDKRKAIVDSFKQFPRHRIIW----KWEEDILPDLPSNVICR----KW 328
N+++ +L A+ S + F IW W E + P V + W
Sbjct: 287 IGESNVRTLAL------ALEASGRPF-----IWVLNPVWREGLPPGYVERVSKQGKVVSW 335
Query: 329 LPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTN 374
PQ ++L H V ++ G S+ EAI ++ P DQ N
Sbjct: 336 APQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVN 381
>gnl|CDD|222200 pfam13528, Glyco_trans_1_3, Glycosyl transferase family 1.
Length = 317
Score = 31.1 bits (71), Expect = 1.3
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 341 KLFIMQGGLQSSQEAIHFGVPMIGIPFFA--DQDTNVRKLESMDVARFLEYENITAETL 397
I G + EA++ G P++ +P +Q +N LE + ++ E++ L
Sbjct: 251 SAVICNAGFELLSEALYLGKPLLLVPLDGQFEQTSNALYLERLGYGIVMDMEDLDPAVL 309
>gnl|CDD|99961 cd03785, GT1_MurG, MurG is an N-acetylglucosaminyltransferase, the
last enzyme involved in the intracellular phase of
peptidoglycan biosynthesis. It transfers
N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the
C4 hydroxyl of a lipid-linked N-acetylmuramoyl
pentapeptide (NAM). The resulting disaccharide is then
transported across the cell membrane, where it is
polymerized into NAG-NAM cell-wall repeat structure.
MurG belongs to the GT-B structural superfamily of
glycoslytransferases, which have characteristic N- and
C-terminal domains, each containing a typical Rossmann
fold. The two domains have high structural homology
despite minimal sequence homology. The large cleft that
separates the two domains includes the catalytic center
and permits a high degree of flexibility.
Length = 350
Score = 30.9 bits (71), Expect = 1.6
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 354 EAIHFGVPMIGIPF-FA---DQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNE 408
E G+P I IP +A Q N R L A + E +T E L + +L +
Sbjct: 267 ELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDP 325
Score = 28.2 bits (64), Expect = 9.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 43 HQVPFIAIGKELVRRGHTVTMIGT 66
H P +A+ +EL RG V +GT
Sbjct: 12 HIFPALALAEELRERGAEVLFLGT 35
>gnl|CDD|225462 COG2910, COG2910, Putative NADH-flavin reductase [General
function prediction only].
Length = 211
Score = 29.6 bits (67), Expect = 2.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 49 AIGKELVRRGHTVTMIGTDPLKEP 72
I KE ++RGH VT I + K
Sbjct: 15 RILKEALKRGHEVTAIVRNASKLA 38
>gnl|CDD|112137 pfam03308, ArgK, ArgK protein. The ArgK protein acts as an
ATPase enzyme and as a kinase, and phosphorylates
periplasmic binding proteins involved in the LAO
(lysine, arginine, ornithine)/AO transport systems.
Length = 267
Score = 29.6 bits (67), Expect = 3.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 49 AIGKELVRRGHTVTMIGTDP 68
A+G EL RRGH V ++ DP
Sbjct: 48 ALGMELRRRGHRVAVLAVDP 67
>gnl|CDD|217893 pfam04101, Glyco_tran_28_C, Glycosyltransferase family 28
C-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). Structural analysis suggests the C-terminal
domain contains the UDP-GlcNAc binding site.
Length = 167
Score = 28.8 bits (65), Expect = 4.0
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 354 EAIHFGVPMIGIP----FFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNET 409
E + G P I +P QD N +L A L + +T E LV + +L
Sbjct: 87 ELLALGKPAILVPRPKAAGEHQDNNALELVKAGAALVLLQKELTPEKLVEALLKLLLKPL 146
>gnl|CDD|187705 cd09767, Csx17_I-U, CRISPR/Cas system-associated protein Csx17.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins; Predicted subunit of the Cascade
complex;.
Length = 652
Score = 29.3 bits (66), Expect = 5.0
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 254 NPKPLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRII-WKWE 312
+PLP DWIE A D F + + AS+++ +K S P +R + WKW
Sbjct: 437 VTRPLPGLSPDWIEAADDLSPEFRIAAAL--ASIRDGGKKGDRTSLGPAPINRRLRWKWV 494
Query: 313 ED 314
E
Sbjct: 495 EP 496
>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like
dehydrogenases. D-Mandelate dehydrogenase (D-ManDH),
identified as an enzyme that interconverts
benzoylformate and D-mandelate, is a D-2-hydroxyacid
dehydrogenase family member that catalyzes the
conversion of c3-branched 2-ketoacids. D-ManDH exhibits
broad substrate specificities for 2-ketoacids with large
hydrophobic side chains, particularly those with
C3-branched side chains. 2-hydroxyacid dehydrogenases
catalyze the conversion of a wide variety of D-2-hydroxy
acids to their corresponding keto acids. The general
mechanism is (R)-lactate + acceptor to pyruvate +
reduced acceptor. Glycerate dehydrogenase catalyzes the
reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH
+ H+. Formate/glycerate and related dehydrogenases of
the D-specific 2-hydroxyacid dehydrogenase superfamily
include groups such as formate dehydrogenase, glycerate
dehydrogenase, L-alanine dehydrogenase, and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain.
Length = 321
Score = 28.7 bits (65), Expect = 6.1
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 246 LLGPIHLNNPKPLPQNLKDWIEGAKDG-VIYFSLGTNMQ-SASLQEDKRKAIVDSFKQFP 303
LLG +W E + VIY + GT + +L+E K V ++ F
Sbjct: 6 LLGDPI--------HAHDEWKELSSIAEVIYPTSGTREEFIEALKEGKYGDFVAIYRTFG 57
Query: 304 RHRIIWKWEEDILPDLPSNV--IC 325
++E+++ LP ++ I
Sbjct: 58 SAGETGPFDEELISPLPPSLKIIA 81
>gnl|CDD|129833 TIGR00750, lao, LAO/AO transport system ATPase. In E. coli,
mutation of this kinase blocks phosphorylation of two
transporter system periplasmic binding proteins and
consequently inhibits those transporters. This kinase
is also found in Gram-positive bacteria, archaea, and
the roundworm C. elegans. It may have a more general,
but still unknown function. Mutations have also been
found that do not phosphorylate the periplasmic binding
proteins, yet still allow transport. The ATPase
activity of this protein seems to be necessary, however
[Transport and binding proteins, Amino acids, peptides
and amines, Regulatory functions, Protein
interactions].
Length = 300
Score = 29.0 bits (65), Expect = 6.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 49 AIGKELVRRGHTVTMIGTDP 68
A+G EL RRG V +I DP
Sbjct: 53 ALGMELRRRGLRVAVIAVDP 72
>gnl|CDD|233649 TIGR01945, rnfC, electron transport complex, RnfABCDGE type, C
subunit. The six subunit complex RnfABCDGE in
Rhodobacter capsulatus encodes an apparent NADH
oxidoreductase responsible for electron transport to
nitrogenase, necessary for nitrogen fixation. A closely
related complex in E. coli, RsxABCDGE (Reducer of SoxR),
reduces the 2Fe-2S-containing superoxide sensor SoxR,
active as a transcription factor when oxidized. This
family of putative NADH oxidoreductase complexes exists
in many of the same species as the related NQR, a
Na(+)-translocating NADH-quinone reductase, but is
distinct. This model describes the C subunit [Energy
metabolism, Electron transport].
Length = 435
Score = 28.5 bits (64), Expect = 8.6
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 320 PSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIP 366
P N+ P DILA GG + E + G PM+G+
Sbjct: 296 PKNLWVLIGTPVSDILAF--------CGGFREKPERLIMGGPMMGLA 334
>gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the
GT1 family of glycosyltransferases and named after YqgM
in Bacillus licheniformis about which little is known.
Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in certain bacteria and archaea.
Length = 374
Score = 28.5 bits (64), Expect = 8.7
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 31 NVLIICPTPSYSH---QVPFIAIGKELVRRGHTVTMIGTDPLKEPPVNYTDIDLSFSYKY 87
+L++ P S + + + + L RGH VT++ P +
Sbjct: 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPP 60
Query: 88 FKPQLQKGEVLPDAVDNQRRLTGYEF 113
+ +L A+ +R L F
Sbjct: 61 LLRVRRLLLLLLLALRLRRLLRRERF 86
>gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase.
Length = 585
Score = 28.5 bits (64), Expect = 8.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 45 VPFIAIGKELVRRGHTVTMIGTDPLKEPPV 74
VP +AI ++ RR MIGTD +E P+
Sbjct: 103 VPLVAITGQVPRR-----MIGTDAFQETPI 127
>gnl|CDD|153133 cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes the
isomerization between 2-isopropylmalate and
3-isopropylmalate. Aconatase-like catalytic domain of
3-isopropylmalate dehydratase and related
uncharacterized proteins. 3-isopropylmalate dehydratase
catalyzes the isomerization between 2-isopropylmalate
and 3-isopropylmalate, via the formation of
2-isopropylmaleate 3-isopropylmalate. IPMI is involved
in fungal and bacterial leucine biosynthesis and is also
found in eukaryotes.
Length = 382
Score = 28.3 bits (64), Expect = 9.2
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 125 TEDQLKSQQMQQFFKYIDENHVKFDLIIYEGLLHTAYLGFLPKLGYTQ-SMTL 176
T D ++Q++ K+ E + F + +G+ H LP+ G T MT+
Sbjct: 40 TPDIKAAEQVKTLRKFAKEFGINFFDVGRQGICHVI----LPEKGLTLPGMTI 88
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.418
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,998,082
Number of extensions: 2472771
Number of successful extensions: 2381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2363
Number of HSP's successfully gapped: 71
Length of query: 477
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 376
Effective length of database: 6,457,848
Effective search space: 2428150848
Effective search space used: 2428150848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)