RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15582
(477 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 216 bits (552), Expect = 8e-69
Identities = 49/167 (29%), Positives = 98/167 (58%), Gaps = 4/167 (2%)
Query: 255 PKPLPQNLKDWIEGA-KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEE 313
KPLP+ ++D+++ + ++GV+ FSLG+ + + + E++ I + Q P +++W+++
Sbjct: 4 AKPLPKEMEDFVQSSGENGVVVFSLGSMVSN--MTEERANVIASALAQIP-QKVLWRFDG 60
Query: 314 DILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDT 373
+ L N KW+PQ+D+L HPK + FI GG EAI+ G+PM+GIP FADQ
Sbjct: 61 NKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPD 120
Query: 374 NVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKL 420
N+ +++ A +++ +++ L+ +K ++ + + S++
Sbjct: 121 NIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDPSYKENVMKLSRI 167
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 201 bits (513), Expect = 7e-60
Identities = 78/440 (17%), Positives = 135/440 (30%), Gaps = 62/440 (14%)
Query: 26 TVESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE-------PPVNYTD 78
A++ + ++ H P + + +ELV RGH VT + PV Y
Sbjct: 4 QTTPAHIAMFSI-AAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVLYHS 62
Query: 79 IDLSFSYKYFKPQLQKGEVLPDAVDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFF 138
D G + N+ + L Q+ +
Sbjct: 63 T-------------------LPGPDADPEAWGSTLLDNV-EPFLNDAIQALP--QLADAY 100
Query: 139 KYIDENHVKFDLIIYE-----GLLHTAYLGFLPKL----GYTQSMTLMERMNNLFMQLYS 189
DL++++ + G +P + E + +
Sbjct: 101 A-----DDIPDLVLHDITSYPARVLARRWG-VPAVSLSPNLVAWKGYEEEVAEPMWREPR 154
Query: 190 KFYIRSRLMKKQDEIMERYFGTRGLSGKQLEENKTLLFISTSWLLTYPRPVFPNTILLGP 249
+ + + ++ T ++L+ I + R +G
Sbjct: 155 QTERGRAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHADRVDEDVYTFVGA 214
Query: 250 IHLNNPKPLPQNLKDWIEGAKD-GVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRII 308
W A V+ SLG+ Q + V +F P ++
Sbjct: 215 CQ-----GDRAEEGGWQRPAGAEKVVLVSLGSAFTK---QPAFYRECVRAFGNLPGWHLV 266
Query: 309 W----KWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIG 364
K L +LP NV W+PQ IL + F+ G SQE + PMI
Sbjct: 267 LQIGRKVTPAELGELPDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIA 324
Query: 365 IPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQ 424
+P DQ N L+ + VAR L E TA+ L +++ + V R+ + +
Sbjct: 325 VPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQE 384
Query: 425 MMSPKDTAVWWIEYVLKAEG 444
+ + A IE L A
Sbjct: 385 GGTRR--AADLIEAELPARH 402
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 189 bits (482), Expect = 2e-55
Identities = 74/458 (16%), Positives = 145/458 (31%), Gaps = 81/458 (17%)
Query: 26 TVESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE-------PPVNYTD 78
+V ++ P + H P + I +ELV RGH V+ TD PV Y
Sbjct: 9 SVTPRHISFFNI-PGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAGATPVVY-- 65
Query: 79 IDLSFSYKYFKPQLQKGEVLPDAVDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFF 138
+LP + + E + + + L Q++ +
Sbjct: 66 ----------------DSILPKESNPEESWP--EDQESAMGLFLDEAVRVLP--QLEDAY 105
Query: 139 KYIDENHVKFDLIIYEGLLHTAYL-----------------------GFLPKLGYTQSMT 175
+ DLI+Y+ A + +P + +
Sbjct: 106 A-----DDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDPTADR 160
Query: 176 LMERMNNLFMQLYSKFYIRSRLMKKQDEIMERYFGTRGLSGKQLEENKT--LLFISTSWL 233
E + + + + + G+ E ++
Sbjct: 161 GEEAAAPAGTGDAEEGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRT 220
Query: 234 LTYPRPVFP-NTILLGPIHLNNPKPLPQNLKDWI-EGAKDGVIYFSLGTNMQSASLQEDK 291
N +GP + + W G V+ +LG+ + + D
Sbjct: 221 FQIKGDTVGDNYTFVGPTY-GDRSHQG----TWEGPGDGRPVLLIALGS---AFTDHLDF 272
Query: 292 RKAIVDSFKQFPRHRIIWKW----EEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQG 347
+ + + ++ + L ++P NV +W+PQ DIL K FI
Sbjct: 273 YRTCLSAVDGLD-WHVVLSVGRFVDPADLGEVPPNVEVHQWVPQLDIL--TKASAFITHA 329
Query: 348 GLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYN 407
G+ S+ EA+ VPM+ +P A+Q N ++ + + R + + +TAE L + ++ +
Sbjct: 330 GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASD 389
Query: 408 ETVYRKSQVYSKLSNT-QMMSPKDTAVWWIEYVLKAEG 444
V + + + A +E +L G
Sbjct: 390 PGVAERLA---AVRQEIREAGGARAAADILEGILAEAG 424
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 162 bits (411), Expect = 2e-45
Identities = 65/429 (15%), Positives = 136/429 (31%), Gaps = 54/429 (12%)
Query: 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEPPVNYTDIDLSFSYKYFK 89
++L + H P + + EL RRGH +T + T V +
Sbjct: 5 RHILFANV-QGHGHVYPSLGLVSELARRGHRITYVTTPLF-ADEVKAAGAE-------VV 55
Query: 90 PQLQKGEVLPDAVDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFD 149
+ D + + + + + L+ ++ D
Sbjct: 56 L----YKSEFDTFHVPEVVKQEDAETQLHLVYVRENVAILR--AAEEALG-----DNPPD 104
Query: 150 LIIYE------GLLHTAYLG-----FLPKLGYTQSMTLMERMNNLFMQLYSKFYIRSRLM 198
L++Y+ G L A + +L + + Q + +
Sbjct: 105 LVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKELWKSNGQRHPAD--VEAVH 162
Query: 199 KKQDEIMERYFGTRGLSGKQLEENKTLLFISTSWLLTYPRPVFPNTI-LLGPIHLNNPKP 257
+++ +Y G + +E + L + F +GP L
Sbjct: 163 SVLVDLLGKY-GVDTPVKEYWDEIEGLTIVFLPKSFQPFAETFDERFAFVGPT-LTGRDG 220
Query: 258 LPQNLKDWI-EGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIW----KWE 312
P W V+ SLG + + +A +F P ++ +
Sbjct: 221 QP----GWQPPRPDAPVLLVSLGN---QFNEHPEFFRACAQAFADTP-WHVVMAIGGFLD 272
Query: 313 EDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFA-DQ 371
+L LP NV +W+P H +LAH + + G + EA GVP++ +P FA +
Sbjct: 273 PAVLGPLPPNVEAHQWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEA 330
Query: 372 DTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDT 431
+ ++ + + L + + ++ ++ + + V + + + P
Sbjct: 331 APSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQR-DILSSGGPAR- 388
Query: 432 AVWWIEYVL 440
A +E L
Sbjct: 389 AADEVEAYL 397
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 159 bits (403), Expect = 4e-44
Identities = 72/426 (16%), Positives = 147/426 (34%), Gaps = 49/426 (11%)
Query: 30 ANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEPPVNYTDIDLSF-SYKYF 88
A++LI+ S+ +P + + ELVRRGH V+ + EP + Y
Sbjct: 21 AHLLIVNV-ASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEP---VRAAGATVVPY--- 73
Query: 89 KPQLQKGEVLPDAVDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKF 148
+ DA D + V + + L + +
Sbjct: 74 ------QSEIIDA-DAAEVFGSDDLGVRPHLMYLRENVSVL--RATAEALD-----GDVP 119
Query: 149 DLIIYEGLLHTA------YLGFLPKLGYTQSMTLMERMNNLFMQLYSKFYIRSRLMKKQD 202
DL++Y+ A P + + + E + + I +
Sbjct: 120 DLVLYDDFPFIAGQLLAARWR-RPAVRLSAAFASNEHYSFSQDMVTLAGTIDPLDLPVFR 178
Query: 203 EIMERYFGTRGL--SGKQLEENKTLLFIS-TSWLLTYPRPVFP-NTILLGPIHLNNPKPL 258
+ + GL S + L + F + +GP ++ + L
Sbjct: 179 DTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTFDDRFVFVGPC-FDDRRFL 237
Query: 259 PQNLKDWIEGAKDG-VIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRII---WKWEED 314
+W A D V+ SLGT + + + + +F P H ++ + +
Sbjct: 238 G----EWTRPADDLPVVLVSLGT---TFNDRPGFFRDCARAFDGQPWHVVMTLGGQVDPA 290
Query: 315 ILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTN 374
L DLP NV +W+P +L + + + GG+ + EA+++G P++ +P D
Sbjct: 291 ALGDLPPNVEAHRWVPHVKVL--EQATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPM 348
Query: 375 VRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAVW 434
R+++ + + L E +TL+ + ++ + + + + + A
Sbjct: 349 ARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRG-HVRRAGGA-ARAAD 406
Query: 435 WIEYVL 440
+E L
Sbjct: 407 AVEAYL 412
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 147 bits (372), Expect = 1e-39
Identities = 65/399 (16%), Positives = 123/399 (30%), Gaps = 57/399 (14%)
Query: 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE-------PPVNYTDIDLSFS 84
VL ++ H P + + GH VT + PV
Sbjct: 23 VLFASL-GTHGHTYPLLPLATAARAAGHEVTFATGEGFAGTLRKLGFEPVATGMPVFDGF 81
Query: 85 YKYFKPQLQKGEVLPDAVDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDEN 144
+ + + L F I + + ++
Sbjct: 82 LAALRIRFDTDSPEGLTPEQLSELPQIVFGRVIPQRVFDELQPVIER------------- 128
Query: 145 HVKFDLIIYE-----GLLHTAYLGFLPKLGYTQSMTLMERMNNLFMQLYSKFYIRSRLMK 199
++ DL++ E L G +P + + + + +
Sbjct: 129 -LRPDLVVQEISNYGAGLAALKAG-IPTICHGVGRDTPDDLTRSIEEEV----------- 175
Query: 200 KQDEIMERYFGTRGLSGKQLEENKTLLFISTSWLLTYPRPVFPNTILLGPIHLNNPKPLP 259
+ +R G G+ + I L P L P+ LP
Sbjct: 176 --RGLAQRL-GLDLPPGRIDGFGNPFIDIFPPSLQEPEFRARPRRHELRPVPFAEQGDLP 232
Query: 260 QNLKDWIEGAKDG--VIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRII---WKWEED 314
W+ ++Y +LGT S+ + +A +D ++ +
Sbjct: 233 ----AWLSSRDTARPLVYLTLGT---SSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVS 285
Query: 315 ILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTN 374
L ++P+NV W+PQ +L P V L + GG ++ A+ GVP + P+ D N
Sbjct: 286 GLGEVPANVRLESWVPQAALL--PHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFAN 343
Query: 375 VRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRK 413
+ + L +NI+ +++ K +L E+ YR
Sbjct: 344 AQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEES-YRA 381
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 132 bits (334), Expect = 2e-34
Identities = 58/394 (14%), Positives = 112/394 (28%), Gaps = 50/394 (12%)
Query: 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEPPVNYTDIDLSFSYKYFKP 90
VLI S P +A+ L G M P + P
Sbjct: 2 GVLITG-CGSRGDTEPLVALAARLRELGADARMC-LPPDYVERCAEVGVP-------MVP 52
Query: 91 QLQKGEVLPDAVDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDENHVKFDL 150
G + L ++ ++ + ++F + D
Sbjct: 53 V---GRAVRAGAREPGELP--------------PGAAEVVTEVVAEWFDKVPAAIEGCDA 95
Query: 151 IIYEGLLHTAYLGFL--PKLG------YTQSMTLMERMNNLFMQLYSKFYIRSRLMKKQD 202
++ GLL A KLG L + +Y+ RL
Sbjct: 96 VVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAERDMYN--QGADRLFGDAV 153
Query: 203 EIMERYFG---TRGLSGKQLEENKTLLFISTSWLLTYPRPVFPNTILLGPIHLNNPKPLP 259
G L + +++ +L+ RP T+ G L + +PL
Sbjct: 154 NSHRASIGLPPVEHLYDYGYTD---QPWLAADPVLSPLRPTDLGTVQTGAWILPDQRPLS 210
Query: 260 QNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFP-RHRIIWKWEEDILPD 318
L+ ++ +Y G S + + +++ + R + W D
Sbjct: 211 AELEGFLRAGSP-PVYVGFG----SGPAPAEAARVAIEAVRAQGRRVVLSSGWAGLGRID 265
Query: 319 LPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKL 378
+ + + + +V + GG ++ G P + +P ADQ ++
Sbjct: 266 EGDDCLVVGEVNHQVLF--GRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRV 323
Query: 379 ESMDVARFLEYENITAETLVTLMKSILYNETVYR 412
+ V + T E+L + + L R
Sbjct: 324 ADLGVGVAHDGPTPTVESLSAALATALTPGIRAR 357
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 132 bits (334), Expect = 3e-34
Identities = 63/405 (15%), Positives = 134/405 (33%), Gaps = 40/405 (9%)
Query: 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE-------PPVNY-TDIDLS 82
V+ S SH + + GH V ++ + L E V TD+DL
Sbjct: 22 RVVFSSM-ASKSHLFGLVPLAWAFRAAGHEVRVVASPALTEDITAAGLTAVPVGTDVDLV 80
Query: 83 FSYKYFKPQLQKGEVLPDAVDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQM-QQFFKYI 141
+ + D + +E ++ + + + + + +
Sbjct: 81 DFMTHAGHDIIDYVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFC 140
Query: 142 DENHVKFDLIIYE-----GLLHTAYLGFLP--KLGYTQSMTLMERMNNLFMQLYSKFYIR 194
+ + DL+I+E + A G P +L + +T R N L + R
Sbjct: 141 RK--WRPDLVIWEPLTFAAPIAAAVTG-TPHARLLWGPDITTRARQNFLGLLPDQPEEHR 197
Query: 195 SRLMKKQDEIMERYFGTRGLSGKQLEENKTLLFISTSWLLTYPRPVFP-NTILLGPIHL- 252
+ E + G E ++ + +G ++
Sbjct: 198 EDPL---AEWLTWTLEKYGGPAFDEE----VVVGQWTIDPAPAAIRLDTGLKTVGMRYVD 250
Query: 253 -NNPKPLPQNLKDWI-EGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWK 310
N P +P +W+ + + + +LG + + S+ + + ++ + I
Sbjct: 251 YNGPSVVP----EWLHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATF 306
Query: 311 WEEDI--LPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFF 368
+ + + ++P NV ++P H +L P + GG S A GVP + +P
Sbjct: 307 DAQQLEGVANIPDNVRTVGFVPMHALL--PTCAATVHHGGPGSWHTAAIHGVPQVILPDG 364
Query: 369 ADQDTNVRKLESMDVARFLEYENITAETLVTLMKSILYNETVYRK 413
D ++ + L +T + L +K +L + +R
Sbjct: 365 WDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPA-HRA 408
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 117 bits (296), Expect = 2e-29
Identities = 55/399 (13%), Positives = 117/399 (29%), Gaps = 58/399 (14%)
Query: 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE-------PPVNYTDIDLSFS 84
VL++ P +H + + + L GH V + L+ D +
Sbjct: 4 VLVVPL-PYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGD 62
Query: 85 YKYFKPQLQKGEVLPDAVDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDEN 144
R + N+ + ++ + L+ +
Sbjct: 63 TGGTTQLRFPNPAFGQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAE----------- 111
Query: 145 HVKFDLIIYE-----GLLHTAYLGFLPKLGYTQSMTLMERMNNLFMQLYSKFYIRSRLMK 199
+ +++ + G + L LP + + + R
Sbjct: 112 AWRPSVLLVDVCALIGRVLGGLLD-LPVVLHRWGVDPTAGP------------FSDRA-- 156
Query: 200 KQDEIMERYFGTRGLSGKQLEENKTLLFISTSWLLTYPRPVFPNTILLGPIHLNNPKPLP 259
E+++ GL+G L + +L L + + N P
Sbjct: 157 --HELLDPVCRHHGLTG--LPTPELILDPCPPSLQ-ASDAPQGAPVQ--YVPYNGSGAFP 209
Query: 260 QNLKDWI-EGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIW--KWEEDIL 316
W + +G + +A+ +A+ + + +I +L
Sbjct: 210 ----AWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEHRALL 265
Query: 317 PDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVR 376
DLP N + +P + L +L I GG ++ A G+P + +P + DQ R
Sbjct: 266 TDLPDNARIAESVPLNLFL--RTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYAR 323
Query: 377 KLESMDVARFLEYENITA--ETLVTLMKSILYNETVYRK 413
L + L E + E + ++L + +
Sbjct: 324 NLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTG-FAA 361
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 111 bits (280), Expect = 3e-27
Identities = 53/398 (13%), Positives = 100/398 (25%), Gaps = 64/398 (16%)
Query: 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE-------PPVNYTDIDLSFS 84
+L + S + + GH V M + P V TD+
Sbjct: 3 ILFVAA-GSPATVFALAPLATAARNAGHQVVMAANQDMGPVVTGVGLPAVATTDL----- 56
Query: 85 YKYFKPQLQKGEVLPDAVDNQRRLTGYEFIVNIGRITIAYTEDQLKSQQMQQFFKYIDEN 144
P + GR L +M F +
Sbjct: 57 -----PIRHFITTDREGRPEAIPSDPVAQARFTGRWFARMAASSL--PRMLDFSR----- 104
Query: 145 HVKFDLIIYE----GLLHTAYLGFLPKLGYTQSMTLMERMNNLFMQLYSKFYIRSRLMKK 200
+ DLI+ A +P T + ++ +R L
Sbjct: 105 AWRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVDADGIHPGADAE-----LRPEL--- 156
Query: 201 QDEIMERYFGTRGLSGKQLEENKTLLFISTSWLLTYPRPVFPNTILLGPIHLNNPKPLPQ 260
G L L + S P + + + PL
Sbjct: 157 ------SELGLERLPAPDL----FIDICPPSLRPANAAPARM----MRHVATSRQCPLE- 201
Query: 261 NLKDWIEGAKDG-VIYFSLGTNMQSASLQEDKR--KAIVDSFKQFPRHRIIWKWEEDI-- 315
W+ + + G+ + S + + + ++ I+ +
Sbjct: 202 ---PWMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIVAAPDTVAEA 258
Query: 316 LPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNV 375
L W P + P L + G S+ + GVP + IP + +
Sbjct: 259 LRAEVPQARVG-WTPLDVVA--PTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPA 315
Query: 376 RKLESMDVARFLEYENITAETLVTLMKSILYNETVYRK 413
R++ A L + E + + + +T Y +
Sbjct: 316 RRVADYGAAIALLPGEDSTEAIADSCQELQAKDT-YAR 352
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 110 bits (276), Expect = 1e-26
Identities = 38/188 (20%), Positives = 75/188 (39%), Gaps = 8/188 (4%)
Query: 226 LFISTSWLLTYPRPVFPNTILLGPIHLNNPKPLPQNLKDWIEGAKDGVIYFSLGTNMQSA 285
+++ +L +P + + G L + +PL L +++ A +Y G S
Sbjct: 194 PWVAADPVLAPLQPTDLDAVQTGAWILPDERPLSPELAAFLD-AGPPPVYLGFG----SL 248
Query: 286 SLQEDKRKAIVDSFKQFPRHRIIWK-WEEDILPDLPSNVICRKWLPQHDILAHPKVKLFI 344
D + +D+ + R I+ + W + +LPD ++ + + +V I
Sbjct: 249 GAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLF--GRVAAVI 306
Query: 345 MQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSI 404
GG ++ A G P I +P ADQ ++ + V + T ++L + +
Sbjct: 307 HHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA 366
Query: 405 LYNETVYR 412
L ET R
Sbjct: 367 LTPETHAR 374
Score = 47.2 bits (112), Expect = 6e-06
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE 71
VL+ S P +A+ + G V M E
Sbjct: 2 RVLLAT-CGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAE 41
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 96.4 bits (240), Expect = 7e-22
Identities = 38/188 (20%), Positives = 73/188 (38%), Gaps = 7/188 (3%)
Query: 226 LFISTSWLLTYPRPVFPNTILLGPIHLNNPKPLPQNLKDWIEGAKDGVIYFSLGTNMQSA 285
++ +L P + + G L++ +PLP L+ ++ A ++ G+
Sbjct: 194 PLLAADPVL-APLQPDVDAVQTGAWLLSDERPLPPELEAFLA-AGSPPVHIGFGS-SSGR 250
Query: 286 SLQEDKRKAIVDSFKQFPRHRII-WKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFI 344
D K V++ + R I+ W E +LPD + + + +V I
Sbjct: 251 G-IADAAKVAVEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVNFQALF--RRVAAVI 307
Query: 345 MQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVTLMKSI 404
G + A GVP + IP DQ ++ ++ + + T E+L + ++
Sbjct: 308 HHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV 367
Query: 405 LYNETVYR 412
L ET R
Sbjct: 368 LAPETRAR 375
Score = 46.4 bits (110), Expect = 1e-05
Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 31 NVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE 71
VL+ + +A+ L G M +E
Sbjct: 2 RVLLSV-CGTRGDVEIGVALADRLKALGVQTRMCAPPAAEE 41
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 87.9 bits (218), Expect = 5e-19
Identities = 26/158 (16%), Positives = 56/158 (35%), Gaps = 11/158 (6%)
Query: 264 DWI-EGAKDGVIYFSLGT--NMQSASLQEDKR---KAIVDSFKQFPRHRIIW--KWEEDI 315
W+ E K + + GT + + + +A+ + ++
Sbjct: 219 SWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQT 278
Query: 316 LPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNV 375
L LP V+ P I+ P + + GG ++ + GVP + +P A+ +
Sbjct: 279 LQPLPEGVLAAGQFPLSAIM--PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSA 336
Query: 376 RKLESMDVARFLEYENITAETLVTLMKSILYNETVYRK 413
R L + + +E E+++ I + + Y
Sbjct: 337 RLLHAAGAGVEVPWEQAGVESVLAACARIRDDSS-YVG 373
Score = 49.0 bits (117), Expect = 2e-06
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKE 71
+L+I S +P + + L GH V + ++ +
Sbjct: 18 ILVIAG-CSEGFVMPLVPLSWALRAAGHEVLVAASENMGP 56
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 85.3 bits (211), Expect = 3e-18
Identities = 32/184 (17%), Positives = 60/184 (32%), Gaps = 18/184 (9%)
Query: 224 TLLFISTSWLL-TYPRPVFPNTILLGPIHLNNPKPLPQNLKDWIEGAKDG-VIYFSLGTN 281
T+ S LL P F + L D + + ++GT
Sbjct: 192 TIESFPPSLLLEAEPEGWFM-----RWVPYGGGAVLG----DRLPPVPARPEVAITMGT- 241
Query: 282 MQSASLQEDKRKAIVDSFKQFPRHRIIW--KWEEDILPDLPSNVICRKWLPQHDILAHPK 339
++ + + I+ + + ++ + L LP NV W P H +L
Sbjct: 242 IELQAFGIGAVEPIIAAAGEVDADFVLALGDLDISPLGTLPRNVRAVGWTPLHTLL--RT 299
Query: 340 VKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMD--VARFLEYENITAETL 397
+ GG + AI G+P + P DQ + + + + + A+ L
Sbjct: 300 CTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLL 359
Query: 398 VTLM 401
L+
Sbjct: 360 RRLI 363
Score = 47.9 bits (114), Expect = 4e-06
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTD 67
VL + P H P I + GH V + +
Sbjct: 23 VLFVSS-PGIGHLFPLIQLAWGFRTAGHDVLIAVAE 57
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 70.3 bits (173), Expect = 3e-13
Identities = 44/156 (28%), Positives = 64/156 (41%), Gaps = 20/156 (12%)
Query: 238 RPVFPNTILLGPIHLNNPKPLPQNLKD---WIEGAKDG-VIYFSLG--TNMQSASLQEDK 291
+ + +GP +L P P+ N W++ K V+Y S G T A +
Sbjct: 234 KSKLKTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALS 293
Query: 292 RKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICR--------KWLPQHDILAHPKVKLF 343
A+ S F IW + LP + + W PQ ++LAH V F
Sbjct: 294 E-ALEASRVPF-----IWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAF 347
Query: 344 IMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLE 379
+ G S E++ GVP+I PFF DQ N R +E
Sbjct: 348 VTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVE 383
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 64.9 bits (159), Expect = 2e-11
Identities = 42/165 (25%), Positives = 60/165 (36%), Gaps = 29/165 (17%)
Query: 238 RPVFPNTILLGPIHLNNPKPLPQNLKD---WIEGAKDG-VIYFSLG--TNMQSASLQEDK 291
F + +GP +L P+ + W++ ++ V+Y S G L
Sbjct: 236 NSKFKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALA 295
Query: 292 RKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVICR--------KWLPQHDILAHPKVKLF 343
++ + F IW + D LP + R W PQ +IL H V +F
Sbjct: 296 E-SLEECGFPF-----IWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVF 349
Query: 344 IMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARFLE 388
+ G S E I GVPMI PFF DQ N E
Sbjct: 350 LTHSGWNSVLECIVGGVPMISRPFFGDQGLN---------TILTE 385
Score = 28.7 bits (65), Expect = 5.2
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 32 VLIICPTPSYSHQVPFIAIGKELVRRGHTVT 62
V ++ P +H P +++ K++ VT
Sbjct: 16 VAVL-AFPFGTHAAPLLSLVKKIATEAPKVT 45
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 59.2 bits (144), Expect = 1e-09
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 324 ICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVR 376
+ W PQ +LAHP F+ G S+ E++ G+P+I P +A+Q N
Sbjct: 342 VIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAV 394
Score = 31.0 bits (71), Expect = 0.78
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 32 VLIICPTPSYSHQVPFIAIGKELV-RRGHTVTMIGTDP 68
+I P+P H +P + K LV G TVT +
Sbjct: 10 AII--PSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGE 45
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 59.2 bits (144), Expect = 1e-09
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 34/165 (20%)
Query: 234 LTYPRPVFPNTILLGPIHLNNPKPLPQNLKD-------WIEGAKDG-VIY--F-SLGTNM 282
L P +GP+ +P P+ + W++ D V++ F S+G +
Sbjct: 231 LYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSF 290
Query: 283 QSASLQEDKRKAI----VDSFKQFPRHRIIW--KWEEDILPD--LPSNVIC-----RKWL 329
+ ++E I S +F +W E+ + P+ L + W
Sbjct: 291 GPSQIRE-----IALGLKHSGVRF-----LWSNSAEKKVFPEGFLEWMELEGKGMICGWA 340
Query: 330 PQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTN 374
PQ ++LAH + F+ G S E++ FGVP++ P +A+Q N
Sbjct: 341 PQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLN 385
Score = 29.9 bits (68), Expect = 2.2
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 21 MAFLLTVESANVLIICPTPSYSHQVPFIAIGKELVRRGH--TVTMIGTDP 68
M+ +++ ++ I P P H + K L +T+
Sbjct: 1 MSMSDINKNSELIFI-PAPGIGHLASALEFAKLLTNHDKNLYITVFCIKF 49
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 58.5 bits (142), Expect = 2e-09
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 327 KWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDTNVR 376
W PQ +L HP + F+ G S+ E+I GVPM+ PFFADQ T+ R
Sbjct: 359 SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCR 408
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 3e-08
Identities = 69/448 (15%), Positives = 145/448 (32%), Gaps = 107/448 (23%)
Query: 78 DIDLSFSYKYFKPQLQKGEV-----LPDAVDNQRRLTGYEFIVNIGRITIAYTEDQLKSQ 132
+ D K L K E+ DAV RL F + + +
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----FWT---------LLSK-QEE 77
Query: 133 QMQQFFKYIDENHVKFDLIIYEGLLHTAYLGFLPKLGYTQSMTLMERMNNLFMQLYSKFY 192
+Q+F + + + KF + + T P + + +R+ N Q+++K+
Sbjct: 78 MVQKFVEEVLRINYKF---LMSPI-KTEQRQ--PSMMTRMYIEQRDRLYND-NQVFAKYN 130
Query: 193 I-RSRLMKK-QDEIME----RYFGTRGLSGKQLEENKTLLFISTSWLLTYP-RPVFPNTI 245
+ R + K + ++E + G+ G KT + + L+Y + I
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGS----GKTWVALDV--CLSYKVQCKMDFKI 184
Query: 246 L---LGPIHLNNPKPLPQNLKDWIEGAKDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQF 302
L + N+P+ + + L+ + + + N S S K + S +
Sbjct: 185 FWLNLK--NCNSPETVLEMLQK---------LLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 303 PRHRIIWK------------WEEDILPDLPSNVICR-----KWLPQHDILAHPKVKLFIM 345
R + K N+ C+ ++ D L+ +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 346 ---QGGLQSSQE----AIHFGVPMIGIPFFADQDTNVRKLESM-------DVARFLEYEN 391
L + + +P TN R+L S+ +A + +++
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-TNPRRL-SIIAESIRDGLATWDNWKH 349
Query: 392 ITAETLVTLMKSILYNETVYRKSQVYSKLSNTQMMSPKDTAV--------WW--IEYVLK 441
+ + L T+++S L +++ +LS + P + W+ I+
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLS----VFPPSAHIPTILLSLIWFDVIKSD-- 403
Query: 442 AEGNVDHL-KYNL--DQIPWYQYYLVDL 466
V+ L KY+L Q + +
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSI 431
Score = 41.4 bits (96), Expect = 6e-04
Identities = 63/427 (14%), Positives = 124/427 (29%), Gaps = 126/427 (29%)
Query: 19 ILMAF------LLTVESANVLIICPTPSYSHQVPFIAIGKELVRRGHTVTMIGTDPLKEP 72
AF LLT V + +H + H + D +K
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTH-----------ISLDHHSMTLTPDEVKSL 306
Query: 73 PVNYTDI---DLSFSYKYFKPQLQK--GEVLPDAVDNQRRLTGYEFIVNIGRI--TIAYT 125
+ Y D DL P+ E + D + ++ VN ++ I +
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA---TWDNWKH-VNCDKLTTIIESS 362
Query: 126 EDQLKSQQMQQFFKY--IDENHVKFDLIIYEGLLHTAYLGFLPKLGYTQSMTLMERMNNL 183
+ L+ + ++ F + I LL + + M ++ +++
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAH----IPTILLSL----IWFDVIKSDVMVVVNKLHK- 413
Query: 184 FMQLYSKFYIRSRLMKKQDE----IMERYFGTRGLSGKQLEENKTLLFISTSWLLTYPRP 239
S + K+ E I Y + +LE L
Sbjct: 414 ----------YSLVEKQPKESTISIPSIYLELK----VKLENEYAL-------------- 445
Query: 240 VFPNTILLGPIHLNNPKPLPQN--LKDWIEGAKDGVIYFSLGTNMQSASLQEDK---RKA 294
+ ++ H N PK + + ++ D Y +G ++++ E R
Sbjct: 446 ---HRSIVD--HYNIPKTFDSDDLIPPYL----DQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 295 IVDSFKQFPRHRII-----WKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGL 349
+D F+ F +I W IL L + ++ +D V
Sbjct: 497 FLD-FR-FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI------ 548
Query: 350 QSSQEAIHFGVPMIGIPFFADQDTNVRKLESMDVARF-LEYENITAETLVTLMKSILYNE 408
+ F +P I N+ + D+ R L E+ ++ E
Sbjct: 549 ------LDF-LPKIE--------ENLICSKYTDLLRIALMAED-----------EAIFEE 582
Query: 409 TVYRKSQ 415
+++ Q
Sbjct: 583 A-HKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 2e-04
Identities = 81/462 (17%), Positives = 143/462 (30%), Gaps = 158/462 (34%)
Query: 23 FLLTVESANVLIICPTPSYSH--QV--PFIAI----------------GKELVRR--GHT 60
L+ S +++ PT S+ Q+ F I ELV + G+
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 61 VTMIGTDPLKEPPVNYTDIDLSFSYKYFKPQ-LQKGEV------LPDAVDNQRRLTGYEF 113
+++ +P K + + L+ F+ L+ ++ L +N L +
Sbjct: 69 SSLV--EPSKVGQ--FDQV-LNLCLTEFENCYLEGNDIHALAAKLLQ--ENDTTLVKTKE 121
Query: 114 IVNIGRITIAYTEDQLKSQQMQQ-----FFKYIDENHVKFDLI--------IY-EGL--L 157
+ I T + + + F+ + E + + I Y E L L
Sbjct: 122 L-----IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 158 HTAYLGFLPKLGYTQSMTLMERMNNLFMQLYSKFYIRSRLMKKQDEIMERYFGTRGLSGK 217
+ Y + L++ +L + E+ F T+GL+
Sbjct: 177 YQTYHVLVG--------DLIKFSAETLSELI-----------RTTLDAEKVF-TQGLNIL 216
Query: 218 Q-LEENKTLLFISTSWLLTYPRPV-FPNTILLGPIHLNN----PKPL---PQNLKDWIEG 268
+ LE +LL+ P+ P L+G I L + K L P L+ +++G
Sbjct: 217 EWLENPSNTP--DKDYLLSI--PISCP---LIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 269 A---KDGVIYFSLGTNMQSASLQEDKRKAIVDSFKQFPRHRIIWKWEEDILPDLPSNVIC 325
A G++ +A A DS WE I
Sbjct: 270 ATGHSQGLV---------TAVAI-----AETDS------------WES--FFVSVRKAI- 300
Query: 326 RKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFFADQDT--NVRKLES-MD 382
L FI G++ EA P +P +D+ N + S M
Sbjct: 301 -TVL------------FFI---GVR-CYEA----YPNTSLPPSILEDSLENNEGVPSPM- 338
Query: 383 VARFLEYENITAETLVTLMKSILY-NETVYRKSQVYSKLSNT 423
L +I+ T + + N + QV L N
Sbjct: 339 ----L---SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Score = 37.3 bits (86), Expect = 0.012
Identities = 22/137 (16%), Positives = 33/137 (24%), Gaps = 46/137 (33%)
Query: 185 MQLYSKFYIRSRLMKKQDEIMER-------------------YFGTRGLSGKQLEEN-KT 224
M LY + + D + +FG G GK++ EN
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG--GEKGKRIRENYSA 1690
Query: 225 LLFISTSWLLTYPRPVFPN-TILLGPIHLNNPKP---LPQN---------------LKDW 265
++F + +F + K Q LK
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 266 IEGAKDGVIYF---SLG 279
G F SLG
Sbjct: 1751 --GLIPADATFAGHSLG 1765
Score = 29.6 bits (66), Expect = 2.8
Identities = 30/144 (20%), Positives = 45/144 (31%), Gaps = 51/144 (35%)
Query: 355 AIHFGVPMIGIPFFADQDTNVRKLESMDVARFLEYENITAETLVT--LMKSILYNETVYR 412
IHFG +++ A + +E I L T + K I + T Y
Sbjct: 1673 TIHFGGE------------KGKRIRENYSA--MIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 413 KSQVYSKLS---NTQMMSPKDTAVWWIEY----VLKAEGNVDHLKYNLDQIPWYQY---- 461
LS TQ P A+ +E LK++G IP
Sbjct: 1719 FRSEKGLLSATQFTQ---P---ALTLMEKAAFEDLKSKGL----------IPADATFAGH 1762
Query: 462 ----Y--LVDLAGI--FIAGIFLV 477
Y L LA + + + +V
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVV 1786
Score = 28.1 bits (62), Expect = 7.9
Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 32/125 (25%)
Query: 342 LFIMQGGLQSSQEAIHFGVPMIGIPFFADQ---------DTNVRKLESMD--------VA 384
L + G L+ VP F A Q + D V
Sbjct: 9 LTLSHGSLEHV-----LLVP-TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 385 RFLEY-----ENITAETLVTLMKSILYN-ETVY-RKSQVYSKLSNTQMMSPKDTAVWWIE 437
+FL Y E ++ L E Y + +++ + +++ DT + +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA--KLLQENDTTLVKTK 120
Query: 438 YVLKA 442
++K
Sbjct: 121 ELIKN 125
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 33.2 bits (74), Expect = 0.16
Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 2/81 (2%)
Query: 309 WKWEEDILPDLPSNVICRKWLPQHDILAHPKVKLFIMQGGLQSSQEAIHFGVPMIGIPFF 368
+ L +N+ L + + I+ EA+ I +
Sbjct: 196 NLKKLQKFAKLHNNIRLFIDHENIAKLMN-ESNKLIISASS-LVNEALLLKANFKAICYV 253
Query: 369 ADQDTNVRKLESMDVARFLEY 389
+Q++ L +Y
Sbjct: 254 KNQESTATWLAKKGYEVEYKY 274
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin
A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB:
2iv3_A*
Length = 342
Score = 29.7 bits (67), Expect = 1.8
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 15/50 (30%)
Query: 32 VLIICPTPSYSHQ-----VPFIAIG----------KELVRRGHTVTMIGT 66
V ++ VP G L+ GH V ++G
Sbjct: 6 VALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGA 55
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 29.2 bits (65), Expect = 2.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 49 AIGKELVRRGHTVTMIGTDPLKEPPV 74
AI E RRGH V + DP K
Sbjct: 15 AIVAEARRRGHEVLAVVRDPQKAADR 40
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 28.8 bits (64), Expect = 3.2
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 49 AIGKELVRRGHTVTMIGTDPLKEPPVN 75
I +E RGH VT I + K +
Sbjct: 15 RILEEAKNRGHEVTAIVRNAGKITQTH 41
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 28.8 bits (64), Expect = 4.0
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 264 DWIEGAKDGVIYFSLGTNMQSASLQEDKR-KAIVD-----SFKQF----PRHRIIWKWEE 313
+ I GV+ SLG N S + R A + + P + WK+
Sbjct: 218 EAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSDLDYWDLETPLTKESWKYVS 277
Query: 314 DILPDLPSNVICRKWLPQHDILAHPKVKLFIMQG 347
+ + + L D+L+ +I+ G
Sbjct: 278 KVDTLEEARLHVHAALETRDVLSQIACPTYILHG 311
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide)
pyrophosphoryl-undecaprenol...; rossmann fold,
transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2
PDB: 1nlm_A*
Length = 364
Score = 28.6 bits (65), Expect = 4.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 43 HQVPFIAIGKELVRRGHTVTMIGTD 67
H P +A+ L+ +G V +GT
Sbjct: 19 HVFPGLAVAHHLMAQGWQVRWLGTA 43
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 27.7 bits (62), Expect = 6.9
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 49 AIGKELVRRGHTVTMIGTDPLKEPPVN 75
A+ E + RG VT + P K N
Sbjct: 19 ALLNEALNRGFEVTAVVRHPEKIKIEN 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.418
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,384,081
Number of extensions: 443937
Number of successful extensions: 1032
Number of sequences better than 10.0: 1
Number of HSP's gapped: 986
Number of HSP's successfully gapped: 54
Length of query: 477
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 380
Effective length of database: 3,993,456
Effective search space: 1517513280
Effective search space used: 1517513280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)