BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15587
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4ZIN3|MBRL_HUMAN Membralin OS=Homo sapiens GN=C19orf6 PE=1 SV=1
Length = 620
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 63/74 (85%), Positives = 69/74 (93%)
Query: 1 MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
+VDLLQMLE N+ + FPAAPLLTVILALVGMEAIMSEFF+DT+TAFYIILIVWLADQYDA
Sbjct: 333 IVDLLQMLEMNMAIAFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILIVWLADQYDA 392
Query: 61 ICCHTVITKRHWLR 74
ICCHT +KRHWLR
Sbjct: 393 ICCHTSTSKRHWLR 406
>sp|Q8CIV2|MBRL_MOUSE Membralin OS=Mus musculus GN=ORF61 PE=1 SV=2
Length = 574
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 68/74 (91%)
Query: 1 MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
+VDLLQMLE N+ + FPAAPLLTVILALVGMEAIMSEFF+DT+TAFYIIL VWLADQYDA
Sbjct: 324 IVDLLQMLEMNMAIAFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILTVWLADQYDA 383
Query: 61 ICCHTVITKRHWLR 74
ICCHT +KRHWLR
Sbjct: 384 ICCHTNTSKRHWLR 397
>sp|A4VHH5|Y721_PSEU5 UPF0229 protein PST_0721 OS=Pseudomonas stutzeri (strain A1501)
GN=PST_0721 PE=3 SV=1
Length = 423
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 8 LEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAI 61
L++N+ V P V+ L+ + M++ D + F+I+L ++L YD I
Sbjct: 232 LKYNLLVKHPNPSSKAVMFCLMDVSGSMTQSTKDIAKRFFILLYLFLKRNYDKI 285
>sp|Q6P8Y0|CO026_MOUSE Uncharacterized protein C15orf26 homolog OS=Mus musculus PE=2 SV=1
Length = 303
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 93 RNGYGPGFDRGNSNKGYYLAMAEKEMDTVRGLIEGTLTREVLPSRNRR 140
+N YGPG GN N+ YL E + +R +E E+L RNRR
Sbjct: 3 QNVYGPGVRMGNWNEDVYL-----EEERMRHFLEKREKGELLIQRNRR 45
>sp|Q4ZMG0|Y4632_PSEU2 UPF0229 protein Psyr_4632 OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=Psyr_4632 PE=3 SV=1
Length = 423
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 8 LEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAI 61
L++N+ V P V+ L+ + M++ D + F+I+L ++L YD I
Sbjct: 232 LKYNLLVKQPNPSSKAVMFCLMDVSGSMTQATKDIAKRFFILLYLFLKRNYDKI 285
>sp|Q48NU2|Y628_PSE14 UPF0229 protein PSPPH_0628 OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=PSPPH_0628 PE=3 SV=1
Length = 423
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 8 LEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAI 61
L++N+ V P V+ L+ + M++ D + F+I+L ++L YD I
Sbjct: 232 LKYNLLVKQPNPSSKAVMFCLMDVSGSMTQATKDIAKRFFILLYLFLKRNYDKI 285
>sp|Q88A51|Y546_PSESM UPF0229 protein PSPTO_0546 OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=PSPTO_0546 PE=3 SV=1
Length = 423
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 8 LEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAI 61
L++N+ V P V+ L+ + M++ D + F+I+L ++L YD I
Sbjct: 232 LKYNLLVKQPNPSSKAVMFCLMDVSGSMTQATKDIAKRFFILLYLFLKRNYDKI 285
>sp|Q4K4X0|Y5654_PSEF5 UPF0229 protein PFL_5654 OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=PFL_5654 PE=3 SV=1
Length = 424
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 8 LEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAI 61
L++N+ V P V+ L+ + M++ D + F+I+L ++L YD I
Sbjct: 233 LKYNLLVKQPNPSSKAVMFCLMDVSGSMTQATKDIAKRFFILLYLFLKRNYDKI 286
>sp|C3K332|Y5583_PSEFS UPF0229 protein PFLU_5583 OS=Pseudomonas fluorescens (strain SBW25)
GN=PFLU_5583 PE=3 SV=1
Length = 423
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 8 LEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAI 61
L++N+ V P V+ L+ + M++ D + F+I+L ++L YD I
Sbjct: 232 LKYNLLVKQPNPSSKAVMFCLMDVSGSMTQATKDIAKRFFILLYLFLKRNYDKI 285
>sp|Q3K5S7|Y5140_PSEPF UPF0229 protein Pfl01_5140 OS=Pseudomonas fluorescens (strain
Pf0-1) GN=Pfl01_5140 PE=3 SV=1
Length = 423
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 8 LEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAI 61
L++N+ V P V+ L+ + M++ D + F+I+L ++L YD I
Sbjct: 232 LKYNLLVKQPNPSSKAVMFCLMDVSGSMTQATKDIAKRFFILLYLFLKRNYDKI 285
>sp|B0KJ88|Y427_PSEPG UPF0229 protein PputGB1_0427 OS=Pseudomonas putida (strain GB-1)
GN=PputGB1_0427 PE=3 SV=1
Length = 424
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 8 LEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAI 61
L++N+ V P V+ L+ + M++ D + F+I+L ++L YD I
Sbjct: 233 LKYNLLVKQPNPSSKAVMFCLMDVSGSMTQATKDIAKRFFILLYLFLKRNYDRI 286
>sp|C1DIX4|Y4688_AZOVD UPF0229 protein Avin_46880 OS=Azotobacter vinelandii (strain DJ /
ATCC BAA-1303) GN=Avin_46880 PE=3 SV=1
Length = 424
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 8 LEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAI 61
L++N+ V P V+ L+ + M++ D + F+I+L ++L YD I
Sbjct: 233 LKYNLLVKQPNPSSKAVMFCLMDVSGSMTQATKDIAKRFFILLYLFLKRSYDKI 286
>sp|B1JDX9|Y4806_PSEPW UPF0229 protein PputW619_4806 OS=Pseudomonas putida (strain W619)
GN=PputW619_4806 PE=3 SV=1
Length = 423
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 8 LEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAI 61
L++N+ V P V+ L+ + M++ D + F+I+L ++L YD I
Sbjct: 232 LKYNLLVKQPNPSSKAVMFCLMDVSGSMTQATKDIAKRFFILLYLFLKRNYDRI 285
>sp|Q1IG25|Y423_PSEE4 UPF0229 protein PSEEN0423 OS=Pseudomonas entomophila (strain L48)
GN=PSEEN0423 PE=3 SV=1
Length = 423
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 8 LEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAI 61
L++N+ + P V+ L+ + M++ D + F+I+L ++L YD I
Sbjct: 232 LKYNLLIKQPNPSSKAVMFCLMDVSGSMTQATKDIAKRFFILLYLFLKRNYDRI 285
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.141 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,074,174
Number of Sequences: 539616
Number of extensions: 2105434
Number of successful extensions: 4471
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4451
Number of HSP's gapped (non-prelim): 25
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)