Query psy15588
Match_columns 461
No_of_seqs 279 out of 1132
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 16:25:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf6_E RAP guanine nucleotide 100.0 1.6E-97 6E-102 820.5 33.0 435 2-454 211-674 (694)
2 4f7z_A RAP guanine nucleotide 100.0 4.1E-80 1.4E-84 705.5 33.8 424 3-444 517-961 (999)
3 2ije_S Guanine nucleotide-rele 100.0 3.8E-57 1.3E-61 440.0 17.3 213 242-454 4-219 (240)
4 3qxl_A RAS-specific guanine nu 100.0 1.3E-54 4.4E-59 429.2 16.9 219 235-453 24-247 (271)
5 2ii0_A SOS-1, SON of sevenless 100.0 3E-53 1E-57 451.1 20.7 216 236-453 214-435 (490)
6 3ksy_A SOS-1, SON of sevenless 100.0 8.6E-51 2.9E-55 465.8 20.1 217 235-453 772-994 (1049)
7 2dhz_A RAP guanine nucleotide 99.9 3.1E-27 1E-31 203.8 9.6 110 122-244 6-119 (120)
8 1wgy_A RAP guanine nucleotide 99.9 3.1E-27 1E-31 199.2 8.2 99 122-234 6-104 (104)
9 3t6g_A SH2 domain-containing p 99.9 8.4E-22 2.9E-26 195.4 10.6 150 238-400 44-214 (331)
10 3t6a_A Breast cancer anti-estr 99.9 5.3E-22 1.8E-26 197.0 8.5 130 238-374 43-187 (333)
11 2c5l_C Phosphoinositide-specif 97.6 0.00016 5.4E-09 62.1 7.5 86 122-219 4-110 (117)
12 1wxa_A Afadin, AF-6 protein; R 97.5 0.00023 8E-09 61.2 7.5 65 125-201 9-88 (116)
13 1wgr_A Growth factor receptor- 97.2 0.00079 2.7E-08 56.3 7.3 66 123-201 7-73 (100)
14 3hk0_A Growth factor receptor- 95.8 0.0096 3.3E-07 57.8 5.7 67 122-201 5-72 (256)
15 4gmv_A RAS-associated and plec 95.6 0.019 6.6E-07 56.4 7.1 65 124-201 30-95 (281)
16 2bye_A Phospholipase C, epsilo 95.4 0.042 1.4E-06 46.4 7.2 54 122-187 6-62 (110)
17 3ddc_B RAS association domain- 94.5 0.031 1E-06 50.4 4.3 65 129-205 80-147 (163)
18 3tca_A Amyloid beta A4 precurs 92.4 0.33 1.1E-05 46.6 8.2 63 124-199 33-96 (291)
19 3qij_A Protein 4.1; cytoskelet 91.3 0.37 1.3E-05 47.2 7.2 60 124-196 16-75 (296)
20 3ec8_A Putative uncharacterize 90.8 0.36 1.2E-05 43.5 5.9 48 127-186 37-89 (166)
21 1ef1_A Moesin; membrane, FERM 89.1 0.59 2E-05 45.2 6.5 56 126-195 2-57 (294)
22 2al6_A Focal adhesion kinase 1 87.1 0.7 2.4E-05 46.8 5.8 59 126-197 8-71 (375)
23 3au4_A Myosin-X; protein-prote 85.1 1.9 6.4E-05 45.8 8.1 53 122-186 213-265 (555)
24 1h4r_A Merlin; FERM, neurofibr 84.9 1.7 5.7E-05 42.5 7.1 60 122-196 19-78 (314)
25 3ivf_A Talin-1; FERM domain, c 84.5 1.5 5.2E-05 44.0 6.7 51 123-186 83-133 (371)
26 1lfd_A Ralgds; RAL, effector i 82.4 4.7 0.00016 32.5 7.3 61 126-198 4-68 (87)
27 1rax_A Protein (RA-domain of R 81.7 7.6 0.00026 32.8 8.7 66 121-198 24-93 (115)
28 2i1j_A Moesin; FERM, coiled-co 79.8 2.5 8.7E-05 45.3 6.6 58 125-196 4-61 (575)
29 3pvl_A Myosin VIIA isoform 1; 79.6 3.4 0.00012 45.0 7.6 51 123-186 261-311 (655)
30 2kc2_A Talin-1, F1; FERM, adhe 78.3 4.8 0.00016 34.8 6.7 46 127-185 13-58 (128)
31 3kh0_A Ralgds, ralgef, RAL gua 77.8 11 0.00039 32.7 8.8 73 120-205 20-96 (140)
32 1rlf_A RLF, RLF-RBD; signal tr 74.6 6.3 0.00022 31.9 5.9 65 123-199 3-72 (90)
33 1ef5_A RGL; RAS-binding domain 65.8 11 0.00039 31.1 5.7 66 122-199 15-84 (103)
34 4eku_A Protein-tyrosine kinase 64.3 9 0.00031 39.0 6.0 62 122-195 18-89 (392)
35 2j0j_A Focal adhesion kinase 1 62.5 8.8 0.0003 41.3 5.9 58 126-196 8-70 (656)
36 2uwq_A Apoptosis-stimulating o 61.7 10 0.00034 30.5 4.6 56 126-199 7-64 (86)
37 4dxa_B KREV interaction trappe 61.1 8.2 0.00028 37.8 4.9 50 125-190 5-57 (322)
38 2cs4_A Protein C12ORF2; GTP bi 56.5 12 0.00041 30.6 4.3 43 141-199 23-65 (95)
39 2v1y_A Phosphatidylinositol-4, 49.8 79 0.0027 26.3 8.4 67 124-199 18-87 (108)
40 1wxm_A A-RAF proto-oncogene se 48.7 62 0.0021 25.9 7.2 31 127-157 9-39 (86)
41 2l05_A Serine/threonine-protei 47.4 39 0.0013 27.5 5.9 32 126-157 18-49 (95)
42 2al3_A TUG long isoform; TUG U 42.6 32 0.0011 27.8 4.7 41 128-182 12-52 (90)
43 3ny5_A Serine/threonine-protei 41.9 51 0.0017 26.9 5.8 33 125-157 13-45 (96)
44 1oey_A P67-PHOX, neutrophil cy 34.0 76 0.0026 25.1 5.6 67 126-211 6-76 (83)
45 1c1y_B Proto-onkogene serine/t 31.8 56 0.0019 25.6 4.3 31 127-157 3-33 (77)
46 1wju_A NEDD8 ultimate buster-1 29.0 1.1E+02 0.0036 25.0 5.8 48 122-183 12-63 (100)
47 1rrb_A RAF-1 RBD, RAF proto-on 24.2 2.4E+02 0.0083 23.3 7.1 31 127-157 20-50 (107)
48 2kj6_A Tubulin folding cofacto 22.2 2.8E+02 0.0096 22.0 7.2 49 121-183 10-60 (97)
49 2daf_A FLJ35834 protein; hypot 21.8 3.6E+02 0.012 22.6 8.1 59 122-199 12-71 (118)
50 1wjn_A Tubulin-folding protein 21.6 2.9E+02 0.0098 21.5 7.4 44 126-183 10-56 (97)
51 2io0_B Small ubiquitin-related 20.3 2.4E+02 0.0083 22.1 6.3 53 123-192 3-55 (91)
No 1
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=100.00 E-value=1.6e-97 Score=820.50 Aligned_cols=435 Identities=45% Similarity=0.814 Sum_probs=397.6
Q ss_pred hhhhh-hhhhHhHH---Hhhhhh--cCcccCCCCCCCCchhhhhhhhhhHHHHHHHHHHhhhcccccChhhhhHHHHHHH
Q psy15588 2 DFVRD-ATYHIVVL---KLCSAK--SFQCTFHMDSSNHDKDFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLAS 75 (461)
Q Consensus 2 ~~~~~-~lth~vfm---~lc~~l--~y~~~~~~~~~~e~~~~~l~~KrrVl~lv~~W~~~~~~~~~~d~~~~~fl~~l~~ 75 (461)
.|+.| +|||++|| ++|++| +|++++++|+++|+.+|++++|+||+++|++|+++|++.|++||++++|||+||+
T Consensus 211 ~~~~dflLTh~~fm~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~w~~~~~~~~~~~~~~~~~l~~~~~ 290 (694)
T 3cf6_E 211 SVLNDFVMMHCVFMPNTQLCPALVAHYHAQPSQGTEQERMDYALNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYV 290 (694)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGCHHHHHHHHHHHH
T ss_pred hhhhhhhheehhhcCcHHHHHHHHHHhccCccCCccccchhhhhhHHHHHHHHHHHHHHhcCCccccChHHHHHHHHHHH
Confidence 47888 99999999 999999 7788899999989999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhhhhhHHHHHHHHHHHHhhhcchhhhhcccccccCCCC---------------CCCcEEEEEeecCCCeeeE
Q psy15588 76 EVESDSTMWSGLTEEASLMHHVMTHMKRYQDERAASAGQKWKLPPS---------------GQPIIIFRVYCADHTFCTL 140 (461)
Q Consensus 76 ~v~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~vy~~d~~~~~~ 140 (461)
.|++|.+++++|++++.+++++++ ++..++.+|+.+.+.++++ ++||++||||++||||+|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~d~~~~~~ 367 (694)
T 3cf6_E 291 SVSDDARMMAAFKEQLPELEKIVK---QISEDAKAPQKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDHTYTTI 367 (694)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHC---------------------------------CCCCCTTSEEEEEEECTTSCEEEE
T ss_pred HHHhhHHhhHHHHHHHHHHHHHHh---hcCCcccCccccccccccccCCCCcccccCCCCCCCCceeEEEEccCCceeEE
Confidence 999999999999999999998875 4667777777777766533 8899999999999999999
Q ss_pred eecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeecCcceecCCCCCCcccccccCcccccccCCccc
Q psy15588 141 RFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDLSIPTALSLNGRIFVSPKDHLD 220 (461)
Q Consensus 141 ~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~~e~~~~~~~~~~~~~~l~ln~r~~~~~~~~~~ 220 (461)
++++++||+|||+.|++ |+| ..++++||+|+++||+++++|+|.++++++++|||+|++++++.+
T Consensus 368 ~~~~~~~~~~~~~~~~~------------~~~---~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 432 (694)
T 3cf6_E 368 RVPVAASVKEVISAVAD------------KLG---SGEGLIIVKMNSGGEKVVLKSNDVSVFTTLTINGRLFACPREQFD 432 (694)
T ss_dssp EEETTCBHHHHHHHHHH------------HHT---CCSCEEEEEECTTSCEEECCTTCBCCGGGSCTTCEEEEEEGGGGG
T ss_pred EeeccccHHHHHHHHHH------------HhC---CcccceEEEEeecCcccccCccccccccccccccceecccccccc
Confidence 99999999999999999 996 467899999999999999999999999999999999999999999
Q ss_pred cccCCccccccccCCccccCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCCCCCcCccHHHHHHHhHHHHHHHHH
Q psy15588 221 ALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVIT 300 (461)
Q Consensus 221 ~l~pl~~~~~~~~~~~~~L~~l~~~elA~QLTl~d~~LF~~I~~~Ell~~~~~k~~~~~~tpnL~~~~~~fN~ls~WV~t 300 (461)
+++|+|++.+|..+...+|.+++|.+||+|||++|+++|++|+|.|++++.|++.+....+||+..++++||.+++||++
T Consensus 433 ~l~p~~~~~~p~~~~~~~l~~~~~~elA~QLTl~d~~lf~~I~~~E~l~~~~~~~~~~~~~pni~~~i~~fN~ls~wV~~ 512 (694)
T 3cf6_E 433 SLTPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVT 512 (694)
T ss_dssp GCCCCGGGSCCSSCCHHHHTTSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHCGGGTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCChhhcCCCCCCCCchhcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999998878899999999999999999999999999999999999877667899999999999999999999
Q ss_pred HHhccCChhHHHHHHHHHHHHHHHHHhcCCchhHHHHHhcccccccccchHhhccCChhhHHHHHHHHhccCCCCcHHHH
Q psy15588 301 EILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAY 380 (461)
Q Consensus 301 eIL~~~~~~~Ra~li~kFIkIA~~c~~l~Nfns~~AI~~gL~~~aV~RL~~TWe~l~~k~kk~~~~L~~L~d~s~N~~~Y 380 (461)
+||.++++++|+++|++||+||.+|+++|||||++||++||++++|+||++||+.||+++++.|++|+.+++|++||++|
T Consensus 513 ~Il~~~~~~~Ra~~i~~fI~iA~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~N~~~y 592 (694)
T 3cf6_E 513 EVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAY 592 (694)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCcchhhhHHHHHHCCHHHHHHHHHHHHHhCccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCccccccchhhhhhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhhhcCCCCch--------hhhhcccc
Q psy15588 381 RQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLGRPL--------ARQRFVVP 452 (461)
Q Consensus 381 R~~l~~~~~P~IPflgl~LkDLtfi~egn~t~~dgLINf~K~r~ia~~i~~i~~~q~~~y~~~~--------~~Q~~l~~ 452 (461)
|.+++++++|||||+|+||+||+|++||||++++|+|||+|+|+++++|+.+++||+.||++.+ .+|.|+.+
T Consensus 593 R~~l~~~~~p~IPflg~~L~DL~fi~egn~~~~~~lINf~K~r~i~~ii~~i~~~q~~~y~~~~~~~~~~~~~i~~~l~~ 672 (694)
T 3cf6_E 593 RLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSYVRQ 672 (694)
T ss_dssp HHHHHHSCSSCBCCHHHHHHHHHHHHHHSCSEETTEEEHHHHHHHHHHHHHHHHHTSSCCC---------CHHHHHHHTS
T ss_pred HHHHHhcCCCCcccHHHHHHHHHHHHcCCCchhccCcCHHHHHHHHHHHHHHHHHhhCCCCcCccccccchHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998864 47788866
Q ss_pred CC
Q psy15588 453 QE 454 (461)
Q Consensus 453 ~~ 454 (461)
..
T Consensus 673 l~ 674 (694)
T 3cf6_E 673 LN 674 (694)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 2
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=100.00 E-value=4.1e-80 Score=705.51 Aligned_cols=424 Identities=46% Similarity=0.831 Sum_probs=397.3
Q ss_pred hhhh-hhhhHhHH---Hhhhhh--cCcccCCCCCCCCchhhhhhhhhhHHHHHHHHHHhhhcccccChhhhhHHHHHHHH
Q psy15588 3 FVRD-ATYHIVVL---KLCSAK--SFQCTFHMDSSNHDKDFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASE 76 (461)
Q Consensus 3 ~~~~-~lth~vfm---~lc~~l--~y~~~~~~~~~~e~~~~~l~~KrrVl~lv~~W~~~~~~~~~~d~~~~~fl~~l~~~ 76 (461)
||+| ||||..|| +||.+| .|+..++.|.+.++.++....|+||++++.+|+..|.+.|.+||.+..||++|+..
T Consensus 517 f~~~FLlTyr~F~t~~~ll~~Li~r~~~~~~~~~~~~~~~~~~~~~~rv~~vl~~Wv~~~~~df~~d~~~~~~l~~f~~~ 596 (999)
T 4f7z_A 517 VLNDFVMMHCVFMPNTQLCPALVAHYHAQPSQGTEQERMDYALNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVS 596 (999)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCcHHHHHHHHHHHcCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhCCchhccCHHHHHHHHHHHHH
Confidence 9999 99999999 999999 88888888888888899999999999999999999999999999999999999999
Q ss_pred HhhcchhhhhhhHHHHHHHHHHHHhhhcchhhhhcccccccC---------------CCCCCCcEEEEEeecCCCeeeEe
Q psy15588 77 VESDSTMWSGLTEEASLMHHVMTHMKRYQDERAASAGQKWKL---------------PPSGQPIIIFRVYCADHTFCTLR 141 (461)
Q Consensus 77 v~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------------~~~~~~~~~~~vy~~d~~~~~~~ 141 (461)
+.+|....+++++.+..++++.+.. ..+...++++.+.+ +..+.|+++++||++||+|.+++
T Consensus 597 ~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 673 (999)
T 4f7z_A 597 VSDDARMMAAFKEQLPELEKIVKQI---SEDAKAPQKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDHTYTTIR 673 (999)
T ss_dssp HHHCSSCCHHHHTHHHHHHHHHHHT---TSCSCCCCEECC-----------CCCCCCCCCTTSEEEEEEECTTSCEEEEE
T ss_pred HhhchhhHHHHHHHHHHHHHHhhhc---cccccccccccchhhhccccccccccccCCCCCccchhhhcccccccccccc
Confidence 9999999999999999999987653 33332333332222 22378999999999999999999
Q ss_pred ecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeecCcceecCCCCCCcccccccCcccccccCCcccc
Q psy15588 142 FPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDLSIPTALSLNGRIFVSPKDHLDA 221 (461)
Q Consensus 142 ~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~~e~~~~~~~~~~~~~~l~ln~r~~~~~~~~~~~ 221 (461)
+++++|+++++..+++ ++ +..+++.+++++++|++..+++++.++++++++|+|+|+++++..+.
T Consensus 674 ~~~~~~~~~~~~~~~~------------~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (999)
T 4f7z_A 674 VPVAASVKEVISAVAD------------KL---GSGEGLIIVKMNSGGEKVVLKSNDVSVFTTLTINGRLFACPREQFDS 738 (999)
T ss_dssp EETTCBHHHHHHHHHH------------HH---CCCSCEEEEEECTTCCEEECCTTCBCCSTTSCTTCEEEEEEGGGSSS
T ss_pred CCccccHHHHHHhhhh------------hc---cCCCcceeeccccCCccccCCcccccccccccccccccccccccccc
Confidence 9999999999999999 88 56788999999999999999999999999999999999999999999
Q ss_pred ccCCccccccccCCccccCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCCCCCcCccHHHHHHHhHHHHHHHHHH
Q psy15588 222 LTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITE 301 (461)
Q Consensus 222 l~pl~~~~~~~~~~~~~L~~l~~~elA~QLTl~d~~LF~~I~~~Ell~~~~~k~~~~~~tpnL~~~~~~fN~ls~WV~te 301 (461)
++|+|++..+..+....|++++|.|||+|||++|+++|++|+|.|++++.|++.+....+|||.+++++||.+++||+++
T Consensus 739 ~~p~~~~~~~~~~~~~~~~~~~~~e~A~qlt~~~~~~f~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~wv~~~ 818 (999)
T 4f7z_A 739 LTPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTE 818 (999)
T ss_dssp CCCCTTTTCCSSCCHHHHTTSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHCHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhcccccccccchhcCCHHHHHHHHHHHHHHHHcCCCHHHHHHhHhhcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888889999999999999999999999999999999999988766678999999999999999999999
Q ss_pred HhccCChhHHHHHHHHHHHHHHHHHhcCCchhHHHHHhcccccccccchHhhccCChhhHHHHHHHHhccCCCCcHHHHH
Q psy15588 302 ILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYR 381 (461)
Q Consensus 302 IL~~~~~~~Ra~li~kFIkIA~~c~~l~Nfns~~AI~~gL~~~aV~RL~~TWe~l~~k~kk~~~~L~~L~d~s~N~~~YR 381 (461)
||.++++++||++|++||+||.+|+++|||||+|||++||++++|+||++||+.||+++++.|++|+.|++|++||++||
T Consensus 819 il~~~~~~~R~~~~~~~i~ia~~~~~l~Nf~~~~ai~~~l~~~~i~RL~~tw~~~~~~~~~~~~~l~~l~~~~~n~~~yr 898 (999)
T 4f7z_A 819 VCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYR 898 (999)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHTTSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcCCchhhhHHHHHHHCCHHHHHHHHHHHHHcCCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCccccccchhhhhhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhhhcCCCCch
Q psy15588 382 QAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLGRPL 444 (461)
Q Consensus 382 ~~l~~~~~P~IPflgl~LkDLtfi~egn~t~~dgLINf~K~r~ia~~i~~i~~~q~~~y~~~~ 444 (461)
.++++++||||||+|+||+||||+|||||++++|+|||+|+++++++|+.|++||+.||++.+
T Consensus 899 ~~l~~~~~p~iP~~g~~l~dl~~~~~gn~~~~~~linf~k~~~~~~~i~~i~~~q~~~y~~~~ 961 (999)
T 4f7z_A 899 LTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDA 961 (999)
T ss_dssp HHHHTCCSSCBCCHHHHHHHHHHHHHTSCSBSSSSEEHHHHHHHHHHHHHHHHHTSSCCCCSS
T ss_pred HHHHhCCCCeeceehHHHHHHHHHhccCCCCCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999998854
No 3
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=100.00 E-value=3.8e-57 Score=439.96 Aligned_cols=213 Identities=24% Similarity=0.406 Sum_probs=204.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCCCCCcCccHHHHHHHhHHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q psy15588 242 FSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKL 321 (461)
Q Consensus 242 l~~~elA~QLTl~d~~LF~~I~~~Ell~~~~~k~~~~~~tpnL~~~~~~fN~ls~WV~teIL~~~~~~~Ra~li~kFIkI 321 (461)
++|.+||+|||++|+++|++|+|.|+++..|++.+....+||+..++++||.++.||+++||.++++++|+++|++||+|
T Consensus 4 ~~p~eiA~QLTl~d~~lf~~I~~~E~l~~~w~~~~~~~~~p~i~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI~i 83 (240)
T 2ije_S 4 GSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWVAV 83 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGGGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHhhhHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999998876555799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHhcccccccccchHhhccCChhhHHHHHHHHhccCCCCcHHHHHHHHhhCCCCccccccchhhh
Q psy15588 322 AAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKD 401 (461)
Q Consensus 322 A~~c~~l~Nfns~~AI~~gL~~~aV~RL~~TWe~l~~k~kk~~~~L~~L~d~s~N~~~YR~~l~~~~~P~IPflgl~LkD 401 (461)
|.+|+++|||||++||++||++++|+||++||+.+|+++++.|++|+.+++|++||++||.+++++++|||||+|++|+|
T Consensus 84 A~~~~~l~Nfns~~aI~~gL~~~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L~D 163 (240)
T 2ije_S 84 ADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTD 163 (240)
T ss_dssp HHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCCSSCBCCHHHHHHH
T ss_pred HHHHHhcCCHhHHHHHHHHhccchhhhHHHHHHHhhHHHHHHHHHHHHHHCccchHHHHHHHHHhcCCCccCccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCC-CCcccHHHHHHHHHHHHHHHHhhhcCCCCch--hhhhccccCC
Q psy15588 402 LAFTHDGNKTVV-DGLVNFEKMHMFAQTLRTLRYCRTRHLGRPL--ARQRFVVPQE 454 (461)
Q Consensus 402 Ltfi~egn~t~~-dgLINf~K~r~ia~~i~~i~~~q~~~y~~~~--~~Q~~l~~~~ 454 (461)
|+|++||||++. +|+|||+|+|+++++|+.+++||+.||++.+ .+|.|+....
T Consensus 164 L~~i~egnp~~~~~~lINf~K~~~~~~ii~~i~~~q~~~y~~~~~~~i~~~l~~~~ 219 (240)
T 2ije_S 164 LVFIEEGTPNYTEDGLVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDES 219 (240)
T ss_dssp HHHHHHHSCSBCTTSCBCHHHHHHHHHHHHHHHHHHHSCCCCCCCHHHHHHHHCCT
T ss_pred HHHHHhcCCCCCCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHhCc
Confidence 999999999997 8999999999999999999999999998854 6888886654
No 4
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}
Probab=100.00 E-value=1.3e-54 Score=429.23 Aligned_cols=219 Identities=26% Similarity=0.437 Sum_probs=205.9
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCCCCCcCccHHHHHHHhHHHHHHHHHHHhccCChhHHHHH
Q psy15588 235 MDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQI 314 (461)
Q Consensus 235 ~~~~L~~l~~~elA~QLTl~d~~LF~~I~~~Ell~~~~~k~~~~~~tpnL~~~~~~fN~ls~WV~teIL~~~~~~~Ra~l 314 (461)
..+++++++|.|||+|||++|+++|++|+|.|+++..|++.+....+||+.+++++||.+++||+++||.++++++|+++
T Consensus 24 ~~fdil~~~p~elA~QLTlid~~lF~~I~p~E~l~~~w~k~~~~~~~pnl~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~ 103 (271)
T 3qxl_A 24 VVFDVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEI 103 (271)
T ss_dssp --CCGGGSCHHHHHHHHHHHHHHHHHTCCHHHHHHTCTTSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHhHhccCCcCCCCCcHHHHHHHHhHHHHHHHHHhcccCCHHHHHHH
Confidence 35788999999999999999999999999999999999876544579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhcccccccccchHhhccCChhhHHHHHHHHhccCCCCcHHHHHHHHhhCC-CCccc
Q psy15588 315 LRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ-SPVIP 393 (461)
Q Consensus 315 i~kFIkIA~~c~~l~Nfns~~AI~~gL~~~aV~RL~~TWe~l~~k~kk~~~~L~~L~d~s~N~~~YR~~l~~~~-~P~IP 393 (461)
|++||+||.+|+++|||||++||++||++++|+||++||+.||+++++.|++|+.+++|++||++||.+++++. +||||
T Consensus 104 i~kfI~IA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~l~~k~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~~p~IP 183 (271)
T 3qxl_A 104 LSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIP 183 (271)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCCBC
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHcccchHHHHHHHHHHCCHHHHHHHHHHHHHcCcchhHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999886 99999
Q ss_pred cccchhhhhhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhhhc-CCC---CchhhhhccccC
Q psy15588 394 FMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTR-HLG---RPLARQRFVVPQ 453 (461)
Q Consensus 394 flgl~LkDLtfi~egn~t~~dgLINf~K~r~ia~~i~~i~~~q~~-~y~---~~~~~Q~~l~~~ 453 (461)
|+|++|+||||+++|||++.++++||.|+++++++++.|+.||+. ||+ +.+.+|.||...
T Consensus 184 flg~~L~DL~fi~~g~p~~~~~l~n~~k~~~~~~i~~~I~~~Q~~~~Y~~~~~~~~iq~~l~~~ 247 (271)
T 3qxl_A 184 YLGIYLLDLIYIDSAYPASGSIMENEQRSNQMNNILRIIADLQVSCSYDHLTTLPHVQKYLKSV 247 (271)
T ss_dssp CHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCCTTCCCCHHHHHHHHTS
T ss_pred chHHHHHHHHHHHhcCCCcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHh
Confidence 999999999999999999855578899999999999999999998 886 467899998764
No 5
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=100.00 E-value=3e-53 Score=451.06 Aligned_cols=216 Identities=25% Similarity=0.428 Sum_probs=203.6
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCCCCCcCccHHHHHHHhHHHHHHHHHHHhccCChhHHHHHH
Q psy15588 236 DFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQIL 315 (461)
Q Consensus 236 ~~~L~~l~~~elA~QLTl~d~~LF~~I~~~Ell~~~~~k~~~~~~tpnL~~~~~~fN~ls~WV~teIL~~~~~~~Ra~li 315 (461)
.+.|++++|.+||+|||++|+++|++|+|.|+++..|++.+....+||+..++++||.+++||+++||.++++++||++|
T Consensus 214 ~~~ll~~~p~elA~QLTlid~~lf~~I~~~E~l~~~w~~~~~~~~~pnl~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i 293 (490)
T 2ii0_A 214 TFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVV 293 (490)
T ss_dssp GCCTTTSCHHHHHHHHHHHHHHHHHHCCGGGTGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred cchhhccCHHHHHHHHHHHHHHHHHCCCHHHHHHHHhcCCCcCCCCccHHHHHHHHhHHHHHHHHHhcCCCCHHHHHHHH
Confidence 35788999999999999999999999999999999998766555789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhcccccccccchHhhccCChhhHHHHHHHHhccCCCCcHHHHHHHHhhCCCCccccc
Q psy15588 316 RKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFM 395 (461)
Q Consensus 316 ~kFIkIA~~c~~l~Nfns~~AI~~gL~~~aV~RL~~TWe~l~~k~kk~~~~L~~L~d~s~N~~~YR~~l~~~~~P~IPfl 395 (461)
++||+||.+|+++|||||++||++||++++|+||++||+.||.+.++.|++|..+. ++||++||.+++++.+|||||+
T Consensus 294 ~kfI~iA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l~~l~--~~n~~~yR~~l~~~~~p~IPfl 371 (490)
T 2ii0_A 294 SRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELS--EDHYKKYLAKLRSINPPCVPFF 371 (490)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHHSCHHHHHHHHHHHHHH--HHHHHHHHHHHHTCCSSCBCCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhccchhhhHHHHHHHCCHHHHHHHHHHHHhc--hHHHHHHHHHHhccCCCcccCc
Confidence 99999999999999999999999999999999999999999999999999998873 5799999999999999999999
Q ss_pred cchhhhhhhhhcCCCCCCC--C--cccHHHHHHHHHHHHHHHHhhhcCCCCch--hhhhccccC
Q psy15588 396 PLLLKDLAFTHDGNKTVVD--G--LVNFEKMHMFAQTLRTLRYCRTRHLGRPL--ARQRFVVPQ 453 (461)
Q Consensus 396 gl~LkDLtfi~egn~t~~d--g--LINf~K~r~ia~~i~~i~~~q~~~y~~~~--~~Q~~l~~~ 453 (461)
|++|+||+|++||||++++ | +|||+|+|+++++|+.|++||+.||++.+ .+|.|+.+.
T Consensus 372 g~~L~DL~~i~egnp~~~~~~~~~lINf~K~r~~~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l 435 (490)
T 2ii0_A 372 GIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENL 435 (490)
T ss_dssp HHHHHHHHHHHHTSCSEEEETTEEEEEHHHHHHHHHHHHHHGGGSSCCCSCCCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCcccCCCCCeEEcHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHhc
Confidence 9999999999999999984 2 99999999999999999999999999864 788998753
No 6
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=100.00 E-value=8.6e-51 Score=465.85 Aligned_cols=217 Identities=24% Similarity=0.409 Sum_probs=205.7
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCCCCCcCccHHHHHHHhHHHHHHHHHHHhccCChhHHHHH
Q psy15588 235 MDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQI 314 (461)
Q Consensus 235 ~~~~L~~l~~~elA~QLTl~d~~LF~~I~~~Ell~~~~~k~~~~~~tpnL~~~~~~fN~ls~WV~teIL~~~~~~~Ra~l 314 (461)
..++|++++|.+||+|||++|+++|++|+|.|+++..|++.+....+||+..++++||.+++||+++||.++++++|+++
T Consensus 772 ~~~~ll~~~~~elA~QLTlid~~lf~~I~p~E~l~~~w~~~~~~~~~pn~~~~i~~~n~~s~wV~~~Il~~~~~~~Ra~~ 851 (1049)
T 3ksy_A 772 ETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAV 851 (1049)
T ss_dssp TTCCTTTSCHHHHHHHHHHHHHHHHHHCCGGGGSSSTTTSSCHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CCcccccCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 35688999999999999999999999999999999999887655679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhcccccccccchHhhccCChhhHHHHHHHHhccCCCCcHHHHHHHHhhCCCCcccc
Q psy15588 315 LRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPF 394 (461)
Q Consensus 315 i~kFIkIA~~c~~l~Nfns~~AI~~gL~~~aV~RL~~TWe~l~~k~kk~~~~L~~L~d~s~N~~~YR~~l~~~~~P~IPf 394 (461)
|++||+||.+|+++|||||++||++||++++|+||++||+.||.+.++.|++|+.+ +++||++||.+++++.+|||||
T Consensus 852 i~~fI~iA~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l~~l--~~~n~~~yR~~l~~~~~p~IPf 929 (1049)
T 3ksy_A 852 VSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPF 929 (1049)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHSHHHHTCTTTTTSSCHHHHHHHHHHHTT--THHHHHHHHHHHTTCCSSCCCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHcccchhHhHHHHHHHCCHHHHHHHHHHHhh--chHHHHHHHHHHhhCCCCccce
Confidence 99999999999999999999999999999999999999999999999999999998 5689999999999999999999
Q ss_pred ccchhhhhhhhhcCCCCCC----CCcccHHHHHHHHHHHHHHHHhhhcCCCCc--hhhhhccccC
Q psy15588 395 MPLLLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQTLRTLRYCRTRHLGRP--LARQRFVVPQ 453 (461)
Q Consensus 395 lgl~LkDLtfi~egn~t~~----dgLINf~K~r~ia~~i~~i~~~q~~~y~~~--~~~Q~~l~~~ 453 (461)
+|+||+||||+++|||+++ +|+|||+|+++++++|+.|++||+.||++. +.+|.||.+.
T Consensus 930 lg~~L~DL~~i~eg~p~~~~~~~~~lINf~K~~~~~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l 994 (1049)
T 3ksy_A 930 FGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENL 994 (1049)
T ss_dssp THHHHHHHHHHHHHSCSEEEETTEEEEEHHHHHHHHHHHHHHHTTTSSCCCCCCCHHHHHHHHSC
T ss_pred eHHHHHHHHHHHccCCccccCCCCCeEcHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHhc
Confidence 9999999999999999997 379999999999999999999999999875 5788998763
No 7
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=99.94 E-value=3.1e-27 Score=203.76 Aligned_cols=110 Identities=30% Similarity=0.464 Sum_probs=101.0
Q ss_pred CCCcEEEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcC----CCCCeEEEEeeecCcceecCCC
Q psy15588 122 GQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLV----SPSDLLLVEVKSTGERVVFRDN 197 (461)
Q Consensus 122 ~~~~~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Lv~v~~~~e~~~~~~~ 197 (461)
++|+++|+||++||||+++++|+++||+||+.+|++ |+++.. .++++.||+|+++|||++++|+
T Consensus 6 ~~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~------------kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~ 73 (120)
T 2dhz_A 6 SGDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTE------------KLQYSEEPAGREDSLILVAVSSSGEKVLLQPT 73 (120)
T ss_dssp SCCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHH------------HSTTCSSTTSCCSCCEEEEEETTCCCEECCTT
T ss_pred CCCcEEEEEEeccCceEEEEEeccccHHHHHHHHHH------------HhccccccccccCceEEEEEccCCcEeecCCc
Confidence 679999999999999999999999999999999999 998643 2348999999999999999999
Q ss_pred CCCcccccccCcccccccCCccccccCCccccccccCCccccCCCCH
Q psy15588 198 DLSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEGMDFDLETFSA 244 (461)
Q Consensus 198 ~~~~~~~l~ln~r~~~~~~~~~~~l~pl~~~~~~~~~~~~~L~~l~~ 244 (461)
|.+++++|++|||+|+|++|++++|+|+|+|++|+.++. .++.+++
T Consensus 74 d~sv~tsL~~NgRLfvc~kd~~d~LtPLpEq~~p~~g~~-~~l~~~t 119 (120)
T 2dhz_A 74 EDCVFTALGINSHLFACTRDSYEALVPLPEEIQVSPGDT-EISGPSS 119 (120)
T ss_dssp CSCHHHHSCSSEEEEEECTTTTTTCCCCCCSSSSCSSCC-CCCCSCC
T ss_pred ceEEEeeccccceEEEeehHhcccccCCccccCCCcCcc-eeecccC
Confidence 999999999999999999999999999999999999874 5665653
No 8
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=99.94 E-value=3.1e-27 Score=199.16 Aligned_cols=99 Identities=31% Similarity=0.494 Sum_probs=93.7
Q ss_pred CCCcEEEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeecCcceecCCCCCCc
Q psy15588 122 GQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDLSI 201 (461)
Q Consensus 122 ~~~~~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~~e~~~~~~~~~~~ 201 (461)
.+|+++|+||++||||+++++|+++||+||+.++++ |+++ +.+++.||+|+++|||++++|+|.++
T Consensus 6 ~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~------------kl~~--~~e~l~Lv~v~ssGEk~~lqp~d~si 71 (104)
T 1wgy_A 6 SGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAE------------KIQY--AEEDLALVAITFSGEKHELQPNDLVI 71 (104)
T ss_dssp CSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHH------------HHTS--CGGGEEEEEECSSCCCCBCCTTSBSS
T ss_pred CCCceEEEEEeccCceEEEEEeccchHHHHHHHHHH------------HhcC--CccceEEEEEccCCcEeecCCcceEE
Confidence 578999999999999999999999999999999999 9963 34599999999999999999999999
Q ss_pred ccccccCcccccccCCccccccCCccccccccC
Q psy15588 202 PTALSLNGRIFVSPKDHLDALTCISEQETYTEG 234 (461)
Q Consensus 202 ~~~l~ln~r~~~~~~~~~~~l~pl~~~~~~~~~ 234 (461)
+|+|++|||+|+|++|+.|+|+|+|+|++|+.+
T Consensus 72 ~tsL~~NgRLfvc~kd~~d~LtPlpeq~gp~~~ 104 (104)
T 1wgy_A 72 SKSLEASGRIYVYRKDLADTLNPFAENSGPSSG 104 (104)
T ss_dssp CCSSCSSCEEEEEECCSSSCCCCCCCCCCCCCC
T ss_pred EeeccccceEEEeehHhcccccCCccccCCCCC
Confidence 999999999999999999999999999999764
No 9
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=99.86 E-value=8.4e-22 Score=195.45 Aligned_cols=150 Identities=26% Similarity=0.318 Sum_probs=125.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCC-------------hhhhhhhhccCCCCCCcCccHHHHHHHhHHHHHHHHHHHhc
Q psy15588 238 DLETFSAKELAFHMTLFDWDLFWSIH-------------EYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILL 304 (461)
Q Consensus 238 ~L~~l~~~elA~QLTl~d~~LF~~I~-------------~~Ell~~~~~k~~~~~~tpnL~~~~~~fN~ls~WV~teIL~ 304 (461)
.|.+.+|.++|+|||.+|+++|+... .-|++...+|.+ -. ..+++|+|.+++||+++||.
T Consensus 44 lL~~~~~~~lA~hlt~~D~~l~~~l~vt~~~~~~mgv~sglELitlPhG~q------lR-ldlleR~~~l~~~va~~IL~ 116 (331)
T 3t6g_A 44 LLAEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQ------LR-LDLLERFHTMSIMLAVDILG 116 (331)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHTTSSSCCHHHHHHHSSSCHHHHTTSGGGHH------HH-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccChHHHHHHHHHHHHHHHHhcCCCHHHHhhhcCCCcceeEEecccch------hh-HHHHHHhcchHHHHHHHHhc
Confidence 57899999999999999999998754 455555444321 11 36899999999999999999
Q ss_pred cC-ChhHHHHHHHHHHHHHHHHH-hcCCchhHHHHHhcccccccccchHhhccCChhhHHHHHHHHhccCCCCcHHHHHH
Q psy15588 305 VT-SLNKRVQILRKMIKLAAYCK-EYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQ 382 (461)
Q Consensus 305 ~~-~~~~Ra~li~kFIkIA~~c~-~l~Nfns~~AI~~gL~~~aV~RL~~TWe~l~~k~kk~~~~L~~L~d~s~N~~~YR~ 382 (461)
|. +..+|+.+++|||+||.+|+ .+||++|++||+.||++++|+||++||+.++.++.+.+-.+++.++|. ..
T Consensus 117 c~g~~~~Ra~lL~k~IqiA~~Lk~~~gnL~sF~AIm~aL~~pqVsRLe~TW~~Lr~k~te~Ai~yEk~LkP~------~k 190 (331)
T 3t6g_A 117 STGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLEQTWVTLRQRHTEGAILYEKKLKPF------LK 190 (331)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHTSCBHHHHHHHHHHHTSHHHHTCHHHHHHHHHHCHHHHHHHHHTHHHH------HH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhhccHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHH------HH
Confidence 96 89999999999999999999 999999999999999999999999999999999999998888888773 23
Q ss_pred HHhhCC------CCccccccchhh
Q psy15588 383 AVSKLQ------SPVIPFMPLLLK 400 (461)
Q Consensus 383 ~l~~~~------~P~IPflgl~Lk 400 (461)
.+.... ..|||++-.++.
T Consensus 191 ~lneg~~~~~~~~~~~Phl~Pl~~ 214 (331)
T 3t6g_A 191 SLNEGKEGPPLSNTTFPHVLPLIT 214 (331)
T ss_dssp HHHTTCCCSCGGGCSBCCCHHHHH
T ss_pred HHhCCCCCCCCCCCccchHHHHHH
Confidence 343332 247888766543
No 10
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens}
Probab=99.85 E-value=5.3e-22 Score=197.00 Aligned_cols=130 Identities=22% Similarity=0.279 Sum_probs=113.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCC-------------hhhhhhhhccCCCCCCcCccHHHHHHHhHHHHHHHHHHHhc
Q psy15588 238 DLETFSAKELAFHMTLFDWDLFWSIH-------------EYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILL 304 (461)
Q Consensus 238 ~L~~l~~~elA~QLTl~d~~LF~~I~-------------~~Ell~~~~~k~~~~~~tpnL~~~~~~fN~ls~WV~teIL~ 304 (461)
.|.+.+|.++|+|||.+|+++++... .-|++...+|.+ -. ..+++|||.+++||+++||.
T Consensus 43 lL~~~~~~~lA~hlt~~D~~lar~l~~t~~~~~~mgv~sglELitlPhG~q------lR-ldlleR~~~l~~wva~~IL~ 115 (333)
T 3t6a_A 43 LFTNNDPKVIAQHVLSMDCRVARILGVSEEMRRNMGVSSGLELITLPHGHQ------LR-LDIIERHNTMAIGIAVDILG 115 (333)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTTSSCCCHHHHHHHSSSCHHHHTTSGGGHH------HH-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccChHHHHHHHHHHHHHHHHhcCCcHHHHhhhcCCCcceEEEeeccch------hh-hHHHHHhcccHHHHHHHHHh
Confidence 57889999999999999999987744 445655444322 12 35899999999999999999
Q ss_pred cCC-hhHHHHHHHHHHHHHHHHH-hcCCchhHHHHHhcccccccccchHhhccCChhhHHHHHHHHhccCCC
Q psy15588 305 VTS-LNKRVQILRKMIKLAAYCK-EYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPS 374 (461)
Q Consensus 305 ~~~-~~~Ra~li~kFIkIA~~c~-~l~Nfns~~AI~~gL~~~aV~RL~~TWe~l~~k~kk~~~~L~~L~d~s 374 (461)
|.. .++|+.+++|||+||.+|+ ++||++|++||++||++++|+||++||+.|+.++.+.+-.+++.++|+
T Consensus 116 C~~~~~eR~~lL~k~IqiA~~Lk~~~gNL~sf~AVm~aL~~pqVSRL~~TW~~Lr~k~te~ai~yEk~LkP~ 187 (333)
T 3t6a_A 116 CTGTLEDRAATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQITRLEKTWTALRHQYTQTAILYEKQLKPF 187 (333)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHSHHHHTCHHHHHHHHHHSHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccHHHHHHHHHHHHhhHHhhHHHHHHHHHhhHH
Confidence 964 7899999999999999999 999999999999999999999999999999999999888888888773
No 11
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=97.58 E-value=0.00016 Score=62.09 Aligned_cols=86 Identities=16% Similarity=0.225 Sum_probs=63.8
Q ss_pred CCCcEEEEEee--cCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCc------CCCCCeEEEEeeecC--c-
Q psy15588 122 GQPIIIFRVYC--ADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLL------VSPSDLLLVEVKSTG--E- 190 (461)
Q Consensus 122 ~~~~~~~~vy~--~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Lv~v~~~~--e- 190 (461)
..|..++-||. +|+.|+.++++.++||++|+..|+. ++|+. ..+++|+|||+--.+ +
T Consensus 4 ~~~tf~v~V~~v~p~~py~iv~vt~~STAqdvI~eaL~------------kag~~~~~~~~~~~~dYvLvEev~~~~~~k 71 (117)
T 2c5l_C 4 EEESFFVQVHDVSPEQPRTVIKAPRVSTAQDVIQQTLC------------KAKYSLSILSNPNPSDYVLLEEVVKDTTNK 71 (117)
T ss_dssp -CCEEEEEEESCCSSCCEEEEEEETTCBHHHHHHHHHH------------HTTTSHHHHHSCCGGGEEEEEEEECC----
T ss_pred cCceEEEEEecCCCCCCeEEEEeCCCCcHHHHHHHHHH------------HcCCccccccCCCchHeEEEEEEcccCCCc
Confidence 35677889998 7999999999999999999999999 98863 456899999996312 1
Q ss_pred --------ceecCCCCCCccc--ccccCcccccccCCcc
Q psy15588 191 --------RVVFRDNDLSIPT--ALSLNGRIFVSPKDHL 219 (461)
Q Consensus 191 --------~~~~~~~~~~~~~--~l~ln~r~~~~~~~~~ 219 (461)
.+++.+++..+.. ...-.||+|+..+...
T Consensus 72 ~~~~~~~~~RVL~~~E~~l~~qs~Wk~~gRF~Lk~r~~~ 110 (117)
T 2c5l_C 72 KTTTPKSSQRVLLDQECVFQAQSKWKGAGKFILKLKEQV 110 (117)
T ss_dssp -----CEEEEECCTTSBHHHHHHTCSSCEEEEEEETTTC
T ss_pred cccccCceEEecCCCCCHHHHHHhhCcCceEEEEECccc
Confidence 2456666654422 2334488888877644
No 12
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=97.49 E-value=0.00023 Score=61.15 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=53.6
Q ss_pred cEEEEEee----cCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcC-CCCCeEEEEee----------ecC
Q psy15588 125 IIIFRVYC----ADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLV-SPSDLLLVEVK----------STG 189 (461)
Q Consensus 125 ~~~~~vy~----~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Lv~v~----------~~~ 189 (461)
.-++|||- ++..|+++.+..++||++||..|++ |+|+.. ..++|+||+|. ..+
T Consensus 9 ~g~lkIYg~~L~~~~~Yksvlvt~~tta~~vV~eaLe------------kygL~~~~~~~Y~LveV~~~~~~~~~~~~g~ 76 (116)
T 1wxa_A 9 GGTLRIYADSLKPNIPYKTILLSTTDTADFAVAESLE------------KYGLEKENPKDYCIARVMLPPGAQHSDERGA 76 (116)
T ss_dssp CCEEEECCTTTCSSSCCEEEECCSSCCHHHHHHHHHH------------HHTCSSSCTTTEEEEEEECCSSCCSSSSTTC
T ss_pred CeEEEEeCCcccCCCceEEEEeCCCCCHHHHHHHHHH------------HhCCCCCCchheEEEEEECccccccccCCCc
Confidence 34689996 6899999999999999999999999 999865 67899999996 334
Q ss_pred cceecCCCCCCc
Q psy15588 190 ERVVFRDNDLSI 201 (461)
Q Consensus 190 e~~~~~~~~~~~ 201 (461)
..+++.+++..+
T Consensus 77 ~ErvL~~~E~Pl 88 (116)
T 1wxa_A 77 KEIILDDDECPL 88 (116)
T ss_dssp EEECCCSSCCHH
T ss_pred eEEECCCCCCHH
Confidence 456677777665
No 13
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=97.21 E-value=0.00079 Score=56.31 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=54.6
Q ss_pred CCcEEEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeec-CcceecCCCCCCc
Q psy15588 123 QPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKST-GERVVFRDNDLSI 201 (461)
Q Consensus 123 ~~~~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~-~e~~~~~~~~~~~ 201 (461)
....+||||..|.|+++|.+...+||++|++..++ |.+. .....++|||.... |..+.+.+.+.-+
T Consensus 7 ~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~------------K~~~-~~~~~WaLvE~~P~L~~ER~~EDHE~vv 73 (100)
T 1wgr_A 7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQ------------RAHA-LSDETWGLVECHPHLALERGLEDHESVV 73 (100)
T ss_dssp CSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHC------------SSSC-CCCCCCCEEEEETTTTEEEEECSSSCHH
T ss_pred CCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHH------------HcCC-CCCCCeEEEEecCCCCcEEeccCchhHH
Confidence 34679999999999999999999999999999999 8864 56788999999654 4456677776644
No 14
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=95.80 E-value=0.0096 Score=57.82 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=47.8
Q ss_pred CCCcEEEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeecC-cceecCCCCCC
Q psy15588 122 GQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTG-ERVVFRDNDLS 200 (461)
Q Consensus 122 ~~~~~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~~-e~~~~~~~~~~ 200 (461)
+..+.+++||..|.++++|.|+..+||+||+..+++ +.+. ...+.++|+|+.... -.+.+.+.+..
T Consensus 5 ~~~~~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~------------k~~~-~~~~~W~l~E~~~~l~lER~ledhE~V 71 (256)
T 3hk0_A 5 AAAKQDVKVFSEDGTSKVVEILADMTARDLCQLLVY------------KSHS-VDDNSWTLVEHHPHLGLERCLEDHELV 71 (256)
T ss_dssp ---CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHC------------CC--------EEEEEEETTTTEEEECCTTSBH
T ss_pred CCCceEEEEEecCCcEEEEEECCCCCHHHHHHHHHH------------hcCC-CCCCCEEEEEECCCcccccccccchhH
Confidence 345779999999999999999999999999999888 6543 456789999997664 24556666654
Q ss_pred c
Q psy15588 201 I 201 (461)
Q Consensus 201 ~ 201 (461)
+
T Consensus 72 ~ 72 (256)
T 3hk0_A 72 V 72 (256)
T ss_dssp H
T ss_pred H
Confidence 4
No 15
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=95.62 E-value=0.019 Score=56.44 Aligned_cols=65 Identities=22% Similarity=0.179 Sum_probs=52.6
Q ss_pred CcEEEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeecC-cceecCCCCCCc
Q psy15588 124 PIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTG-ERVVFRDNDLSI 201 (461)
Q Consensus 124 ~~~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~~-e~~~~~~~~~~~ 201 (461)
.+++|+||..|.++++|.|+..+||+||++.++. +.+. ...+.++|+|+...+ -.+.+.+.+..+
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~------------k~~~-~~~~~W~L~E~~~~l~lER~ledhE~V~ 95 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMD------------KSHC-GYSLDWSLVETVSELQMERIFEDHENLV 95 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHH------------HSCC-CCCTTCEEEEEEGGGTEEEECCTTSBHH
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHH------------hcCC-CCCCCeEEEEEcCCccceeccccchhHH
Confidence 4689999999999999999999999999998888 7764 457889999997664 345566665543
No 16
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=95.35 E-value=0.042 Score=46.42 Aligned_cols=54 Identities=15% Similarity=0.074 Sum_probs=45.7
Q ss_pred CCCcEEEEEee--cCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCc-CCCCCeEEEEeee
Q psy15588 122 GQPIIIFRVYC--ADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLL-VSPSDLLLVEVKS 187 (461)
Q Consensus 122 ~~~~~~~~vy~--~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Lv~v~~ 187 (461)
..+..++.||- +|.+|..+++...+||++|+..|.. +.+.. ....+|+|||.+.
T Consensus 6 ~~~tf~v~V~gv~~~ePftI~~~~~~STAkdvl~qaL~------------ka~~~~~~~~~YvL~EE~v 62 (110)
T 2bye_A 6 CLQTHRVTVHGVPGPEPFTVFTINGGTKAKQLLQQILT------------NEQDIKPVTTDYFLMEEKY 62 (110)
T ss_dssp CCCCCEEEESSCSSSSSSEEEECCTTCCHHHHHHHHHC------------CSSSSCCCCCSEEEEEECC
T ss_pred cCcEEEEEEcCCCCCCCcEEEEecCCCcHHHHHHHHHH------------HhcCCCCCcccEEEEEEEe
Confidence 45667889998 6999999999999999999999999 77653 3568999999844
No 17
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=94.49 E-value=0.031 Score=50.38 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=56.6
Q ss_pred EEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEE-eeecCc--ceecCCCCCCccccc
Q psy15588 129 RVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVE-VKSTGE--RVVFRDNDLSIPTAL 205 (461)
Q Consensus 129 ~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~-v~~~~e--~~~~~~~~~~~~~~l 205 (461)
-+|-|-++.+.++|.-.+|++||+++.++ ||.+...+.+++|.+ +..+|| .+.+++.+..+.-++
T Consensus 80 SfflP~gs~k~v~VsS~tTt~eVI~~LL~------------KFkV~dnP~kFALye~vh~~gev~~RKL~d~E~PL~lrL 147 (163)
T 3ddc_B 80 SFYLPLDAIKQMHISSTTTVSEVIQGLLD------------KFMVVDNPQKFALFKRIHKDGQVLFQKLSIADYPLYLRL 147 (163)
T ss_dssp CEEEEEEEEEEEEEETTCCHHHHHHHHHH------------HTTCCSCGGGEEEEEEEEETTEEEEEECCTTCCHHHHHH
T ss_pred eEECCCCceEEEEEccCCcHHHHHHHHHH------------HhcccCChhheEEEEEEccCCcEEEEECCCcCcCHhHHh
Confidence 37888889999999999999999999999 998877888999999 888898 778888887765554
No 18
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=92.44 E-value=0.33 Score=46.56 Aligned_cols=63 Identities=19% Similarity=0.158 Sum_probs=50.6
Q ss_pred CcEEEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeecCc-ceecCCCCC
Q psy15588 124 PIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGE-RVVFRDNDL 199 (461)
Q Consensus 124 ~~~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~~e-~~~~~~~~~ 199 (461)
...+++||..|.++.++.+...+||.||+..+++ +.++ ....+++|+|+-.++. .+.+.+.+.
T Consensus 33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~------------k~~~-~~~~~~~l~E~~~~~~ler~l~d~E~ 96 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFE------------KTHC-DCNVDWCLYEIYPELQIERVFEDHEN 96 (291)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHH------------HHCC-CCCTTEEEEEEETTTTEEEECCTTSB
T ss_pred cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHH------------HhCC-CCCCCeEEEEeccccccceecccchh
Confidence 3578999999999999999999999999999988 8875 3456799999966543 445655544
No 19
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=91.30 E-value=0.37 Score=47.17 Aligned_cols=60 Identities=15% Similarity=0.067 Sum_probs=50.8
Q ss_pred CcEEEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeecCcceecCC
Q psy15588 124 PIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRD 196 (461)
Q Consensus 124 ~~~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~~e~~~~~~ 196 (461)
..+.|+|+.+|.|..++.+...+|++|++..+++ ++||. ..+.+.|.-+...|+..-+.+
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~------------~l~L~-e~~~FgL~~~~~~~~~~wLd~ 75 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCE------------HLNLL-EEDYFGLAIWDNATSKTWLDS 75 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHH------------HHTCS-SGGGEEEEEEEETTEEEECCT
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHH------------HcCCC-CcceeEEEEEcCCCccchhcc
Confidence 3578999999999999999999999999999999 99984 467789988777777665554
No 20
>3ec8_A Putative uncharacterized protein FLJ10324; beta barrel, helix, structural genomics, structural genomics consortium, SGC, cell adhesion; 2.60A {Homo sapiens}
Probab=90.82 E-value=0.36 Score=43.46 Aligned_cols=48 Identities=15% Similarity=0.276 Sum_probs=42.2
Q ss_pred EEEEee----cCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcC-CCCCeEEEEee
Q psy15588 127 IFRVYC----ADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLV-SPSDLLLVEVK 186 (461)
Q Consensus 127 ~~~vy~----~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Lv~v~ 186 (461)
++|||= ++--|+++......||+++|..|++ +.|+.+ .+++|+||.|.
T Consensus 37 ~LKIfG~~L~~G~~YKSvLas~rstA~elVkEALE------------RYgL~ke~~~~y~Lcdvi 89 (166)
T 3ec8_A 37 VLKVFGDSVCTGTHYKSVLATGTSSARELVKEALE------------RYALDPRQAGQYVLCDVV 89 (166)
T ss_dssp EEEEECCC--CCSCCEEEEEETTCCHHHHHHHHHH------------HTTSCGGGGGGEEEEEEE
T ss_pred ceEecccccCCCCCceeeeccccccHHHHHHHHHH------------HhccCcCCcceeEEEEee
Confidence 688885 4777999999999999999999999 999866 46789999995
No 21
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=89.12 E-value=0.59 Score=45.24 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=46.3
Q ss_pred EEEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeecCcceecC
Q psy15588 126 IIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFR 195 (461)
Q Consensus 126 ~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~~e~~~~~ 195 (461)
+.|+||.+|.++. +.+...+|++|++..+++ ++|+ ...+.++|.-+..+|+..-+.
T Consensus 2 i~~~V~l~d~~~~-~~v~~~tt~~el~~~v~~------------~l~L-~e~~~FgL~~~~~~~~~~wLd 57 (294)
T 1ef1_A 2 ISVRVTTMDAELE-FAIQPNTTGKQLFDQVVK------------TIGL-REVWFFGLQYQDTKGFSTWLK 57 (294)
T ss_dssp EEEEEEETTEEEE-EEECTTCBHHHHHHHHHH------------HHTC-CCGGGEEEEEEBTTSCEEECC
T ss_pred EEEEEEECCceEE-EEECCCCcHHHHHHHHHH------------HcCC-CCcceeEEEEECCCCceeecc
Confidence 5789999999764 999999999999999999 9998 445688998877677765543
No 22
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=87.11 E-value=0.7 Score=46.76 Aligned_cols=59 Identities=8% Similarity=-0.023 Sum_probs=49.1
Q ss_pred EEEEEeecCCC----eeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeee-cCcceecCCC
Q psy15588 126 IIFRVYCADHT----FCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKS-TGERVVFRDN 197 (461)
Q Consensus 126 ~~~~vy~~d~~----~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~-~~e~~~~~~~ 197 (461)
.+|+||.+|.+ +.++.+..++|++||+..+++ ++|| ...+.++|..... +|+..-+.|+
T Consensus 8 ~~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~------------~lgL-~~~~~FgL~~~~~~~~~~~wL~~~ 71 (375)
T 2al6_A 8 KVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVD------------CHKV-KNVACYGLRLSHLQSEEVHWLHLD 71 (375)
T ss_dssp EEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHH------------HTTC-SCGGGEEEEEEETTSSCEEEECTT
T ss_pred ceEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHH------------HcCC-CeEeEEEEEEEEcCCCceEeeCCc
Confidence 47899999988 999999999999999999999 9998 6678899988764 4555555544
No 23
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=85.08 E-value=1.9 Score=45.77 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=46.6
Q ss_pred CCCcEEEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEee
Q psy15588 122 GQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVK 186 (461)
Q Consensus 122 ~~~~~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~ 186 (461)
....+.++||.+|.+..++.+...+|++|++..+++ ++|+..+.+.++|....
T Consensus 213 ~~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~------------~lgL~e~~~~FgL~~~~ 265 (555)
T 3au4_A 213 HRQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIR------------GLAMEDSRNMFALFEYN 265 (555)
T ss_dssp TTCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHH------------HTTCTTCCSEEEEEEES
T ss_pred hCCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHH------------HcCCCCCCCceEEEEEe
Confidence 355789999999999999999999999999999999 99996546789998764
No 24
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=84.90 E-value=1.7 Score=42.52 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=47.3
Q ss_pred CCCcEEEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeecCcceecCC
Q psy15588 122 GQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRD 196 (461)
Q Consensus 122 ~~~~~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~~e~~~~~~ 196 (461)
....+.|+||.+|.+ ..+.+...+|++|++..+++ ++|+. ..+.+.|..+ ..|+..-+.+
T Consensus 19 ~~~~~~~~V~lldg~-~~~~v~~~t~~~el~~~v~~------------~l~L~-e~~~FgL~~~-~~~~~~wL~~ 78 (314)
T 1h4r_A 19 QPKTFTVRIVTMDAE-MEFNCEMKWKGKDLFDLVCR------------TLGLR-ETWFFGLQYT-IKDTVAWLKM 78 (314)
T ss_dssp --CEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHH------------HHTCC-CGGGEEEEEE-ETTEEEECCT
T ss_pred CCCeeEEEEEeCCce-EEEEeCCCCcHHHHHHHHHH------------HhCCC-CCccceEEEE-eCCcCeeCCC
Confidence 456789999999986 44999999999999999999 99984 4677888777 6666655543
No 25
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=84.49 E-value=1.5 Score=43.96 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=44.5
Q ss_pred CCcEEEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEee
Q psy15588 123 QPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVK 186 (461)
Q Consensus 123 ~~~~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~ 186 (461)
.....|+|+.+|.+...+.+...+|++|++..+++ ++|+. ..+.++|....
T Consensus 83 ~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~------------~l~L~-e~~~FgL~~~~ 133 (371)
T 3ivf_A 83 KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICA------------RIGIT-NHDEYSLVREL 133 (371)
T ss_dssp ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH------------HTTCS-CGGGEEEECCC
T ss_pred CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHH------------HcCCC-CccccEEEEEe
Confidence 34567899999999999999999999999999999 99984 46789997764
No 26
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=82.41 E-value=4.7 Score=32.46 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=46.8
Q ss_pred EEEEEeecCCC---eeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCC-CCCeEEEEeeecCcceecCCCC
Q psy15588 126 IIFRVYCADHT---FCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVS-PSDLLLVEVKSTGERVVFRDND 198 (461)
Q Consensus 126 ~~~~vy~~d~~---~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Lv~v~~~~e~~~~~~~~ 198 (461)
.++||-...+. |++|++.-..-+-.|+..|.+ |.++.+. +++|.|+.+-+.|....++++.
T Consensus 4 ~iiRVs~d~~~gn~YKSI~ltsqDrtp~vI~~al~------------Khnl~~~~~~~y~L~Q~Lp~~kEL~iPd~a 68 (87)
T 1lfd_A 4 CIIRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMD------------KHNLDEDEPEDYELLQIISEDHKLKIPENA 68 (87)
T ss_dssp EEEEEEESSCSSEEEEEEEEETTCBHHHHHHHHHH------------HTTCCSSCGGGEEEEEESSSSCEEECCTTS
T ss_pred EEEEEEEecCCCcEEEEEEEecCCCcHHHHHHHHH------------HcCCCCCCccceEEEEEcCCCCEEecCCCc
Confidence 45555543222 899999988889999999999 9999765 8999999998777777766443
No 27
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=81.69 E-value=7.6 Score=32.77 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=53.9
Q ss_pred CCCCcEEEEEeecCCC---eeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcC-CCCCeEEEEeeecCcceecCC
Q psy15588 121 SGQPIIIFRVYCADHT---FCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLV-SPSDLLLVEVKSTGERVVFRD 196 (461)
Q Consensus 121 ~~~~~~~~~vy~~d~~---~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Lv~v~~~~e~~~~~~ 196 (461)
+..|-.++||-..|+. |++|++.-..-+..|+..|.+ |.++.+ .+++|.|+.+-..|....+++
T Consensus 24 q~~d~~IIRVs~d~~~gn~YKSIlltsqDktp~VI~raL~------------Khnl~~~~~~~y~L~Q~Lp~~kEL~iPd 91 (115)
T 1rax_A 24 QVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMD------------KHNLEEEEPEDYELLQILSDDRKLKIPE 91 (115)
T ss_dssp CSSCEEEEEEEESSSSCCCCEEEEEETTCCHHHHHHHHHH------------HHTCTTSCSTTEEEEEECSSSCEEEECT
T ss_pred CCCCeEEEEEEEecCCCcEEEEEEEecCCCcHHHHHHHHH------------HcCCCCCCccceEEEEEcCCCCeEecCC
Confidence 3677788899886544 999999999999999999999 999976 578999999977666677765
Q ss_pred CC
Q psy15588 197 ND 198 (461)
Q Consensus 197 ~~ 198 (461)
+.
T Consensus 92 ~a 93 (115)
T 1rax_A 92 NA 93 (115)
T ss_dssp TS
T ss_pred Cc
Confidence 43
No 28
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=79.81 E-value=2.5 Score=45.29 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=47.2
Q ss_pred cEEEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeecCcceecCC
Q psy15588 125 IIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRD 196 (461)
Q Consensus 125 ~~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~~e~~~~~~ 196 (461)
.+.|+||.+|.++ .+.+...+|+++|+..+++ ++|| ...+.+.|.-+...|+...+.+
T Consensus 4 ~i~v~V~llDgt~-e~~vd~~tt~~ell~~V~~------------~LgL-~e~~~FGL~~~d~~~~~~WLd~ 61 (575)
T 2i1j_A 4 SMNVRVTTMDAEL-EFAIQQTTTGKQLFDQVVK------------TIGL-REVWFFGLQYTDSKGDLTWIKL 61 (575)
T ss_dssp EEEEEEECSSCEE-EEEEETTCBHHHHHHHHHH------------HHTC-CCGGGEEEEEEBTTSCEEECCT
T ss_pred eEEEEEEeCCCeE-EEEECCCCCHHHHHHHHHH------------HcCC-CCccceeEEEEecCcchhHhhc
Confidence 4789999999876 5999999999999999999 9998 4457788887766676655543
No 29
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=79.58 E-value=3.4 Score=45.01 Aligned_cols=51 Identities=24% Similarity=0.154 Sum_probs=45.1
Q ss_pred CCcEEEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEee
Q psy15588 123 QPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVK 186 (461)
Q Consensus 123 ~~~~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~ 186 (461)
...+.|+|+.+|.++..+.+...+|++|++..+++ ++|+. ..+.++|..+.
T Consensus 261 ~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~------------~LgL~-e~~~FgL~~~~ 311 (655)
T 3pvl_A 261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALAD------------KISLK-DRFGFSLYIAL 311 (655)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHH------------HTTCS-SCTTEEEEEEE
T ss_pred CCceEEEEEecCCceEEEEEccCCcHHHHHHHHHH------------HcCCc-ccccceeEEec
Confidence 34789999999999999999999999999999999 99984 46789997653
No 30
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=78.25 E-value=4.8 Score=34.76 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=40.8
Q ss_pred EEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEe
Q psy15588 127 IFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEV 185 (461)
Q Consensus 127 ~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v 185 (461)
.++|=.+|-+++++++.-+.|+-+++..+++ ++|+. ..++|+||.-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~------------kigI~-n~~ey~L~~~ 58 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICA------------RIGIT-NHDEYSLVRE 58 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHH------------HHTCC-CCSSEEEEEE
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHH------------HhCCC-Cccccccccc
Confidence 6889999999999999999999999999999 99984 4577999763
No 31
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=77.82 E-value=11 Score=32.71 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=57.3
Q ss_pred CCCCCcEEEEEeecCCC---eeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCC-CCCeEEEEeeecCcceecC
Q psy15588 120 PSGQPIIIFRVYCADHT---FCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVS-PSDLLLVEVKSTGERVVFR 195 (461)
Q Consensus 120 ~~~~~~~~~~vy~~d~~---~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Lv~v~~~~e~~~~~ 195 (461)
.+..|-.++||-..|+. |++|++.-..-+-.|++.|.+ |.++.+. +++|.|+.+-..|...+++
T Consensus 20 qq~~d~~IIRVsvd~~~gnlYKSIllTsqDrtp~VI~rAL~------------Khnl~~~~~~~y~LvQ~Lp~~kEL~IP 87 (140)
T 3kh0_A 20 QQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMD------------KHNLEEEEPEDYELLQILSDDRKLKIP 87 (140)
T ss_dssp CSSSCEEEEEEEEECSSSEEEEEEEEETTCBHHHHHHHHHH------------HTTCTTSCGGGEEEEEEEETTEEEECC
T ss_pred CCCCCeEEEEEEEEcCCCcEEEEEEeecccccHHHHHHHHH------------HhCCCCCchhceEEEEEcCCCCeEecC
Confidence 45788888999876543 999999999999999999999 9998765 5999999998777677776
Q ss_pred CCCCCccccc
Q psy15588 196 DNDLSIPTAL 205 (461)
Q Consensus 196 ~~~~~~~~~l 205 (461)
++ .+++-.+
T Consensus 88 d~-ANVFYAM 96 (140)
T 3kh0_A 88 EN-ANVFYAM 96 (140)
T ss_dssp TT-CBHHHHS
T ss_pred CC-CceEEEe
Confidence 54 4454444
No 32
>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=74.62 E-value=6.3 Score=31.90 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=50.0
Q ss_pred CCcEEEEEeecC----CCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcC-CCCCeEEEEeeecCcceecCCC
Q psy15588 123 QPIIIFRVYCAD----HTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLV-SPSDLLLVEVKSTGERVVFRDN 197 (461)
Q Consensus 123 ~~~~~~~vy~~d----~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Lv~v~~~~e~~~~~~~ 197 (461)
.|-.++||-..+ .-|++|++.-..-+-.|+..|.+ |.++.+ .+++|.|+.+-..|....++++
T Consensus 3 ~d~~iIRVs~e~~~~Gn~YKSIlltsqDktp~vI~~al~------------Khnl~~~~~~~y~L~Q~Lp~~kEL~iPd~ 70 (90)
T 1rlf_A 3 SDCRIIRVQMELGEDGSVYKSILVTSQDKAPSVISRVLK------------KNNRDSAVASEFELVQLLPGDRELTIPHS 70 (90)
T ss_dssp SCEEEEEEEECCSSSCCSCCEEEEETTCCCTTHHHHHHH------------HTTTTSCCCCCEEEEETTTTCEECCTTSC
T ss_pred CceEEEEEEEEeCCCCceEEEEEEecCCCcHHHHHHHHH------------HcCCCCCChhheEEEEEcCCCCEEecCCC
Confidence 345567776654 23999999888888888888998 999987 8899999999776666666654
Q ss_pred CC
Q psy15588 198 DL 199 (461)
Q Consensus 198 ~~ 199 (461)
.-
T Consensus 71 aN 72 (90)
T 1rlf_A 71 AN 72 (90)
T ss_dssp ST
T ss_pred cc
Confidence 43
No 33
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=65.82 E-value=11 Score=31.15 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=50.7
Q ss_pred CCCcEEEEEeecCC---CeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCC-CCCeEEEEeeecCcceecCCC
Q psy15588 122 GQPIIIFRVYCADH---TFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVS-PSDLLLVEVKSTGERVVFRDN 197 (461)
Q Consensus 122 ~~~~~~~~vy~~d~---~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Lv~v~~~~e~~~~~~~ 197 (461)
..|-.++||-...+ -|++|++.-..-+..|+..|.+ |+++.+. +++|.|+.+-..|....++++
T Consensus 15 ~~d~~iIRVs~e~~~g~~YKSIlltsqDrtp~VI~raL~------------Khnl~~~~~~~y~L~Q~Lp~~kEL~iPd~ 82 (103)
T 1ef5_A 15 NEDTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMS------------KHNLESDPAEEYELVQVISEDKELVIPDS 82 (103)
T ss_dssp -CCCCCEEEEESSCSSCCCCCBCCSSCCCTHHHHHHHTT------------TTTCCCCSSSSEEEEEECSSSCCEESSCC
T ss_pred CCCeEEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHH------------HcCCCCCChhheEEEEEcCCCCEEecCCC
Confidence 66667788876433 2899999888888889898988 9999776 499999999876777777654
Q ss_pred CC
Q psy15588 198 DL 199 (461)
Q Consensus 198 ~~ 199 (461)
.-
T Consensus 83 aN 84 (103)
T 1ef5_A 83 AN 84 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 34
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=64.28 E-value=9 Score=39.00 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=47.2
Q ss_pred CCCcEEEEEee------cCCCeeeEeecccCCHHHHHHHHH--HHHHHHHhhhhhhhhcCc-CCCCCeEEEEee-ecCcc
Q psy15588 122 GQPIIIFRVYC------ADHTFCTLRFPVNATAEQIKTSAA--EKLAEQIKTSAAEKLGLL-VSPSDLLLVEVK-STGER 191 (461)
Q Consensus 122 ~~~~~~~~vy~------~d~~~~~~~~~~~~t~~ev~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~Lv~v~-~~~e~ 191 (461)
+.+.-++||+- +|.++++++...++||++|+..++ . ++|+. ...+.+.|.-+. .+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~------------kiG~~i~~~~~FgL~~~~~~~~~~ 85 (392)
T 4eku_A 18 KEDVRILKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSG------------RIGPNIRLAECYGLRLKHMKSDEI 85 (392)
T ss_dssp GGGEEEEEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTT------------TTCSSCCCGGGEEEEEEESSSCCE
T ss_pred cceeeeEEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHh------------hcCCCcCccceEEEEEEECCCCce
Confidence 55566899998 899999999999999999999988 5 77763 355778886553 34555
Q ss_pred eecC
Q psy15588 192 VVFR 195 (461)
Q Consensus 192 ~~~~ 195 (461)
.-+.
T Consensus 86 ~wL~ 89 (392)
T 4eku_A 86 HWLH 89 (392)
T ss_dssp EEEC
T ss_pred EECC
Confidence 4443
No 35
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=62.54 E-value=8.8 Score=41.34 Aligned_cols=58 Identities=9% Similarity=-0.036 Sum_probs=46.5
Q ss_pred EEEEEeecCCC----eeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeee-cCcceecCC
Q psy15588 126 IIFRVYCADHT----FCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKS-TGERVVFRD 196 (461)
Q Consensus 126 ~~~~vy~~d~~----~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~-~~e~~~~~~ 196 (461)
-+|+||.+|.. ++.++...++|+++|+..+++ ++|+ ...+=+.|.-... +|+..-+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~------------~l~i-~~~~~fgL~~~~~~~~~~~wl~~ 70 (656)
T 2j0j_A 8 KVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVD------------CHKV-KNVACYGLRLSHLQSEEVHWLHL 70 (656)
T ss_dssp EEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHH------------HTTC-SCGGGEEEEEEESSSCCEEEECT
T ss_pred hheEEeccCCCCCCceeEEEeCCCCcHHHHHHHHHH------------hcCc-ceeeeEEEEEeecccCceeeeCC
Confidence 37889999987 999999999999999999999 8887 4455677775544 577766654
No 36
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens}
Probab=61.75 E-value=10 Score=30.52 Aligned_cols=56 Identities=23% Similarity=0.369 Sum_probs=39.7
Q ss_pred EEEEEeec--CCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeecCcceecCCCCC
Q psy15588 126 IIFRVYCA--DHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDL 199 (461)
Q Consensus 126 ~~~~vy~~--d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~~e~~~~~~~~~ 199 (461)
..++||.. +...+.+-+..+||+++|| +.++ ..| . +++.|+|.=.+.|+ .++|++.
T Consensus 7 mel~Vwv~g~er~v~~vgvT~~TTC~DVV-aL~~------------~~G---~-~~~~LvE~WR~~ER-~L~~~er 64 (86)
T 2uwq_A 7 MFLTVYLSNNEQHFTEVPVTPETICRDVV-DLCK------------EPG---E-SDCHLAEVWCGSER-PVADNER 64 (86)
T ss_dssp EEEEEECSSCSSCEEEEEECTTCBSHHHH-HHSC------------SSC---S-SSCEEEEEETTEEE-EECTTCB
T ss_pred eEEEEEecCCccEEEccCCCCCCcHHHHH-HHHH------------ccC---C-CcEEEEeeeCCCcc-cCCCccc
Confidence 46778874 4556667999999999999 6676 553 2 89999998554444 4445444
No 37
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=61.09 E-value=8.2 Score=37.80 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=40.0
Q ss_pred cEEEEEeecCCCeeeEeecc--cCCHHHHHHHHHHHHHHHHhhhhhhhhcCcC-CCCCeEEEEeeecCc
Q psy15588 125 IIIFRVYCADHTFCTLRFPV--NATAEQIKTSAAEKLAEQIKTSAAEKLGLLV-SPSDLLLVEVKSTGE 190 (461)
Q Consensus 125 ~~~~~vy~~d~~~~~~~~~~--~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Lv~v~~~~e 190 (461)
-+-++||.+|-++..+.+.. +|||+|+ .+ ++|+.. ..+.++|-.++..+|
T Consensus 5 ~~~i~V~l~dg~~~~~~i~~~~~tt~~el----~e------------~lgL~~~~~~~FaL~~~~~~~e 57 (322)
T 4dxa_B 5 FEKVRIYRMDGSYRSVELKHGNNTTVQQI----ME------------GMRLSQETQQYFTIWICSENLS 57 (322)
T ss_dssp CCEEEEECTTSCEEEEECTTGGGCCHHHH----HT------------TSSCCTTGGGGEEEEEECSSCE
T ss_pred ceEEEEEEECCcEEEEEEcCCCCCcHHHH----HH------------HhCcCccccCeeEEEEECCccc
Confidence 45689999999999999999 9999999 35 677643 345799998876655
No 38
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=56.51 E-value=12 Score=30.63 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=32.7
Q ss_pred eecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeecCcceecCCCCC
Q psy15588 141 RFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDL 199 (461)
Q Consensus 141 ~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~~e~~~~~~~~~ 199 (461)
-+..+||++|||.+.++ .. |.+.+|+|+|.=. |-.+.++|++.
T Consensus 23 GvT~~TTC~DVV~aL~~------------~~---G~~~~y~LvE~wR-g~ER~L~~~~r 65 (95)
T 2cs4_A 23 GVTEVTTCQEVVIALAQ------------AI---GRTGRYTLIEKWR-DTERHLAPHEN 65 (95)
T ss_dssp SBCSSSCHHHHHHHHHH------------HH---SCCSEEEEEEEET-TEEEECCSSSC
T ss_pred CCCCCCcHHHHHHHHHh------------cc---CCCccEEEEEecC-CCeecCCCccc
Confidence 68999999999999998 55 4578999999854 44445555554
No 39
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=49.81 E-value=79 Score=26.31 Aligned_cols=67 Identities=28% Similarity=0.294 Sum_probs=52.4
Q ss_pred CcEEEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcC---cCCCCCeEEEEeeecCcceecCCCCC
Q psy15588 124 PIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGL---LVSPSDLLLVEVKSTGERVVFRDNDL 199 (461)
Q Consensus 124 ~~~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Lv~v~~~~e~~~~~~~~~ 199 (461)
+.+.+.+..+---+.+++++.++|-.||...+-+ -|+++.+ .+..++|..+-|+.+||.-.+-+..+
T Consensus 18 ~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~---------eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsr 87 (108)
T 2v1y_A 18 PRILVECLLPNGMIVTLECLREATLITIKHELFK---------EARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETR 87 (108)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHH---------HGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTS
T ss_pred CcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHH---------HHHhCchHHHhCCccceEEEEecCCceEEEeEcCce
Confidence 5567788888889999999999999999988777 2334543 25678999999999898877755544
No 40
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=48.75 E-value=62 Score=25.90 Aligned_cols=31 Identities=10% Similarity=0.081 Sum_probs=29.8
Q ss_pred EEEEeecCCCeeeEeecccCCHHHHHHHHHH
Q psy15588 127 IFRVYCADHTFCTLRFPVNATAEQIKTSAAE 157 (461)
Q Consensus 127 ~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~ 157 (461)
+++||-|++....+.+....|+++.+.-+.+
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk 39 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALK 39 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHH
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHH
Confidence 8999999999999999999999999998888
No 41
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=47.42 E-value=39 Score=27.52 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=30.3
Q ss_pred EEEEEeecCCCeeeEeecccCCHHHHHHHHHH
Q psy15588 126 IIFRVYCADHTFCTLRFPVNATAEQIKTSAAE 157 (461)
Q Consensus 126 ~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~ 157 (461)
-+++||-|++...++.+....|+++.++-+.+
T Consensus 18 ~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk 49 (95)
T 2l05_A 18 PIVRVFLPNKQRTVVPARCGVTVRDSLKKALM 49 (95)
T ss_dssp CEEEEEETTTEEEEEECCTTCBHHHHHHHHHH
T ss_pred cEEEEECCCCCeEEEEecCCcCHHHHHHHHHH
Confidence 38999999999999999999999999998888
No 42
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=42.65 E-value=32 Score=27.79 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=34.5
Q ss_pred EEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEE
Q psy15588 128 FRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLL 182 (461)
Q Consensus 128 ~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 182 (461)
+-|-+++-.-.++.+..++|..+|+..|.+ |+|+ .++++.|
T Consensus 12 v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~------------K~gl--~~~~~~L 52 (90)
T 2al3_A 12 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCR------------RQDF--NPSEYDL 52 (90)
T ss_dssp EEEECTTSCEEEECCCTTSBHHHHHHHHHH------------HTTC--CGGGCEE
T ss_pred EEEEcCCCcEEEEEECCCCCHHHHHHHHHH------------HhCC--ChhhCeE
Confidence 446777788889999999999999999999 9987 3567766
No 43
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=41.87 E-value=51 Score=26.91 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=30.6
Q ss_pred cEEEEEeecCCCeeeEeecccCCHHHHHHHHHH
Q psy15588 125 IIIFRVYCADHTFCTLRFPVNATAEQIKTSAAE 157 (461)
Q Consensus 125 ~~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~ 157 (461)
+-+++||-|++....+.+....|+++.+.-|.+
T Consensus 13 ~~~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk 45 (96)
T 3ny5_A 13 KPIVRVFLPNKQRTVVPARCGVTVRDSLKKALM 45 (96)
T ss_dssp SCEEEEEETTTEEEEEECCTTCBHHHHHHHHHH
T ss_pred hCEEEEECCCCceEEEEecCCcCHHHHHHHHHH
Confidence 348999999999999999999999999998887
No 44
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=33.98 E-value=76 Score=25.11 Aligned_cols=67 Identities=16% Similarity=0.110 Sum_probs=44.5
Q ss_pred EEEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeee--cCcceecCCCCCCccc
Q psy15588 126 IIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKS--TGERVVFRDNDLSIPT 203 (461)
Q Consensus 126 ~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~--~~e~~~~~~~~~~~~~ 203 (461)
+.+||++.| -.-|++|.+.+-+++...+++ |+++. ++...| ..+. +|+.++ .+|.++-+
T Consensus 6 ~~VKV~~~~--tvairvp~~~~y~~L~~~l~~------------kL~l~--~~~~~L-sYk~~~s~~~vi--~~d~dl~~ 66 (83)
T 1oey_A 6 YTLKVHYKY--TVVMKTQPGLPYSQVRDMVSK------------KLELR--LEHTKL-SYRPRDSNELVP--LSEDSMKD 66 (83)
T ss_dssp EEEEEESSS--EEEEEECTTCCHHHHHHHHHH------------HTTCC--GGGCCE-EECCTTCSSCEE--CCTTTHHH
T ss_pred EEEEEEEEE--EEEEECCCCCCHHHHHHHHHH------------HhCCC--cceeEE-EeeCCCCCCeec--cChHHHHH
Confidence 789999994 677899999999999999998 88652 333333 3332 344443 34455555
Q ss_pred cccc--Cccc
Q psy15588 204 ALSL--NGRI 211 (461)
Q Consensus 204 ~l~l--n~r~ 211 (461)
..+. |+|+
T Consensus 67 aw~~~~n~~L 76 (83)
T 1oey_A 67 AWGQVKNYCL 76 (83)
T ss_dssp HHTTCBTTEE
T ss_pred HHHhccCCcE
Confidence 5555 6664
No 45
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=31.79 E-value=56 Score=25.62 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=29.6
Q ss_pred EEEEeecCCCeeeEeecccCCHHHHHHHHHH
Q psy15588 127 IFRVYCADHTFCTLRFPVNATAEQIKTSAAE 157 (461)
Q Consensus 127 ~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~ 157 (461)
+++||-|++....+.+....|+++.++-+.+
T Consensus 3 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk 33 (77)
T 1c1y_B 3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALK 33 (77)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHH
T ss_pred eEEEECCCCceEEEEecCCcCHHHHHHHHHH
Confidence 6899999999999999999999999998888
No 46
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.03 E-value=1.1e+02 Score=25.01 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=37.9
Q ss_pred CCCcEEEEEeecC----CCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEE
Q psy15588 122 GQPIIIFRVYCAD----HTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLV 183 (461)
Q Consensus 122 ~~~~~~~~vy~~d----~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv 183 (461)
.+.-..++|.+++ ..-.++.+..+.|+.++...+++ +.|+ +++...|+
T Consensus 12 ~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~------------k~gi--p~~qQrLI 63 (100)
T 1wju_A 12 TTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAE------------TFGL--QENYIKIV 63 (100)
T ss_dssp CCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHH------------HTTC--CSTTCEEE
T ss_pred hcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHH------------HHCc--CHHHeEEE
Confidence 3445578899988 55778899999999999999999 8874 45666665
No 47
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=24.24 E-value=2.4e+02 Score=23.31 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=29.8
Q ss_pred EEEEeecCCCeeeEeecccCCHHHHHHHHHH
Q psy15588 127 IFRVYCADHTFCTLRFPVNATAEQIKTSAAE 157 (461)
Q Consensus 127 ~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~ 157 (461)
+++||-|.+....+.+....|++|.+.-|.+
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk 50 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALK 50 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHH
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHH
Confidence 7999999999999999999999999998888
No 48
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=22.25 E-value=2.8e+02 Score=22.01 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=37.1
Q ss_pred CCCCcEEEEEeecCC--CeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEE
Q psy15588 121 SGQPIIIFRVYCADH--TFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLV 183 (461)
Q Consensus 121 ~~~~~~~~~vy~~d~--~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv 183 (461)
++.+.+-+.|=+..- ...+++++.+.|+.++...+.+ +.|+ +++...|.
T Consensus 10 ~~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~------------~~Gi--p~~~QrLi 60 (97)
T 2kj6_A 10 HGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWK------------KCGT--SVNSMALE 60 (97)
T ss_dssp CCCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHH------------HHCC--CTTSEEEE
T ss_pred CCCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHH------------HHCc--CHHHeEEE
Confidence 377788888876333 3688999999999999999888 8874 45565554
No 49
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.84 E-value=3.6e+02 Score=22.65 Aligned_cols=59 Identities=15% Similarity=0.221 Sum_probs=43.3
Q ss_pred CCCcEEEEEe-ecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeecCcceecCCCCC
Q psy15588 122 GQPIIIFRVY-CADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDL 199 (461)
Q Consensus 122 ~~~~~~~~vy-~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~~e~~~~~~~~~ 199 (461)
+...+-++|- .++..-.++.+..++|+.++...+++ +++ .+.+.+.|.= + +.++++++.
T Consensus 12 ~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~------------~~~--iP~e~qrLIy---~--GKiLKD~eT 71 (118)
T 2daf_A 12 EDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSH------------LLG--IPHSVLQIRY---S--GKILKNNET 71 (118)
T ss_dssp CSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHH------------HHT--CCTTTEEEEE---T--TEEECSSCC
T ss_pred cCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHh------------hhC--CChHHEEEEE---C--CeEcCCcch
Confidence 3445778886 77777789999999999999999999 886 4567777642 2 335566543
No 50
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.61 E-value=2.9e+02 Score=21.46 Aligned_cols=44 Identities=20% Similarity=0.418 Sum_probs=32.1
Q ss_pred EEEEEee---cCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEE
Q psy15588 126 IIFRVYC---ADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLV 183 (461)
Q Consensus 126 ~~~~vy~---~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv 183 (461)
+-+.|=+ .+......+++.++|++++...+.+ .+|+ +++.+.|.
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~------------~~gi--p~~~q~L~ 56 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSR------------LLKV--PVSELLLS 56 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHT------------TTTC--CTTTCEEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHH------------HHCC--ChhHeEEE
Confidence 4455544 3555788899999999999998888 8874 44555554
No 51
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=20.31 E-value=2.4e+02 Score=22.13 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=39.9
Q ss_pred CCcEEEEEeecCCCeeeEeecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeecCcce
Q psy15588 123 QPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERV 192 (461)
Q Consensus 123 ~~~~~~~vy~~d~~~~~~~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~~e~~ 192 (461)
++.+.++|-..|-.-.++.+..+++.+.|+.+-++ +.|+ +.+.+.+ -.+|+++
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~------------~~gi--~~~~~rf---~FdG~~l 55 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE------------RQGL--SMRQIRF---RFDGQPI 55 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHH------------HTTC--CSTTEEE---EETTEEC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHH------------HhCC--CcccEEE---EECCEEc
Confidence 45677888888888899999999999999999998 8875 2344333 4566654
Done!