Query psy15589
Match_columns 155
No_of_seqs 116 out of 1179
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 16:26:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09392 ftrB transcriptional 99.7 1.6E-16 3.5E-21 118.4 10.6 119 6-134 8-129 (236)
2 PRK11753 DNA-binding transcrip 99.6 2.4E-15 5.2E-20 110.1 10.8 118 14-141 6-129 (211)
3 PF00027 cNMP_binding: Cyclic 99.6 1.3E-15 2.8E-20 96.7 8.1 85 34-126 3-91 (91)
4 KOG1113|consensus 99.6 1.9E-16 4.2E-21 121.3 4.3 127 9-146 126-253 (368)
5 cd00038 CAP_ED effector domain 99.6 4.4E-15 9.6E-20 97.2 9.3 110 12-131 1-114 (115)
6 PRK10402 DNA-binding transcrip 99.6 1.2E-14 2.5E-19 108.0 10.5 97 30-134 31-131 (226)
7 PLN03192 Voltage-dependent pot 99.6 7.8E-15 1.7E-19 126.7 10.7 116 9-134 378-496 (823)
8 COG0664 Crp cAMP-binding prote 99.6 2.2E-14 4.7E-19 104.2 10.2 122 12-143 7-133 (214)
9 TIGR03697 NtcA_cyano global ni 99.6 7.6E-14 1.7E-18 100.7 11.4 90 48-138 4-100 (193)
10 smart00100 cNMP Cyclic nucleot 99.5 5.9E-14 1.3E-18 92.2 9.2 112 12-133 1-118 (120)
11 PRK11161 fumarate/nitrate redu 99.5 1.2E-13 2.6E-18 102.8 11.5 121 3-134 10-136 (235)
12 KOG0498|consensus 99.5 6.5E-14 1.4E-18 117.6 8.7 115 9-133 423-542 (727)
13 COG2905 Predicted signal-trans 99.5 1.9E-13 4E-18 110.6 10.1 129 8-146 10-140 (610)
14 KOG0500|consensus 99.5 2E-13 4.2E-18 108.8 9.6 92 48-140 341-439 (536)
15 KOG0614|consensus 99.5 4.5E-14 9.7E-19 113.5 5.1 127 7-144 156-283 (732)
16 PRK09391 fixK transcriptional 99.4 1.8E-12 3.9E-17 96.5 10.7 94 30-134 38-135 (230)
17 KOG0614|consensus 99.4 1.2E-12 2.5E-17 105.5 6.5 114 10-132 277-395 (732)
18 KOG0499|consensus 99.4 2.5E-12 5.4E-17 104.6 8.4 104 35-146 555-663 (815)
19 PLN02868 acyl-CoA thioesterase 99.3 4.8E-12 1E-16 101.8 7.8 104 7-122 10-116 (413)
20 PRK13918 CRP/FNR family transc 99.3 1.9E-11 4.1E-16 88.9 9.8 77 32-117 8-90 (202)
21 KOG1113|consensus 99.1 2.3E-10 5E-15 88.3 5.9 111 9-129 244-354 (368)
22 KOG2968|consensus 98.8 9.8E-09 2.1E-13 87.3 5.2 117 12-139 493-613 (1158)
23 KOG0501|consensus 98.6 4E-08 8.7E-13 80.6 4.5 93 33-134 574-668 (971)
24 KOG2968|consensus 98.1 1.9E-05 4E-10 67.9 9.1 79 48-127 397-485 (1158)
25 PF04831 Popeye: Popeye protei 98.1 5.2E-05 1.1E-09 52.5 8.8 121 15-144 14-144 (153)
26 PRK11832 putative DNA-binding 98.0 0.00019 4E-09 52.6 10.6 92 30-129 22-114 (207)
27 KOG3542|consensus 97.6 0.00024 5.1E-09 59.9 6.7 126 11-146 287-413 (1283)
28 KOG2378|consensus 97.0 0.00049 1.1E-08 55.4 2.3 66 81-146 1-66 (573)
29 KOG3542|consensus 93.4 0.16 3.4E-06 43.6 4.9 83 11-112 43-125 (1283)
30 PF05899 Cupin_3: Protein of u 88.5 1.1 2.4E-05 27.2 4.1 29 56-85 26-54 (74)
31 PF07883 Cupin_2: Cupin domain 88.2 2.8 6.1E-05 24.4 5.8 50 57-112 21-70 (71)
32 cd04437 DEP_Epac DEP (Dishevel 83.2 0.28 6.1E-06 33.2 -0.5 42 4-47 1-42 (125)
33 PRK13290 ectC L-ectoine syntha 76.3 16 0.00036 24.5 6.3 49 57-112 57-106 (125)
34 PRK13264 3-hydroxyanthranilate 72.8 16 0.00035 26.3 5.8 56 53-114 52-109 (177)
35 TIGR03037 anthran_nbaC 3-hydro 69.3 15 0.00033 25.9 5.0 56 54-115 47-104 (159)
36 PRK09943 DNA-binding transcrip 66.4 25 0.00054 25.0 5.9 52 55-112 128-179 (185)
37 smart00835 Cupin_1 Cupin. This 66.2 30 0.00066 23.5 6.0 31 55-85 51-85 (146)
38 TIGR03214 ura-cupin putative a 64.2 32 0.00069 26.2 6.3 51 56-112 81-131 (260)
39 PRK11171 hypothetical protein; 59.3 48 0.001 25.3 6.5 52 55-112 83-134 (266)
40 COG1917 Uncharacterized conser 58.2 24 0.00052 23.5 4.3 31 55-87 64-94 (131)
41 COG3837 Uncharacterized conser 57.8 20 0.00044 25.3 3.8 35 52-88 61-95 (161)
42 COG3718 IolB Uncharacterized e 54.4 43 0.00094 25.4 5.3 58 49-113 43-109 (270)
43 COG0662 {ManC} Mannose-6-phosp 53.5 35 0.00076 22.7 4.5 29 55-85 57-85 (127)
44 cd04440 DEP_2_P-Rex DEP (Dishe 50.1 3.1 6.7E-05 26.7 -1.1 43 3-47 7-49 (93)
45 COG3257 GlxB Uncharacterized p 45.0 1.3E+02 0.0027 22.7 6.4 59 50-114 78-136 (264)
46 PF11699 CENP-C_C: Mif2/CENP-C 44.5 49 0.0011 20.7 3.7 29 55-85 33-61 (85)
47 PF05523 FdtA: WxcM-like, C-te 41.8 1E+02 0.0022 20.8 5.3 62 54-119 53-116 (131)
48 PRK04190 glucose-6-phosphate i 41.3 98 0.0021 22.5 5.4 31 55-85 97-130 (191)
49 TIGR02451 anti_sig_ChrR anti-s 41.2 46 0.00099 24.6 3.8 56 49-114 141-196 (215)
50 PF00190 Cupin_1: Cupin; Inte 41.1 61 0.0013 21.9 4.2 32 54-85 53-94 (144)
51 TIGR03404 bicupin_oxalic bicup 40.2 71 0.0015 25.7 5.0 31 55-85 266-299 (367)
52 COG3450 Predicted enzyme of th 39.7 74 0.0016 21.2 4.2 29 56-85 64-92 (116)
53 TIGR03404 bicupin_oxalic bicup 37.3 87 0.0019 25.2 5.0 31 55-85 87-120 (367)
54 PF12852 Cupin_6: Cupin 36.9 81 0.0017 22.2 4.4 31 55-85 35-65 (186)
55 PRK15457 ethanolamine utilizat 35.5 93 0.002 23.5 4.6 28 56-85 176-203 (233)
56 PF02311 AraC_binding: AraC-li 34.5 1E+02 0.0022 19.6 4.4 64 54-122 22-86 (136)
57 COG5458 Uncharacterized conser 34.4 46 0.001 22.4 2.5 33 54-87 54-86 (144)
58 PF06249 EutQ: Ethanolamine ut 32.6 1.1E+02 0.0024 21.5 4.3 28 56-85 96-123 (152)
59 cd04441 DEP_2_DEP6 DEP (Dishev 32.3 8.6 0.00019 24.2 -1.1 42 4-47 3-44 (85)
60 PRK10579 hypothetical protein; 31.1 1.4E+02 0.0031 19.1 4.3 33 54-86 40-72 (94)
61 COG4766 EutQ Ethanolamine util 31.1 1.1E+02 0.0024 21.6 4.0 28 55-84 118-145 (176)
62 COG4101 Predicted mannose-6-ph 29.8 1.3E+02 0.0027 20.4 4.0 43 56-98 68-111 (142)
63 KOG3179|consensus 29.1 16 0.00034 27.1 -0.3 63 78-140 134-208 (245)
64 PF06865 DUF1255: Protein of u 28.4 1.2E+02 0.0025 19.5 3.6 33 55-87 41-73 (94)
65 PF05726 Pirin_C: Pirin C-term 26.6 66 0.0014 20.6 2.3 57 53-119 18-75 (104)
66 PF06052 3-HAO: 3-hydroxyanthr 25.0 1.8E+02 0.0039 20.4 4.3 33 53-85 51-85 (151)
67 PRK15460 cpsB mannose-1-phosph 24.1 2.6E+02 0.0055 23.5 5.8 52 55-112 406-457 (478)
68 TIGR01479 GMP_PMI mannose-1-ph 22.9 2.7E+02 0.0058 23.1 5.7 28 56-85 398-425 (468)
69 KOG4410|consensus 22.6 3.9E+02 0.0084 21.1 7.3 62 53-119 153-221 (396)
70 PF04962 KduI: KduI/IolB famil 21.6 2.3E+02 0.0051 21.6 4.8 59 54-113 46-106 (261)
No 1
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.70 E-value=1.6e-16 Score=118.44 Aligned_cols=119 Identities=16% Similarity=0.193 Sum_probs=107.5
Q ss_pred hhHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe---eEEEccCC
Q psy15589 6 WVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAG 82 (155)
Q Consensus 6 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~---~~~~l~~G 82 (155)
.+-+.++|..+++...+.+... ...+++.+|+.+ +.+|+.++++|+|++|.++++....+ .+..+.+|
T Consensus 8 ~l~~~~~f~~L~~~~~~~l~~~--~~~~~~~~ge~l-------~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g 78 (236)
T PRK09392 8 RLRNLPLFADMADATFERLMRG--AFLQRFPPGTML-------ITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPV 78 (236)
T ss_pred HHhcCccccCCCHHHHHHHHhh--cceeecCCCCEE-------EeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCC
Confidence 3446889999999999997776 677889999999 99999999999999999999875443 78899999
Q ss_pred CeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 83 EDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 83 ~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
++||+.+++.+.++.++++|.++ |.++.+|.+.|.+++.++|.+...+...
T Consensus 79 ~~~g~~~~~~~~~~~~~~~A~~~-~~~~~i~~~~~~~l~~~~p~l~~~~~~~ 129 (236)
T PRK09392 79 STFILAAVVLDAPYLMSARTLTR-SRVLMIPAELVREAMSEDPGFMRAVVFE 129 (236)
T ss_pred chhhhHHHhCCCCCceEEEEcCc-eEEEEEeHHHHHHHHHHCHHHHHHHHHH
Confidence 99999999999999999999995 9999999999999999999999887666
No 2
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.64 E-value=2.4e-15 Score=110.09 Aligned_cols=118 Identities=19% Similarity=0.329 Sum_probs=98.7
Q ss_pred hhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCeeehhh
Q psy15589 14 NDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLA 89 (155)
Q Consensus 14 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe~~ 89 (155)
+.++++..+.+... ...+.+.+|+.+ +.+|++.+++|+|++|.++++..+.+ .+..+++|++||+.+
T Consensus 6 ~~~~~~~~~~l~~~--~~~~~~~kg~~l-------~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~ 76 (211)
T PRK11753 6 KPQTDPTLEWFLSH--CHIHKYPAKSTL-------IHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG 76 (211)
T ss_pred CCCCHHHHHHHHhh--CeEEEeCCCCEE-------EeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehh
Confidence 45777777776665 567789999999 99999999999999999999976543 688899999999999
Q ss_pred hhcCC-CceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhhhh
Q psy15589 90 LVNNA-PRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVLVL 141 (155)
Q Consensus 90 ll~~~-~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~~~ 141 (155)
++.+. +++.++.|.++ |.++.+|.++|.+++..+|.+...+.+. +.+...+
T Consensus 77 ~~~~~~~~~~~~~a~~~-~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~ 129 (211)
T PRK11753 77 LFEEGQERSAWVRAKTA-CEVAEISYKKFRQLIQVNPDILMALSAQMARRLQNT 129 (211)
T ss_pred hccCCCCceEEEEEcCc-EEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 99864 68889999995 9999999999999999999998766554 4444333
No 3
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.64 E-value=1.3e-15 Score=96.71 Aligned_cols=85 Identities=26% Similarity=0.530 Sum_probs=78.9
Q ss_pred HhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCeeehhhhhcCCCceeEEEEecCcEEE
Q psy15589 34 RCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHF 109 (155)
Q Consensus 34 ~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~v 109 (155)
++.+|+.+ +.+|+..+++|+|++|.++++..+.+ .+..+++|++||+.+++.+.++..+++|.++ |.+
T Consensus 3 ~~~~g~~i-------~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~-~~~ 74 (91)
T PF00027_consen 3 TYKKGEVI-------YRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTD-SEV 74 (91)
T ss_dssp EESTTEEE-------EETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSS-EEE
T ss_pred EECCCCEE-------EeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccC-EEE
Confidence 46777778 99999999999999999999998876 5789999999999999999999999999995 999
Q ss_pred EEEcHHHHHHHHHhhHH
Q psy15589 110 LRVDKDDFIRIMRDVEA 126 (155)
Q Consensus 110 l~l~~~~f~~l~~~~~~ 126 (155)
+.||+++|.++++++|+
T Consensus 75 ~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 75 LRIPREDFLQLLQQDPE 91 (91)
T ss_dssp EEEEHHHHHHHHHHSHH
T ss_pred EEEeHHHHHHHHHhCcC
Confidence 99999999999999985
No 4
>KOG1113|consensus
Probab=99.63 E-value=1.9e-16 Score=121.32 Aligned_cols=127 Identities=30% Similarity=0.507 Sum_probs=114.2
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehh
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKL 88 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~ 88 (155)
.+-+|++++++.+.++... ....+...|..+ +.||+.++++|+|-+|.+.++..+. .+..++||..|||+
T Consensus 126 ~~~LF~~Ld~eq~~~v~da--m~~~~v~~G~~V-------i~qGdeGd~fYvI~kGt~dVyv~~~-~v~~~~~g~sFGEl 195 (368)
T KOG1113|consen 126 KNLLFANLDDEQLSQVLDA--MFEKRVKAGETV-------IKQGDEGDNFYVIDKGTFDVYVNGT-YVTTYSPGGSFGEL 195 (368)
T ss_pred hccccccCCHHHHHHHHHh--hceeeecCCcEE-------EecCCcCCcEEEEecceEEEEECCe-EEeeeCCCCchhhh
Confidence 4568999999999997777 788889999999 9999999999999999999999966 99999999999999
Q ss_pred hhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhhhhhhhhc
Q psy15589 89 ALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVLVLERMVN 146 (155)
Q Consensus 89 ~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~~~~~~~~ 146 (155)
+++-+.||.+|++|.++ +.+|.+++..|.+++-.+....++|++. ++.+-++++...
T Consensus 196 ALmyn~PRaATv~a~t~-~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~pil~~l~k 253 (368)
T KOG1113|consen 196 ALMYNPPRAATVVAKSL-KKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVPILESLEK 253 (368)
T ss_pred HhhhCCCcccceeeccc-cceEEEeeceeEEEeeccchhhhhhhhhhhhcchhhHHHHH
Confidence 99999999999999995 9999999999999999888888777777 888877775443
No 5
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.62 E-value=4.4e-15 Score=97.22 Aligned_cols=110 Identities=30% Similarity=0.482 Sum_probs=96.8
Q ss_pred hhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCeeeh
Q psy15589 12 LLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGK 87 (155)
Q Consensus 12 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe 87 (155)
+|..+++.....+... .....+.+|+.+ +.+|++.+++|+|.+|.++++....+ .+..+.+|++||+
T Consensus 1 ~f~~l~~~~~~~l~~~--~~~~~~~~g~~l-------~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 1 LFSGLDDEELEELADA--LEERRFPAGEVI-------IRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred CcccCCHHHHHHHHhh--ceeeeeCCCCEE-------EcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 4677888788776665 566779999999 99999999999999999999987753 6888999999999
Q ss_pred hhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHH
Q psy15589 88 LALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRL 131 (155)
Q Consensus 88 ~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l 131 (155)
..++.+.++..++.|.+ +|.++.++++.|.+++.++|.+...+
T Consensus 72 ~~~~~~~~~~~~~~a~~-~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 72 LALLGNGPRSATVRALT-DSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred HHHhcCCCCCceEEEcC-ceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 99998889999999999 59999999999999999999887654
No 6
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.59 E-value=1.2e-14 Score=107.99 Aligned_cols=97 Identities=11% Similarity=0.156 Sum_probs=88.4
Q ss_pred HHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCeeehhhhhcCCCceeEEEEecC
Q psy15589 30 TIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAPRAATIVTRED 105 (155)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~ 105 (155)
...+.+.+|+.+ +.+|++.+++|+|++|.|+++..+.+ .+..+.||++||+.+++.+.++++++.|.++
T Consensus 31 ~~~~~~~kge~l-------~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~ 103 (226)
T PRK10402 31 TELFHFLAREYI-------VQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEE 103 (226)
T ss_pred hhheeeCCCCEE-------EcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEecc
Confidence 355678999999 99999999999999999999987654 6888999999999999999999999999995
Q ss_pred cEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 106 NCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 106 ~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
|.++.+|++.|.+++..+|.+...+.+.
T Consensus 104 -~~i~~i~~~~~~~ll~~~p~~~~~~~~~ 131 (226)
T PRK10402 104 -CWCLALPMKDCRPLLLNDALFLRKLCKF 131 (226)
T ss_pred -EEEEEEEHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999877776
No 7
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.59 E-value=7.8e-15 Score=126.66 Aligned_cols=116 Identities=18% Similarity=0.296 Sum_probs=95.2
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe---eEEEccCCCee
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDF 85 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~---~~~~l~~G~~f 85 (155)
..++|++++++....+... ...+.+.+|+.+ +.+|+.++.+|+|++|.|++.....+ .+..+++|++|
T Consensus 378 ~~~lF~~~s~~~l~~L~~~--~~~~~~~pge~I-------~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 378 KVYLFKGVSREILLLLVTK--MKAEYIPPREDV-------IMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF 448 (823)
T ss_pred hCcchhcCCHHHHHHHHHh--hheeeeCCCCEE-------EECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence 3456666666666554333 333446666666 99999999999999999999864432 68899999999
Q ss_pred ehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 86 GKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 86 Ge~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
||.+++.+.|++++++|.+ .|.++.+++++|.++++.+|+....+.+.
T Consensus 449 GE~~~l~~~p~~~t~ra~~-~s~ll~l~~~~f~~ll~~~p~d~~~i~~~ 496 (823)
T PLN03192 449 GEVGALCCRPQSFTFRTKT-LSQLLRLKTSTLIEAMQTRQEDNVVILKN 496 (823)
T ss_pred cchHHhcCCCCCCeEEEcc-cEEEEEEEHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999 59999999999999999999988877666
No 8
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.57 E-value=2.2e-14 Score=104.22 Aligned_cols=122 Identities=26% Similarity=0.397 Sum_probs=99.1
Q ss_pred hhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCeeeh
Q psy15589 12 LLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGK 87 (155)
Q Consensus 12 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe 87 (155)
+|..++.......... ...+.+.+|..+ +.+|++++++|+|.+|.++++....+ .+..++||++||+
T Consensus 7 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~l-------~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~ 77 (214)
T COG0664 7 LLNLLPSELLELLALK--LEVRKLPKGEVL-------FTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGE 77 (214)
T ss_pred ccccCCHHHHHHHhhh--ceeEeeCCCCEE-------EcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhh
Confidence 3444455555554333 466778999888 99999999999999999999998764 7888999999999
Q ss_pred hhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhhhhhh
Q psy15589 88 LALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVLVLER 143 (155)
Q Consensus 88 ~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~~~~~ 143 (155)
.+++.+.+++++++|.+| |.++.++++.|..++.+.|.+...+... .++......
T Consensus 78 ~~l~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~~ 133 (214)
T COG0664 78 LALLGGDPRSASAVALTD-VEVLEIPRKDFLELLAESPKLALALLRLLARRLRQALE 133 (214)
T ss_pred HHHhcCCCccceEEEcce-EEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999996 9999999999999888888888877766 444444433
No 9
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.55 E-value=7.6e-14 Score=100.72 Aligned_cols=90 Identities=19% Similarity=0.280 Sum_probs=78.9
Q ss_pred cccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCeeehhhhhcCCC--ceeEEEEecCcEEEEEEcHHHHHHHH
Q psy15589 48 MFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAP--RAATIVTREDNCHFLRVDKDDFIRIM 121 (155)
Q Consensus 48 i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe~~ll~~~~--~~~~~~a~~~~~~vl~l~~~~f~~l~ 121 (155)
++.+|++.+++|+|.+|.|+++..+.+ .+..++||++||+.+++.+.+ +..++.|.++ |.++.+|+++|.+++
T Consensus 4 l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~-~~v~~i~~~~~~~l~ 82 (193)
T TIGR03697 4 IFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTR-VELLAVPIEQVEKAI 82 (193)
T ss_pred eecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecc-eEEEEeeHHHHHHHH
Confidence 389999999999999999999986654 689999999999999998875 4578999995 999999999999999
Q ss_pred HhhHHHHHHHHHh-chhh
Q psy15589 122 RDVEANTVRLKEH-GKDV 138 (155)
Q Consensus 122 ~~~~~~~~~l~~~-~~~~ 138 (155)
.++|.+...+.+. +.++
T Consensus 83 ~~~p~l~~~~~~~l~~~l 100 (193)
T TIGR03697 83 EEDPDLSMLLLQGLSSRI 100 (193)
T ss_pred HHChHHHHHHHHHHHHHH
Confidence 9999999877766 4433
No 10
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.54 E-value=5.9e-14 Score=92.23 Aligned_cols=112 Identities=28% Similarity=0.398 Sum_probs=95.4
Q ss_pred hhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCeeeh
Q psy15589 12 LLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGK 87 (155)
Q Consensus 12 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe 87 (155)
+|.++|+...+.+... ...+.+.+|+.+ +.+|++.+++|+|.+|.++++..+.+ .+..+.+|++||+
T Consensus 1 ~f~~l~~~~~~~l~~~--~~~~~~~~g~~l-------~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (120)
T smart00100 1 LFKNLDAEELRELADA--LEPVRYPAGEVI-------IRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGE 71 (120)
T ss_pred CcCCCCHHHHHHHHHh--ceEEEeCCCCEE-------EeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceech
Confidence 4678888888886655 455678999998 99999999999999999999986432 7889999999999
Q ss_pred hhhh--cCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHH
Q psy15589 88 LALV--NNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKE 133 (155)
Q Consensus 88 ~~ll--~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~ 133 (155)
.+++ ...++..++.+.+ .|.++.++.+.|...+..++.....+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 118 (120)
T smart00100 72 LALLTNSRRAASATAVALE-LATLLRIDFRDFLQLLQENPQLLLELLL 118 (120)
T ss_pred hhhccCCCcccceEEEEEe-eEEEEccCHHHHHHHHHHhHHHHHHHHh
Confidence 9988 3467889999999 5999999999999999999988776543
No 11
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.53 E-value=1.2e-13 Score=102.84 Aligned_cols=121 Identities=14% Similarity=0.091 Sum_probs=98.1
Q ss_pred chhhhH-HHhhhhhhhHHHHHHHhhcCHHH-HHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eE
Q psy15589 3 RAGWVL-RTLLLNDESGTLRDRKTSGGRTI-ARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CV 76 (155)
Q Consensus 3 ~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~ 76 (155)
|.-+.+ +...+..+|++..+.+... .. .+.+.+|+.+ +.+|++.+++|+|.+|.++++..+.+ .+
T Consensus 10 ~~~~~~~~~~~~~~l~~~~l~~L~~~--~~~~~~~~kge~l-------~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~ 80 (235)
T PRK11161 10 CQDCSISQLCIPFTLNEHELDQLDNI--IERKKPIQKGQTL-------FKAGDELKSLYAIRSGTIKSYTITEQGDEQIT 80 (235)
T ss_pred cccccccccccccCCCHHHHHHHHHh--hhhceeecCCCEe-------ECCCCCcceEEEEeeceEEEEEECCCCCEEEE
Confidence 333433 3344557999999987655 33 3568999999 99999999999999999999987653 67
Q ss_pred EEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 77 TSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 77 ~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
..+.||++||+.+++. .++..+++|.++ +.++.+|++.|.+++.++|.+...+.+.
T Consensus 81 ~~~~~gd~~g~~~~~~-~~~~~~~~a~~~-~~i~~ip~~~f~~l~~~~p~~~~~~~~~ 136 (235)
T PRK11161 81 GFHLAGDLVGFDAIGS-GQHPSFAQALET-SMVCEIPFETLDDLSGKMPKLRQQIMRL 136 (235)
T ss_pred EeccCCceeccccccC-CCCcceEEEecc-EEEEEEEHHHHHHHHHHChHHHHHHHHH
Confidence 7889999999976654 455678999995 9999999999999999999998877666
No 12
>KOG0498|consensus
Probab=99.50 E-value=6.5e-14 Score=117.62 Aligned_cols=115 Identities=21% Similarity=0.353 Sum_probs=93.0
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe---eEEEccCCCee
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDF 85 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~---~~~~l~~G~~f 85 (155)
+.++|+++++..++.+... .....+.+|+.+ +++||+.+.+|||.+|.+++...+++ ....|++||+|
T Consensus 423 ~vpLF~~md~~~L~al~~r--lk~~~f~pge~i-------ireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 423 KVPLFAGMDDGLLDALCSR--LKPEYFTPGEYI-------IREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFF 493 (727)
T ss_pred hCchhhcCCHHHHHHHHHH--hhhhccCCCCeE-------EecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCcc
Confidence 4555555555555553332 233345555555 99999999999999999999988753 88999999999
Q ss_pred e-hhhhhcC-CCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHH
Q psy15589 86 G-KLALVNN-APRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKE 133 (155)
Q Consensus 86 G-e~~ll~~-~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~ 133 (155)
| |+..... .|.+.||+|.+ .|+++.|.+++|..+++.+|.+..++.+
T Consensus 494 GeEl~~~~~~~p~t~TVralt-~~el~~L~~~dL~~V~~~f~~~~~~~l~ 542 (727)
T KOG0498|consen 494 GEELLTWCLDLPQTRTVRALT-YCELFRLSADDLKEVLQQFRRLGSKFLQ 542 (727)
T ss_pred chHHHHHHhcCCCCceeehhh-hhhHHhccHHHHHHHHHHhHHHHHHHHH
Confidence 9 8888887 88899999999 6999999999999999999998876665
No 13
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.49 E-value=1.9e-13 Score=110.64 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=114.5
Q ss_pred HHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeeh
Q psy15589 8 LRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGK 87 (155)
Q Consensus 8 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe 87 (155)
...+.|+.+|++.+.++... .-++.|.+|+.+ +..+.+.+++|+|.+|.|+++..+++.++.+..||.||-
T Consensus 10 ~~~pPF~~L~~eel~~L~~~--l~v~yy~kge~i-------i~~~~p~~~l~vi~kG~vev~~~~g~v~~~~~~gdlFg~ 80 (610)
T COG2905 10 QQHPPFSQLPAEELEQLMGA--LEVKYYRKGEII-------IYAGSPVHYLYVIRKGVVEVRSDGGEVLDRLAAGDLFGF 80 (610)
T ss_pred hcCCCcccCCHHHHHHHHhh--hccccccCCCee-------ecCCCCcceeEEEEeceeeEEcCCCeeeeeeccCccccc
Confidence 35688999999999998777 788889999777 999999999999999999999999889999999999999
Q ss_pred hhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhh-hhhhhhc
Q psy15589 88 LALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVL-VLERMVN 146 (155)
Q Consensus 88 ~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~-~~~~~~~ 146 (155)
.+++++.+......|.+| +.++.||++.|+++++++|.+...+... .+|.. ...+..+
T Consensus 81 ~~l~~~~~~~~~~~aeed-sl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~~~e 140 (610)
T COG2905 81 SSLFTELNKQRYMAAEED-SLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRLAE 140 (610)
T ss_pred hhhcccCCCcceeEeecc-ceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988888889996 9999999999999999999999988855 66666 4444444
No 14
>KOG0500|consensus
Probab=99.49 E-value=2e-13 Score=108.76 Aligned_cols=92 Identities=27% Similarity=0.488 Sum_probs=83.3
Q ss_pred cccccccCCeEEEEEecEEEEEEecCe-eEEEccCCCeeehhhhh------cCCCceeEEEEecCcEEEEEEcHHHHHHH
Q psy15589 48 MFHQGDEGKSWYIIIQGSVDVVIYGKG-CVTSLYAGEDFGKLALV------NNAPRAATIVTREDNCHFLRVDKDDFIRI 120 (155)
Q Consensus 48 i~~~g~~~~~lyii~~G~v~v~~~~~~-~~~~l~~G~~fGe~~ll------~~~~~~~~~~a~~~~~~vl~l~~~~f~~l 120 (155)
|++.||.+..+|||..|.+++...++. ....+++|++|||++++ .|..|+++++.+. .+.++.++++++.+.
T Consensus 341 ICrKGdvgkEMyIVk~G~L~Vv~dDg~t~~~~L~~G~~FGEisIlni~g~~~gNRRtanvrSvG-YSDlfvLskdDl~~a 419 (536)
T KOG0500|consen 341 ICRKGDVGKEMYIVKEGKLAVVADDGVTVFVTLKAGSVFGEISILNIKGNKNGNRRTANVRSVG-YSDLFVLSKDDLWEA 419 (536)
T ss_pred EEecCcccceEEEEEccEEEEEecCCcEEEEEecCCceeeeeEEEEEcCcccCCcceeeeeeec-cceeeEeeHHHHHHH
Confidence 499999999999999999999988886 78999999999999888 3567999999999 899999999999999
Q ss_pred HHhhHHHHHHHHHhchhhhh
Q psy15589 121 MRDVEANTVRLKEHGKDVLV 140 (155)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~ 140 (155)
++++|+.+..+.+.+++.+.
T Consensus 420 L~eYP~a~~~L~~kgr~iL~ 439 (536)
T KOG0500|consen 420 LSEYPDARKRLEEKGRQILH 439 (536)
T ss_pred HHhCCHHHHHHHHHHHHHhh
Confidence 99999999988877665543
No 15
>KOG0614|consensus
Probab=99.47 E-value=4.5e-14 Score=113.53 Aligned_cols=127 Identities=20% Similarity=0.334 Sum_probs=106.1
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeee
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 86 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fG 86 (155)
+.++.++++|.+...+.+... .--.++.+|..+ +++|++++.+|++..|++.|...+. .+..+++|..||
T Consensus 156 i~~NdFLknLd~~Qi~e~v~~--Myp~~~~~gs~I-------Irege~Gs~~yV~aeG~~~V~~~g~-ll~~m~~gtvFG 225 (732)
T KOG0614|consen 156 IQKNDFLKNLDASQIKELVDC--MYPVEYRAGSWI-------IREGEPGSHLYVSAEGELQVSREGK-LLGKMGAGTVFG 225 (732)
T ss_pred HHhhHHHHhhhHHHHHHHHHh--hCcccccCCcEE-------EecCCCCceEEEeecceEEEeeCCe-eeeccCCchhhh
Confidence 446778888888888775544 455668888888 9999999999999999999999888 999999999999
Q ss_pred hhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHH-HHHHHhchhhhhhhhh
Q psy15589 87 KLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANT-VRLKEHGKDVLVLERM 144 (155)
Q Consensus 87 e~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~-~~l~~~~~~~~~~~~~ 144 (155)
|++++-+.+|++++.|+++ +.+|.|+|+.|+.+|....... ....++++.+-.+...
T Consensus 226 ELAILynctRtAsV~alt~-~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv~~~q~l 283 (732)
T KOG0614|consen 226 ELAILYNCTRTASVRALTD-VRLWAIDREVFQAIMMRTGLERHEQYMNFLRSVPLFQNL 283 (732)
T ss_pred HHHHHhCCcchhhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 9999999999999999995 9999999999999998554443 4555566666655543
No 16
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.43 E-value=1.8e-12 Score=96.55 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=82.3
Q ss_pred HHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCeeehhhhhcCCCceeEEEEecC
Q psy15589 30 TIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAPRAATIVTRED 105 (155)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~ 105 (155)
.....+.+|+.+ +.+|++++++|+|++|.++++..+.+ .+..+.+|++||+. .+.++.+++.|.+|
T Consensus 38 ~~~~~~~kge~l-------~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~d 107 (230)
T PRK09391 38 ASEFSYKKGEEI-------YGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVD 107 (230)
T ss_pred eeeEEECCCCEE-------ECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCc
Confidence 345668888888 99999999999999999999986543 67888999999974 46678899999995
Q ss_pred cEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 106 NCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 106 ~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
|.++.+|.+.|.+++..+|.+...+.+.
T Consensus 108 -s~v~~i~~~~f~~l~~~~p~l~~~l~~~ 135 (230)
T PRK09391 108 -TTVRLIKRRSLEQAAATDVDVARALLSL 135 (230)
T ss_pred -eEEEEEEHHHHHHHHhhChHHHHHHHHH
Confidence 9999999999999999999999887766
No 17
>KOG0614|consensus
Probab=99.36 E-value=1.2e-12 Score=105.53 Aligned_cols=114 Identities=23% Similarity=0.400 Sum_probs=99.5
Q ss_pred HhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe-----eEEEccCCCe
Q psy15589 10 TLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG-----CVTSLYAGED 84 (155)
Q Consensus 10 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~-----~~~~l~~G~~ 84 (155)
.++|.++|++.+.++... .....|..|..+ +++|+.++++|+|.+|.|.+...++. .+..++.||+
T Consensus 277 v~~~q~l~Ee~L~KiaD~--le~~~Yd~g~yI-------irqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 277 VPLFQNLPEELLLKIADV--LEEEYYDAGEYI-------IRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred hhhhccCCHHHHHHHHHH--HHHHhhcCCceE-------EeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 577888899888887766 566667777777 99999999999999999999987654 6899999999
Q ss_pred eehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHH
Q psy15589 85 FGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLK 132 (155)
Q Consensus 85 fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~ 132 (155)
|||-+++...-|++++.|..+.+.++.|+|+.|..++....++..+-+
T Consensus 348 FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~ 395 (732)
T KOG0614|consen 348 FGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDY 395 (732)
T ss_pred hhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhc
Confidence 999999999999999999997799999999999999998888775433
No 18
>KOG0499|consensus
Probab=99.36 E-value=2.5e-12 Score=104.58 Aligned_cols=104 Identities=25% Similarity=0.397 Sum_probs=91.6
Q ss_pred hhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe--eEEEccCCCeeehhhhhc---CCCceeEEEEecCcEEE
Q psy15589 35 CASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG--CVTSLYAGEDFGKLALVN---NAPRAATIVTREDNCHF 109 (155)
Q Consensus 35 ~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~--~~~~l~~G~~fGe~~ll~---~~~~~~~~~a~~~~~~v 109 (155)
+..|+.+ +..|+.+..+|||..|.|.|.....+ ++.+|++|+.|||++++. |..|+++++|.. .|.+
T Consensus 555 yLPgDfV-------CkKGeiGkEMYIIk~GqvQVlGGp~~~~Vl~tL~~GsVFGEISLLaigG~nRRTAnV~a~G-f~nL 626 (815)
T KOG0499|consen 555 YLPGDFV-------CKKGEIGKEMYIIKHGQVQVLGGPDGTKVLVTLKAGSVFGEISLLAIGGGNRRTANVVAHG-FANL 626 (815)
T ss_pred ecCCcee-------eecccccceeEEeecceEEEecCCCCCEEEEEecccceeeeeeeeeecCCCccchhhhhcc-ccee
Confidence 5566666 99999999999999999999987665 899999999999998884 567899999999 8999
Q ss_pred EEEcHHHHHHHHHhhHHHHHHHHHhchhhhhhhhhhc
Q psy15589 110 LRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLERMVN 146 (155)
Q Consensus 110 l~l~~~~f~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 146 (155)
+.++++++.+++..+|.-...+++..++++.-+.++.
T Consensus 627 fvL~KkdLneil~~YP~sq~iLrkkAr~llk~nak~~ 663 (815)
T KOG0499|consen 627 FVLDKKDLNEILVHYPDSQRILRKKARVLLKQNAKTA 663 (815)
T ss_pred eEecHhHHHHHHHhCccHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999998888777777666644
No 19
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.32 E-value=4.8e-12 Score=101.81 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=91.9
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe---eEEEccCCC
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGE 83 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~---~~~~l~~G~ 83 (155)
+-..++|+++++..++.+... ..++++.+|+.+ +.+|+..+++|+|++|.++++..+.+ .+..+++|+
T Consensus 10 L~~~~~F~~L~~~~l~~l~~~--~~~~~~~~Ge~I-------~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd 80 (413)
T PLN02868 10 LGSVPLLQRLPSSSLKKIAEV--VVPKRYGKGEYV-------VREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYD 80 (413)
T ss_pred HhcCcccccCCHHHHHHHHHh--ceEEEECCCCEE-------EeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCC
Confidence 346789999999999997766 667889999999 99999999999999999999987643 688899999
Q ss_pred eeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHH
Q psy15589 84 DFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMR 122 (155)
Q Consensus 84 ~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~ 122 (155)
+||+. +.+.++.++++|.++ |.++.|+++.|.-+..
T Consensus 81 ~fG~~--l~~~~~~~~~~A~~d-~~v~~ip~~~~~~~~~ 116 (413)
T PLN02868 81 YFGYG--LSGSVHSADVVAVSE-LTCLVLPHEHCHLLSP 116 (413)
T ss_pred Eeehh--hCCCCcccEEEECCC-EEEEEEcHHHHhhhcc
Confidence 99984 788899999999995 9999999999998655
No 20
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.31 E-value=1.9e-11 Score=88.91 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=66.8
Q ss_pred HHHhhcchhhHHHHhhcccccc--cCCeEEEEEecEEEEEEecCe----eEEEccCCCeeehhhhhcCCCceeEEEEecC
Q psy15589 32 ARRCASGSELVDWLMTMFHQGD--EGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAPRAATIVTRED 105 (155)
Q Consensus 32 ~~~~~~~~~~~~~~~~i~~~g~--~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~ 105 (155)
...+.+|+.+ +.+|+ +++++|+|++|.++++..+.+ .+..+.||++||+.+++ +.++++++.|.+|
T Consensus 8 ~~~~~kg~~l-------~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~ 79 (202)
T PRK13918 8 TVTYRPGAVI-------LYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTD 79 (202)
T ss_pred eeEecCCCEE-------EcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCc
Confidence 3457888888 99999 779999999999999987654 78889999999997654 5788999999995
Q ss_pred cEEEEEEcHHHH
Q psy15589 106 NCHFLRVDKDDF 117 (155)
Q Consensus 106 ~~~vl~l~~~~f 117 (155)
|.++.++++.|
T Consensus 80 -~~v~~i~~~~~ 90 (202)
T PRK13918 80 -SRIDVLNPALM 90 (202)
T ss_pred -eEEEEEEHHHc
Confidence 99999998776
No 21
>KOG1113|consensus
Probab=99.07 E-value=2.3e-10 Score=88.25 Aligned_cols=111 Identities=30% Similarity=0.469 Sum_probs=93.6
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehh
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKL 88 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~ 88 (155)
..++++.+....+.++... .....+..|..+ +.+|+.++.+|+|.+|++.+....+++.-.+++||+|||+
T Consensus 244 s~pil~~l~k~er~kv~da--l~~k~y~~G~~V-------i~qg~~ge~f~~i~eGEvdv~~~~~~v~vkl~~~dyfge~ 314 (368)
T KOG1113|consen 244 SVPILESLEKLERAKVADA--LGTKSYKDGERV-------IVQGDQGEHFYIIEEGEVDVLKKRDGVEVKLKKGDYFGEL 314 (368)
T ss_pred cchhhHHHHHHHHHhhhcc--cceeeccCCceE-------EeccCCcceEEEecccccchhhccCCeEEEechhhhcchH
Confidence 3466666766666665555 455568888888 9999999999999999999998887644499999999999
Q ss_pred hhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHH
Q psy15589 89 ALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTV 129 (155)
Q Consensus 89 ~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~ 129 (155)
+++.+.||.+++.|.+ ...+..+++..|++++.-.-++..
T Consensus 315 al~~~~pr~Atv~a~~-~~kc~~~dk~~ferllgpc~dilk 354 (368)
T KOG1113|consen 315 ALLKNLPRAATVVAKG-RLKCAKLDKPRFERLLGPCQDILK 354 (368)
T ss_pred HHHhhchhhceeeccC-CceeeeeChHHHHHHhhHHHHHHH
Confidence 9999999999999999 599999999999999997766654
No 22
>KOG2968|consensus
Probab=98.77 E-value=9.8e-09 Score=87.27 Aligned_cols=117 Identities=23% Similarity=0.310 Sum_probs=94.9
Q ss_pred hhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecC----eeEEEccCCCeeeh
Q psy15589 12 LLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGK----GCVTSLYAGEDFGK 87 (155)
Q Consensus 12 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~----~~~~~l~~G~~fGe 87 (155)
+++.+++-+++-... .-|....+|+.+ ++|||.++.+|+|++|+++-..... +.++.++.||.+|+
T Consensus 493 vl~~lsp~lr~~D~A---ldWv~l~~g~al-------yrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~ 562 (1158)
T KOG2968|consen 493 VLRRLSPFLRKLDFA---LDWVRLEPGQAL-------YRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGE 562 (1158)
T ss_pred HHHhcCHHHhhhhhh---cceEEeccccHH-------HhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeeh
Confidence 344445444333222 244457788888 9999999999999999999876522 27899999999999
Q ss_pred hhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHhchhhh
Q psy15589 88 LALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVL 139 (155)
Q Consensus 88 ~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~~~~~~ 139 (155)
..++++.+|..|+.|+.| +++..||..-|.-+...+|.+..++.+.+.+..
T Consensus 563 ~E~lt~~~R~tTv~AvRd-SelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 563 VEMLTKQPRATTVMAVRD-SELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred hHHhhcCCccceEEEEee-hhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999996 999999999999999999999998887744443
No 23
>KOG0501|consensus
Probab=98.62 E-value=4e-08 Score=80.60 Aligned_cols=93 Identities=22% Similarity=0.423 Sum_probs=78.6
Q ss_pred HHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcC--CCceeEEEEecCcEEEE
Q psy15589 33 RRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNN--APRAATIVTREDNCHFL 110 (155)
Q Consensus 33 ~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~--~~~~~~~~a~~~~~~vl 110 (155)
..+.+|+-+ +..|+..+.+.+|++|..++...++ .+.+|++||.||..-.-.. ....++++|++ .|.+.
T Consensus 574 ~H~APGDLl-------YHtGESvDaLcFvVsGSLEVIQDDE-VVAILGKGDVFGD~FWK~~t~~qs~ANVRALT-YcDLH 644 (971)
T KOG0501|consen 574 NHCAPGDLL-------YHTGESVDALCFVVSGSLEVIQDDE-VVAILGKGDVFGDEFWKENTLGQSAANVRALT-YCDLH 644 (971)
T ss_pred ccCCCccee-------eecCCccceEEEEEecceEEeecCc-EEEEeecCccchhHHhhhhhhhhhhhhhhhhh-hhhhh
Confidence 346666666 9999999999999999999999988 9999999999999655544 34678999999 89999
Q ss_pred EEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 111 RVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 111 ~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
.|.|+.+.+++.=+.++...+.++
T Consensus 645 ~IKrd~Ll~VLdFYtAFanSFaRN 668 (971)
T KOG0501|consen 645 MIKRDKLLKVLDFYTAFANSFARN 668 (971)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999998777777655543
No 24
>KOG2968|consensus
Probab=98.12 E-value=1.9e-05 Score=67.94 Aligned_cols=79 Identities=29% Similarity=0.387 Sum_probs=70.8
Q ss_pred cccccccCCeEEEEEecEEEEEEecC---------e-eEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHH
Q psy15589 48 MFHQGDEGKSWYIIIQGSVDVVIYGK---------G-CVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDF 117 (155)
Q Consensus 48 i~~~g~~~~~lyii~~G~v~v~~~~~---------~-~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f 117 (155)
|.++|+....+|++..|...++.... + .+...+||+.+|.+++++|.+...+++|.+| |.++.+++++|
T Consensus 397 iv~q~a~~~gl~~ii~g~l~v~~sm~~~s~~~~~~~~~~f~v~pG~ivgyla~lt~e~S~~tirArsd-t~v~~isrs~l 475 (1158)
T KOG2968|consen 397 IVEQGARDVGLYYIIKGSLSVYQSMYDVSGNLVLAGMLLFVVGPGEIVGYLAILTNEPSFITIRARSD-TRVLFISRSDL 475 (1158)
T ss_pred EEecccccceeeEEeecceeeeehhcccccccccccceEEEecCCceechhhhhcCCcceEEEEEecc-eEEEEeeHHHH
Confidence 67899999999999999998875321 1 6788899999999999999999999999996 99999999999
Q ss_pred HHHHHhhHHH
Q psy15589 118 IRIMRDVEAN 127 (155)
Q Consensus 118 ~~l~~~~~~~ 127 (155)
.+++.++|.+
T Consensus 476 ~~~~~~~p~I 485 (1158)
T KOG2968|consen 476 ERFLDAEPLI 485 (1158)
T ss_pred HHHHHhCceE
Confidence 9999999943
No 25
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=98.06 E-value=5.2e-05 Score=52.53 Aligned_cols=121 Identities=11% Similarity=0.137 Sum_probs=88.0
Q ss_pred hhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhc--
Q psy15589 15 DESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVN-- 92 (155)
Q Consensus 15 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~-- 92 (155)
++|....+++.... ..+....+|+.+ -.+.-.+.+.+-++++|++.++..+. .+....|.+|..-..+..
T Consensus 14 ~Vs~~~Fk~iv~~~-~~i~~L~~~~~Y------AvE~~T~~drLSlLLsGr~~Vs~~g~-fLH~I~p~qFlDSPEW~s~~ 85 (153)
T PF04831_consen 14 KVSRQQFKKIVGCC-CEIRTLKKGETY------AVEGKTPIDRLSLLLSGRMRVSCDGR-FLHYIYPYQFLDSPEWESLR 85 (153)
T ss_pred CCCHHHHHHHHhhh-ceEEEecCCcee------eecCCcccceEeEEEcCcEEEEECCE-eeEeecccccccChhhhccc
Confidence 34555555543332 455567777777 36666678999999999999999887 666677777766554443
Q ss_pred ---CCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-----chhhhhhhhh
Q psy15589 93 ---NAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-----GKDVLVLERM 144 (155)
Q Consensus 93 ---~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-----~~~~~~~~~~ 144 (155)
+....+|+.|.+ +|+.+.++|+.+.-++..+|-+...+... ..++.-++++
T Consensus 86 ~s~~~~FQVTitA~~-~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~~KLy~ln~~ 144 (153)
T PF04831_consen 86 PSEDDKFQVTITAEE-DCRYLCWPREKLYLLLAKDPFLAAVFSNLIGKDIAEKLYSLNEK 144 (153)
T ss_pred cCCCCeEEEEEEEcC-CcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 355689999999 59999999999999999999988766544 4455555553
No 26
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.96 E-value=0.00019 Score=52.63 Aligned_cols=92 Identities=8% Similarity=0.114 Sum_probs=71.0
Q ss_pred HHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe-eEEEccCCCeeehhhhhcCCCceeEEEEecCcEE
Q psy15589 30 TIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG-CVTSLYAGEDFGKLALVNNAPRAATIVTREDNCH 108 (155)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~-~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~ 108 (155)
+...++..|..+ ++..+.....++++.+|.+.+.. .++ .+.+..+...||-...+..........|.++ |.
T Consensus 22 g~~~~~~~~~~~------i~~~~~~~~~~~ll~~G~vsirr-~d~ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~~-c~ 93 (207)
T PRK11832 22 GTRFEFNNEKQV------IFSSDVNNEDTFVILEGVISLRR-EENVLIGITQAPYIMGLADGLMKNDIPYKLISEGN-CT 93 (207)
T ss_pred CCeEecCCCcEE------eccccCCCceEEEEEeceEEEEe-cCCeEEEeccCCeEeecccccCCCCceEEEEEcCc-cE
Confidence 344456677775 35444445789999999999954 444 7888899999999777776666788999994 99
Q ss_pred EEEEcHHHHHHHHHhhHHHHH
Q psy15589 109 FLRVDKDDFIRIMRDVEANTV 129 (155)
Q Consensus 109 vl~l~~~~f~~l~~~~~~~~~ 129 (155)
++.+|.++|.++++++.-...
T Consensus 94 ~~~i~~~~~~~iie~~~LW~~ 114 (207)
T PRK11832 94 GYHLPAKQTITLIEQNQLWRD 114 (207)
T ss_pred EEEeeHHHHHHHHHHhchHHH
Confidence 999999999999998774443
No 27
>KOG3542|consensus
Probab=97.57 E-value=0.00024 Score=59.93 Aligned_cols=126 Identities=24% Similarity=0.392 Sum_probs=90.1
Q ss_pred hhhhhhhHHHHHHHhhcCHHHHHHh-hcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhh
Q psy15589 11 LLLNDESGTLRDRKTSGGRTIARRC-ASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLA 89 (155)
Q Consensus 11 ~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ 89 (155)
+-|.+++-..+.++... ..+... .+|..+ +..|+..+.+|+|++|.|++...++ -...+.-|+.||.-.
T Consensus 287 pAFAnmtMSvrReLC~v--MvFaVVe~AGtiv-------L~dgeeLDSWsVIlNG~VEv~~PdG-k~e~l~mGnSFG~~P 356 (1283)
T KOG3542|consen 287 PAFANMTMSVRRELCLV--MVFAVVEDAGTIV-------LADGEELDSWSVILNGCVEVVKPDG-KREELKMGNSFGAEP 356 (1283)
T ss_pred hHhhcccHHHHHHHHHH--HHHHHHhhcCeEE-------ecCCcccceeEEEecceEEEecCCC-ceEEeecccccCCCC
Confidence 44555665565553333 333333 344444 8999999999999999999999998 666788899999854
Q ss_pred hhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHhchhhhhhhhhhc
Q psy15589 90 LVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLERMVN 146 (155)
Q Consensus 90 ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 146 (155)
-....-..-..++..|+|....+...+|.+++........+..+...-+++.+..+=
T Consensus 357 T~dkqym~G~mRTkVDDCqFVciaqqDycrIln~vekn~~KveeeGEiVmv~EhRel 413 (1283)
T KOG3542|consen 357 TPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNTVEKNIEKVEEEGEIVMVVEHREL 413 (1283)
T ss_pred CcchhhhhhhhheecccceEEEeehhhHHHHHHHHHhhhhhhhccCcEEEEEeeeec
Confidence 433222222233333469999999999999999999999998888888887776543
No 28
>KOG2378|consensus
Probab=96.96 E-value=0.00049 Score=55.42 Aligned_cols=66 Identities=80% Similarity=1.201 Sum_probs=62.0
Q ss_pred CCCeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHhchhhhhhhhhhc
Q psy15589 81 AGEDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLERMVN 146 (155)
Q Consensus 81 ~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 146 (155)
.||-||.+++..+.||-++++.-+|+|..+++++.+|..++.+..+...++++..+.++++++...
T Consensus 1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~vEa~t~Rlk~~~edvlVle~~~~ 66 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDVEANTVRLKEHGEDVLVLEKVSI 66 (573)
T ss_pred CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhhhhcceehhhcCcceeeeecccc
Confidence 489999999999999999999999999999999999999999999999999999999999998654
No 29
>KOG3542|consensus
Probab=93.43 E-value=0.16 Score=43.64 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=54.8
Q ss_pred hhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhh
Q psy15589 11 LLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLAL 90 (155)
Q Consensus 11 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~l 90 (155)
.+|++|-...++.+... ..+.+++ |+.+ +|..|+.+..+||+++|.|-+. -.++-|...||-
T Consensus 43 d~~snl~~~~lk~l~~~--aryer~~-g~~i------lf~~~~var~wyillsgsv~v~------gqi~mp~~~fgk--- 104 (1283)
T KOG3542|consen 43 DTFSNLFIGPLKALCKT--ARYERHP-GQYI------LFRDGDVARSWYILLSGSVFVE------GQIYMPYGCFGK--- 104 (1283)
T ss_pred hhhhhhhhhhHHHhhhh--hhhhcCC-CceE------EecccchhhheeeeeccceEee------cceecCcccccc---
Confidence 34444444444443333 3444444 4444 4999999999999999998773 233456566665
Q ss_pred hcCCCceeEEEEecCcEEEEEE
Q psy15589 91 VNNAPRAATIVTREDNCHFLRV 112 (155)
Q Consensus 91 l~~~~~~~~~~a~~~~~~vl~l 112 (155)
-+|..|+.++..++ +++++++
T Consensus 105 r~g~~r~~nclllq-~semivi 125 (1283)
T KOG3542|consen 105 RTGQNRTHNCLLLQ-ESEMIVI 125 (1283)
T ss_pred ccccccccceeeec-ccceeee
Confidence 35667888888888 5888887
No 30
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=88.52 E-value=1.1 Score=27.20 Aligned_cols=29 Identities=17% Similarity=0.448 Sum_probs=24.8
Q ss_pred CeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 56 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
+.+..|++|.+.+...++ ....+++||.|
T Consensus 26 ~E~~~vleG~v~it~~~G-~~~~~~aGD~~ 54 (74)
T PF05899_consen 26 DEFFYVLEGEVTITDEDG-ETVTFKAGDAF 54 (74)
T ss_dssp EEEEEEEEEEEEEEETTT-EEEEEETTEEE
T ss_pred CEEEEEEEeEEEEEECCC-CEEEEcCCcEE
Confidence 677899999999998877 56889999966
No 31
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=88.25 E-value=2.8 Score=24.39 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=31.8
Q ss_pred eEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEE
Q psy15589 57 SWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRV 112 (155)
Q Consensus 57 ~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l 112 (155)
.++++++|.+.+. .++ ....+++||.+ -+-.+.+........+ ++.++.+
T Consensus 21 e~~~vl~G~~~~~-~~~-~~~~l~~Gd~~---~i~~~~~H~~~n~~~~-~~~~l~V 70 (71)
T PF07883_consen 21 EFFYVLSGEGTLT-VDG-ERVELKPGDAI---YIPPGVPHQVRNPGDE-PARFLVV 70 (71)
T ss_dssp EEEEEEESEEEEE-ETT-EEEEEETTEEE---EEETTSEEEEEEESSS-EEEEEEE
T ss_pred EEEEEEECCEEEE-Ecc-EEeEccCCEEE---EECCCCeEEEEECCCC-CEEEEEE
Confidence 8999999999999 444 47778998854 2233444444444434 3555543
No 32
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=83.21 E-value=0.28 Score=33.20 Aligned_cols=42 Identities=45% Similarity=0.779 Sum_probs=37.9
Q ss_pred hhhhHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhh
Q psy15589 4 AGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMT 47 (155)
Q Consensus 4 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (155)
||+++++.+..+-|..++++-... ..++.+-.|.++++|+++
T Consensus 1 aG~~l~~~~~~~~~~~ikdR~~~~--~~y~~cF~GsElVdWLl~ 42 (125)
T cd04437 1 AGRALRNAILSDAPHLIRDRKYHL--RTYRQCCVGTELVDWLLQ 42 (125)
T ss_pred CcHHHHHHHHccCcccceeeeECC--EECCcccccHHHHHHHHH
Confidence 689999999999999999886666 788999999999999986
No 33
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=76.27 E-value=16 Score=24.52 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=31.7
Q ss_pred eEEEEEecEEEEE-EecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEE
Q psy15589 57 SWYIIIQGSVDVV-IYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRV 112 (155)
Q Consensus 57 ~lyii~~G~v~v~-~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l 112 (155)
.+++|++|+..+. ..++ ....+++||.+ .+-.+.+...... ++ +.++.+
T Consensus 57 E~~yVL~G~~~~~~i~~g-~~~~L~aGD~i---~~~~~~~H~~~N~--e~-~~~l~v 106 (125)
T PRK13290 57 EAVYCIEGEGEVEDLATG-EVHPIRPGTMY---ALDKHDRHYLRAG--ED-MRLVCV 106 (125)
T ss_pred EEEEEEeCEEEEEEcCCC-EEEEeCCCeEE---EECCCCcEEEEcC--CC-EEEEEE
Confidence 6899999999998 4334 56788999976 3334445443332 53 555544
No 34
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=72.83 E-value=16 Score=26.25 Aligned_cols=56 Identities=18% Similarity=0.356 Sum_probs=36.3
Q ss_pred ccCCeEEEEEecEEEEEEecCe--eEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcH
Q psy15589 53 DEGKSWYIIIQGSVDVVIYGKG--CVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDK 114 (155)
Q Consensus 53 ~~~~~lyii~~G~v~v~~~~~~--~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~ 114 (155)
++.+.++++++|.+.+...+++ ....+++||+| -+-.+.+..-.. .. +|..+.+.+
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~f---llP~gvpHsP~r--~~-~tv~LviE~ 109 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMF---LLPPHVPHSPQR--EA-GSIGLVIER 109 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCceeeEEECCCCEE---EeCCCCCcCCcc--CC-CeEEEEEEe
Confidence 4568999999999999886643 46678999987 333444433322 34 366666644
No 35
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=69.29 E-value=15 Score=25.93 Aligned_cols=56 Identities=14% Similarity=0.322 Sum_probs=36.1
Q ss_pred cCCeEEEEEecEEEEEEecCe--eEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcHH
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKG--CVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDKD 115 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~--~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~ 115 (155)
+.+.++++++|.+.+...+++ ....+++||+| -+..|.+..-. +.. ++.++.+.+.
T Consensus 47 ~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~f---lvP~gvpHsP~--r~~-~t~~LvIE~~ 104 (159)
T TIGR03037 47 PGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIF---LLPPHVPHSPQ--RPA-GSIGLVIERK 104 (159)
T ss_pred CCceEEEEEcceEEEEEEcCCcEEEEEECCCCEE---EeCCCCCcccc--cCC-CcEEEEEEeC
Confidence 368999999999999776654 36778999987 33334443322 224 3666666543
No 36
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=66.41 E-value=25 Score=24.99 Aligned_cols=52 Identities=19% Similarity=0.392 Sum_probs=33.5
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEE
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRV 112 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l 112 (155)
...+++|++|.+.+...+ ....+++||.+ .+-.+.++.......+ ++.++.+
T Consensus 128 ~~E~~~Vl~G~~~~~~~~--~~~~l~~Gd~~---~~~~~~~H~~~n~~~~-~~~~l~~ 179 (185)
T PRK09943 128 GEEIGTVLEGEIVLTING--QDYHLVAGQSY---AINTGIPHSFSNTSAG-ICRIISA 179 (185)
T ss_pred CcEEEEEEEeEEEEEECC--EEEEecCCCEE---EEcCCCCeeeeCCCCC-CeEEEEE
Confidence 458889999999987654 45678999965 3334455544443344 3655554
No 37
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=66.25 E-value=30 Score=23.52 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=24.8
Q ss_pred CCeEEEEEecEEEEEEecCe----eEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~f 85 (155)
...+++|++|...+...+.+ ....+++||.+
T Consensus 51 ~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~ 85 (146)
T smart00835 51 ATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVF 85 (146)
T ss_pred CCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEE
Confidence 56899999999999876542 47788999966
No 38
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=64.24 E-value=32 Score=26.17 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=32.3
Q ss_pred CeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEE
Q psy15589 56 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRV 112 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l 112 (155)
+.+.+|++|++.+...+ ....|++||++ -+-.+.+........+ +++++.+
T Consensus 81 ee~iyVl~G~l~v~~~g--~~~~L~~Gd~~---y~pa~~~H~~~N~~~~-~a~~l~v 131 (260)
T TIGR03214 81 ETFLFVISGEVNVTAEG--ETHELREGGYA---YLPPGSKWTLANAQAE-DARFFLY 131 (260)
T ss_pred EEEEEEEeCEEEEEECC--EEEEECCCCEE---EECCCCCEEEEECCCC-CEEEEEE
Confidence 57999999999998544 34588999966 3334444444333334 3555444
No 39
>PRK11171 hypothetical protein; Provisional
Probab=59.33 E-value=48 Score=25.26 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=34.5
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEE
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRV 112 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l 112 (155)
.+.+++|++|.+.+...+ ....|.+||.+ .+-.+.+........+ .++++.+
T Consensus 83 ~eE~~~VlsG~l~v~~~g--~~~~L~~GDsi---~~p~~~~H~~~N~g~~-~a~~l~v 134 (266)
T PRK11171 83 AETFLFVVEGEITLTLEG--KTHALSEGGYA---YLPPGSDWTLRNAGAE-DARFHWI 134 (266)
T ss_pred ceEEEEEEeCEEEEEECC--EEEEECCCCEE---EECCCCCEEEEECCCC-CEEEEEE
Confidence 358899999999998643 46778999965 3444555554443444 3666555
No 40
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=58.22 E-value=24 Score=23.45 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=25.7
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCeeeh
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGK 87 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe 87 (155)
.+...++++|.+.+... + ....+.+||++-.
T Consensus 64 ~~~~~~Vl~G~~~~~~~-g-~~~~l~~Gd~i~i 94 (131)
T COG1917 64 GEQTIYVLEGEGTVQLE-G-EKKELKAGDVIII 94 (131)
T ss_pred cceEEEEEecEEEEEec-C-CceEecCCCEEEE
Confidence 56888999999999988 4 6777899998743
No 41
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=57.84 E-value=20 Score=25.26 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=26.6
Q ss_pred cccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehh
Q psy15589 52 GDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKL 88 (155)
Q Consensus 52 g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~ 88 (155)
-+.-+.+.+|++|+..+...+. ...++|||+.|-.
T Consensus 61 Hs~edEfv~ILeGE~~l~~d~~--e~~lrpGD~~gFp 95 (161)
T COG3837 61 HSAEDEFVYILEGEGTLREDGG--ETRLRPGDSAGFP 95 (161)
T ss_pred cccCceEEEEEcCceEEEECCe--eEEecCCceeecc
Confidence 3445689999999999877665 5568999987653
No 42
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=54.40 E-value=43 Score=25.36 Aligned_cols=58 Identities=10% Similarity=0.247 Sum_probs=35.0
Q ss_pred ccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCC---------ceeEEEEecCcEEEEEEc
Q psy15589 49 FHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP---------RAATIVTREDNCHFLRVD 113 (155)
Q Consensus 49 ~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~---------~~~~~~a~~~~~~vl~l~ 113 (155)
-......+...+++.|++++...+.. ...++. ..+.|.+.| +..++.|.++ ++|..-.
T Consensus 43 ~~~~~~~E~clV~v~Gk~~vs~~g~~-f~~iG~-----R~SvFe~~p~~~vYvp~g~~~~vtA~t~-~~vAvC~ 109 (270)
T COG3718 43 TEETGDRERCLVLVTGKATVSAHGST-FGEIGT-----RMSVFERKPPDSVYVPAGSAFSVTATTD-LEVAVCS 109 (270)
T ss_pred cccCCCceEEEEEEeeeEEEeeccch-Hhhccc-----ccccccCCCCCeEEecCCceEEEEeecc-eEEEEEe
Confidence 44444567888999999998766552 211221 124555544 4677888885 7665543
No 43
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=53.49 E-value=35 Score=22.74 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=22.6
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
.+.+|+|++|...+...+. ...+++||.+
T Consensus 57 ~dE~~~Vl~G~g~v~~~~~--~~~v~~gd~~ 85 (127)
T COG0662 57 RDEHWYVLEGTGKVTIGGE--EVEVKAGDSV 85 (127)
T ss_pred cceEEEEEeeEEEEEECCE--EEEecCCCEE
Confidence 6899999999999998844 4446777754
No 44
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=50.07 E-value=3.1 Score=26.68 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=35.4
Q ss_pred chhhhHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhh
Q psy15589 3 RAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMT 47 (155)
Q Consensus 3 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (155)
..|+.++..+.+..|+-++++-... ...++|-.|.++++|+.+
T Consensus 7 ~~G~~L~~~l~~~~~~likdR~~~l--~~y~~cFvGsElVdWLi~ 49 (93)
T cd04440 7 SKGVRLYCRLHSLFTPVVKDRDYHL--KTYKSVVPASKLVDWLLA 49 (93)
T ss_pred HHHHHHHHHHHccCccceeeceecc--EEcccccchhHHHHHHHH
Confidence 4677888888888888777776555 788999999999999986
No 45
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=44.99 E-value=1.3e+02 Score=22.73 Aligned_cols=59 Identities=19% Similarity=0.297 Sum_probs=36.8
Q ss_pred cccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcH
Q psy15589 50 HQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDK 114 (155)
Q Consensus 50 ~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~ 114 (155)
+.++..+.+.++++|++.+...+. ...|.+|++. -+-.+...+..-.+.+| +++..+.+
T Consensus 78 e~d~~ae~~lfVv~Ge~tv~~~G~--th~l~eggya---ylPpgs~~~~~N~~~~~-~rfhw~rk 136 (264)
T COG3257 78 EGDEGAETFLFVVSGEITVKAEGK--THALREGGYA---YLPPGSGWTLRNAQKED-SRFHWIRK 136 (264)
T ss_pred CCCCcceEEEEEEeeeEEEEEcCe--EEEeccCCeE---EeCCCCcceEeeccCCc-eEEEEEee
Confidence 344557789999999999987665 4456776532 23334444444445564 77766644
No 46
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=44.53 E-value=49 Score=20.72 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=21.4
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
....+.|++|.|++..... ...+++|+.|
T Consensus 33 ~~~vF~V~~G~v~Vti~~~--~f~v~~G~~F 61 (85)
T PF11699_consen 33 NTMVFYVIKGKVEVTIHET--SFVVTKGGSF 61 (85)
T ss_dssp EEEEEEEEESEEEEEETTE--EEEEETT-EE
T ss_pred cEEEEEEEeCEEEEEEcCc--EEEEeCCCEE
Confidence 4478899999999988665 3446788877
No 47
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=41.78 E-value=1e+02 Score=20.79 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=28.2
Q ss_pred cCCeEEEEEecEEEEEEecCe--eEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHH
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKG--CVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIR 119 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~--~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~ 119 (155)
....++++++|++++...+.. ....|...+ - .+.-.....-.....++++.++.+....+.+
T Consensus 53 ~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~-~---~L~Ippg~w~~~~~~s~~svlLv~as~~yd~ 116 (131)
T PF05523_consen 53 KTTQWFIVLSGSFKVVLDDGREEEEFILDEPN-K---GLYIPPGVWHGIKNFSEDSVLLVLASEPYDE 116 (131)
T ss_dssp S--EEEEEEES-EEEEEE-SS-EEEEEE--TT-E---EEEE-TT-EEEEE---TT-EEEEEESS---G
T ss_pred cccEEEEEEeCEEEEEEecCCCcEEEEECCCC-e---EEEECCchhhHhhccCCCcEEEEEcCCCCCh
Confidence 456889999999999976654 333344433 1 1222222233343444458888887776654
No 48
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=41.34 E-value=98 Score=22.50 Aligned_cols=31 Identities=10% Similarity=0.060 Sum_probs=24.4
Q ss_pred CCeEEEEEecEEEEEEecCe---eEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~---~~~~l~~G~~f 85 (155)
...+|++++|...+...+.+ ....+++|+.+
T Consensus 97 ~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v 130 (191)
T PRK04190 97 RAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVV 130 (191)
T ss_pred CCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEE
Confidence 45899999999999876553 46778999865
No 49
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=41.20 E-value=46 Score=24.56 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=28.8
Q ss_pred ccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcH
Q psy15589 49 FHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDK 114 (155)
Q Consensus 49 ~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~ 114 (155)
-.....+..+.+|++|... + ....+.+|||.=. -.+......+..-+ +|.++.+--
T Consensus 141 p~H~H~G~E~tlVLeG~f~----d--e~g~y~~Gd~i~~---p~~~~H~p~a~~~~-~Cicl~v~d 196 (215)
T TIGR02451 141 PQHTHKGFELTLVLHGAFS----D--ETGVYGVGDFEEA---DGSVQHQPRTVSGG-DCLCLAVLD 196 (215)
T ss_pred CCCcCCCcEEEEEEEEEEE----c--CCCccCCCeEEEC---CCCCCcCcccCCCC-CeEEEEEec
Confidence 3444455667788888853 1 2235677776522 22233333333334 377666543
No 50
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=41.11 E-value=61 Score=21.93 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=23.8
Q ss_pred cCCeEEEEEecEEEEEEecC--------eeEEE--ccCCCee
Q psy15589 54 EGKSWYIIIQGSVDVVIYGK--------GCVTS--LYAGEDF 85 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~--------~~~~~--l~~G~~f 85 (155)
.+..+++|++|+..+..... ..... +++||.|
T Consensus 53 ~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~ 94 (144)
T PF00190_consen 53 NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVF 94 (144)
T ss_dssp SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEE
T ss_pred eeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccce
Confidence 67899999999999755432 13333 9999987
No 51
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=40.18 E-value=71 Score=25.69 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=24.2
Q ss_pred CCeEEEEEecEEEEEEecCe---eEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~---~~~~l~~G~~f 85 (155)
.+.++++++|.+++...+.+ ....+++||.+
T Consensus 266 ~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~ 299 (367)
T TIGR03404 266 ADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVG 299 (367)
T ss_pred CCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEE
Confidence 56899999999999875432 56679999954
No 52
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=39.69 E-value=74 Score=21.24 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=23.0
Q ss_pred CeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 56 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
+.+.-|++|.+.+...++ ..-.+++||.|
T Consensus 64 ~E~chil~G~v~~T~d~G-e~v~~~aGD~~ 92 (116)
T COG3450 64 DEFCHILEGRVEVTPDGG-EPVEVRAGDSF 92 (116)
T ss_pred ceEEEEEeeEEEEECCCC-eEEEEcCCCEE
Confidence 456678999999998887 55668999955
No 53
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=37.30 E-value=87 Score=25.20 Aligned_cols=31 Identities=16% Similarity=0.411 Sum_probs=24.3
Q ss_pred CCeEEEEEecEEEEEEecCe---eEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~---~~~~l~~G~~f 85 (155)
...+.++++|++.+...+.+ ....+++||.|
T Consensus 87 ~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~ 120 (367)
T TIGR03404 87 EAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLW 120 (367)
T ss_pred CceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEE
Confidence 35789999999999987543 34579999976
No 54
>PF12852 Cupin_6: Cupin
Probab=36.87 E-value=81 Score=22.21 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=23.0
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
.-.+|+|.+|...+...+....-.+.+||++
T Consensus 35 ~~~fh~V~~G~~~l~~~~~~~~~~L~~GDiv 65 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRVPGGGEPIRLEAGDIV 65 (186)
T ss_pred ceEEEEEECCeEEEEEcCCCCeEEecCCCEE
Confidence 5799999999999997663344556666644
No 55
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=35.51 E-value=93 Score=23.45 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=21.6
Q ss_pred CeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 56 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
+.+.++++|.+.+... +....++|||++
T Consensus 176 dEi~YVLEGe~~l~Id--G~t~~l~pGDvl 203 (233)
T PRK15457 176 DEIDMVLEGELHVRHE--GETMIAKAGDVM 203 (233)
T ss_pred eEEEEEEEeEEEEEEC--CEEEEeCCCcEE
Confidence 4677899999999885 256778999855
No 56
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=34.49 E-value=1e+02 Score=19.59 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=29.4
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecC-cEEEEEEcHHHHHHHHH
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTRED-NCHFLRVDKDDFIRIMR 122 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~-~~~vl~l~~~~f~~l~~ 122 (155)
+.-.+.++.+|...+...+. ...++||++| -+..+.+........++ ....+.++.+.+..+..
T Consensus 22 ~~~~i~~v~~G~~~~~~~~~--~~~l~~g~~~---li~p~~~H~~~~~~~~~~~~~~i~~~~~~~~~~~~ 86 (136)
T PF02311_consen 22 DFYEIIYVLSGEGTLHIDGQ--EYPLKPGDLF---LIPPGQPHSYYPDSNEPWEYYWIYFSPDFLEELLE 86 (136)
T ss_dssp -SEEEEEEEEE-EEEEETTE--EEEE-TT-EE---EE-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG
T ss_pred CCEEEEEEeCCEEEEEECCE--EEEEECCEEE---EecCCccEEEecCCCCCEEEEEEEECHHHHHHHHH
Confidence 34578899999999855443 4567888765 23333343333333111 23455555555555433
No 57
>COG5458 Uncharacterized conserved protein [Function unknown]
Probab=34.38 E-value=46 Score=22.38 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=22.3
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCeeeh
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGK 87 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe 87 (155)
.+..+|++++|.|.-...-- -+..++.|+-+|.
T Consensus 54 ~GgSLYwViKG~VqcRQ~ll-~Ir~ftd~egigR 86 (144)
T COG5458 54 DGGSLYWVIKGQVQCRQKLL-DIRTFTDGEGIGR 86 (144)
T ss_pred cCCeEEEEEeceeehhhhce-eeeeccCCCccce
Confidence 35689999999998654433 4555666665554
No 58
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=32.61 E-value=1.1e+02 Score=21.48 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=19.5
Q ss_pred CeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 56 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
+.+.+|+.|.+.+... + .....++||.+
T Consensus 96 DEi~~VlEG~L~i~~~-G-~~~~A~~GDvi 123 (152)
T PF06249_consen 96 DEIKYVLEGTLEISID-G-QTVTAKPGDVI 123 (152)
T ss_dssp EEEEEEEEEEEEEEET-T-EEEEEETT-EE
T ss_pred ceEEEEEEeEEEEEEC-C-EEEEEcCCcEE
Confidence 5677899999888744 3 56667888854
No 59
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=32.30 E-value=8.6 Score=24.19 Aligned_cols=42 Identities=33% Similarity=0.546 Sum_probs=33.1
Q ss_pred hhhhHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhh
Q psy15589 4 AGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMT 47 (155)
Q Consensus 4 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (155)
.|+.+...+.+.-+..++++-... ..++.+-.|.++++|+.+
T Consensus 3 ~g~~l~~~~~~~~~~~ik~R~~~~--~~y~~cF~GsElVdWL~~ 44 (85)
T cd04441 3 RGQRLYEKLMSTENSILQVREEEG--VKYERTFVGSEFIDWLLQ 44 (85)
T ss_pred chHHHHHHHHcCCCCceeeeEeCC--EEcCCEeEchHHHHHHHH
Confidence 467777777777777777665555 678889999999999986
No 60
>PRK10579 hypothetical protein; Provisional
Probab=31.12 E-value=1.4e+02 Score=19.13 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=24.7
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCeee
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 86 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fG 86 (155)
......-|++|...+...+.+.-..+.+|+.|-
T Consensus 40 ~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~ 72 (94)
T PRK10579 40 AEPEEMTVISGALNVLLPGATDWQVYEAGEVFN 72 (94)
T ss_pred CCcEEEEEEeeEEEEECCCCcccEEeCCCCEEE
Confidence 344566788888888888876667788888773
No 61
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=31.11 E-value=1.1e+02 Score=21.65 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=20.4
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCe
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGED 84 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~ 84 (155)
-+.+-+|+.|++.+...++..+ -+|||.
T Consensus 118 yDe~d~VlEGrL~V~~~g~tv~--a~aGDv 145 (176)
T COG4766 118 YDEIDYVLEGRLHVRIDGRTVI--AGAGDV 145 (176)
T ss_pred ccceeEEEeeeEEEEEcCCeEe--cCCCcE
Confidence 3566789999999988877544 367763
No 62
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=29.80 E-value=1.3e+02 Score=20.43 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=29.1
Q ss_pred CeEEEEEecEEEEEEecC-eeEEEccCCCeeehhhhhcCCCcee
Q psy15589 56 KSWYIIIQGSVDVVIYGK-GCVTSLYAGEDFGKLALVNNAPRAA 98 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~-~~~~~l~~G~~fGe~~ll~~~~~~~ 98 (155)
+....+++|++.+-..+. +.....++||||=-...+...+...
T Consensus 68 EtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~ 111 (142)
T COG4101 68 ETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPANL 111 (142)
T ss_pred cEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCccccc
Confidence 455678899998876554 2667789999995555554444433
No 63
>KOG3179|consensus
Probab=29.07 E-value=16 Score=27.13 Aligned_cols=63 Identities=13% Similarity=0.229 Sum_probs=37.5
Q ss_pred EccCCCeeehh----hhh-------cCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhhh
Q psy15589 78 SLYAGEDFGKL----ALV-------NNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVLV 140 (155)
Q Consensus 78 ~l~~G~~fGe~----~ll-------~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~~ 140 (155)
...++.+|||+ ++. -..|-.+...|-++.|.+-.+++.+=.=.++.||+....+... ..+++-
T Consensus 134 ~~~~~~yFG~~~~~l~IikcHqDevle~PE~a~llasSe~ceve~fs~~~~~l~fQGHPEyn~eil~~ivdrv~~ 208 (245)
T KOG3179|consen 134 AEKPEKYFGEIPKSLNIIKCHQDEVLELPEGAELLASSEKCEVEMFSIEDHLLCFQGHPEYNKEILFEIVDRVLG 208 (245)
T ss_pred cccchhhcccchhhhhHHhhcccceecCCchhhhhccccccceEEEEecceEEEecCCchhhHHHHHHHHHHHhc
Confidence 34889999965 222 2245556666666666666666555444667888887644433 444443
No 64
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=28.44 E-value=1.2e+02 Score=19.54 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=22.2
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCeeeh
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGK 87 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe 87 (155)
.....-|++|..++...+.+.-..+.+|+.|--
T Consensus 41 ~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~V 73 (94)
T PF06865_consen 41 APERMEVVSGELEVKLPGEDEWQTYSAGESFEV 73 (94)
T ss_dssp S-EEEEEEESEEEEEETT-SS-EEEETT-EEEE
T ss_pred CCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEE
Confidence 445667888999988887766777888887743
No 65
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=26.55 E-value=66 Score=20.57 Aligned_cols=57 Identities=19% Similarity=0.308 Sum_probs=31.2
Q ss_pred ccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEe-cCcEEEEEEcHHHHHH
Q psy15589 53 DEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTR-EDNCHFLRVDKDDFIR 119 (155)
Q Consensus 53 ~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~-~~~~~vl~l~~~~f~~ 119 (155)
..-+.+.++++|.+.+-... ..+.+|+ +.++. ......+.+. + .++++.+..+.+.+
T Consensus 18 ~~~~~~iyv~~G~~~v~~~~----~~~~~~~----~~~l~-~g~~i~~~a~~~-~a~~lll~GePl~E 75 (104)
T PF05726_consen 18 PGHNAFIYVLEGSVEVGGEE----DPLEAGQ----LVVLE-DGDEIELTAGEE-GARFLLLGGEPLNE 75 (104)
T ss_dssp TT-EEEEEEEESEEEETTTT----EEEETTE----EEEE--SECEEEEEESSS-SEEEEEEEE----S
T ss_pred CCCEEEEEEEECcEEECCCc----ceECCCc----EEEEC-CCceEEEEECCC-CcEEEEEEccCCCC
Confidence 33568889999998763332 2233332 22233 3345566777 5 59999999988886
No 66
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=24.98 E-value=1.8e+02 Score=20.40 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=21.5
Q ss_pred ccCCeEEEEEecEEEEEEecCe--eEEEccCCCee
Q psy15589 53 DEGKSWYIIIQGSVDVVIYGKG--CVTSLYAGEDF 85 (155)
Q Consensus 53 ~~~~~lyii~~G~v~v~~~~~~--~~~~l~~G~~f 85 (155)
++.+.++.-++|.+.+....++ .--.+++|+.|
T Consensus 51 ne~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~f 85 (151)
T PF06052_consen 51 NETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMF 85 (151)
T ss_dssp -SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEE
T ss_pred CCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEE
Confidence 3456888999999998876654 34556888877
No 67
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=24.14 E-value=2.6e+02 Score=23.50 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=31.7
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEE
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRV 112 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l 112 (155)
....++|++|.+.+...+. ...+++||.+ .+-.+.++.......+ +++++.+
T Consensus 406 ~~E~~~VlsG~~~v~idg~--~~~L~~GDSi---~ip~g~~H~~~N~g~~-~l~iI~V 457 (478)
T PRK15460 406 RAEHWVVVAGTAKVTIDGD--IKLLGENESI---YIPLGATHCLENPGKI-PLDLIEV 457 (478)
T ss_pred CceEEEEEeeEEEEEECCE--EEEecCCCEE---EECCCCcEEEEcCCCC-CEEEEEE
Confidence 3477789999999987765 4667888855 3334445433333333 3554443
No 68
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=22.85 E-value=2.7e+02 Score=23.12 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=21.5
Q ss_pred CeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 56 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
+..++|++|.+.+...+. ...+++||.+
T Consensus 398 ~E~~~Vl~G~~~v~~dg~--~~~l~~GDsi 425 (468)
T TIGR01479 398 AEHWIVVSGTARVTIGDE--TLLLTENEST 425 (468)
T ss_pred ceEEEEEeeEEEEEECCE--EEEecCCCEE
Confidence 345689999999987654 4578999865
No 69
>KOG4410|consensus
Probab=22.62 E-value=3.9e+02 Score=21.07 Aligned_cols=62 Identities=24% Similarity=0.476 Sum_probs=39.2
Q ss_pred ccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehh--hhhc--C--CCceeEEEEecCcEEEEE-EcHHHHHH
Q psy15589 53 DEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKL--ALVN--N--APRAATIVTREDNCHFLR-VDKDDFIR 119 (155)
Q Consensus 53 ~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~--~ll~--~--~~~~~~~~a~~~~~~vl~-l~~~~f~~ 119 (155)
|..-.+-+|+-|.|.++..+ ..++.|+-|.++ +++- | .+.+--+..+-| |.+.- ||.+-|+.
T Consensus 153 Ds~lkvDlvViGSVavs~~G----~RiGkGeGfAdLeygmli~mGAi~~~TpvVTiVHD-cQvVD~iP~el~~~ 221 (396)
T KOG4410|consen 153 DSGLKVDLVVIGSVAVSREG----YRIGKGEGFADLEYGMLIEMGAITPKTPVVTIVHD-CQVVDSIPPELFQK 221 (396)
T ss_pred ccCceEEEEEEeeEEecccc----eeeccCCchhhhhhHHHHHhcccCCCCceEEEEec-ceeeccCCHHHHhh
Confidence 44557788999999998433 356888888764 3332 1 334444445554 77766 77776664
No 70
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=21.65 E-value=2.3e+02 Score=21.61 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=33.9
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCeeehh--hhhcCCCceeEEEEecCcEEEEEEc
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKL--ALVNNAPRAATIVTREDNCHFLRVD 113 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~--~ll~~~~~~~~~~a~~~~~~vl~l~ 113 (155)
.-+...++++|.+.+...+.+....-+.-+.|.+. ++--.......+.|.++ ++++...
T Consensus 46 ~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~-ae~~~~s 106 (261)
T PF04962_consen 46 RRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFASTD-AEFAVCS 106 (261)
T ss_dssp SEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEESST-EEEEEEE
T ss_pred CcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEEEcCC-CEEEEEc
Confidence 35577888999999988664334444445555432 22233344567777774 8877653
Done!