RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15587
         (140 letters)



>d1sbpa_ c.94.1.1 (A:) Sulphate-binding protein {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 309

 Score = 26.4 bits (57), Expect = 1.3
 Identities = 7/26 (26%), Positives = 10/26 (38%)

Query: 16  FPAAPLLTVILALVGMEAIMSEFFSD 41
           FP   L T+     G      + F+D
Sbjct: 275 FPKLKLFTIDEVFGGWAKAQKDHFAD 300


>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC,
           C-terminal domain {Haemophilus influenzae [TaxId: 727]}
          Length = 150

 Score = 25.9 bits (56), Expect = 1.4
 Identities = 7/46 (15%), Positives = 14/46 (30%)

Query: 53  WLADQYDAICCHTVITKRHWLRKPLGSSLVIAILFGDGRKRNGYGP 98
              +    +    ++ K + L    G     +I+   G    GY  
Sbjct: 93  EKGNLPKEVKTPNIVKKHYELGIQFGVRGTPSIVTSTGELIGGYLK 138


>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC,
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 156

 Score = 24.8 bits (53), Expect = 3.9
 Identities = 11/46 (23%), Positives = 15/46 (32%)

Query: 53  WLADQYDAICCHTVITKRHWLRKPLGSSLVIAILFGDGRKRNGYGP 98
                     C   I   + L   LG S   A++  +G    GY P
Sbjct: 93  MAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLSNGTLVPGYQP 138


>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I
          {Ralstonia eutropha [TaxId: 106590]}
          Length = 192

 Score = 24.6 bits (53), Expect = 4.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 39 FSDTSTAFYIILIVWLADQYDAICCHT 65
            D++  F I+  VW   Q   I  HT
Sbjct: 61 HCDSAERFSIVSFVWGPGQRTPIHDHT 87


>d1k1xa2 b.30.5.8 (A:385-659) 4-alpha-glucanotransferase, C-terminal
           domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
          Length = 275

 Score = 24.0 bits (52), Expect = 7.1
 Identities = 5/29 (17%), Positives = 11/29 (37%)

Query: 7   MLEFNVTVTFPAAPLLTVILALVGMEAIM 35
            +E +        P+ T+  +  G + I 
Sbjct: 223 RIELDKAAKVWKFPIKTLSQSEAGWDFIQ 251


>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 162

 Score = 24.0 bits (52), Expect = 7.5
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 8   LEFNVTVTFPAAPLLTVILALVGMEAIM 35
           +EF++ +T+P       +  L G  A M
Sbjct: 80  IEFDIPITYPTTAPEIAVPELDGKTAKM 107


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.424 

Gapped
Lambda     K      H
   0.267   0.0663    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 535,921
Number of extensions: 22965
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 11
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.4 bits)