RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15587
         (140 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.4 bits (65), Expect = 0.46
 Identities = 15/117 (12%), Positives = 38/117 (32%), Gaps = 23/117 (19%)

Query: 1   MVDLLQMLEFNVTVTFPAAP--LLTVILALVGMEAIMSEFFSDTSTAFY----IILI-VW 53
           ++++LQ L + +   + +       + L +  ++A +           Y    ++L+ V 
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP---YENCLLVLLNVQ 254

Query: 54  LADQYDA--ICCHTVITKRHWLRKPLGSSLVIAILFGDGRKR---NGYGPGFDRGNS 105
            A  ++A  + C  ++T R           V   L          + +         
Sbjct: 255 NAKAWNAFNLSCKILLTTR--------FKQVTDFLSAATTTHISLDHHSMTLTPDEV 303


>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP:
           c.94.1.1
          Length = 310

 Score = 28.0 bits (62), Expect = 0.91
 Identities = 7/26 (26%), Positives = 10/26 (38%)

Query: 16  FPAAPLLTVILALVGMEAIMSEFFSD 41
           FP   L T+     G      + F+D
Sbjct: 275 FPKLKLFTIDEVFGGWAKAQKDHFAD 300


>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825
           / FA 1090), DSBC, structural genomics, unknown funct 2;
           2.00A {Neisseria gonorrhoeae}
          Length = 147

 Score = 25.0 bits (54), Expect = 7.2
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 31  MEAIMSEFFSDTSTAFYIILIVWLADQYDAICCHTVITKRHWLRKPLGSSLVIAILFGDG 90
            +A +     D + A+   +         +  C   + +   L +  G +    ++F +G
Sbjct: 60  RKAQILWCQPDRAKAWTDWMRKGKFPVGGS-ICDNPVAETTSLGEQFGFNGTPTLVFPNG 118

Query: 91  RKRNGYGP 98
           R ++GY P
Sbjct: 119 RTQSGYSP 126


>1x5x_A Fibronectin type-III domain containing protein 3A; structural
           genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
           b.1.2.1
          Length = 109

 Score = 24.6 bits (54), Expect = 7.3
 Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 14/45 (31%)

Query: 98  PGFDRGNSNKGYYLAMAEKEMD--------------TVRGLIEGT 128
           P     +    Y L M E+                 TV+ L   T
Sbjct: 31  PSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRST 75


>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for
          structural genomics, JCSG, protein structure INI PSI-2,
          oxidoreductase; 1.84A {Ralstonia eutropha} SCOP:
          b.82.1.19
          Length = 208

 Score = 25.1 bits (54), Expect = 9.6
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 39 FSDTSTAFYIILIVWLADQYDAICCHT 65
            D++  F I+  VW   Q   I  HT
Sbjct: 72 HCDSAERFSIVSFVWGPGQRTPIHDHT 98


>1j2g_A Uricase, urate oxidase; T-fold barrel, purine, oxidoreductase; HET:
           AZA; 2.20A {Bacillus SP} SCOP: d.96.1.4 d.96.1.4
          Length = 319

 Score = 25.3 bits (55), Expect = 9.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 123 GLIEGTLTREVLP 135
           G    T+T+E LP
Sbjct: 302 GFQCFTVTQEDLP 314


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.141    0.424 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,244,123
Number of extensions: 129325
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 11
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)