BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15588
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/420 (45%), Positives = 273/420 (65%), Gaps = 37/420 (8%)
Query: 36 DFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEVESDSTMWSGLTEEASLM- 94
D+ L+ KR V++ V +W ++ ++ +D M F+++ V D+ M + E+ +
Sbjct: 251 DYALNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMAAFKEQLPELE 310
Query: 95 ----------------HHVMTHMKRYQDERAASAGQKWKLPPSGQPIIIFRVYCADHTFC 138
H V+ DERA + + P G ++F+VYC DHT+
Sbjct: 311 KIVKQISEDAKAPQKKHKVLLQQFNTGDERA-----QKRQPIRGSDEVLFKVYCIDHTYT 365
Query: 139 TLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKXXXXXXXXXXXXXEVKSTGERVVFRDND 198
T+R PV A+ +++ ++ A+KL ++ S GE+VV + ND
Sbjct: 366 TIRVPVAASVKEVISAVADKLGS---------------GEGLIIVKMNSGGEKVVLKSND 410
Query: 199 LSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDL 258
+S+ T L++NGR+F P++ D+LT + EQE T G E S+K+LA+ MT +DW+L
Sbjct: 411 VSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWEL 470
Query: 259 FWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKM 318
F +HE EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K
Sbjct: 471 FNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKF 530
Query: 319 IKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHR 378
IK+AA+CKEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHR
Sbjct: 531 IKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHR 590
Query: 379 AYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTR 438
AYR +KL+ P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++
Sbjct: 591 AYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQ 650
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/420 (45%), Positives = 274/420 (65%), Gaps = 37/420 (8%)
Query: 36 DFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEVESDSTMWSGLTEEASLM- 94
D+ L+ KR V++ V +W ++ ++ +D M F+++ V D+ M + E+ +
Sbjct: 556 DYALNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMAAFKEQLPELE 615
Query: 95 ----------------HHVMTHMKRYQDERAASAGQKWKLPPSGQPIIIFRVYCADHTFC 138
H V+ DERA QK + P G ++F+VYC DHT+
Sbjct: 616 KIVKQISEDAKAPQKKHKVLLQQFNTGDERA----QK-RQPIRGSDEVLFKVYCIDHTYT 670
Query: 139 TLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKXXXXXXXXXXXXXEVKSTGERVVFRDND 198
T+R PV A+ +++ ++ A+KL ++ S GE+VV + ND
Sbjct: 671 TIRVPVAASVKEVISAVADKLGS---------------GEGLIIVKMNSGGEKVVLKSND 715
Query: 199 LSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDL 258
+S+ T L++NGR+F P++ D+LT + EQE T G E S+K+LA+ MT +DW+L
Sbjct: 716 VSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWEL 775
Query: 259 FWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKM 318
F +HE EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K
Sbjct: 776 FNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKF 835
Query: 319 IKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHR 378
IK+AA+CKEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHR
Sbjct: 836 IKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHR 895
Query: 379 AYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTR 438
AYR +KL+ P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++
Sbjct: 896 AYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQ 955
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/420 (45%), Positives = 274/420 (65%), Gaps = 37/420 (8%)
Query: 36 DFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEVESDSTMWSGLTEEASLM- 94
D+ L+ KR V++ V +W ++ ++ +D M F+++ V D+ M + E+ +
Sbjct: 556 DYALNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMAAFKEQLPELE 615
Query: 95 ----------------HHVMTHMKRYQDERAASAGQKWKLPPSGQPIIIFRVYCADHTFC 138
H V+ DERA QK + P G ++F+VYC DHT+
Sbjct: 616 KIVKQISEDAKAPQKKHKVLLQQFNTGDERA----QK-RQPIRGSDEVLFKVYCIDHTYT 670
Query: 139 TLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKXXXXXXXXXXXXXEVKSTGERVVFRDND 198
T+R PV A+ +++ ++ A+KL ++ S GE+VV + ND
Sbjct: 671 TIRVPVAASVKEVISAVADKLGS---------------GEGLIIVKMNSGGEKVVLKSND 715
Query: 199 LSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDL 258
+S+ T L++NGR+F P++ D+LT + EQE T G E S+K+LA+ MT +DW+L
Sbjct: 716 VSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWEL 775
Query: 259 FWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKM 318
F +HE EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K
Sbjct: 776 FNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKF 835
Query: 319 IKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHR 378
IK+AA+CKEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHR
Sbjct: 836 IKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHR 895
Query: 379 AYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTR 438
AYR +KL+ P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++
Sbjct: 896 AYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQ 955
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
pdb|3QXL|B Chain B, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
Length = 271
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 108/217 (49%), Gaps = 2/217 (0%)
Query: 217 DHLDALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHR 276
D L+ +C ++Y + + FD+ + +E A +TL D +F +I EL +
Sbjct: 7 DSLEGQSCDYASKSY-DAVVFDVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKE 65
Query: 277 FQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFA 336
+ N+ F RRFN++ +WV+ EIL +L R +IL +K+A E N+++L +
Sbjct: 66 KHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMS 125
Query: 337 VLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS-PVIPFM 395
V+ L + + RL+ TW L K K T+ +L+ L+ N++ R+ + L+ P IP++
Sbjct: 126 VVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYL 185
Query: 396 PLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTL 432
+ L DL + + N ++ + LR +
Sbjct: 186 GIYLLDLIYIDSAYPASGSIMENEQRSNQMNNILRII 222
>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1
Length = 240
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 1/192 (0%)
Query: 243 SAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEI 302
SA E+A +TL D +F SI E + + T + + FN + ++ +EI
Sbjct: 5 SALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEI 64
Query: 303 LLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKK 362
+ ++ R + K + +A C+ N NA+ + ++ A+ RL TW K+ ++K
Sbjct: 65 IRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKS 124
Query: 363 TYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVV-DGLVNFEK 421
+L+ L+ + R+++ P +P++ + L DL F +G DGLVNF K
Sbjct: 125 LLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDGLVNFSK 184
Query: 422 MHMFAQTLRTLR 433
M M + +R +R
Sbjct: 185 MRMISHIIREIR 196
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 237 FDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQY 296
FDL T E+A +TL + DL+ ++ ELV + + + NL +R +
Sbjct: 774 FDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTL 833
Query: 297 WVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKL 356
W I+ +L +RV ++ ++I++ +E N N + V+ +++ V RL T++++
Sbjct: 834 WFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI 893
Query: 357 PSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPLLLKDLAFTHDGNKTVV 413
PS+ KK E L S++H Y++ ++KL+S P +PF + L ++ T +GN V+
Sbjct: 894 PSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 948
Query: 414 ----DGLVNFEKMHMFAQ 427
L+NF K A+
Sbjct: 949 KRHGKELINFSKRRKVAE 966
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 237 FDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQY 296
FDL T E+A +TL + DL+ ++ ELV + + + NL +R +
Sbjct: 577 FDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTL 636
Query: 297 WVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKL 356
W I+ +L +RV ++ ++I++ +E N N + V+ +++ V RL T++++
Sbjct: 637 WFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI 696
Query: 357 PSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPLLLKDLAFTHDGNKTVV 413
PS+ KK E L S++H Y++ ++KL+S P +PF + L ++ T +GN V+
Sbjct: 697 PSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 751
Query: 414 ----DGLVNFEKMHMFAQ 427
L+NF K A+
Sbjct: 752 KRHGKELINFSKRRKVAE 769
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 237 FDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQY 296
FDL T E+A +TL + DL+ ++ ELV + + + NL +R +
Sbjct: 577 FDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTL 636
Query: 297 WVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKL 356
W I+ +L +RV ++ ++I++ +E N N + V+ +++ V RL T++++
Sbjct: 637 WFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI 696
Query: 357 PSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPLLLKDLAFTHDGNKTVV 413
PS+ KK E L S++H Y++ ++KL+S P +PF + L ++ T +GN V+
Sbjct: 697 PSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 751
Query: 414 ----DGLVNFEKMHMFAQ 427
L+NF K A+
Sbjct: 752 KRHGKELINFSKRRKVAE 769
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless
(Rem-Cdc25) In The Absence Of Ras
Length = 490
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 237 FDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQY 296
FDL T E+A +TL + DL+ ++ ELV + + + NL +R +
Sbjct: 215 FDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTL 274
Query: 297 WVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKL 356
W I+ +L +RV ++ ++I++ +E N N + V+ +++ V RL T++++
Sbjct: 275 WFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI 334
Query: 357 PSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPLLLKDLAFTHDGNKTVV 413
PS+ KK E L S++H Y++ ++KL+S P +PF + L ++ T +GN V+
Sbjct: 335 PSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 389
Query: 414 ----DGLVNFEKMHMFAQ 427
L+NF K A+
Sbjct: 390 KRHGKELINFSKRRKVAE 407
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 484
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 237 FDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQY 296
FDL T E+A +TL + DL+ ++ ELV + + + NL +R +
Sbjct: 209 FDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTL 268
Query: 297 WVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKL 356
W I+ +L +RV ++ ++I++ +E N N + V+ +++ V RL T++++
Sbjct: 269 WFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI 328
Query: 357 PSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPLLLKDLAFTHDGNKTVV 413
PS+ KK E L S++H Y++ ++KL+S P +PF + L ++ T +GN V+
Sbjct: 329 PSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 383
Query: 414 ----DGLVNFEKMHMFAQ 427
L+NF K A+
Sbjct: 384 KRHGKELINFSKRRKVAE 401
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVV|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVX|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 481
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 237 FDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQY 296
FDL T E+A +TL + DL+ ++ ELV + + + NL +R +
Sbjct: 209 FDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTL 268
Query: 297 WVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKL 356
W I+ +L +RV ++ ++I++ +E N N + V+ +++ V RL T++++
Sbjct: 269 WFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI 328
Query: 357 PSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPLLLKDLAFTHDGNKTVV 413
PS+ KK E L S++H Y++ ++KL+S P +PF + L ++ T +GN V+
Sbjct: 329 PSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 383
Query: 414 ----DGLVNFEKMHMFAQ 427
L+NF K A+
Sbjct: 384 KRHGKELINFSKRRKVAE 401
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
Length = 477
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 237 FDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQY 296
FDL T E+A +TL + DL+ ++ ELV + + + NL +R +
Sbjct: 207 FDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTL 266
Query: 297 WVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKL 356
W I+ +L +RV ++ ++I++ +E N N + V+ +++ V RL T++++
Sbjct: 267 WFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI 326
Query: 357 PSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPLLLKDLAFTHDGNKTVV 413
PS+ KK E L S++H Y++ ++KL+S P +PF + L ++ T +GN V+
Sbjct: 327 PSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 381
Query: 414 ----DGLVNFEKMHMFAQ 427
L+NF K A+
Sbjct: 382 KRHGKELINFSKRRKVAE 399
>pdb|2DHZ|A Chain A, Solution Structure Of The Ra Domain In The Human Link
Guanine Nucleotide Exchange Factor Ii (Link-Gefii)
Length = 120
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 126 IIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKXXXXXXXXXXXXXEV 185
I RVY DH++ T+R ++A+ + I S EKL + + E V
Sbjct: 10 IFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVA--------V 61
Query: 186 KSTGERVVFRDNDLSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEG 234
S+GE+V+ + + + TAL +N +F +D +AL + E+ + G
Sbjct: 62 SSSGEKVLLQPTEDCVFTALGINSHLFACTRDSYEALVPLPEEIQVSPG 110
>pdb|1WGY|A Chain A, Ra Domain Of Guanine Nucleotide Exchange Factor For Rap1
Length = 104
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 19/116 (16%)
Query: 121 SGQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKL--AEQIKTSAAEKXXXXXXXX 178
SG+ I VY +H++ +++ V++ A++I AEK+ AE+ A
Sbjct: 6 SGEEIFC-HVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVA---------- 54
Query: 179 XXXXXEVKSTGERVVFRDNDLSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEG 234
+ +GE+ + NDL I +L +GRI+V KD D L +E + G
Sbjct: 55 ------ITFSGEKHELQPNDLVISKSLEASGRIYVYRKDLADTLNPFAENSGPSSG 104
>pdb|3T6G|A Chain A, Structure Of The Complex Between Nsp3 (Shep1) And P130cas
pdb|3T6G|C Chain C, Structure Of The Complex Between Nsp3 (Shep1) And P130cas
Length = 331
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Query: 287 FLRRFNEIQYWVITEILLVT-SLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVA 345
L RF+ + + +IL T S +R +L K I+LAA + FA +MG ++A
Sbjct: 99 LLERFHTMSIMLAVDILGSTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMA 158
Query: 346 -VSRLSLTWDKLPSKSKKTYTELEALIDP---SKNHRAYRQAVSKLQSP-VIPFMPLLLK 400
+SRL TW L + + E + P S N +S P V+P + LL
Sbjct: 159 QISRLEQTWVTLRQRHTEGAILYEKKLKPFLKSLNEGKEGPPLSNTTFPHVLPLITLLES 218
Query: 401 DLA 403
D A
Sbjct: 219 DSA 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,378,802
Number of Sequences: 62578
Number of extensions: 465802
Number of successful extensions: 1203
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1168
Number of HSP's gapped (non-prelim): 16
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)