RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15587
         (140 letters)



>gnl|CDD|118278 pfam09746, Membralin, Tumour-associated protein.  Membralin is
           evolutionarily highly conserved; though it seems to
           represent a unique protein family. The protein appears
           to contain several transmembrane regions. In humans it
           is expressed in certain cancers, particularly ovarian
           cancers. Membralin-like gene homologues have been
           identified in plants including grape, cotton and tomato.
          Length = 375

 Score =  151 bits (383), Expect = 2e-45
 Identities = 61/70 (87%), Positives = 67/70 (95%)

Query: 1   MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
           +VDLLQMLE+NV+  FPAAPLLTVILALVGMEAIMSEFF+DT+TAFYIILIVW+ADQYDA
Sbjct: 306 IVDLLQMLEYNVSARFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILIVWIADQYDA 365

Query: 61  ICCHTVITKR 70
           ICCHT ITKR
Sbjct: 366 ICCHTSITKR 375


>gnl|CDD|167284 PRK01833, tatA, twin arginine translocase protein A; Provisional.
          Length = 74

 Score = 27.2 bits (60), Expect = 1.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 81  LVIAILFGDGRKRNGYGPGFDRGNSNKGYYLAMAEKE 117
            +I +LFG  + R     G D G S KG+  AMA+ +
Sbjct: 14  AIIVLLFGTKKLR---TLGTDLGESVKGFKKAMADDK 47


>gnl|CDD|179867 PRK04598, tatA, twin arginine translocase protein A; Provisional.
          Length = 81

 Score = 26.7 bits (59), Expect = 1.9
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 80  SLVIAILFGDGRKRNGYGPGFDRGNSNKGYYLAMAEKE 117
           ++++ +LFG  + R   G G D G++ KG+  AM+E+E
Sbjct: 13  AVIVVLLFGTKKLR---GIGSDLGSAVKGFKKAMSEEE 47


>gnl|CDD|219941 pfam08623, TIP120, TATA-binding protein interacting (TIP20).
          TIP120 (also known as cullin-associated and
          neddylation-dissociated protein 1) is a TATA binding
          protein interacting protein that enhances
          transcription.
          Length = 169

 Score = 26.4 bits (59), Expect = 4.3
 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 31 MEAIMSEFFSDTS-TAFYIILIVWLADQYD--AICCHTVI 67
          M  ++   FS      F   +   L+D++D   +    + 
Sbjct: 51 MYTLLDSCFSRLDIPEFLDRIEAGLSDEHDIKMLALLMLS 90


>gnl|CDD|225809 COG3270, COG3270, Uncharacterized conserved protein [Function
           unknown].
          Length = 127

 Score = 25.5 bits (56), Expect = 9.2
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 70  RHWLRKPLGSSLVIAILFGDGRKRNGYGPGFDRGNSNKGYYLAMAEKEMDTVRGLIEGTL 129
           R +L++ LG       LFGDG+    Y P   +   + G  L    K     R   EG  
Sbjct: 2   REFLKEQLGYLPGDLQLFGDGKLLYAYKPCLFKEKIHNGIKLGEIHK--KGYRWSHEGGF 59


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.141    0.424 

Gapped
Lambda     K      H
   0.267   0.0838    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,391,358
Number of extensions: 680348
Number of successful extensions: 803
Number of sequences better than 10.0: 1
Number of HSP's gapped: 803
Number of HSP's successfully gapped: 28
Length of query: 140
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 53
Effective length of database: 7,078,804
Effective search space: 375176612
Effective search space used: 375176612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.4 bits)