Query psy15587
Match_columns 140
No_of_seqs 30 out of 32
Neff 2.1
Searched_HMMs 13730
Date Fri Aug 16 16:24:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15587.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15587hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vfsa1 b.49.2.2 (A:4-12,A:250 43.8 4.2 0.00031 28.2 1.5 18 94-111 47-64 (145)
2 d2axth1 f.23.33.1 (H:2-65) Pho 42.5 11 0.0008 24.2 3.2 41 2-44 7-53 (64)
3 d1rcqa1 b.49.2.2 (A:1-7,A:234- 36.2 6.6 0.00048 26.7 1.4 18 94-111 44-61 (131)
4 d1xpma2 c.95.1.2 (A:168-388) 3 19.0 16 0.0012 26.5 0.9 14 56-69 58-71 (221)
5 d1vr0a1 c.148.1.1 (A:1-235) 2- 11.9 43 0.0032 24.2 1.6 18 92-109 70-88 (235)
6 d2yzca2 d.96.1.4 (A:142-297) U 11.2 29 0.0021 24.8 0.4 20 119-138 132-151 (156)
7 d2bcgg3 d.16.1.6 (G:302-399) G 11.1 26 0.0019 23.6 0.1 17 100-116 49-65 (98)
8 d1d5ta2 d.16.1.6 (A:292-388) G 9.8 31 0.0023 23.2 0.1 16 101-116 49-64 (97)
9 d1iwda_ d.3.1.1 (A:) Ervatamin 9.8 69 0.005 20.7 2.0 27 93-123 177-204 (215)
10 d1auka_ c.76.1.2 (A:) Arylsulf 9.7 29 0.0021 25.1 -0.1 9 57-66 477-485 (485)
No 1
>d1vfsa1 b.49.2.2 (A:4-12,A:250-385) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]}
Probab=43.80 E-value=4.2 Score=28.16 Aligned_cols=18 Identities=39% Similarity=0.691 Sum_probs=15.8
Q ss_pred cCCCCCcCCCCCCcceee
Q psy15587 94 NGYGPGFDRGNSNKGYYL 111 (140)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~ 111 (140)
=||+-||.|..||+|+-+
T Consensus 47 iGYaDG~~r~l~~~~~V~ 64 (145)
T d1vfsa1 47 AGYADGIPRNASGRGPVL 64 (145)
T ss_dssp CCTTTTCCGGGTTTCEEE
T ss_pred eecccCccccccCCccee
Confidence 499999999999999755
No 2
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=42.47 E-value=11 Score=24.16 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=29.7
Q ss_pred hhhhhhhhhceee--e---cCchhHHHHHHHHHHH-HHHHhhhcCCcch
Q psy15587 2 VDLLQMLEFNVTV--T---FPAAPLLTVILALVGM-EAIMSEFFSDTST 44 (140)
Q Consensus 2 vDLLqMLefN~~l--~---fPaapLlTVILaLVGm-eaIMsEFFnDttt 44 (140)
.|+|+.| |..- . --+.|++.|+.+|+.. ..|+.|.||.+.+
T Consensus 7 G~~Lkpl--NSeyGKVaPGWGTTplMgv~m~Lf~vfl~iiLeiYNss~l 53 (64)
T d2axth1 7 GDILRPL--NSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLI 53 (64)
T ss_dssp HHHHTTT--TTCSSCCCSTTTTHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhcccc--ccccCcccCCcCccHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 3566665 3332 2 2368999999998877 7999999998764
No 3
>d1rcqa1 b.49.2.2 (A:1-7,A:234-357) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=36.25 E-value=6.6 Score=26.69 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=15.7
Q ss_pred cCCCCCcCCCCCCcceee
Q psy15587 94 NGYGPGFDRGNSNKGYYL 111 (140)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~ 111 (140)
=||+-|+.|.-||+|+-+
T Consensus 44 iGYaDG~~r~~~~~~~v~ 61 (131)
T d1rcqa1 44 MGYADGYPRHAADGTLVF 61 (131)
T ss_dssp CCGGGTCCTTCCTTCEEE
T ss_pred eecccceeeecccceeEE
Confidence 489999999999999765
No 4
>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]}
Probab=18.97 E-value=16 Score=26.50 Aligned_cols=14 Identities=29% Similarity=0.736 Sum_probs=12.4
Q ss_pred cccceeeeeccccc
Q psy15587 56 DQYDAICCHTVITK 69 (140)
Q Consensus 56 DqYdaicchT~iSk 69 (140)
+.||.+|.|+|-+|
T Consensus 58 ~dfd~~~fH~P~~k 71 (221)
T d1xpma2 58 ADFASLCFHVPFTK 71 (221)
T ss_dssp GGCSEEEECCSSHH
T ss_pred hhhheEEeecCchh
Confidence 56999999999887
No 5
>d1vr0a1 c.148.1.1 (A:1-235) 2-phosphosulfolactate phosphatase ComB {Clostridium acetobutylicum [TaxId: 1488]}
Probab=11.86 E-value=43 Score=24.23 Aligned_cols=18 Identities=44% Similarity=0.702 Sum_probs=14.2
Q ss_pred cccCCC-CCcCCCCCCcce
Q psy15587 92 KRNGYG-PGFDRGNSNKGY 109 (140)
Q Consensus 92 ~~~~~~-~~~~~~~~~~~~ 109 (140)
.|+|-- ||||-|||..-|
T Consensus 70 Er~g~~i~GFdlgNSP~e~ 88 (235)
T d1vr0a1 70 ERKGLKIEGFDFSNSPMEY 88 (235)
T ss_dssp CBTTBCCTTCSCCSCGGGC
T ss_pred ccCCccCCCcCCCCChHHH
Confidence 567764 899999998765
No 6
>d2yzca2 d.96.1.4 (A:142-297) Urate oxidase (uricase) {Arthrobacter globiformis [TaxId: 1665]}
Probab=11.18 E-value=29 Score=24.79 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=16.4
Q ss_pred hhhhhhhhcceecccccCCC
Q psy15587 119 DTVRGLIEGTLTREVLPSRN 138 (140)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~ 138 (140)
|.=-|+||+|++|+-.|...
T Consensus 132 d~P~G~I~~tv~R~~~~~~~ 151 (156)
T d2yzca2 132 DRPYGLIEATIQREGSRADH 151 (156)
T ss_dssp CSSEEEEEEEEEETTSCSSC
T ss_pred CCCCeeEEEEEEcCCCCccc
Confidence 45679999999999888653
No 7
>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.09 E-value=26 Score=23.64 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=12.1
Q ss_pred cCCCCCCcceeeeehhh
Q psy15587 100 FDRGNSNKGYYLAMAEK 116 (140)
Q Consensus 100 ~~~~~~~~~~~~~~~~~ 116 (140)
..-.-..||||+|+..-
T Consensus 49 ~~h~V~~kg~yiAiVST 65 (98)
T d2bcgg3 49 DAHNVCSKGHYLAIIST 65 (98)
T ss_dssp GGGTSSCTTCEEEEEEE
T ss_pred cccccCCCCcEEEEEEE
Confidence 34455679999998643
No 8
>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.81 E-value=31 Score=23.19 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=11.5
Q ss_pred CCCCCCcceeeeehhh
Q psy15587 101 DRGNSNKGYYLAMAEK 116 (140)
Q Consensus 101 ~~~~~~~~~~~~~~~~ 116 (140)
.-.-..||||+|+..-
T Consensus 49 ~h~V~~kg~yiaiVST 64 (97)
T d1d5ta2 49 AHNVAAQGKYIAIAST 64 (97)
T ss_dssp GGTSSCTTCEEEEEEE
T ss_pred ccccCCCCeEEEEEEE
Confidence 3445679999999643
No 9
>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}
Probab=9.81 E-value=69 Score=20.75 Aligned_cols=27 Identities=26% Similarity=0.610 Sum_probs=16.8
Q ss_pred ccCCCCCcCCCCCCcce-eeeehhhhhhhhhh
Q psy15587 93 RNGYGPGFDRGNSNKGY-YLAMAEKEMDTVRG 123 (140)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 123 (140)
||.+|+++- ++|| |++|-..+.+..=|
T Consensus 177 rNSWG~~WG----d~Gy~~I~~~~~~~~~~CG 204 (215)
T d1iwda_ 177 RNSWGQNWG----NQGYIWMERNVASSAGLCG 204 (215)
T ss_dssp ECSBCTTST----BTTEEEEECSCSSTTCGGG
T ss_pred ECCCCcccc----cCCEEEEECCCCCCCCcCC
Confidence 799999883 4676 45665555443333
No 10
>d1auka_ c.76.1.2 (A:) Arylsulfatase A {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.67 E-value=29 Score=25.10 Aligned_cols=9 Identities=33% Similarity=0.896 Sum_probs=5.9
Q ss_pred ccceeeeecc
Q psy15587 57 QYDAICCHTV 66 (140)
Q Consensus 57 qYdaicchT~ 66 (140)
+. -.|||||
T Consensus 477 ~~-~~~~~~~ 485 (485)
T d1auka_ 477 PR-PACCHCP 485 (485)
T ss_dssp ST-TTTCCBC
T ss_pred CC-CCCCCCC
Confidence 44 5677776
Done!