RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15588
         (461 letters)



>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 481

 Score =  183 bits (464), Expect = 6e-53
 Identities = 50/203 (24%), Positives = 96/203 (47%), Gaps = 6/203 (2%)

Query: 237 FDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQY 296
           FDL T    E+A  +TL + DL+ ++   ELV     +   +  + NL   +R    +  
Sbjct: 209 FDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTL 268

Query: 297 WVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKL 356
           W    I+   +L +RV ++ ++I++    +E  N N +  V+  +++  V RL  T++++
Sbjct: 269 WFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI 328

Query: 357 PSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVV--- 413
           PS+ KK   E   L     +++ Y   +  +  P +PF  + L ++  T +GN  V+   
Sbjct: 329 PSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRH 386

Query: 414 -DGLVNFEKMHMFAQTLRTLRYC 435
              L+NF K    A+    ++  
Sbjct: 387 GKELINFSKRRKVAEITGEIQQY 409


>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5,
           RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score =  137 bits (347), Expect = 4e-40
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 14/115 (12%)

Query: 120 PSGQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSD 179
            S    I   VY  +H++ +++  V++ A++I    AEK+                +  D
Sbjct: 4   GSSGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQ--------------YAEED 49

Query: 180 LLLVEVKSTGERVVFRDNDLSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEG 234
           L LV +  +GE+   + NDL I  +L  +GRI+V  KD  D L   +E    + G
Sbjct: 50  LALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKDLADTLNPFAENSGPSSG 104


>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 100

 Score = 26.4 bits (58), Expect = 2.8
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 14/96 (14%)

Query: 121 SGQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQ-------IKTSAAEKLGL 173
           SG+P ++ +VY  D    ++     ATA  +     ++           ++      L  
Sbjct: 6   SGRPHVV-KVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALER 64

Query: 174 LVSPSDLLLVEVKSTGE-----RVVFRDNDLSIPTA 204
            +   + ++ EV++        R VFR N  S P++
Sbjct: 65  GLEDHESVV-EVQAAWPVGGDSRFVFRKNFASGPSS 99


>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 201

 Score = 27.4 bits (61), Expect = 2.9
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 144 VNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEV 185
           + A  E+++  A  ++ + +K    E+    + P  L  VEV
Sbjct: 109 LEAFKERVRGRAKLRIEKAMKEYEEEERKKRLGPGGLDPVEV 150


>d1lshb_ f.7.1.1 (B:) Lipovitellin-phosvitin complex; beta-sheet
           shell regions {Lamprey (Ichthyomyzon unicuspis) [TaxId:
           30308]}
          Length = 174

 Score = 27.1 bits (60), Expect = 3.8
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 318 MIKLA--AYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTEL 367
              +     C++YR +       +  S+ A  R+ + W +LPS  ++    L
Sbjct: 65  KAAIGWGKNCQQYRAMLEASTGNLQ-SHPAA-RVDIKWGRLPSSLQRAKNAL 114


>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus
           subtilis [TaxId: 1423]}
          Length = 392

 Score = 27.1 bits (59), Expect = 5.5
 Identities = 16/44 (36%), Positives = 18/44 (40%)

Query: 152 KTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFR 195
           KT   E L E    + A KLGL  S S L   E+       VF 
Sbjct: 1   KTPLYETLNESSAVALAVKLGLFPSKSTLTCQEIGDGNLNYVFH 44


>d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus
           delbrueckii [TaxId: 1584]}
          Length = 196

 Score = 26.4 bits (57), Expect = 6.2
 Identities = 3/32 (9%), Positives = 11/32 (34%)

Query: 138 CTLRFPVNATAEQIKTSAAEKLAEQIKTSAAE 169
             +R+P     + +     +K +  +  +   
Sbjct: 161 NNVRYPQGTDPDTMIKQVLDKFSGILDVTYNG 192


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,714,460
Number of extensions: 78766
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 11
Length of query: 461
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 373
Effective length of database: 1,199,356
Effective search space: 447359788
Effective search space used: 447359788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.5 bits)