BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15589
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 164 bits (414), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 74/97 (76%), Positives = 90/97 (92%)
Query: 48 MFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNC 107
+F+QG+EG SWYII++GSV+VVIYGKG V +L+ G+DFGKLALVN+APRAA+IV REDNC
Sbjct: 67 LFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNC 126
Query: 108 HFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLERM 144
HFLRVDK+DF RI+RDVEANTVRLKEH +DVLVLE++
Sbjct: 127 HFLRVDKEDFNRILRDVEANTVRLKEHDQDVLVLEKV 163
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 163 bits (412), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 74/97 (76%), Positives = 90/97 (92%)
Query: 48 MFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNC 107
+F+QG+EG SWYII++GSV+VVIYGKG V +L+ G+DFGKLALVN+APRAA+IV REDNC
Sbjct: 372 LFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNC 431
Query: 108 HFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLERM 144
HFLRVDK+DF RI+RDVEANTVRLKEH +DVLVLE++
Sbjct: 432 HFLRVDKEDFNRILRDVEANTVRLKEHDQDVLVLEKV 468
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 8/78 (10%)
Query: 46 MTMFHQGDEGKSWYIIIQGSVDVVIYGKGC------VTSLYAGEDFGKLALVNNAPRAAT 99
+T+F QGD G +WY ++ GS+DV + + +L G FG+ ++++N PR AT
Sbjct: 74 ITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHAT 132
Query: 100 IVTREDNCHFLRVDKDDF 117
IVTRE + LR++++DF
Sbjct: 133 IVTRE-SSELLRIEQEDF 149
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 3 RAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLM 46
RAG +LR +L+ +RDRK R+C G+ELVDW++
Sbjct: 193 RAGKILRIAILSRAPHMIRDRKYH--LKTYRQCCVGTELVDWMI 234
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/97 (76%), Positives = 90/97 (92%)
Query: 48 MFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNC 107
+F+QG+EG SWYII++GSV+VVIYGKG V +L+ G+DFGKLALVN+APRAA+IV REDNC
Sbjct: 372 LFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNC 431
Query: 108 HFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLERM 144
HFLRVDK+DF RI+RDVEANTVRLKEH +DVLVLE++
Sbjct: 432 HFLRVDKEDFNRILRDVEANTVRLKEHDQDVLVLEKV 468
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 8/78 (10%)
Query: 46 MTMFHQGDEGKSWYIIIQGSVDVVIYGKGC------VTSLYAGEDFGKLALVNNAPRAAT 99
+T+F QGD G +WY ++ GS+DV + + +L G FG+ ++++N PR AT
Sbjct: 74 ITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHAT 132
Query: 100 IVTREDNCHFLRVDKDDF 117
IVTRE + LR++++DF
Sbjct: 133 IVTRE-SSELLRIEQEDF 149
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 3 RAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLM 46
RAG +LR +L+ +RDRK R+C G+ELVDW++
Sbjct: 193 RAGKILRIAILSRAPHMIRDRKYH--LKTYRQCCVGTELVDWMI 234
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 159 bits (401), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 73/97 (75%), Positives = 89/97 (91%)
Query: 48 MFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNC 107
+F+QG+EG SWYII++GSV+VVIYGKG V +L+ G+DFGKLALVN+APRAA+IV REDNC
Sbjct: 372 LFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNC 431
Query: 108 HFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLERM 144
HFLRVDK+D RI+RDVEANTVRLKEH +DVLVLE++
Sbjct: 432 HFLRVDKEDGNRILRDVEANTVRLKEHDQDVLVLEKV 468
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 8/78 (10%)
Query: 46 MTMFHQGDEGKSWYIIIQGSVDVVIYGKGC------VTSLYAGEDFGKLALVNNAPRAAT 99
+T+F QGD G +WY ++ GS+DV + + +L G FG+ ++++N PR AT
Sbjct: 74 ITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHAT 132
Query: 100 IVTREDNCHFLRVDKDDF 117
IVTRE + LR++++DF
Sbjct: 133 IVTRE-SSELLRIEQEDF 149
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 3 RAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLM 46
RAG +LR +L+ +RDRK R+C G+ELVDW++
Sbjct: 193 RAGKILRIAILSRAPHMIRDRKYH--LKTYRQCCVGTELVDWMI 234
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
T+ QG+EG ++Y++ QG VDV + G+ VT++ G FG+LAL+ PRAAT+ + D
Sbjct: 163 TVIQQGNEGDNFYVVDQGEVDVYVNGE-WVTNISEGGSFGELALIYGTPRAATVKAKTD- 220
Query: 107 CHFLRVDKDDFIRIM 121
+D+D + RI+
Sbjct: 221 LKLWGIDRDSYRRIL 235
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 51 QGDEGKSWYIIIQGSVDVVIYGKGC-----VTSLYAGEDFGKLALVNNAPRAATIVTRED 105
QG+ G +YII +G+ V+ V L + FG++AL+ N PRAAT+V R
Sbjct: 285 QGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVAR-G 343
Query: 106 NCHFLRVDKDDFIRIM 121
+++D+ F R++
Sbjct: 344 PLKCVKLDRPRFERVL 359
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
T+ QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ PRAAT+ + N
Sbjct: 78 TVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPRAATVKAKT-N 135
Query: 107 CHFLRVDKDDFIRIM 121
+D+D + RI+
Sbjct: 136 VKLWGIDRDSYRRIL 150
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
T+ QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ PRAAT+ + N
Sbjct: 71 TVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPRAATVKAKT-N 128
Query: 107 CHFLRVDKDDFIRIM 121
+D+D + RI+
Sbjct: 129 VKLWGIDRDSYRRIL 143
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
T+ QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ PRAAT+ + N
Sbjct: 72 TVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPRAATVKAK-TN 129
Query: 107 CHFLRVDKDDFIRIM 121
+D+D + RI+
Sbjct: 130 VKLWGIDRDSYRRIL 144
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 51 QGDEGKSWYIIIQGSVDVVIYGKGC-----VTSLYAGEDFGKLALVNNAPRAATIVTRED 105
QG+ G ++II++GS V+ V L + FG++AL+ N P+AAT+V R
Sbjct: 194 QGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVAR-G 252
Query: 106 NCHFLRVDKDDFIRIM 121
+++D+ F R++
Sbjct: 253 PLKCVKLDRPRFERVL 268
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
T+ QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ PRAAT+ + N
Sbjct: 70 TVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPRAATVKAK-TN 127
Query: 107 CHFLRVDKDDFIRIM 121
+D+D + RI+
Sbjct: 128 VKLWGIDRDSYRRIL 142
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 51 QGDEGKSWYIIIQGSVDVVIYGKGC-----VTSLYAGEDFGKLALVNNAPRAATIVTRED 105
QG+ G ++II++GS V+ V L + FG++AL+ N PRAAT+V R
Sbjct: 192 QGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVAR-G 250
Query: 106 NCHFLRVDKDDFIRIM 121
+++D+ F R++
Sbjct: 251 PLKCVKLDRPRFERVL 266
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
T+ QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ PRAAT+ + N
Sbjct: 68 TVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPRAATVKAK-TN 125
Query: 107 CHFLRVDKDDFIRIM 121
+D+D + RI+
Sbjct: 126 VKLWGIDRDSYRRIL 140
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 51 QGDEGKSWYIIIQGSVDVVIYGKGC-----VTSLYAGEDFGKLALVNNAPRAATIVTRED 105
QG+ G ++II++GS V+ V L + FG++AL+ N PRAAT+V R
Sbjct: 190 QGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVAR-G 248
Query: 106 NCHFLRVDKDDFIRIM 121
+++D+ F R++
Sbjct: 249 PLKCVKLDRPRFERVL 264
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
T+ QGD+G +Y++ +G+VD + V S G FG+LAL+ N+PRAAT+V D
Sbjct: 40 TIIKQGDQGDYFYVVEKGTVDFYV-NDNKVNSSGPGSSFGELALMYNSPRAATVVATSD- 97
Query: 107 CHFLRVDKDDFIRIM 121
C +D+ F +I+
Sbjct: 98 CLLWALDRLTFRKIL 112
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 38/55 (69%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIV 101
T+ +GD+G+++Y+I G+VDV G+G + L + FG++AL+N+ PR AT+
Sbjct: 158 TIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLPRQATVT 212
>pdb|2D93|A Chain A, Solution Structure Of The Cnmp_binding Domain Of Human Rap
Guanine Nucleotide Exchange Factor 6
Length = 134
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 48 MFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNC 107
+ G E SWY+I+ G+V++ + G V +L+ G FG ++ + T+ D+C
Sbjct: 51 ILEDGQELDSWYVILNGTVEIS-HPDGKVENLFMGNSFGITPTLDKQYMHGIVRTKVDDC 109
Query: 108 HFLRVDKDDFIRIMRDVEAN 127
F+ + + D+ RI+ VE +
Sbjct: 110 QFVCIAQQDYWRILNHVEKS 129
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 48 MFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAPRAATIVT 102
+ QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+ N PRAATI
Sbjct: 72 VIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITA 129
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 48 MFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAPRAATIVT 102
+ QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+ N PRAATI
Sbjct: 78 VIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITA 135
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 48 MFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAPRAATI 100
+ QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+ N PRAATI
Sbjct: 68 VIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATI 123
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 48 MFHQGDEGKSWYIIIQGSVDVVIYGKGC----------VTSLYAGEDFGKLALVNNAPRA 97
+ QGD S++I+ G V + + KG + G+ FG+LALV N PRA
Sbjct: 190 IIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQYFGELALVTNKPRA 249
Query: 98 AT 99
A+
Sbjct: 250 AS 251
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 51 QGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAPRAATIVT 102
QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+ N P+AATI
Sbjct: 182 QGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPKAATITA 236
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 51 QGDEGKSWYIIIQGSVDVVIYGKGC----------VTSLYAGEDFGKLALVNNAPRAAT 99
QGD S++I+ G V + + KG + + G+ FG+LALV N PRAA+
Sbjct: 304 QGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRAAS 362
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 51 QGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGED---FGKLALVNNAPRAATIVT 102
QGD+G ++Y+I +G+ D+++ S+ ++ FG+LAL+ N PRAATI+
Sbjct: 75 QGDDGDNFYVIERGTYDILVTKDNQTRSVGQYDNRGSFGELALMYNTPRAATIIA 129
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 11/60 (18%)
Query: 51 QGDEGKSWYIIIQGSVDVVIYGKGC-----------VTSLYAGEDFGKLALVNNAPRAAT 99
QG++ S+YII G V ++I K + + G+ FG+LALV N PRAA+
Sbjct: 197 QGEKADSFYIIESGEVSILIRSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKPRAAS 256
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 51 QGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAPRAATIVT 102
QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+ N P+AATI
Sbjct: 182 QGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPKAATITA 236
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 51 QGDEGKSWYIIIQGSVDVVIYGKGC----------VTSLYAGEDFGKLALVNNAPRAAT 99
QGD S++I+ G V + + KG + + G+ FG+LALV N PRAA+
Sbjct: 304 QGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRAAS 362
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAPRAATIVT 102
+F+QGD G++ Y++ G V + G + L GE FG+++L++ R+A+ V
Sbjct: 32 PIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERSASAVA 91
Query: 103 REDNCHFLRVDKDDFIRIMR 122
ED L + ++D++ ++R
Sbjct: 92 VEDT-ELLALFREDYLALIR 110
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 52 GDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLR 111
G+ G + +++GSV V L G FG++AL++ PR+AT V+ L
Sbjct: 53 GEPGDRMFFVVEGSVSVATPNP---VELGPGAFFGEMALISGEPRSAT-VSAATTVSLLS 108
Query: 112 VDKDDF 117
+ DF
Sbjct: 109 LHSADF 114
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 52 GDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLR 111
G+ G + +++GSV V L G FG++AL++ PR+AT V+ L
Sbjct: 51 GEPGDRMFFVVEGSVSVATPNP---VELGPGAFFGEMALISGEPRSAT-VSAATTVSLLS 106
Query: 112 VDKDDF 117
+ DF
Sbjct: 107 LHSADF 112
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 52 GDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLR 111
G+ G + +++GSV V L G FG++AL++ PR+AT V+ L
Sbjct: 49 GEPGDRMFFVVEGSVSVATPNP---VELGPGAFFGEMALISGEPRSAT-VSAATTVSLLS 104
Query: 112 VDKDDF 117
+ DF
Sbjct: 105 LHSADF 110
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 52 GDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLR 111
G+ G + +++GSV V L G FG++AL++ PR+AT V+ L
Sbjct: 49 GEPGDRMFFVVEGSVSVATPNP---VELGPGAFFGEMALISGEPRSAT-VSAATTVSLLS 104
Query: 112 VDKDDF 117
+ DF
Sbjct: 105 LHSADF 110
>pdb|3FWE|A Chain A, Crystal Structure Of The Apo D138l Cap Mutant
pdb|3FWE|B Chain B, Crystal Structure Of The Apo D138l Cap Mutant
Length = 210
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRAATIVT 102
T+ HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L + V
Sbjct: 29 TLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR 88
Query: 103 REDNCHFLRVDKDDFIRIMR 122
+ C + F ++++
Sbjct: 89 AKTACEVAEISYKKFRQLIQ 108
>pdb|1I6X|A Chain A, Structure Of A Star Mutant Crp-Camp At 2.2 A
pdb|1I6X|B Chain B, Structure Of A Star Mutant Crp-Camp At 2.2 A
Length = 209
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLYAGEDF-GKLALVNNAPRAATIVT 102
T+ HQG++ ++ Y I++GSV V+I GK + S DF G+L L + V
Sbjct: 28 TLIHQGEKAETLYYIVKGSVAVLIKHEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR 87
Query: 103 REDNCHFLRVDKDDFIRIMR 122
+ C + F ++++
Sbjct: 88 AKTACEVAEISYKKFRQLIQ 107
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 52 GDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLR 111
G+ G + +++GSV V L G FG++AL++ PR+AT V+ L
Sbjct: 266 GEPGDRMFFVVEGSVSVATPNP---VELGPGAFFGEMALISGEPRSAT-VSAATTVSLLS 321
Query: 112 VDKDDF 117
+ DF
Sbjct: 322 LHSADF 327
>pdb|1RUN|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUN|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1LB2|A Chain A, Structure Of The E. Coli Alpha C-Terminal Domain Of Rna
Polymerase In Complex With Cap And Dna
pdb|1I5Z|A Chain A, Structure Of Crp-Camp At 1.9 A
pdb|1I5Z|B Chain B, Structure Of Crp-Camp At 1.9 A
pdb|1ZRC|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRC|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRD|A Chain A, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRD|B Chain B, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRE|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRE|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRF|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|1ZRF|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|2GZW|A Chain A, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|B Chain B, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|C Chain C, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|D Chain D, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2WC2|A Chain A, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|2WC2|B Chain B, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|3IYD|G Chain G, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3IYD|H Chain H, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3N4M|A Chain A, E. Coli Rna Polymerase Alpha Subunit C-Terminal Domain In
Complex With Cap And Dna
Length = 209
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRAATIVT 102
T+ HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L + V
Sbjct: 28 TLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR 87
Query: 103 REDNCHFLRVDKDDFIRIMR 122
+ C + F ++++
Sbjct: 88 AKTACEVAEISYKKFRQLIQ 107
>pdb|2CGP|A Chain A, Catabolite Gene Activator ProteinDNA COMPLEX,
ADENOSINE-3', 5'-Cyclic-Monophosphate
pdb|1G6N|A Chain A, 2.1 Angstrom Structure Of Cap-Camp
pdb|1G6N|B Chain B, 2.1 Angstrom Structure Of Cap-Camp
pdb|3HIF|A Chain A, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|B Chain B, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|C Chain C, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|D Chain D, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|E Chain E, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|F Chain F, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3RYP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRAATIVT 102
T+ HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L + V
Sbjct: 29 TLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR 88
Query: 103 REDNCHFLRVDKDDFIRIMR 122
+ C + F ++++
Sbjct: 89 AKTACEVAEISYKKFRQLIQ 108
>pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A
pdb|1HW5|B Chain B, The CapCRP VARIANT T127LS128A
Length = 210
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRAATIVT 102
T+ HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L + V
Sbjct: 29 TLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR 88
Query: 103 REDNCHFLRVDKDDFIRIMR 122
+ C + F ++++
Sbjct: 89 AKTACEVAEISYKKFRQLIQ 108
>pdb|1CGP|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1CGP|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
Length = 205
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRAATIVT 102
T+ HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L + V
Sbjct: 28 TLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR 87
Query: 103 REDNCHFLRVDKDDFIRIMR 122
+ C + F ++++
Sbjct: 88 AKTACEVAEISYKKFRQLIQ 107
>pdb|1RUO|A Chain A, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUO|B Chain B, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
Length = 209
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRAATIVT 102
T+ HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L + V
Sbjct: 28 TLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR 87
Query: 103 REDNCHFLRVDKDDFIRIMR 122
+ C + F ++++
Sbjct: 88 AKTACEVAEISYKKFRQLIQ 107
>pdb|1O3Q|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3R|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|B Chain B, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRAATIVT 102
T+ HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L + V
Sbjct: 21 TLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR 80
Query: 103 REDNCHFLRVDKDDFIRIMR 122
+ C + F ++++
Sbjct: 81 AKTACEVAEISYKKFRQLIQ 100
>pdb|1O3S|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRAATIVT 102
T+ HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L + V
Sbjct: 21 TLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR 80
Query: 103 REDNCHFLRVDKDDFIRIMR 122
+ C + F ++++
Sbjct: 81 AKTACEVAEISYKKFRQLIQ 100
>pdb|3KCC|A Chain A, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
pdb|3KCC|B Chain B, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
Length = 260
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRAATIVT 102
T+ HQG++ ++ Y I++GSV V+I GK + S L G+ G+L L + V
Sbjct: 79 TLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR 138
Query: 103 REDNCHFLRVDKDDFIRIMR 122
+ C + F ++++
Sbjct: 139 AKTACEVAEISYKKFRQLIQ 158
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 52 GDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLR 111
G+ G + +++GSV V L G FG++AL++ P +AT V+ L
Sbjct: 51 GEPGDRMFFVVEGSVSVATPNP---VELGPGAFFGEMALISGEPESAT-VSAATTVSLLS 106
Query: 112 VDKDDF 117
+ DF
Sbjct: 107 LHSADF 112
>pdb|2PQQ|A Chain A, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|B Chain B, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|C Chain C, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|D Chain D, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
Length = 149
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPRAAT 99
T+FH+GD G Y++ +G V + + + + E G+L+L + PR AT
Sbjct: 38 TLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENXLAVVGPSELIGELSLFDPGPRTAT 94
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDV---VIYGKGCVTSLYAGED-FGKLALVNNAPRAATIVT 102
T+F +G+ G YIII G V + G+ + ++ D FG+L++ + PR ++ T
Sbjct: 36 TVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATT 95
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDV---VIYGKGCVTSLYAGED-FGKLALVNNAPRAATIVT 102
T+F +G+ G YIII G V + G+ + ++ D FG+L++ + PR ++ T
Sbjct: 37 TVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATT 96
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDV---VIYGKGCVTSLYAGED-FGKLALVNNAPRAATIVT 102
T+F +G+ G YIII G V + G+ + ++ D FG+L++ + PR ++ T
Sbjct: 39 TVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATT 98
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDV---VIYGKGCVTSLYAGED-FGKLALVNNAPRAATIVT 102
T+F +G+ G YIII G V + G+ + ++ D FG+L++ + PR ++ T
Sbjct: 61 TVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATT 120
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDV---VIYGKGCVTSLYAGED-FGKLALVNNAPRAATIVT 102
T+F +G+ G YIII G V + G+ + ++ D FG+L++ + PR ++ T
Sbjct: 61 TVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIXGPSDMFGELSIFDPGPRTSSATT 120
>pdb|3QOP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3QOP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIY---GKGCVT-SLYAGEDFGKLALVNNAPRAATIVT 102
T+ HQG++ ++ Y I++GSV V+I GK + L G+ G+L L + V
Sbjct: 29 TLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILFYLNQGDFIGELGLFEEGQERSAWVR 88
Query: 103 REDNCHFLRVDKDDFIRIMR 122
+ C + F ++++
Sbjct: 89 AKTACEVAEISYKKFRQLIQ 108
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 48 MFHQGDEGKSWYIIIQGSVDVVIYG-KGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
+ +GD G Y++ G V+V G K C ++ G+ FG+LA++ N R AT+ T N
Sbjct: 57 IIKEGDVGSLVYVMEDGKVEVTKEGVKLC--TMGPGKVFGELAILYNCTRTATVKTLV-N 113
Query: 107 CHFLRVDKDDFIRIM 121
+D+ F IM
Sbjct: 114 VKLWAIDRQCFQTIM 128
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 48 MFHQGDEGKSWYIIIQGSVDVVIYG-KGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
+ +GD G Y++ G V+V G K C ++ G+ FG+LA++ N R AT+ T N
Sbjct: 73 IIKEGDVGSLVYVMEDGKVEVTKEGVKLC--TMGPGKVFGELAILYNCTRTATVKTLV-N 129
Query: 107 CHFLRVDKDDFIRIM 121
+D+ F IM
Sbjct: 130 VKLWAIDRQCFQTIM 144
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 48 MFHQGDEGKSWYIIIQGSVDVVIYGKG-----CVTSLYAGEDFGKLALVNNAPRAATIVT 102
+ QG G +++II +G V+V + +L G+ FG+ AL R A ++
Sbjct: 191 IIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVIA 250
Query: 103 RED-NCHFLRVDKDDF 117
E C L +D+D F
Sbjct: 251 AEAVTC--LVIDRDSF 264
>pdb|4AVC|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVC|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 48 MFHQGDEGKSWYIIIQGSVDVVIYGK---GCVTSLYAGEDFGKLALVNNAPRAATIVTRE 104
+ QG+ S+ +I GS +V G + G G++AL+ ++PR+AT+ T E
Sbjct: 47 LLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGXIVGEIALLRDSPRSATVTTIE 106
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 32.7 bits (73), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 52 GDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLR 111
G+ G + +++GSV V L G FG++AL++ P +AT V+ L
Sbjct: 51 GEPGDRMFFVVEGSVSVATPNP---VELGPGAFFGEMALISGEPWSAT-VSAATTVSLLS 106
Query: 112 VDKDDF 117
+ DF
Sbjct: 107 LHSADF 112
>pdb|4AVA|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 From Mycobacterium Tuberculosis
pdb|4AVB|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVB|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 48 MFHQGDEGKSWYIIIQGSVDVVIYGK---GCVTSLYAGEDFGKLALVNNAPRAATIVTRE 104
+ QG+ S+ +I GS +V G + G G++AL+ ++PR+AT+ T E
Sbjct: 47 LLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPRSATVTTIE 106
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 32.7 bits (73), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPRAATIV 101
T+F +G+ G YII G V + + + +T + + FG+L++ + PR ++ V
Sbjct: 59 TIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAV 117
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 50 HQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHF 109
+G G + I QG VD+++ TSL G FG++ L+ R A++ E C
Sbjct: 107 QEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLTRERRVASVKC-ETYCTL 165
Query: 110 LRVDKDDFIRIMRDVEANTVRLKE 133
+ F +++ + A ++E
Sbjct: 166 FSLSVQHFNQVLDEFPAMRKTMEE 189
>pdb|1J03|A Chain A, Solution Structure Of A Putative Steroid-Binding Protein
From Arabidopsis
Length = 102
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 40 ELVDWLMTMFHQGDEGKSWYIIIQGSV-DVV----IYGKGCVTSLYAGED 84
E ++ ++ DE K Y+ I+G V DV YG G S++AG+D
Sbjct: 4 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKD 53
>pdb|1T0G|A Chain A, Hypothetical Protein At2g24940.1 From Arabidopsis
Thaliana Has A Cytochrome B5 Like Fold
Length = 109
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 40 ELVDWLMTMFHQGDEGKSWYIIIQGSV-DVV----IYGKGCVTSLYAGED 84
E ++ ++ DE K Y+ I+G V DV YG G S++AG+D
Sbjct: 11 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKD 60
>pdb|4AM1|A Chain A, Crystal Structure Of The Marine Crustacean Decapod Shrimp
(Litopenaeus Vannamei) Arginine Kinase In The Absence Of
Substrate Or Ligands
Length = 356
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSV 66
+L+ L + L+D+KTS G T+ SG E +D + ++ E Y +
Sbjct: 26 LLKKYLTKEVFDKLKDKKTSLGATLLDVIQSGVENLDSGVGIYAPDAEA---YTLFAPLF 82
Query: 67 DVVI--YGKGC-VTSLYAGEDFGKL-ALVNNAPRAATIVTREDNC 107
D +I Y G T + +DFG + + VN P +++ C
Sbjct: 83 DPIIEDYHVGFKQTDKHPNKDFGDVNSFVNVDPEGKFVISTRVRC 127
>pdb|4AKK|A Chain A, Structure Of The Nasr Transcription Antiterminator
pdb|4AKK|B Chain B, Structure Of The Nasr Transcription Antiterminator
Length = 423
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 26 SGGRTIARRCASGSELVDWLMTMFH 50
SGGR A C +G+ LVD +T F+
Sbjct: 86 SGGRLYAAECRAGAALVDEQLTRFY 110
>pdb|2OZ6|A Chain A, Crystal Structure Of Virulence Factor Regulator From
Pseudomonas Aeruginosa In Complex With Camp
Length = 207
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNN 93
T+ + GD ++ + II+GSV ++I G+ + L +G+ FG+L L
Sbjct: 23 TIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,727,009
Number of Sequences: 62578
Number of extensions: 181464
Number of successful extensions: 775
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 75
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.7 bits)