Query psy15587
Match_columns 140
No_of_seqs 30 out of 32
Neff 2.1
Searched_HMMs 29240
Date Fri Aug 16 16:24:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_H Photosystem II reaction 30.7 47 0.0016 22.7 3.2 41 2-44 7-53 (65)
2 3kw3_A Alanine racemase; niaid 17.8 38 0.0013 27.7 0.9 18 94-111 289-306 (376)
3 4ecl_A Serine racemase, vantg; 17.5 39 0.0013 27.3 0.9 18 94-111 282-300 (374)
4 3ca8_A Protein YDCF; two domai 15.6 32 0.0011 27.1 -0.1 42 91-138 221-264 (266)
5 4f4l_A ION transport protein; 13.7 56 0.0019 22.2 0.8 49 25-73 19-75 (112)
6 4fdd_B RNA-binding protein FUS 12.7 69 0.0024 18.9 0.9 9 91-99 4-12 (29)
7 3e5p_A Alanine racemase; ALR, 10.8 65 0.0022 26.1 0.4 15 94-108 284-298 (371)
8 3mub_A Alanine racemase; alpha 10.7 66 0.0023 26.0 0.4 15 94-108 280-294 (367)
9 3i5x_A ATP-dependent RNA helic 9.9 62 0.0021 25.9 0.0 20 88-107 6-25 (563)
10 1vr0_A Probable 2-phosphosulfo 9.0 1.3E+02 0.0044 23.9 1.5 17 93-109 83-100 (247)
No 1
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=30.67 E-value=47 Score=22.68 Aligned_cols=41 Identities=29% Similarity=0.446 Sum_probs=30.6
Q ss_pred hhhhhhhhhceee--ecC---chhHHHHHHHHHHH-HHHHhhhcCCcch
Q psy15587 2 VDLLQMLEFNVTV--TFP---AAPLLTVILALVGM-EAIMSEFFSDTST 44 (140)
Q Consensus 2 vDLLqMLefN~~l--~fP---aapLlTVILaLVGm-eaIMsEFFnDttt 44 (140)
.|+|+.| |... .-| +.|++-|..+|+.. ..|+.|.||.+.+
T Consensus 7 G~~LKpL--NSeyGKvaPGWGTtplMgv~m~Lf~vFl~iiLeIYNsSvl 53 (65)
T 3arc_H 7 GDILRPL--NSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLI 53 (65)
T ss_dssp HHHHGGG--GCCTTCCBSTTTTHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhcccc--ccccCcccCCccChhHHHHHHHHHHHHHHHHHHHhCccee
Confidence 4677765 5443 233 78999999998877 7999999998754
No 2
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=17.79 E-value=38 Score=27.65 Aligned_cols=18 Identities=44% Similarity=0.573 Sum_probs=15.5
Q ss_pred cCCCCCcCCCCCCcceee
Q psy15587 94 NGYGPGFDRGNSNKGYYL 111 (140)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~ 111 (140)
=||+-|+.|..||+|+-+
T Consensus 289 iGYaDG~~R~~s~~~~v~ 306 (376)
T 3kw3_A 289 IGYADGWPRILSNKGTVY 306 (376)
T ss_dssp CCGGGTCCGGGTTTCEEE
T ss_pred ecccccchhhcCCCceEE
Confidence 399999999999998654
No 3
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=17.50 E-value=39 Score=27.28 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=14.8
Q ss_pred cCCCCCcCCCCCCc-ceee
Q psy15587 94 NGYGPGFDRGNSNK-GYYL 111 (140)
Q Consensus 94 ~~~~~~~~~~~~~~-~~~~ 111 (140)
=||+-|+.|.-||+ |+-+
T Consensus 282 iGYaDG~~R~l~~~~~~v~ 300 (374)
T 4ecl_A 282 IGYADGFPRNLSCGNSYVL 300 (374)
T ss_dssp CCGGGTCCGGGTTTSCEEE
T ss_pred cccccccchhccCCceEEE
Confidence 39999999999999 5543
No 4
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=15.59 E-value=32 Score=27.12 Aligned_cols=42 Identities=19% Similarity=0.454 Sum_probs=24.3
Q ss_pred ccccCCCCCcCCCCCCcceee--eehhhhhhhhhhhhhcceecccccCCC
Q psy15587 91 RKRNGYGPGFDRGNSNKGYYL--AMAEKEMDTVRGLIEGTLTREVLPSRN 138 (140)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (140)
..-||||| ..|||-. ..-++-++.-+-|.+...+++.|-||.
T Consensus 221 ~~~~gYgp------~~~gf~~~~~iP~~V~~A~~~l~~~~~~~~~~~~~~ 264 (266)
T 3ca8_A 221 DDSDGYGP------RGRDFIVHVDFPAEVIHAWQTLKHDAVLIEAMESRS 264 (266)
T ss_dssp CSTTSSST------TTTCSSCCCCCCHHHHHHHHHHHTCHHHHHHHHHSC
T ss_pred hcccccCc------cCCCccccCcCCHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 44689998 2466644 234444455566666555566665553
No 5
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=13.74 E-value=56 Score=22.24 Aligned_cols=49 Identities=18% Similarity=0.340 Sum_probs=31.8
Q ss_pred HHHHHHHHHH---HhhhcCCcchhhhhhhhh-----hhccccceeeeeccccccccc
Q psy15587 25 ILALVGMEAI---MSEFFSDTSTAFYIILIV-----WLADQYDAICCHTVITKRHWL 73 (140)
Q Consensus 25 ILaLVGmeaI---MsEFFnDtttAFYVILiV-----WlADqYdaicchT~iSkrhWl 73 (140)
|-|++||+.+ .+|.|+|-..|+..+..+ |-.+-|+......|.+.-|+.
T Consensus 19 ifAi~G~~lFg~~~~~~F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi 75 (112)
T 4f4l_A 19 IAAVMATNLYGATFPEWFGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFI 75 (112)
T ss_dssp HHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHH
T ss_pred HHHHHHHHHHCCCccccccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHH
Confidence 5589999865 357799888887766554 554556666666665444443
No 6
>4fdd_B RNA-binding protein FUS; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens}
Probab=12.67 E-value=69 Score=18.93 Aligned_cols=9 Identities=56% Similarity=1.372 Sum_probs=6.7
Q ss_pred ccccCCCCC
Q psy15587 91 RKRNGYGPG 99 (140)
Q Consensus 91 ~~~~~~~~~ 99 (140)
-.|-|||||
T Consensus 4 ~drgG~gpg 12 (29)
T 4fdd_B 4 GDRGGFGPG 12 (29)
T ss_pred cccCCcCCc
Confidence 356789988
No 7
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=10.84 E-value=65 Score=26.08 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=13.4
Q ss_pred cCCCCCcCCCCCCcc
Q psy15587 94 NGYGPGFDRGNSNKG 108 (140)
Q Consensus 94 ~~~~~~~~~~~~~~~ 108 (140)
=||+-|+.|..||++
T Consensus 284 iGYaDG~~R~ls~~~ 298 (371)
T 3e5p_A 284 IGYADGWLRHLQGFT 298 (371)
T ss_dssp CCGGGTCCGGGTTCE
T ss_pred ecchhchhhhcCCCe
Confidence 399999999999985
No 8
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=10.66 E-value=66 Score=25.98 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=13.4
Q ss_pred cCCCCCcCCCCCCcc
Q psy15587 94 NGYGPGFDRGNSNKG 108 (140)
Q Consensus 94 ~~~~~~~~~~~~~~~ 108 (140)
=||+-|+.|..||++
T Consensus 280 iGYaDG~~R~ls~~~ 294 (367)
T 3mub_A 280 IGYADGWTRDMQNFS 294 (367)
T ss_dssp CCGGGTCCGGGTTCE
T ss_pred ecchhchhhhcCCCe
Confidence 499999999999986
No 9
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=9.87 E-value=62 Score=25.89 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=0.0
Q ss_pred cCCccccCCCCCcCCCCCCc
Q psy15587 88 GDGRKRNGYGPGFDRGNSNK 107 (140)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~ 107 (140)
.++|.++|+|.+.+++|+|+
T Consensus 6 ~~~r~~~~~g~~~~~~~~~~ 25 (563)
T 3i5x_A 6 DGNRDQRNFGRNQRNNNSNR 25 (563)
T ss_dssp --------------------
T ss_pred CCCCCCCCCCCCcccCcccc
Confidence 47788889998888777764
No 10
>1vr0_A Probable 2-phosphosulfolactate phosphatase; 15026306, putative 2-phosphosulfolactate phosphatase, struct genomics; HET: 3SL; 2.49A {Clostridium acetobutylicum} SCOP: c.148.1.1
Probab=8.98 E-value=1.3e+02 Score=23.89 Aligned_cols=17 Identities=47% Similarity=0.679 Sum_probs=12.9
Q ss_pred ccCCCC-CcCCCCCCcce
Q psy15587 93 RNGYGP-GFDRGNSNKGY 109 (140)
Q Consensus 93 ~~~~~~-~~~~~~~~~~~ 109 (140)
|+|--+ |||-|||..-|
T Consensus 83 R~g~ki~GFD~gNSP~e~ 100 (247)
T 1vr0_A 83 RKGLKIEGFDFSNSPMEY 100 (247)
T ss_dssp BTTBCCTTCSCCSCGGGC
T ss_pred cCCccCCCCCCCCCHHHH
Confidence 566554 99999998764
Done!