Query psy15587
Match_columns 140
No_of_seqs 30 out of 32
Neff 2.1
Searched_HMMs 46136
Date Fri Aug 16 16:24:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09746 Membralin: Tumour-ass 100.0 6.1E-37 1.3E-41 263.0 2.2 70 1-70 306-375 (375)
2 KOG2092|consensus 98.6 3.3E-08 7.2E-13 86.6 2.9 92 4-101 113-220 (381)
3 PF09569 RE_ScaI: ScaI restric 70.1 13 0.00028 31.0 5.5 86 15-120 56-146 (191)
4 KOG4452|consensus 61.4 7.4 0.00016 28.5 2.3 30 3-32 2-31 (79)
5 PF00842 Ala_racemase_C: Alani 54.4 5.2 0.00011 29.7 0.5 19 94-112 39-57 (129)
6 PF11108 Phage_glycop_gL: Vira 41.6 15 0.00033 27.9 1.3 29 62-94 2-31 (111)
7 PRK02624 psbH photosystem II r 31.3 66 0.0014 22.9 3.1 41 2-44 8-54 (64)
8 cd06826 PLPDE_III_AR2 Type III 30.2 29 0.00064 29.0 1.4 18 94-111 275-292 (365)
9 TIGR00492 alr alanine racemase 30.1 30 0.00065 28.6 1.4 17 94-110 281-297 (367)
10 PF00737 PsbH: Photosystem II 29.0 89 0.0019 21.4 3.3 40 2-43 5-50 (52)
11 CHL00066 psbH photosystem II p 28.3 77 0.0017 23.0 3.1 41 2-44 20-66 (73)
12 KOG4788|consensus 25.9 22 0.00048 27.5 -0.0 28 34-61 103-130 (172)
13 PF00526 Dicty_CTDC: Dictyoste 25.9 29 0.00063 20.0 0.4 8 61-68 13-20 (24)
14 PLN00055 photosystem II reacti 24.9 96 0.0021 22.5 3.0 41 2-44 20-66 (73)
15 PRK03646 dadX alanine racemase 23.9 45 0.00097 28.2 1.4 19 94-112 269-287 (355)
16 PRK13340 alanine racemase; Rev 22.4 50 0.0011 28.1 1.4 18 94-111 315-332 (406)
17 TIGR03510 XapX XapX domain. Th 21.4 80 0.0017 21.0 1.9 19 13-31 20-38 (49)
18 smart00712 PUR DNA/RNA-binding 21.4 41 0.00089 22.8 0.6 20 100-119 16-35 (63)
No 1
>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].
Probab=100.00 E-value=6.1e-37 Score=262.96 Aligned_cols=70 Identities=84% Similarity=1.337 Sum_probs=69.1
Q ss_pred ChhhhhhhhhceeeecCchhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhhhhhccccceeeeecccccc
Q psy15587 1 MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAICCHTVITKR 70 (140)
Q Consensus 1 ivDLLqMLefN~~l~fPaapLlTVILaLVGmeaIMsEFFnDtttAFYVILiVWlADqYdaicchT~iSkr 70 (140)
|+||+||+|+|.++.+|+|||+||||||||||+||||||||++|||||||+||+|||||+||||||+|||
T Consensus 306 iv~ll~~~~~~~~~~~p~a~llt~il~lvgm~~~m~eff~d~~~af~vil~vw~~d~~~~i~c~t~~~~r 375 (375)
T PF09746_consen 306 IVDLLQMLEHNLPIFFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYVILIVWLADQYDAICCHTPISKR 375 (375)
T ss_pred HHHHHHHHHhcCccccccceeeeeehhhHHHHHHHHHHhcchhHHHHHHHHHHHHhhccEEEecCccCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999997
No 2
>KOG2092|consensus
Probab=98.56 E-value=3.3e-08 Score=86.55 Aligned_cols=92 Identities=29% Similarity=0.495 Sum_probs=80.7
Q ss_pred hhhhhhhceee------ecCchhHHHHHH--------HHHHHHHHHhhhcCCcchhhhhhhhhhhccccceeeeeccccc
Q psy15587 4 LLQMLEFNVTV------TFPAAPLLTVIL--------ALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAICCHTVITK 69 (140)
Q Consensus 4 LLqMLefN~~l------~fPaapLlTVIL--------aLVGmeaIMsEFFnDtttAFYVILiVWlADqYdaicchT~iSk 69 (140)
-.||..|.++| +.|+..++.|-- .+||+....+||++|+..+||+.+.||+|+.+.++..+||++|
T Consensus 113 w~R~gi~rVev~~H~s~r~p~Fl~f~~~~~~~~vF~~~aI~i~s~l~~~~~e~~e~~m~~~~~~~~~~f~ld~e~~~i~k 192 (381)
T KOG2092|consen 113 WTRMGIFRVEVQHHASHRLPTFLLFFVHVIESLVFVPIAIGILSFLFEFYDEQLEAFMVLVLVWLCELFTLDSERTPISK 192 (381)
T ss_pred hhhheeEEEEEEecchhcchHHHHHHhhhcccccccchhhhHHHhhHHHhcccHHHHHHHHHHHHHHheeeecccccccC
Confidence 45788888877 489999888622 3788999999999999999999999999999999999999999
Q ss_pred cccccccc--hhhhhhheeecCCccccCCCCCcC
Q psy15587 70 RHWLRKPL--GSSLVIAILFGDGRKRNGYGPGFD 101 (140)
Q Consensus 70 rhWlRF~l--~~~l~~~ilf~~~~~~~~~~~~~~ 101 (140)
|+.+|++| ++.+++||+|=. |-||+.
T Consensus 193 ~~~p~e~Lnd~~e~~fh~~~f~------~~~g~~ 220 (381)
T KOG2092|consen 193 KFFPREFLNDLYELVFHIYFFS------YAYGFS 220 (381)
T ss_pred CCCcHHHhcchhhcccchhhhh------hccCch
Confidence 99999999 999999999853 566654
No 3
>PF09569 RE_ScaI: ScaI restriction endonuclease; InterPro: IPR019069 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the restriction endonuclease ScaI, which recognises and cleaves the double-stranded sequence AGT^ACT.
Probab=70.09 E-value=13 Score=31.02 Aligned_cols=86 Identities=24% Similarity=0.407 Sum_probs=58.7
Q ss_pred ecCchhHHHHHH-HHHHHH--HHHhhhcCCcchhhhhhhhhhhccccceeeeeccccccccccccchhhhhhheeecCCc
Q psy15587 15 TFPAAPLLTVIL-ALVGME--AIMSEFFSDTSTAFYIILIVWLADQYDAICCHTVITKRHWLRKPLGSSLVIAILFGDGR 91 (140)
Q Consensus 15 ~fPaapLlTVIL-aLVGme--aIMsEFFnDtttAFYVILiVWlADqYdaicchT~iSkrhWlRF~l~~~l~~~ilf~~~~ 91 (140)
-||-++.+-++| .||+.+ +-.+..-.|.+-. ===+|.+-|.+=+|=.-|+-+++|. ||.
T Consensus 56 IFP~PQimGf~Lh~LI~~~i~~~~p~Wr~~~t~~--~KDiv~i~~~~ysiEiKTSS~~~~i--------------~gN-- 117 (191)
T PF09569_consen 56 IFPKPQIMGFFLHELIAQYIAVKYPNWRGDKTKY--EKDIVNIPNPFYSIEIKTSSSPKQI--------------YGN-- 117 (191)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhhCCccccCCccc--ccceeeccCCceeEEEeccCCccce--------------ecc--
Confidence 589999999977 677764 4445544444433 3446777777778888888888762 342
Q ss_pred cccCCC-CCcCCCCCCcceeeeeh-hhhhhh
Q psy15587 92 KRNGYG-PGFDRGNSNKGYYLAMA-EKEMDT 120 (140)
Q Consensus 92 ~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 120 (140)
+.|| ++=++-.|..|||||.- ||=+++
T Consensus 118 --RSy~q~~~~~kKsK~GYYlaINfekf~~~ 146 (191)
T PF09569_consen 118 --RSYGQNSDNSKKSKDGYYLAINFEKFSET 146 (191)
T ss_pred --cccccCCCCCccccCceEEEEEeeccCcc
Confidence 4676 56666678889999975 665655
No 4
>KOG4452|consensus
Probab=61.41 E-value=7.4 Score=28.49 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=26.7
Q ss_pred hhhhhhhhceeeecCchhHHHHHHHHHHHH
Q psy15587 3 DLLQMLEFNVTVTFPAAPLLTVILALVGME 32 (140)
Q Consensus 3 DLLqMLefN~~l~fPaapLlTVILaLVGme 32 (140)
|+-.|-+...++.+.+.|.+|++|.-+|+-
T Consensus 2 ~~~~M~RYtsPVNpAvfPhLttvLl~iG~f 31 (79)
T KOG4452|consen 2 DISKMNRYTSPVNPAVFPHLTTVLLGIGLF 31 (79)
T ss_pred chHHHhhhcCCCChhHhHHHHHHHHHHHHH
Confidence 667788899999999999999999999983
No 5
>PF00842 Ala_racemase_C: Alanine racemase, C-terminal domain; InterPro: IPR011079 Alanine racemase (5.1.1.1 from EC) plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins contains this domain are found in both prokaryotic and eukaryotic proteins [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus (Geobacillus stearothermophilus) was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strand. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel.; GO: 0008784 alanine racemase activity, 0006522 alanine metabolic process; PDB: 3HUR_A 4A3Q_B 3S46_A 1RCQ_A 3CO8_A 1VFT_B 1VFH_A 1VFS_B 2DY3_B 4ECL_C ....
Probab=54.41 E-value=5.2 Score=29.70 Aligned_cols=19 Identities=53% Similarity=0.840 Sum_probs=14.6
Q ss_pred cCCCCCcCCCCCCcceeee
Q psy15587 94 NGYGPGFDRGNSNKGYYLA 112 (140)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~ 112 (140)
=|||-||.|..||+|+-+.
T Consensus 39 iGYaDG~~r~~~~~~~v~i 57 (129)
T PF00842_consen 39 IGYADGFPRALSNGGYVLI 57 (129)
T ss_dssp --GGGTGGGGGTTTEEEEE
T ss_pred EEeeCCcCcccCCCcEEEE
Confidence 4999999999999886543
No 6
>PF11108 Phage_glycop_gL: Viral glycoprotein L; InterPro: IPR020175 Herpesviruses are enveloped by a lipid bilayer that contains at least a dozen glycoproteins. The virion surface glycoproteins mediate recognition of susceptible cells and promote fusion of the viral envelope with the cell membrane, leading to virus entry. No single glycoprotein associated with the virion membrane has been identified as the fusogen []. Glycoprotein L (gL) forms a non-covalently linked heterodimer with glycoprotein H (gH). This heterodimer is essential for virus-cell and cell-cell fusion since the association of gH and gL is necessary for correct localisation of gH to the virion or cell surface. gH anchoring the heterodimer to the plasma membrane through its transmembrane domain. gL lacks a transmembrane domain and is secreted from cells when expressed in the absence of gH [].; PDB: 3PHF_N.
Probab=41.60 E-value=15 Score=27.88 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=11.9
Q ss_pred eee-ccccccccccccchhhhhhheeecCCcccc
Q psy15587 62 CCH-TVITKRHWLRKPLGSSLVIAILFGDGRKRN 94 (140)
Q Consensus 62 cch-T~iSkrhWlRF~l~~~l~~~ilf~~~~~~~ 94 (140)
||| ++..+++|| ..++++ .|||-+-..=+
T Consensus 2 CC~I~~~~~~~~p---~~~~I~-~Iyl~~p~tC~ 31 (111)
T PF11108_consen 2 CCHIQALNETHLP---SLFSIS-SIYLTSPSTCN 31 (111)
T ss_dssp -----S-TSSS------TTT---EEEE--TTSSS
T ss_pred CcccccccccCCc---chhhhh-heeecCcccCC
Confidence 999 999999998 334455 78887755433
No 7
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=31.26 E-value=66 Score=22.89 Aligned_cols=41 Identities=24% Similarity=0.428 Sum_probs=30.6
Q ss_pred hhhhhhhhhceee--ecC---chhHHHHHHHHHHH-HHHHhhhcCCcch
Q psy15587 2 VDLLQMLEFNVTV--TFP---AAPLLTVILALVGM-EAIMSEFFSDTST 44 (140)
Q Consensus 2 vDLLqMLefN~~l--~fP---aapLlTVILaLVGm-eaIMsEFFnDttt 44 (140)
.|+|+.| |... .-| +.|++-|..+|+.. ..|+.|.||.+.+
T Consensus 8 G~lLkpL--NSEyGKVaPGWGTTplMgv~m~Lf~vFl~iiLeIYNsSvl 54 (64)
T PRK02624 8 GDLLKPL--NSEYGKVVPGWGTTPVMAVFMVLFLVFLLIILQIYNQSLL 54 (64)
T ss_pred hhhcccc--ccccCcccCCccchHHHHHHHHHHHHHHHHHHHHhCccee
Confidence 4667776 4333 234 68999999998877 7999999998754
No 8
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=30.16 E-value=29 Score=28.97 Aligned_cols=18 Identities=44% Similarity=0.661 Sum_probs=15.2
Q ss_pred cCCCCCcCCCCCCcceee
Q psy15587 94 NGYGPGFDRGNSNKGYYL 111 (140)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~ 111 (140)
=||+-|+.|..||+|+-+
T Consensus 275 iGYaDG~~r~ls~~~~v~ 292 (365)
T cd06826 275 VGYSDGYRRSFSNKAHVL 292 (365)
T ss_pred eecccCcCccCCCCcEEE
Confidence 489999999999997643
No 9
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=30.06 E-value=30 Score=28.56 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=15.0
Q ss_pred cCCCCCcCCCCCCccee
Q psy15587 94 NGYGPGFDRGNSNKGYY 110 (140)
Q Consensus 94 ~~~~~~~~~~~~~~~~~ 110 (140)
=||+-||.|..||||+-
T Consensus 281 ~GYaDG~~r~~s~~~~v 297 (367)
T TIGR00492 281 IGYADGYPRALSNGTPV 297 (367)
T ss_pred eecccCcCcccCCCcEE
Confidence 48999999999999975
No 10
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=28.99 E-value=89 Score=21.38 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=28.2
Q ss_pred hhhhhhhhhceee-----ecCchhHHHHHHHHHHH-HHHHhhhcCCcc
Q psy15587 2 VDLLQMLEFNVTV-----TFPAAPLLTVILALVGM-EAIMSEFFSDTS 43 (140)
Q Consensus 2 vDLLqMLefN~~l-----~fPaapLlTVILaLVGm-eaIMsEFFnDtt 43 (140)
.|+|+.| |..- .--+.|++.+..+|+.. ..|+.|.||.+.
T Consensus 5 g~lLKpL--NSeyGkVaPGWGTtplM~~~m~lf~vfl~iiL~IyNssv 50 (52)
T PF00737_consen 5 GDLLKPL--NSEYGKVAPGWGTTPLMGVFMALFAVFLLIILEIYNSSV 50 (52)
T ss_dssp HHHCCCC--CCSTT--BSTTTTHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhccccc--cccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3555555 4332 23367999998888776 789999999874
No 11
>CHL00066 psbH photosystem II protein H
Probab=28.33 E-value=77 Score=22.98 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=30.2
Q ss_pred hhhhhhhhhceee--ecC---chhHHHHHHHHHHH-HHHHhhhcCCcch
Q psy15587 2 VDLLQMLEFNVTV--TFP---AAPLLTVILALVGM-EAIMSEFFSDTST 44 (140)
Q Consensus 2 vDLLqMLefN~~l--~fP---aapLlTVILaLVGm-eaIMsEFFnDttt 44 (140)
.|+|+.| |... .-| +.|++-|+.+|+.. ..|+.|.||.+.+
T Consensus 20 G~lLKPL--NSeyGkvapgWGTtp~Mgv~m~lf~vfl~iiLeiyNssvl 66 (73)
T CHL00066 20 GNLLKPL--NSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVL 66 (73)
T ss_pred ccccccc--ccccCcccCCccchHHHHHHHHHHHHHHHHHHHHhCccee
Confidence 4666666 4433 333 68999999998877 7999999998754
No 12
>KOG4788|consensus
Probab=25.90 E-value=22 Score=27.48 Aligned_cols=28 Identities=11% Similarity=0.376 Sum_probs=25.6
Q ss_pred HHhhhcCCcchhhhhhhhhhhcccccee
Q psy15587 34 IMSEFFSDTSTAFYIILIVWLADQYDAI 61 (140)
Q Consensus 34 IMsEFFnDtttAFYVILiVWlADqYdai 61 (140)
++++++|+-..+++.+..+|++++++..
T Consensus 103 ~~~~l~~~~v~~~~~~i~~~~~~~~~~~ 130 (172)
T KOG4788|consen 103 FLLDLLNLVVALLLFAIASWVLAQFSAT 130 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4899999999999999999999999765
No 13
>PF00526 Dicty_CTDC: Dictyostelium (slime mold) repeat; InterPro: IPR001673 Several Dictyostelium species have proteins that contain conserved repeats. These proteins have been variously described as 'extracellular matrix protein B', 'cyclic nucleotide phosphodiesterase inhibitor precursor', 'prestalk protein precursor', 'putative calmodulin-binding protein CamBP64', and 'cysteine-rich, acidic integral membrane protein precursor' as well as 'hypothetical protein'.
Probab=25.86 E-value=29 Score=19.98 Aligned_cols=8 Identities=50% Similarity=0.800 Sum_probs=6.9
Q ss_pred eeeecccc
Q psy15587 61 ICCHTVIT 68 (140)
Q Consensus 61 icchT~iS 68 (140)
-|+||||+
T Consensus 13 GC~htpi~ 20 (24)
T PF00526_consen 13 GCVHTPIS 20 (24)
T ss_pred CEECcccc
Confidence 49999986
No 14
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=24.86 E-value=96 Score=22.48 Aligned_cols=41 Identities=32% Similarity=0.496 Sum_probs=30.3
Q ss_pred hhhhhhhhhceee--ecC---chhHHHHHHHHHHH-HHHHhhhcCCcch
Q psy15587 2 VDLLQMLEFNVTV--TFP---AAPLLTVILALVGM-EAIMSEFFSDTST 44 (140)
Q Consensus 2 vDLLqMLefN~~l--~fP---aapLlTVILaLVGm-eaIMsEFFnDttt 44 (140)
.|+|+.| |... .-| +.|++-|+.+|+.. ..|+.|.||.+.+
T Consensus 20 G~lLKPL--NSeyGkvapgWGTtp~Mg~~m~lf~vfl~iileiyNssvl 66 (73)
T PLN00055 20 GDLLKPL--NSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVL 66 (73)
T ss_pred ccccccc--ccccCcccCCccchhHHHHHHHHHHHHHHHHHHHhcccee
Confidence 4667766 4433 333 68999999998877 7899999998753
No 15
>PRK03646 dadX alanine racemase; Reviewed
Probab=23.94 E-value=45 Score=28.16 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.0
Q ss_pred cCCCCCcCCCCCCcceeee
Q psy15587 94 NGYGPGFDRGNSNKGYYLA 112 (140)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~ 112 (140)
=||+-|+.|.-||+|+.+.
T Consensus 269 iGYaDG~~r~ls~~~~v~i 287 (355)
T PRK03646 269 AGYADGYPRHAPTGTPVLV 287 (355)
T ss_pred eccccccCcccCCCCEEEE
Confidence 5899999999999987543
No 16
>PRK13340 alanine racemase; Reviewed
Probab=22.42 E-value=50 Score=28.10 Aligned_cols=18 Identities=44% Similarity=0.656 Sum_probs=15.1
Q ss_pred cCCCCCcCCCCCCcceee
Q psy15587 94 NGYGPGFDRGNSNKGYYL 111 (140)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~ 111 (140)
=||+-|+.|.-||+|+-+
T Consensus 315 iGYaDG~~r~ls~~~~v~ 332 (406)
T PRK13340 315 VGYSDGYPRHASNKAPVL 332 (406)
T ss_pred eecccCcCccCCCCcEEE
Confidence 489999999999998643
No 17
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=21.39 E-value=80 Score=21.03 Aligned_cols=19 Identities=42% Similarity=0.765 Sum_probs=16.0
Q ss_pred eeecCchhHHHHHHHHHHH
Q psy15587 13 TVTFPAAPLLTVILALVGM 31 (140)
Q Consensus 13 ~l~fPaapLlTVILaLVGm 31 (140)
.+..|+.|.+.=++.++||
T Consensus 20 ~vp~PAPP~laGl~gi~gm 38 (49)
T TIGR03510 20 KVPSPAPPVLAGLVGLLGM 38 (49)
T ss_pred CCCCCCCchHHHHHHHHHH
Confidence 4678999999978888888
No 18
>smart00712 PUR DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.
Probab=21.35 E-value=41 Score=22.82 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=16.4
Q ss_pred cCCCCCCcceeeeehhhhhh
Q psy15587 100 FDRGNSNKGYYLAMAEKEMD 119 (140)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~ 119 (140)
||-+..++|+||..+|.-..
T Consensus 16 fDvk~N~rG~fLrIsE~~~~ 35 (63)
T smart00712 16 FDVKENRRGRFLRISEVKNN 35 (63)
T ss_pred EEecccCCccEEEEEEecCC
Confidence 78888899999999986443
Done!