RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15588
(461 letters)
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4,
CAMP, SP-camps, GEF, gunanine nucleotide exchange
factor, G-protein, GTP-binding, nucleotide-binding; HET:
SP1; 2.20A {Mus musculus}
Length = 694
Score = 337 bits (866), Expect = e-109
Identities = 187/430 (43%), Positives = 277/430 (64%), Gaps = 27/430 (6%)
Query: 22 FQCTFHMDSSNHDKDFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEVESDS 81
+ + D+ L+ KR V++ V +W ++ ++ +D M F+++ V D+
Sbjct: 237 YHAQPSQGTEQERMDYALNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDA 296
Query: 82 TMWSGLTEEASLMHHVMTHMKR------------YQDERAASAGQKWKLPPSGQPIIIFR 129
M + E+ + ++ + Q + + P G ++F+
Sbjct: 297 RMMAAFKEQLPELEKIVKQISEDAKAPQKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFK 356
Query: 130 VYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTG 189
VYC DHT+ T+R PV A+ +++ ++ A+KL S L++V++ S G
Sbjct: 357 VYCIDHTYTTIRVPVAASVKEVISAVADKLG---------------SGEGLIIVKMNSGG 401
Query: 190 ERVVFRDNDLSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEGMDFDLETFSAKELAF 249
E+VV + ND+S+ T L++NGR+F P++ D+LT + EQE T G E S+K+LA+
Sbjct: 402 EKVVLKSNDVSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTTGTVGTFELMSSKDLAY 461
Query: 250 HMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLN 309
MT +DW+LF +HE EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+
Sbjct: 462 QMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLS 521
Query: 310 KRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEA 369
KRVQ+L+K IK+AA+CKEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+
Sbjct: 522 KRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFES 581
Query: 370 LIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTL 429
L+DPS+NHRAYR +KL+ P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T
Sbjct: 582 LMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTA 641
Query: 430 RTLRYCRTRH 439
RT+RY R++
Sbjct: 642 RTVRYYRSQP 651
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 334 bits (856), Expect = e-105
Identities = 187/432 (43%), Positives = 277/432 (64%), Gaps = 27/432 (6%)
Query: 20 KSFQCTFHMDSSNHDKDFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEVES 79
+ + D+ L+ KR V++ V +W ++ ++ +D M F+++ V
Sbjct: 540 AHYHAQPSQGTEQERMDYALNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSD 599
Query: 80 DSTMWSGLTEEASLMHHVMTHMKRY------------QDERAASAGQKWKLPPSGQPIII 127
D+ M + E+ + ++ + Q + + P G ++
Sbjct: 600 DARMMAAFKEQLPELEKIVKQISEDAKAPQKKHKVLLQQFNTGDERAQKRQPIRGSDEVL 659
Query: 128 FRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKS 187
F+VYC DHT+ T+R PV A+ +++ ++ A+KL S L++V++ S
Sbjct: 660 FKVYCIDHTYTTIRVPVAASVKEVISAVADKLG---------------SGEGLIIVKMNS 704
Query: 188 TGERVVFRDNDLSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEGMDFDLETFSAKEL 247
GE+VV + ND+S+ T L++NGR+F P++ D+LT + EQE T G E S+K+L
Sbjct: 705 GGEKVVLKSNDVSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTTGTVGTFELMSSKDL 764
Query: 248 AFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTS 307
A+ MT +DW+LF +HE EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L +
Sbjct: 765 AYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQ 824
Query: 308 LNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTEL 367
L+KRVQ+L+K IK+AA+CKEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E
Sbjct: 825 LSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEF 884
Query: 368 EALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQ 427
E+L+DPS+NHRAYR +KL+ P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A
Sbjct: 885 ESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIAN 944
Query: 428 TLRTLRYCRTRH 439
T RT+RY R++
Sbjct: 945 TARTVRYYRSQP 956
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain
homology, guanine-nucleotide exchange factor, S GTPase
RAL subfamily; 2.24A {Homo sapiens}
Length = 271
Score = 247 bits (633), Expect = 8e-80
Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 2/228 (0%)
Query: 213 VSPKDHLDALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTV 272
+ D L+ +C ++Y + + FD+ + +E A +TL D +F +I EL
Sbjct: 3 LGSSDSLEGQSCDYASKSY-DAVVFDVLKVTPEEFASQITLMDIPVFKAIQPEELASCGW 61
Query: 273 GRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNIN 332
+ + N+ F RRFN++ +WV+ EIL +L R +IL +K+A E N++
Sbjct: 62 SKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLH 121
Query: 333 ALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS-PV 391
+L +V+ L + + RL+ TW L K K T+ +L+ L+ N++ R+ + L+ P
Sbjct: 122 SLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPS 181
Query: 392 IPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRH 439
IP++ + L DL + + N ++ + LR + +
Sbjct: 182 IPYLGIYLLDLIYIDSAYPASGSIMENEQRSNQMNNILRIIADLQVSC 229
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS
guanine nucleotide releasing FACT specific nucleotide
exchange factor; 2.20A {Mus musculus}
Length = 240
Score = 236 bits (604), Expect = 8e-76
Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 1/198 (0%)
Query: 243 SAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEI 302
SA E+A +TL D +F SI E + + T + + FN + ++ +EI
Sbjct: 5 SALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEI 64
Query: 303 LLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKK 362
+ ++ R + K + +A C+ N NA+ + ++ A+ RL TW K+ ++K
Sbjct: 65 IRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKS 124
Query: 363 TYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVV-DGLVNFEK 421
+L+ L+ + R+++ P +P++ + L DL F +G DGLVNF K
Sbjct: 125 LLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDGLVNFSK 184
Query: 422 MHMFAQTLRTLRYCRTRH 439
M M + +R +R +
Sbjct: 185 MRMISHIIREIRQFQQTT 202
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo
sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S*
1nvw_S* 1nvx_S* 1bkd_S
Length = 490
Score = 219 bits (560), Expect = 2e-66
Identities = 50/209 (23%), Positives = 98/209 (46%), Gaps = 6/209 (2%)
Query: 235 MDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEI 294
FDL T E+A +TL + DL+ ++ ELV + + + NL +R +
Sbjct: 213 ETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNL 272
Query: 295 QYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWD 354
W I+ +L +RV ++ ++I++ +E N N + V+ +++ V RL T++
Sbjct: 273 TLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFE 332
Query: 355 KLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVV- 413
++PS+ KK E L +++ Y + + P +PF + L ++ T +GN V+
Sbjct: 333 QIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLK 390
Query: 414 ---DGLVNFEKMHMFAQTLRTLRYCRTRH 439
L+NF K A+ ++ + +
Sbjct: 391 RHGKELINFSKRRKVAEITGEIQQYQNQP 419
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 225 bits (575), Expect = 4e-65
Identities = 50/209 (23%), Positives = 98/209 (46%), Gaps = 6/209 (2%)
Query: 235 MDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEI 294
FDL T E+A +TL + DL+ ++ ELV + + + NL +R +
Sbjct: 772 ETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNL 831
Query: 295 QYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWD 354
W I+ +L +RV ++ ++I++ +E N N + V+ +++ V RL T++
Sbjct: 832 TLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFE 891
Query: 355 KLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVV- 413
++PS+ KK E L +++ Y + + P +PF + L ++ T +GN V+
Sbjct: 892 QIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLK 949
Query: 414 ---DGLVNFEKMHMFAQTLRTLRYCRTRH 439
L+NF K A+ ++ + +
Sbjct: 950 RHGKELINFSKRRKVAEITGEIQQYQNQP 978
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase
exchange factor, focal-adhesio targeting domain,
signaling protein; 2.50A {Homo sapiens}
Length = 331
Score = 163 bits (413), Expect = 1e-46
Identities = 47/261 (18%), Positives = 88/261 (33%), Gaps = 29/261 (11%)
Query: 209 GRIFVSPKDHLDALTCISEQETYTEGMDF-------------DLETFSAKELAFHMTLFD 255
G+ F P + + + ++ D L A+ LA H+T D
Sbjct: 2 GKTFTVPIVEVTSSFNPATFQSLLIPRDNRPLEVGLLRKVKELLAEVDARTLARHVTKVD 61
Query: 256 WDLFWSIHEYELVYHTVGRHRFQQITAN------LDVFLRRFNEIQYWVITEILLVT-SL 308
+ + + + +G ++ L RF+ + + +IL T S
Sbjct: 62 CLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERFHTMSIMLAVDILGSTGSA 121
Query: 309 NKRVQILRKMIKLAAYCKE-YRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTEL 367
+R +L K I+LAA + N+ + AV+ L +SRL TW L + +
Sbjct: 122 EERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLEQTWVTLRQRHTEGAILY 181
Query: 368 EALIDPSKNHRAYRQAVSKLQSPVIPFMP---LLLKDLAFTHDGNKTVVDGLVNFEKMHM 424
E + P + L + P + LL+ + +G + E +
Sbjct: 182 EKKLKPFLKSLNEGKEGPPLSNTTFPHVLPLITLLESDSAPPEGPEPWGSTEHGVEVVLA 241
Query: 425 FAQTLRTL-----RYCRTRHL 440
+ RT+ Y +
Sbjct: 242 HLEAARTVAHHGGLYHTNAEV 262
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology
domain, GTPase exchange factor, signaling Pro; HET: POG;
2.40A {Homo sapiens}
Length = 333
Score = 161 bits (409), Expect = 5e-46
Identities = 39/208 (18%), Positives = 72/208 (34%), Gaps = 11/208 (5%)
Query: 239 LETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRH------RFQQITANLDVFLRRFN 292
K +A H+ D + + E + +G + R N
Sbjct: 44 FTNNDPKVIAQHVLSMDCRVARILGVSEEMRRNMGVSSGLELITLPHGHQLRLDIIERHN 103
Query: 293 EIQYWVITEILLVT-SLNKRVQILRKMIKLAAYCKE-YRNINALFAVLMGLSNVAVSRLS 350
+ + +IL T +L R L K+I++A K+ ++ + A++ L ++RL
Sbjct: 104 TMAIGIAVDILGCTGTLEDRAATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQITRLE 163
Query: 351 LTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNK 410
TW L + +T E + P + S P +PLL+ + +
Sbjct: 164 KTWTALRHQYTQTAILYEKQLKPFSK-LLHEGRESTCVPPNNVSVPLLMPLV-TLMERQA 221
Query: 411 TVVDGLVNFEKMHMFAQT-LRTLRYCRT 437
+G +EK + L L R
Sbjct: 222 VTFEGTDMWEKNDQSCEIMLNHLATARF 249
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Length = 104
Score = 127 bits (321), Expect = 6e-36
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 119 PPSGQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPS 178
S I VY +H++ +++ V++ A++I AEK+ +
Sbjct: 3 SGSSGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQ--------------YAEE 48
Query: 179 DLLLVEVKSTGERVVFRDNDLSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEG 234
DL LV + +GE+ + NDL I +L +GRI+V KD D L +E + G
Sbjct: 49 DLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKDLADTLNPFAENSGPSSG 104
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine
nucleotide exchange factor II, LINK-gefii, RA domain,
structural genomics; NMR {Homo sapiens}
Length = 120
Score = 125 bits (315), Expect = 6e-35
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 119 PPSGQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPS 178
S I RVY DH++ T+R ++A+ + I S EKL + +
Sbjct: 3 SGSSGDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAG--------RED 54
Query: 179 DLLLVEVKSTGERVVFRDNDLSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEG 234
L+LV V S+GE+V+ + + + TAL +N +F +D +AL + E+ + G
Sbjct: 55 SLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTRDSYEALVPLPEEIQVSPG 110
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 8e-09
Identities = 61/369 (16%), Positives = 105/369 (28%), Gaps = 119/369 (32%)
Query: 2 DFVRDATYHIVVLKLCSAKSFQCTFH----MD--------SSNHDKDFILSCKRS----- 44
D ++ + L + ++ S+ DKD++LS S
Sbjct: 186 DLIKFSAET---LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 45 VVQF----VFRWVSVIRHVVFDD--TGTMNFIQDLASEV---ESDSTMWSGLTEEASLMH 95
V+Q V + G Q L + V E+DS W
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS--WESFFVSVRKAI 300
Query: 96 HVMTHMKRYQDERAASAGQKWKLPPSGQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSA 155
V+ + G R C +P + I +
Sbjct: 301 TVLFFI--------------------G-----VR--------CYEAYPNTSLPPSILEDS 327
Query: 156 AEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDLSIPT----ALSL-NG- 209
E E + + L +S +L +V + V + N +P +SL NG
Sbjct: 328 LEN-NEGVPSPM-----LSIS--NLTQEQV----QDYVNKTNS-HLPAGKQVEISLVNGA 374
Query: 210 RIFV---SPKDHLDALTCISEQETYTEGMDFDLETFSAKELA-----------FH---MT 252
+ V P+ L L + G+D FS ++L FH +
Sbjct: 375 KNLVVSGPPQS-LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 253 ----LFDWDLF---WSIHEYEL---VYHTVGRHRFQQITANLDVFLRR--FNEIQYWV-- 298
L + DL S + ++ VY T + ++ ++ + W
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 299 ----ITEIL 303
T IL
Sbjct: 494 TQFKATHIL 502
Score = 51.6 bits (123), Expect = 4e-07
Identities = 45/237 (18%), Positives = 64/237 (27%), Gaps = 53/237 (22%)
Query: 202 PTAL---SLNGRIFVSPKDHLDAL----TCISEQETYTEGMDFDLETFSAKELAFHMTLF 254
P L SL + V A TEG D E + EL +
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 255 DWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEI-LLVTSLNKRVQ 313
V V + Q L++ L F E Y +I L L +
Sbjct: 68 -------------VSSLVEPSKVGQFDQVLNLCLTEF-ENCYLEGNDIHALAAKLLQEND 113
Query: 314 ILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYT-------- 365
++K K Y I A + S L + + + +
Sbjct: 114 T--TLVKTKELIKNY--ITARIMAKRPFDKKSNSAL---FRAVGEGNAQLVAIFGGQGNT 166
Query: 366 -----ELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFT-HDGNKTVVDGL 416
EL L ++ Y V +I F L +L T D K GL
Sbjct: 167 DDYFEELRDL------YQTYHVLV----GDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Score = 30.4 bits (68), Expect = 1.7
Identities = 49/285 (17%), Positives = 95/285 (33%), Gaps = 104/285 (36%)
Query: 152 KTS-AAEKLAEQIKTSAAEKLGLLVS------PSDLLLVEVKSTGERVVFRDNDLSIPTA 204
KTS AA+ + + + G + P +L + G+R+ R+N ++
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI--RENYSAMIFE 1694
Query: 205 LSLNGR-----------------IFVSPKDHLD-------ALTCISE---QETYTEGMDF 237
++G+ F S K L ALT + + ++ ++G+
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 238 DLETFSAKELAFHMTLFDWDLFWSIHEY----------------ELVYH----------- 270
TF A H S+ EY E+V++
Sbjct: 1755 ADATF-----AGH----------SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 271 -TVGRHRFQQITANLDVFLRRFNE--IQYWVITEILLVTSLNKRVQILRKMIKLAAY-CK 326
+GR + I N F++ +QY V+ + T V+I Y +
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQY-VVERVGKRT--GWLVEI-------VNYNVE 1849
Query: 327 --------EYRNINALFAVL--MGLSNVAVSRL--SLTWDKLPSK 359
+ R ++ + VL + L + + L SL+ +++
Sbjct: 1850 NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.001
Identities = 85/538 (15%), Positives = 168/538 (31%), Gaps = 124/538 (23%)
Query: 1 MDF---VRDATYHIVVLKLCSA--KSFQCTFHMDS-----SNHDKDFILSCKRSVVQ--F 48
MDF Y ++ A +F C D S + D I+ K +V
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 49 VFRWV-------SVIRHVVFDDTGTMNFIQD-LASEVESDSTMWSGLTEEASLMHHVMTH 100
+F W V + V F+ + +E S M E+ +++
Sbjct: 67 LF-WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 101 MKRYQDERA--ASAGQKW--KLPP-----------SGQPIIIFRVYCADHTF-CTLRFPV 144
+Y R ++ +L P SG+ + V C + C + F +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CLSYKVQCKMDFKI 184
Query: 145 --------NATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGER----- 191
N+ ++ +KL QI + + + L + +++ R
Sbjct: 185 FWLNLKNCNSPETVLE--MLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLKSK 241
Query: 192 ------VVFRD-NDLSIPTALSLNGRIFVSPKDH--LDALTCISEQETYTEGMDFDLETF 242
+V + + A +L+ +I ++ + D L S T +D T
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL---SAATTTHISLDHHSMTL 298
Query: 243 SAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQ--QITANLDVFLRRFNEIQYWVIT 300
+ E+ +L + +L + + + I ++ L + W
Sbjct: 299 TPDEV---KSLLL--KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW---DNW--- 347
Query: 301 EILLVTSLNKRVQI--LRKMIKLAAYC---KEYRNINALFAVLMGLSNVAVSRLSLTW-- 353
K V L +I+ + EYR + +V +++ LSL W
Sbjct: 348 ---------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 354 ----------DKLPSKS------KKTYTELEALIDPSKNHRAYRQAVSK--LQSPVIP-- 393
+KL S K++ + ++ K A+ + + IP
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 394 -----FMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRT--RHLGRPL 444
+P L ++H G+ + + + E+M +F R+ RH
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHH--LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Score = 38.3 bits (88), Expect = 0.005
Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 58/201 (28%)
Query: 263 HEYELVYHT-VGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLN-KRVQ-ILRKMI 319
H + + + T +++++ I L VF F V + + K VQ + + ++
Sbjct: 3 HHHHMDFETGEHQYQYKDI---LSVFEDAF-------------VDNFDCKDVQDMPKSIL 46
Query: 320 KLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTEL--EAL------- 370
+E +I + + AVS + L SK ++ + E L
Sbjct: 47 S----KEEIDHI-------IMSKD-AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 371 --------IDPSKNHRAYRQAVSKLQSPVIPFMPL----------LLKDLAFTHDGNKTV 412
PS R Y + +L + F L + L +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 413 VDGLVNFEKMHMFAQTLRTLR 433
+DG++ K + + +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYK 175
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.004
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 12/36 (33%)
Query: 381 RQAVSKLQSPVIPFMPLLLKD----LAFTHDGNKTV 412
+QA+ KLQ+ + + D LA T+
Sbjct: 19 KQALKKLQASLKLYAD----DSAPALAI----KATM 46
Score = 32.6 bits (73), Expect = 0.14
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 32/58 (55%)
Query: 157 EKLAEQIKTSAAEKL--GL-LVSPSDLLLVEVKSTGERVVFRDNDLSIPTALSLNGRI 211
EK + +K KL L L + D S P AL++ +
Sbjct: 18 EK--QALK-----KLQASLKLYAD--------------------D-SAP-ALAIKATM 46
Score = 29.5 bits (65), Expect = 1.2
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 38/60 (63%)
Query: 90 EASLMHHVMTHMKRYQDERAASAGQKWKLPPSGQPIIIFRVYCADHTFCTLRFPVNATAE 149
+ASL K Y D+ SA P+ + AT E
Sbjct: 26 QASL--------KLYADD---SA-------PA--------------------LAIKATME 47
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD;
HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1
d.133.1.1
Length = 788
Score = 36.8 bits (86), Expect = 0.015
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 155 AAEKLAEQIKTSAAEKLGLLVSPSDLLL----VEVKSTGERVV 193
AA + E++K A L + D+++ V V + +
Sbjct: 560 AASIVRERVKQLAGHLLE--AASEDIVIEDGLVHVAGVPAKGM 600
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD
FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1
d.133.1.1 PDB: 1sb3_A*
Length = 769
Score = 36.4 bits (85), Expect = 0.019
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 155 AAEKLAEQIKTSAAEKLGLLVSPSDLLL----VEVKSTGERVV 193
AAE+L + +AA+KL D+ + V + + +
Sbjct: 536 AAEELKGVLVKAAAKKLD--AREEDIEVIDEMFMVSGSQDPGL 576
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum,
molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
{Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1
PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Length = 809
Score = 36.4 bits (85), Expect = 0.019
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 155 AAEKLAEQIKTSAAEKLGLLVSPSDLLL----VEVKSTGERVV 193
AA K+ + + AA L V DL VK E+
Sbjct: 583 AARKIKAKAQMIAAHMLE--VHEGDLEWDVDRFRVKGLPEKFK 623
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase;
HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava}
SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Length = 803
Score = 36.2 bits (84), Expect = 0.023
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 155 AAEKLAEQIKTSAAEKLGLLVSPSDLLL----VEVKSTGERVV 193
AA K+ + + AA L V+ +DL +VK +
Sbjct: 577 AARKIHAKARKIAAHMLE--VNENDLDWEVDRFKVKGDDSKFK 617
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium
ligand, iron, iron-sulfur, metal-binding,
oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium
barkeri}
Length = 330
Score = 35.2 bits (82), Expect = 0.031
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 155 AAEKLAEQIKTSAAEKLGLLVSPSDLLL----VEVKSTGERVV 193
A + E + +AAEKL +P +L V + + ER +
Sbjct: 100 ACRQAKETLAKTAAEKLD--CAPEELSFRDNTVFITADPERSM 140
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Length = 100
Score = 29.9 bits (67), Expect = 0.46
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 18/100 (18%)
Query: 119 PPSGQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEK----------LAEQIKTSAA 168
SG+P ++ +VY D ++ ATA + ++ L E
Sbjct: 4 GSSGRPHVV-KVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHP---H 59
Query: 169 EKLGLLVSPSDLLLVEV----KSTGERVVFRDNDLSIPTA 204
L + + ++ R VFR N S P++
Sbjct: 60 LALERGLEDHESVVEVQAAWPVGGDSRFVFRKNFASGPSS 99
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 2.1
Identities = 32/183 (17%), Positives = 60/183 (32%), Gaps = 57/183 (31%)
Query: 59 VVFDDTGTMNFIQDLA-------SEVESDSTMWSGLTEEASLMHHVMTHMKRYQDERAAS 111
V+ D G + F+ +L E+ S + ++ E +L H V+ A +
Sbjct: 723 VMADLNGGLQFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVV------NGNSADA 776
Query: 112 AGQKWKLPPSGQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKL 171
A + ++ P A+ FP K +Q+K A +L
Sbjct: 777 AYAQVEIQPR-----------ANIQL---DFP------------ELKPYKQVKQIAPAEL 810
Query: 172 GLLVSPSDLLLV----EVKSTGE-RVVFR---DNDLSIPTALSL----------NGRIFV 213
L+ +++V EV G R + + S+ + + NG +
Sbjct: 811 EGLLDLERVIVVTGFAEVGPWGSARTRWEMEAFGEFSLEGCVEMAWIMGFISYHNGNLKG 870
Query: 214 SPK 216
P
Sbjct: 871 RPY 873
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose,
carbohydrate, pyrophosphorylase; 1.95A {Escherichia
coli}
Length = 302
Score = 29.4 bits (67), Expect = 2.4
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 7/25 (28%)
Query: 294 IQYWV-------ITEILLVTSLNKR 311
IQY V ITEI+LVT +K
Sbjct: 42 IQYVVNECIAAGITEIVLVTHSSKN 66
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear
protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Length = 425
Score = 29.5 bits (65), Expect = 2.4
Identities = 8/50 (16%), Positives = 21/50 (42%)
Query: 152 KTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDLSI 201
+ + + + +++G SP ++L + G+ VV + +I
Sbjct: 11 SSGLVPRGSHMASMTGGQQMGRGSSPYEILQSPGRKEGQIVVVKSPQGTI 60
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur,
oxidoreductase, purine metabolism, molybdenum cofactor,
hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter
capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Length = 777
Score = 29.5 bits (67), Expect = 2.6
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 18/79 (22%)
Query: 155 AAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDLSIPTA---------- 204
A E L ++ A + G + D++ +V
Sbjct: 543 ACETLRGRLAGFVAAREG--CAARDVIF-----DAGQVQASGKSWRFAEIVAAAYMARIS 595
Query: 205 LSLNGRIFVSPKDHLDALT 223
LS G + +PK D L
Sbjct: 596 LSATGF-YATPKLSWDRLR 613
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU
pyrophosphorylase, nucleotidyltransferase; HET: G1P;
2.65A {Sphingomonas elodea}
Length = 297
Score = 29.0 bits (66), Expect = 2.9
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 7/25 (28%)
Query: 294 IQYWV-------ITEILLVTSLNKR 311
IQY V I +++ VT K
Sbjct: 48 IQYAVDEAVEAGIEQMIFVTGRGKS 72
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 29.2 bits (64), Expect = 2.9
Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 4/173 (2%)
Query: 100 HMKRYQDE--RAASAGQKWKLPPSGQPIIIFRVYCADHTFCTLRFPVNA--TAEQIKTSA 155
+RY + A + + Q V CA ++ +N
Sbjct: 56 ACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRD 115
Query: 156 AEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDLSIPTALSLNGRIFVSP 215
+ + E+ TS+ E + S ++ +E + D S+ +
Sbjct: 116 SCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVNKHMVVDDSLKERCIDMHFKLYTS 175
Query: 216 KDHLDALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDLFWSIHEYELV 268
K+ L + S E+ +L F +D L + L
Sbjct: 176 KEELVKRSVSSTDESGRFVETTELYATDIAGAFFSAMHYDVSLVGTEPRERLT 228
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A
{Helicobacter pylori} PDB: 3juj_A*
Length = 281
Score = 29.0 bits (66), Expect = 3.4
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 7/25 (28%)
Query: 294 IQYWV-------ITEILLVTSLNKR 311
IQY V + +VT NKR
Sbjct: 36 IQYAVEEAMEAGCEVMAIVTGRNKR 60
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase,
nucleotidyltransferase, metabolism; HET: GUD; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 323
Score = 29.1 bits (66), Expect = 3.4
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 7/25 (28%)
Query: 294 IQYWV-------ITEILLVTSLNKR 311
I+ T + ++T+ NK
Sbjct: 46 IELIAAEAAELGATRLAIITAPNKA 70
>1oz7_B Echicetin B-chain; platelet aggregation, dimer, toxin; 2.40A
{Echis carinatus} SCOP: d.169.1.1
Length = 123
Score = 26.9 bits (60), Expect = 6.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 59 VVFDDTGTMNFIQDLASEVESDSTMWSGLT 88
V F ++ ++F+ LA + + +W GLT
Sbjct: 40 VSFRNSKEVDFVISLAFPMLKNDLVWIGLT 69
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP:
c.56.5.4 d.58.19.1
Length = 470
Score = 28.4 bits (63), Expect = 6.6
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 6/95 (6%)
Query: 104 YQDERAASAGQKWKLPPSGQPII---IFRVYCADHTFCTL--RFPVNATAEQIKTSAAEK 158
++D G G +F A R+P + + +K
Sbjct: 308 HEDFYGKKLGIFHHDDLMGDLASSPSMFDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDK 367
Query: 159 LAEQIK-TSAAEKLGLLVSPSDLLLVEVKSTGERV 192
+ + T + V SD ++ + E+
Sbjct: 368 FSGILDVTYNGFEEPHYVPGSDPMVQTLLKVYEKQ 402
>3vpp_A C-type lectin domain family 9 member A; dendritic cell, C-type
lectin-like domain, membrane, immune; 1.64A {Homo
sapiens}
Length = 132
Score = 27.0 bits (60), Expect = 7.5
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 59 VVFDDTGTMNFIQDLASEVESDSTMWSGLT 88
+ + M+FI +++ W GL+
Sbjct: 40 LQIESKEEMDFITGSLRKIKGSYDYWVGLS 69
>1j34_B Coagulation factor IX-binding protein B chain; magnesium ION,
calcium ION, GLA domain, protein binding/blood clotting
complex; HET: CGU; 1.55A {Trimeresurus flavoviridis}
SCOP: d.169.1.1 PDB: 1bj3_B 1ixx_B* 1j35_B* 1x2t_B*
1x2w_B 1wt9_B 1iod_B 1y17_B
Length = 123
Score = 27.0 bits (60), Expect = 7.7
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 59 VVFDDTGTMNFIQDLASEVESDSTMWSGLT 88
V F + +F+ LA + S W GL+
Sbjct: 40 VSFQSSEEADFVVKLAFQTFGHSIFWMGLS 69
>1fvu_B Botrocetin beta chain; VON WILLBRAND factor modulator, C-type
lectin, metal- binding, loop exchanged dimer, toxin;
1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_C
1u0n_C 1u0o_B
Length = 125
Score = 26.6 bits (59), Expect = 7.9
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 59 VVFDDTGTMNFIQDLASEVESDSTMWSGLT 88
V F +F++ L SE+ +W GL+
Sbjct: 40 VSFQSKEEADFVRSLTSEMLKGDVVWIGLS 69
>4de9_A Putative transcriptional regulator YWTF; possible role in WALL
techoic acid synthesis, membrane prote; HET: VTP; 1.79A
{Bacillus subtilis} PDB: 3mej_A*
Length = 286
Score = 27.7 bits (62), Expect = 8.8
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 9/57 (15%)
Query: 401 DLAFTHDGNKTVVDGLVNFEK--MHMFAQTLRTLRYCRTRH----LGRPLARQRFVV 451
K G V +K + + L Y RTR L R RQ V+
Sbjct: 138 KSDKVIQQIKKDTKGKVVLQKGTHTLDGEEA--LAYVRTRKADSDLLR-GQRQMEVL 191
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB:
2vrp_B
Length = 146
Score = 27.0 bits (60), Expect = 9.1
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 59 VVFDDTGTMNFIQDLASEVESDSTMWSGLT 88
V F +F+ L + +W GL+
Sbjct: 63 VSFQSAEEADFVVKLTRPRLKANLVWMGLS 92
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit
alpha isoform; PI3KCA, PI3K, PIK3R1,
phosphatidilynositol 3,4,5- triphosphate, wortmannin,
H1047R, ATP-binding, disease mutation, kinase; HET: KWT;
2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Length = 1091
Score = 27.9 bits (61), Expect = 9.7
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 20/118 (16%)
Query: 98 MTHMKRYQDERAASAGQKWKL---PPSGQPIIIFRVYCADHTFC-----------TLRFP 143
M++ + S+G+ W + PP ++ ++ TL
Sbjct: 1 MSYYHHHHHHDYPSSGELWGIHLMPPRPSSGELWGIHLMPPRILVECLLPNGMIVTLECL 60
Query: 144 VNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDLSI 201
AT IK +L ++ + + LL S + V V ER F D +
Sbjct: 61 REATLITIK----HELFKEARKYPLHQ--LLQDESSYIFVSVTQEAEREEFFDETRRL 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.135 0.406
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,076,578
Number of extensions: 423570
Number of successful extensions: 1067
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1040
Number of HSP's successfully gapped: 47
Length of query: 461
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 364
Effective length of database: 3,993,456
Effective search space: 1453617984
Effective search space used: 1453617984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.5 bits)