Query psy15589
Match_columns 155
No_of_seqs 116 out of 1179
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 16:27:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15589.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15589hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mdp_A Cyclic nucleotide-bindi 99.8 3.2E-20 1.1E-24 125.9 9.6 125 4-138 5-136 (142)
2 2ptm_A Hyperpolarization-activ 99.8 1.3E-19 4.6E-24 130.2 8.5 120 6-135 72-191 (198)
3 3gyd_A CNMP-BD protein, cyclic 99.8 4.6E-19 1.6E-23 126.6 9.6 130 7-146 41-179 (187)
4 2pqq_A Putative transcriptiona 99.8 3.3E-19 1.1E-23 121.7 8.4 127 6-142 6-137 (149)
5 4f8a_A Potassium voltage-gated 99.8 3E-19 1E-23 123.5 8.0 119 9-138 31-151 (160)
6 3bpz_A Potassium/sodium hyperp 99.8 2.5E-19 8.5E-24 129.2 7.7 123 7-140 74-197 (202)
7 2gau_A Transcriptional regulat 99.8 6.2E-19 2.1E-23 129.1 9.3 122 3-134 8-133 (232)
8 3ukn_A Novel protein similar t 99.8 5.1E-19 1.7E-23 128.4 8.4 121 7-138 77-199 (212)
9 2z69_A DNR protein; beta barre 99.8 5.4E-19 1.9E-23 121.3 8.1 124 7-140 14-143 (154)
10 3idb_B CAMP-dependent protein 99.8 2.2E-19 7.5E-24 124.9 6.1 116 7-132 40-158 (161)
11 3e97_A Transcriptional regulat 99.8 1.5E-18 5.2E-23 127.0 10.6 127 3-139 4-135 (231)
12 4ev0_A Transcription regulator 99.8 1.4E-18 4.9E-23 125.7 10.3 116 9-134 3-122 (216)
13 3ocp_A PRKG1 protein; serine/t 99.8 3.4E-19 1.2E-23 121.0 6.4 115 6-131 24-138 (139)
14 1vp6_A CNBD, cyclic-nucleotide 99.8 5.4E-19 1.9E-23 119.5 6.8 117 7-136 13-129 (138)
15 3pna_A CAMP-dependent protein 99.8 7.6E-19 2.6E-23 121.4 6.8 114 7-131 40-153 (154)
16 3dn7_A Cyclic nucleotide bindi 99.8 2.4E-18 8.1E-23 122.8 9.5 117 9-135 11-132 (194)
17 3fx3_A Cyclic nucleotide-bindi 99.8 3.3E-18 1.1E-22 125.6 10.1 126 7-142 13-143 (237)
18 3d0s_A Transcriptional regulat 99.7 1.8E-18 6.2E-23 126.2 7.1 119 6-134 7-129 (227)
19 3dv8_A Transcriptional regulat 99.7 1.2E-17 4E-22 121.1 10.3 116 9-134 7-128 (220)
20 1zyb_A Transcription regulator 99.7 1.2E-17 4.1E-22 122.6 10.3 132 4-143 17-154 (232)
21 3iwz_A CAP-like, catabolite ac 99.7 1.4E-17 4.8E-22 121.5 10.5 116 9-134 15-140 (230)
22 1o7f_A CAMP-dependent RAP1 gua 99.7 6.9E-18 2.4E-22 135.3 7.3 127 8-143 340-467 (469)
23 3ryp_A Catabolite gene activat 99.7 2.9E-17 9.9E-22 118.3 9.5 113 12-134 3-120 (210)
24 3shr_A CGMP-dependent protein 99.7 1E-17 3.5E-22 127.1 6.6 125 9-143 161-291 (299)
25 3dkw_A DNR protein; CRP-FNR, H 99.7 4.6E-18 1.6E-22 123.9 4.4 120 5-134 9-133 (227)
26 2qcs_B CAMP-dependent protein 99.7 3.5E-17 1.2E-21 123.5 9.4 125 7-142 41-166 (291)
27 3of1_A CAMP-dependent protein 99.7 2.4E-17 8.3E-22 121.1 8.2 112 9-130 129-240 (246)
28 2oz6_A Virulence factor regula 99.7 6.1E-17 2.1E-21 116.3 10.0 109 16-134 1-117 (207)
29 4ava_A Lysine acetyltransferas 99.7 2.1E-17 7.3E-22 127.2 8.1 120 7-137 15-137 (333)
30 3of1_A CAMP-dependent protein 99.7 5.7E-18 1.9E-22 124.5 4.5 123 7-140 9-132 (246)
31 1wgp_A Probable cyclic nucleot 99.7 2.7E-18 9.2E-23 116.0 1.9 114 5-128 6-133 (137)
32 1o5l_A Transcriptional regulat 99.7 7.3E-17 2.5E-21 117.0 8.8 122 10-141 4-131 (213)
33 3shr_A CGMP-dependent protein 99.7 5.8E-17 2E-21 122.9 8.6 126 7-143 41-167 (299)
34 4din_B CAMP-dependent protein 99.7 2.7E-17 9.1E-22 129.5 6.5 126 7-143 132-258 (381)
35 3kcc_A Catabolite gene activat 99.7 1.7E-16 6E-21 118.5 9.8 111 14-134 55-170 (260)
36 3tnp_B CAMP-dependent protein 99.7 5.6E-17 1.9E-21 129.1 7.0 124 8-141 148-275 (416)
37 4din_B CAMP-dependent protein 99.7 8E-17 2.7E-21 126.8 7.6 121 9-139 252-377 (381)
38 2qcs_B CAMP-dependent protein 99.7 1.1E-16 3.8E-21 120.7 7.6 116 9-134 161-281 (291)
39 4f7z_A RAP guanine nucleotide 99.7 1.9E-17 6.6E-22 143.8 3.5 129 9-146 341-470 (999)
40 2d93_A RAP guanine nucleotide 99.7 2.7E-17 9.1E-22 111.0 2.4 110 6-126 17-128 (134)
41 2fmy_A COOA, carbon monoxide o 99.6 4.3E-16 1.5E-20 113.1 8.5 110 8-134 7-119 (220)
42 3tnp_B CAMP-dependent protein 99.6 2.5E-16 8.6E-21 125.3 6.1 116 9-134 271-396 (416)
43 3e6c_C CPRK, cyclic nucleotide 99.6 1E-15 3.5E-20 113.3 8.4 114 14-140 18-136 (250)
44 3la7_A Global nitrogen regulat 99.6 2.8E-15 9.6E-20 110.7 10.2 106 19-134 31-145 (243)
45 1ft9_A Carbon monoxide oxidati 99.6 9.4E-16 3.2E-20 111.6 6.9 109 9-134 4-115 (222)
46 2bgc_A PRFA; bacterial infecti 99.6 5.7E-15 2E-19 108.6 9.7 111 15-134 3-120 (238)
47 1o7f_A CAMP-dependent RAP1 gua 99.6 6.8E-16 2.3E-20 123.8 5.0 116 7-133 44-165 (469)
48 3beh_A MLL3241 protein; transm 99.6 2.4E-16 8.1E-21 122.9 0.0 116 9-137 232-347 (355)
49 4f7z_A RAP guanine nucleotide 99.6 4.1E-15 1.4E-19 129.3 7.5 112 9-131 46-163 (999)
50 3cf6_E RAP guanine nucleotide 99.6 4E-16 1.4E-20 131.2 0.6 127 7-143 34-162 (694)
51 3b02_A Transcriptional regulat 99.5 1.6E-14 5.6E-19 103.1 7.7 87 33-134 2-92 (195)
52 2zcw_A TTHA1359, transcription 99.3 1.7E-12 5.7E-17 93.0 5.7 77 32-118 7-89 (202)
53 3lwc_A Uncharacterized protein 82.1 7.6 0.00026 24.7 7.1 42 54-100 58-99 (119)
54 4axo_A EUTQ, ethanolamine util 79.0 9.2 0.00032 25.7 6.9 29 55-85 84-112 (151)
55 1o5u_A Novel thermotoga mariti 78.8 3.6 0.00012 25.5 4.5 31 54-85 48-78 (101)
56 2opk_A Hypothetical protein; p 78.5 6.5 0.00022 24.5 5.8 44 53-99 51-94 (112)
57 2vpv_A Protein MIF2, MIF2P; nu 76.0 5 0.00017 27.5 4.9 52 54-111 109-160 (166)
58 3es4_A Uncharacterized protein 75.9 2.4 8.1E-05 27.4 3.1 30 55-85 61-90 (116)
59 3h8u_A Uncharacterized conserv 75.9 5.8 0.0002 24.9 5.0 51 56-111 61-111 (125)
60 3rns_A Cupin 2 conserved barre 75.7 9 0.00031 27.1 6.5 56 49-112 51-106 (227)
61 3bcw_A Uncharacterized protein 75.5 3 0.0001 27.0 3.5 39 56-98 69-107 (123)
62 3d0j_A Uncharacterized protein 75.5 4.4 0.00015 27.0 4.3 61 49-115 44-110 (140)
63 2i45_A Hypothetical protein; n 75.0 5.8 0.0002 24.2 4.8 55 56-117 49-103 (107)
64 3es1_A Cupin 2, conserved barr 74.9 4.3 0.00015 27.9 4.4 30 55-85 99-128 (172)
65 2pyt_A Ethanolamine utilizatio 69.6 7.3 0.00025 25.4 4.4 29 55-85 75-103 (133)
66 2bnm_A Epoxidase; oxidoreducta 68.7 13 0.00046 25.3 5.9 55 54-112 139-196 (198)
67 1yfu_A 3-hydroxyanthranilate-3 68.1 9.3 0.00032 26.4 4.7 41 54-97 54-96 (174)
68 3d82_A Cupin 2, conserved barr 67.1 17 0.00058 21.4 5.6 50 56-113 51-100 (102)
69 4b29_A Dimethylsulfoniopropion 64.9 6.7 0.00023 28.1 3.7 42 54-99 151-192 (217)
70 3ibm_A Cupin 2, conserved barr 63.6 29 0.001 23.2 6.7 30 54-85 75-104 (167)
71 2f4p_A Hypothetical protein TM 63.0 20 0.00069 23.4 5.6 53 55-112 68-120 (147)
72 1dgw_A Canavalin; duplicated s 62.7 10 0.00034 25.9 4.2 34 52-85 58-93 (178)
73 1v70_A Probable antibiotics sy 61.7 17 0.00057 21.3 4.8 28 56-85 50-77 (105)
74 2o8q_A Hypothetical protein; c 60.5 15 0.00051 23.2 4.6 40 56-99 65-104 (134)
75 1zvf_A 3-hydroxyanthranilate 3 60.3 14 0.00048 25.5 4.5 56 53-114 52-113 (176)
76 2ozj_A Cupin 2, conserved barr 60.1 26 0.0009 21.3 7.7 51 53-111 56-106 (114)
77 2b8m_A Hypothetical protein MJ 60.0 13 0.00046 22.8 4.2 31 54-85 46-76 (117)
78 3l2h_A Putative sugar phosphat 59.8 20 0.00068 23.6 5.2 30 54-85 67-96 (162)
79 2fqp_A Hypothetical protein BP 59.6 8.4 0.00029 23.1 3.0 29 57-85 41-69 (97)
80 2gu9_A Tetracenomycin polyketi 59.3 20 0.0007 21.4 4.9 29 55-85 44-72 (113)
81 1rc6_A Hypothetical protein YL 59.0 21 0.00072 25.7 5.6 52 55-112 81-132 (261)
82 3fjs_A Uncharacterized protein 58.7 29 0.001 21.4 5.8 48 54-109 55-102 (114)
83 1lr5_A Auxin binding protein 1 57.9 27 0.00093 22.9 5.7 31 55-85 61-98 (163)
84 2pfw_A Cupin 2, conserved barr 57.6 16 0.00056 22.2 4.3 50 55-112 54-103 (116)
85 3i7d_A Sugar phosphate isomera 57.6 20 0.00069 23.9 5.0 28 56-85 66-93 (163)
86 2oa2_A BH2720 protein; 1017534 57.1 22 0.00076 23.0 5.0 41 55-98 64-108 (148)
87 3ht1_A REMF protein; cupin fol 56.6 25 0.00086 22.2 5.2 31 55-85 59-89 (145)
88 1sfn_A Conserved hypothetical 55.4 36 0.0012 24.3 6.3 50 55-112 68-117 (246)
89 3myx_A Uncharacterized protein 55.1 16 0.00055 26.5 4.3 30 55-85 186-215 (238)
90 1vj2_A Novel manganese-contain 53.7 28 0.00095 21.8 5.0 29 55-85 68-96 (126)
91 3jzv_A Uncharacterized protein 53.6 47 0.0016 22.2 7.0 29 55-85 73-101 (166)
92 1sef_A Conserved hypothetical 53.1 21 0.00073 25.9 4.8 52 55-112 84-135 (274)
93 1o4t_A Putative oxalate decarb 52.0 25 0.00084 22.4 4.5 28 56-85 79-106 (133)
94 1fi2_A Oxalate oxidase, germin 51.5 50 0.0017 22.7 6.4 31 55-85 93-129 (201)
95 2q1z_B Anti-sigma factor CHRR, 51.4 15 0.0005 25.6 3.5 54 49-112 139-192 (195)
96 1juh_A Quercetin 2,3-dioxygena 51.1 41 0.0014 25.5 6.3 67 49-121 266-334 (350)
97 1x82_A Glucose-6-phosphate iso 50.3 41 0.0014 23.0 5.7 30 56-85 97-129 (190)
98 3kgz_A Cupin 2 conserved barre 50.0 38 0.0013 22.4 5.4 29 55-85 64-92 (156)
99 1y9q_A Transcriptional regulat 49.8 35 0.0012 23.0 5.3 29 55-85 126-154 (192)
100 3cew_A Uncharacterized cupin p 49.6 34 0.0012 21.1 4.9 28 56-85 49-76 (125)
101 4i4a_A Similar to unknown prot 49.0 45 0.0015 20.6 8.2 66 54-124 53-119 (128)
102 1sq4_A GLXB, glyoxylate-induce 46.9 28 0.00097 25.5 4.6 29 55-85 90-118 (278)
103 4e2g_A Cupin 2 conserved barre 46.9 25 0.00087 21.7 3.9 29 55-85 61-89 (126)
104 1yhf_A Hypothetical protein SP 46.9 35 0.0012 20.6 4.5 29 55-85 60-88 (115)
105 2vqa_A SLL1358 protein, MNCA; 45.0 49 0.0017 24.8 5.9 31 55-85 73-106 (361)
106 3myx_A Uncharacterized protein 44.3 36 0.0012 24.6 4.7 30 54-85 64-93 (238)
107 3h7j_A Bacilysin biosynthesis 44.0 52 0.0018 23.3 5.6 55 54-113 53-107 (243)
108 2d40_A Z3393, putative gentisa 43.3 44 0.0015 25.4 5.4 62 54-120 119-180 (354)
109 2q30_A Uncharacterized protein 42.9 20 0.00068 21.5 2.8 29 56-85 55-84 (110)
110 4e2q_A Ureidoglycine aminohydr 41.9 17 0.00059 26.8 2.7 54 53-113 88-141 (266)
111 1j58_A YVRK protein; cupin, de 41.1 69 0.0024 24.3 6.2 53 56-112 279-334 (385)
112 2ea7_A 7S globulin-1; beta bar 39.2 34 0.0012 27.0 4.2 34 52-85 78-113 (434)
113 2cav_A Protein (canavalin); vi 38.9 34 0.0012 27.1 4.2 34 52-85 103-138 (445)
114 3bu7_A Gentisate 1,2-dioxygena 38.4 1.2E+02 0.0042 23.5 7.2 61 55-121 314-375 (394)
115 1y3t_A Hypothetical protein YX 38.1 55 0.0019 24.1 5.1 62 55-122 239-300 (337)
116 2qnk_A 3-hydroxyanthranilate 3 37.8 45 0.0015 24.9 4.4 57 52-114 48-106 (286)
117 3fz3_A Prunin; TREE NUT allerg 37.2 51 0.0017 26.9 4.9 31 55-85 415-449 (531)
118 3s7i_A Allergen ARA H 1, clone 37.1 39 0.0013 26.6 4.2 37 49-85 58-96 (418)
119 2vqa_A SLL1358 protein, MNCA; 36.5 48 0.0016 24.9 4.6 30 56-85 256-288 (361)
120 1uij_A Beta subunit of beta co 35.1 40 0.0014 26.4 4.0 34 52-85 66-101 (416)
121 1fxz_A Glycinin G1; proglycini 33.1 65 0.0022 25.8 5.0 31 55-85 359-393 (476)
122 1j58_A YVRK protein; cupin, de 32.9 57 0.002 24.7 4.6 42 55-99 99-143 (385)
123 2lh0_A Histone chaperone RTT10 32.4 32 0.0011 20.0 2.3 32 12-47 8-39 (70)
124 3c3v_A Arachin ARAH3 isoform; 32.1 68 0.0023 25.9 5.0 31 55-85 393-427 (510)
125 1juh_A Quercetin 2,3-dioxygena 32.0 65 0.0022 24.3 4.7 31 55-85 71-104 (350)
126 2e9q_A 11S globulin subunit be 31.8 70 0.0024 25.4 4.9 32 54-85 342-377 (459)
127 2d5f_A Glycinin A3B4 subunit; 31.7 70 0.0024 25.7 4.9 31 55-85 388-422 (493)
128 3bu7_A Gentisate 1,2-dioxygena 30.8 47 0.0016 25.9 3.7 31 54-85 142-172 (394)
129 1vr3_A Acireductone dioxygenas 30.7 1.3E+02 0.0046 20.8 5.9 40 55-97 104-146 (191)
130 2qnk_A 3-hydroxyanthranilate 3 29.9 93 0.0032 23.2 5.0 51 56-114 227-277 (286)
131 2d40_A Z3393, putative gentisa 29.8 1.8E+02 0.0062 21.9 7.5 59 54-120 287-345 (354)
132 2oyz_A UPF0345 protein VPA0057 28.6 81 0.0028 19.3 3.8 33 54-86 40-72 (94)
133 3kgl_A Cruciferin; 11S SEED gl 28.0 91 0.0031 24.9 5.0 32 54-85 343-378 (466)
134 3ksc_A LEGA class, prolegumin; 26.7 97 0.0033 25.0 5.0 32 54-85 378-413 (496)
135 3hqx_A UPF0345 protein aciad03 26.6 96 0.0033 19.6 4.0 33 54-86 56-88 (111)
136 4h7l_A Uncharacterized protein 25.7 53 0.0018 22.1 2.8 29 55-85 66-96 (157)
137 2phl_A Phaseolin; plant SEED s 24.2 87 0.003 24.4 4.2 32 54-85 259-300 (397)
138 3qac_A 11S globulin SEED stora 23.9 1.2E+02 0.004 24.2 4.9 32 54-85 343-378 (465)
139 2e9q_A 11S globulin subunit be 23.7 1.5E+02 0.0052 23.5 5.6 34 52-85 80-137 (459)
140 3eo6_A Protein of unknown func 23.6 1.1E+02 0.0037 19.2 3.7 33 53-85 52-84 (106)
141 3lag_A Uncharacterized protein 23.4 18 0.0006 22.0 0.1 31 55-85 38-69 (98)
142 2qjv_A Uncharacterized IOLB-li 22.9 1.5E+02 0.0053 21.7 5.1 57 55-113 49-109 (270)
143 2o1q_A Putative acetyl/propion 22.5 39 0.0013 22.0 1.7 37 49-87 58-96 (145)
144 2xlg_A SLL1785 protein, CUCA; 21.2 47 0.0016 23.9 2.0 31 55-85 64-112 (239)
No 1
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.83 E-value=3.2e-20 Score=125.93 Aligned_cols=125 Identities=11% Similarity=0.171 Sum_probs=108.6
Q ss_pred hhhhHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----e---E
Q psy15589 4 AGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----C---V 76 (155)
Q Consensus 4 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~---~ 76 (155)
...+-+.++|..+++...+.+... ...+.+.+|+.+ +.+|++++++|+|++|.++++..+.+ . +
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~ 75 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALI--SEEKSFPTGSVI-------FKENSKADNLMLLLEGGVELFYSNGGAGSAANSTV 75 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHT--EEEEEECTTCEE-------ECTTSBCCEEEEEEESCEEEECC---------CEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHh--hcEEecCCCCEE-------EeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeE
Confidence 344567899999999999997766 677789999999 99999999999999999999875543 5 8
Q ss_pred EEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHhchhh
Q psy15589 77 TSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKDV 138 (155)
Q Consensus 77 ~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~~~~~ 138 (155)
..+++|++||+.+++.+.++.++++|.++ |.++.+++++|.+++.++|.+...+.+.+.+.
T Consensus 76 ~~~~~G~~fG~~~~~~~~~~~~~~~a~~~-~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~ 136 (142)
T 3mdp_A 76 CSVVPGAIFGVSSLIKPYHYTSSARATKP-VRVVDINGARLREMSENNQALGQVLMNNVAAA 136 (142)
T ss_dssp EEECTTCEECGGGSSTTCBCSSEEEESSC-EEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEecCCCEechHHHcCCCCceEEEEECCc-EEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 99999999999999999999999999995 99999999999999999999998887774443
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.80 E-value=1.3e-19 Score=130.15 Aligned_cols=120 Identities=18% Similarity=0.301 Sum_probs=101.3
Q ss_pred hhHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 6 WVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 6 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
.+-..++|..+|+.....+... .....+.+|+.+ +.+|+.++.+|+|.+|.|+++..++..+..+++|++|
T Consensus 72 ~l~~~~~f~~l~~~~l~~l~~~--~~~~~~~~ge~I-------~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~f 142 (198)
T 2ptm_A 72 LVASVPFFVGADSNFVTRVVTL--LEFEVFQPADYV-------IQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYF 142 (198)
T ss_dssp HHHHCGGGTTCCHHHHHHHHHH--CEEEEECTTCEE-------ECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEE
T ss_pred HHhcCcchhcCCHHHHHHHHHh--ccceeeCCCCEE-------EECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEe
Confidence 3345567777777766665444 344557777777 9999999999999999999998555488999999999
Q ss_pred ehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHhc
Q psy15589 86 GKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHG 135 (155)
Q Consensus 86 Ge~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~~ 135 (155)
||.+++.+.+++++++|.++ |.++.|++++|.+++.++|.+...+.+.+
T Consensus 143 Ge~~~~~~~~~~~~~~a~~~-~~l~~i~~~~f~~ll~~~p~~~~~~~~~~ 191 (198)
T 2ptm_A 143 GEICLLTRERRVASVKCETY-CTLFSLSVQHFNQVLDEFPAMRKTMEEIA 191 (198)
T ss_dssp SCHHHHHSSCCSSEEEESSC-EEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred chHHHcCCCccceEEEEeeE-EEEEEEeHHHHHHHHHHChHHHHHHHHHH
Confidence 99999999999999999995 99999999999999999999998887763
No 3
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.79 E-value=4.6e-19 Score=126.61 Aligned_cols=130 Identities=17% Similarity=0.229 Sum_probs=111.6
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCC
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAG 82 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G 82 (155)
+-..++|..+++...+.+... ...+.+.+|+.+ +.+|++++++|+|++|.++++..+.+ .+..+++|
T Consensus 41 L~~~~~f~~l~~~~l~~l~~~--~~~~~~~~ge~i-------~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G 111 (187)
T 3gyd_A 41 VNKIKLFGDFSNEEVRYLCSY--MQCYAAPRDCQL-------LTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAG 111 (187)
T ss_dssp HTTCCSSCCCCHHHHHHHHTT--CEEEEECTTCEE-------ECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETT
T ss_pred HhcCHhhhcCCHHHHHHHHHh--cEEEEeCCCCEE-------EcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCC
Confidence 446789999999999997666 677789999999 99999999999999999999987643 78899999
Q ss_pred CeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHH----Hh-chhhhhhhhhhc
Q psy15589 83 EDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLK----EH-GKDVLVLERMVN 146 (155)
Q Consensus 83 ~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~----~~-~~~~~~~~~~~~ 146 (155)
++||+.+++.+.++.++++|.+ +|.++.+++++|.+++.++|.+...+. +. +.++..+.++-.
T Consensus 112 ~~fGe~~~l~~~~~~~~v~A~~-~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~rl~~~~~~l~ 179 (187)
T 3gyd_A 112 AIIGEMSMIDGMPRSASCVASL-PTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLLTARFRESYDRIL 179 (187)
T ss_dssp CEESHHHHHHCCCCSSEEEEEE-EEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CeeeeHHHhCCCCeeEEEEECC-CeEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 599999999999999999999987776 33 455555544443
No 4
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.79 E-value=3.3e-19 Score=121.67 Aligned_cols=127 Identities=19% Similarity=0.267 Sum_probs=110.2
Q ss_pred hhHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccC
Q psy15589 6 WVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYA 81 (155)
Q Consensus 6 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~ 81 (155)
.+-..++|..+++...+.+... ...+.+.+|+.+ +.+|++++++|+|++|.++++..+.+ .+..+++
T Consensus 6 ~l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~ 76 (149)
T 2pqq_A 6 VLRRNPLFAALDDEQSAELRAS--MSEVTLARGDTL-------FHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGP 76 (149)
T ss_dssp GGTSSTTTTTCCHHHHHHHHHH--CEEEEECTTCEE-------ECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECT
T ss_pred HhhhChhhhcCCHHHHHHHHHh--ceEEEeCCCCEE-------ECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCC
Confidence 3446789999999999987665 566789999999 99999999999999999999986543 7899999
Q ss_pred CCeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhhhhh
Q psy15589 82 GEDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVLVLE 142 (155)
Q Consensus 82 G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~~~~ 142 (155)
|++||+.+++.+.++.+++.|.++ |.++.+|+++|.+++.++|.+...+.+. ..+.....
T Consensus 77 g~~~G~~~~~~~~~~~~~~~a~~~-~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~ 137 (149)
T 2pqq_A 77 SELIGELSLFDPGPRTATGTALTE-VKLLALGHGDLQPWLNVRPEVATALLRAVARRLRKTN 137 (149)
T ss_dssp TCEESGGGGTSCEECSSEEEESSC-EEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHHHH
T ss_pred cCEechHHhcCCCCcceEEEEccc-eEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999995 9999999999999999999999888877 44444333
No 5
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.79 E-value=3e-19 Score=123.48 Aligned_cols=119 Identities=17% Similarity=0.233 Sum_probs=105.6
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehh
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKL 88 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~ 88 (155)
..++|.++++...+.+... ...+.+.+|+.+ +.+|++++++|+|.+|.++++... ..+..+++|++||+.
T Consensus 31 ~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~g~~~~~~y~i~~G~v~~~~~~-~~~~~~~~G~~fG~~ 100 (160)
T 4f8a_A 31 EHPAFRLASDGCLRALAME--FQTVHCAPGDLI-------YHAGESVDSLCFVVSGSLEVIQDD-EVVAILGKGDVFGDV 100 (160)
T ss_dssp TCGGGTTCCHHHHHHHHTT--CEEEEECTTCEE-------ECTTSBCCEEEEEEESEEEEEETT-EEEEEEETTCEEECC
T ss_pred hCHhhhhCCHHHHHHHHHh--ceeeeeCCCCEE-------EeCCCCccEEEEEEeeEEEEEECC-EEEEEecCCCEeCcH
Confidence 5688899999888887666 566778888888 999999999999999999998843 389999999999999
Q ss_pred hhhcC--CCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHhchhh
Q psy15589 89 ALVNN--APRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKDV 138 (155)
Q Consensus 89 ~ll~~--~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~~~~~ 138 (155)
+++.+ .++.++++|.++ |.++.+++++|.++++++|.+...+.+.+...
T Consensus 101 ~~~~~~~~~~~~~~~a~~~-~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 151 (160)
T 4f8a_A 101 FWKEATLAQSCANVRALTY-CDLHVIKRDALQKVLEFYTAFSHSFSRNLILT 151 (160)
T ss_dssp TTTCSSCCBCSSEEEESSC-EEEEEEEHHHHHHHHHHCHHHHHHHHHHCCCS
T ss_pred HHhcCcccceEEEEEECCc-eEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 689999999995 99999999999999999999999888775433
No 6
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.78 E-value=2.5e-19 Score=129.20 Aligned_cols=123 Identities=18% Similarity=0.282 Sum_probs=100.2
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeee
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 86 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fG 86 (155)
+-..++|.++++.....+... .....+.+|+.+ +.+|++++.+|+|.+|.|+++..++ ...++++|++||
T Consensus 74 l~~~~~f~~l~~~~l~~l~~~--~~~~~~~~ge~I-------~~~g~~~~~ly~I~~G~v~v~~~~g-~~~~l~~G~~fG 143 (202)
T 3bpz_A 74 VASMPLFANADPNFVTAMLTK--LKFEVFQPGDYI-------IREGTIGKKMYFIQHGVVSVLTKGN-KEMKLSDGSYFG 143 (202)
T ss_dssp HHTCHHHHTSCHHHHHHHHHH--CEEEEECTTCEE-------ECTTSBCCEEEEEEECEEEEECTTS-CCEEEETTCEEC
T ss_pred HhcCCchhcCCHHHHHHHHHh--CCceEECCCCEE-------EECCCcCCeEEEEeccEEEEEECCC-eEEEEcCCCEec
Confidence 334666777777666665444 344556777777 9999999999999999999986544 445789999999
Q ss_pred hhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhhh
Q psy15589 87 KLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVLV 140 (155)
Q Consensus 87 e~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~~ 140 (155)
|.+++.+.+++++++|.++ |.++.|++++|.+++..+|.+...+.+. ..++..
T Consensus 144 e~~~~~~~~~~~~v~a~~~-~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~ 197 (202)
T 3bpz_A 144 EICLLTRGRRTASVRADTY-CRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDR 197 (202)
T ss_dssp HHHHHHCSBCSSEEEESSC-EEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHH
T ss_pred cHHHhcCCCcccEEEEeeE-EEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999995 9999999999999999999999988877 444433
No 7
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.78 E-value=6.2e-19 Score=129.12 Aligned_cols=122 Identities=12% Similarity=0.153 Sum_probs=107.0
Q ss_pred chhhhHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEE
Q psy15589 3 RAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTS 78 (155)
Q Consensus 3 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~ 78 (155)
|.-..+..++|..+|+...+.+... ...+.+.+|+.+ +.+|++++++|+|.+|.++++..+.+ .+..
T Consensus 8 c~~~~~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~ 78 (232)
T 2gau_A 8 KGLGHLLRDVWSLLNEEERELLDKE--IQPFPCKKASTV-------FSEGDIPNNLFYLYEGKIKILREGVYGRFHISRI 78 (232)
T ss_dssp --CGGGSHHHHTTCCHHHHHHHHHH--CEEEEECTTCEE-------ECTTCCCCEEEEEEESCEEEEC-----CCCEEEE
T ss_pred CcccccccHhhhcCCHHHHHHHHhh--CeEEEECCCCEE-------EeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEE
Confidence 6667778999999999999997665 566789999999 99999999999999999999975432 7899
Q ss_pred ccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 79 LYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 79 l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
+++|++||+.+++.+.++.+++.|.++ |.++.+|+++|.+++.++|.+...+.+.
T Consensus 79 ~~~G~~~G~~~~~~~~~~~~~~~A~~~-~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 133 (232)
T 2gau_A 79 VKPGQFFGMRPYFAEETCSSTAIAVEN-SKVLAIPVEAIEALLKGNTSFCRYFLKA 133 (232)
T ss_dssp ECTTCEESHHHHHHTSCCSSEEEESSC-EEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred eCCCCEeeeehhhCCCCcceEEEEecc-eEEEEEEHHHHHHHHHHCHHHHHHHHHH
Confidence 999999999999999999999999995 9999999999999999999999877766
No 8
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.78 E-value=5.1e-19 Score=128.35 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=105.0
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeee
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 86 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fG 86 (155)
+...++|.++++.....+... .....+.+|+.+ +.+|+.++.+|+|.+|.|+++..+ ..+..+++|++||
T Consensus 77 l~~~~~f~~l~~~~l~~l~~~--~~~~~~~~ge~I-------~~~G~~~~~ly~I~~G~v~v~~~~-~~~~~l~~G~~fG 146 (212)
T 3ukn_A 77 LLQLPLFESASRGCLRSLSLI--IKTSFCAPGEFL-------IRQGDALQAIYFVCSGSMEVLKDN-TVLAILGKGDLIG 146 (212)
T ss_dssp GGGSGGGTTCCHHHHHHHHHH--CEEEEECTTCEE-------ECTTSBCCEEEEEEECCEEEESSS-CEEEEECTTCEEE
T ss_pred HHhcHHhhcCCHHHHHHHHHH--hheEEeCCCCEE-------EECCCcccEEEEEEecEEEEEECC-eEEEEecCCCCcC
Confidence 346788888888888876554 455668888888 999999999999999999999854 3899999999999
Q ss_pred hhhhhcCC--CceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHhchhh
Q psy15589 87 KLALVNNA--PRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKDV 138 (155)
Q Consensus 87 e~~ll~~~--~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~~~~~ 138 (155)
|.+++.+. +++++++|.++ |.++.|++++|.+++..+|.+...+.+.+.+.
T Consensus 147 e~~~~~~~~~~~~~~v~a~~~-~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~ 199 (212)
T 3ukn_A 147 SDSLTKEQVIKTNANVKALTY-CDLQYISLKGLREVLRLYPEYAQKFVSEIQHD 199 (212)
T ss_dssp CSCCSSSSCCBBCSEEEESSC-EEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cHHhccCCCCCcceEEEEccc-EEEEEEeHHHHHHHHHHChHHHHHHHHHHHHh
Confidence 99999998 99999999995 99999999999999999999999888774433
No 9
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.78 E-value=5.4e-19 Score=121.35 Aligned_cols=124 Identities=15% Similarity=0.230 Sum_probs=108.6
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCC
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAG 82 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G 82 (155)
+-+.++|..+|+...+.+... ...+.+.+|+.+ +.+|++++++|+|++|.++++..+.+ .+..+++|
T Consensus 14 l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G 84 (154)
T 2z69_A 14 LQSHHLFEPLSPVQLQELLAS--SDLVNLDKGAYV-------FRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNER 84 (154)
T ss_dssp HTTSTTTTTSCHHHHHHHHHT--CEEEEECTTCEE-------ECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTT
T ss_pred hhcChhhcCCCHHHHHHHHhh--CcEEEecCCCEE-------ecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCC
Confidence 346788999999999987666 677789999999 99999999999999999999976443 68899999
Q ss_pred CeeehhhhhcCCC-ceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhhh
Q psy15589 83 EDFGKLALVNNAP-RAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVLV 140 (155)
Q Consensus 83 ~~fGe~~ll~~~~-~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~~ 140 (155)
++||+.+++.+.+ +.+++.|.++ |.++.|++++|.+++.++|.+...+.+. ..++..
T Consensus 85 ~~~G~~~~~~~~~~~~~~~~a~~~-~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~~ 143 (154)
T 2z69_A 85 NTFAEAMMFMDTPNYVATAQAVVP-SQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQ 143 (154)
T ss_dssp EEESGGGGGSSCSBCSSEEEESSS-EEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred CeeccHhhccCCCCCceEEEEccc-eEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 9999999999998 9999999995 9999999999999999999999888877 444433
No 10
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.78 E-value=2.2e-19 Score=124.88 Aligned_cols=116 Identities=27% Similarity=0.463 Sum_probs=101.8
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe---eEEEccCCC
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGE 83 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~---~~~~l~~G~ 83 (155)
+-..++|..+++...+.+... ...+.+.+|+.+ +.+|+.++++|+|++|.++++....+ .+..+++|+
T Consensus 40 l~~~~~f~~l~~~~l~~l~~~--~~~~~~~~g~~i-------~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G~ 110 (161)
T 3idb_B 40 CKDILLFKNLDPEQMSQVLDA--MFEKLVKEGEHV-------IDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRG 110 (161)
T ss_dssp HTTCHHHHTSCHHHHHHHHHH--CEEEEECTTCEE-------ECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESCC
T ss_pred HhCCHhhhcCCHHHHHHHHHh--cceeEeCCCCEE-------EeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCCC
Confidence 345789999999999886665 556778999999 99999999999999999999984332 788999999
Q ss_pred eeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHH
Q psy15589 84 DFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLK 132 (155)
Q Consensus 84 ~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~ 132 (155)
+||+.+++.+.++.+++.|.++ |.++.|++++|.+++.++|.+.+.+.
T Consensus 111 ~fGe~~~~~~~~~~~~v~A~~~-~~~~~i~~~~~~~l~~~~p~~~~~~~ 158 (161)
T 3idb_B 111 SFGELALMYNTPRAATITATSP-GALWGLDRVTFRRIIVKNNAKKRKMY 158 (161)
T ss_dssp EECGGGGTCCCCCSSEEEESSS-EEEEEEEHHHHHHHHHHHHHTSCCC-
T ss_pred EechHHHHcCCCcccEEEECCC-eEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 9999999999999999999995 99999999999999999999876544
No 11
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.78 E-value=1.5e-18 Score=126.96 Aligned_cols=127 Identities=19% Similarity=0.234 Sum_probs=111.6
Q ss_pred chhhhHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEE
Q psy15589 3 RAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTS 78 (155)
Q Consensus 3 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~ 78 (155)
+...+-..++|..+|+...+.+... ...+.+.+|+.+ +.+|++++++|+|++|.++++..+.+ .+..
T Consensus 4 ~~~~L~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~ 74 (231)
T 3e97_A 4 RLDDLKRSPLFQNVPEDAMREALKV--VTERNFQPDELV-------VEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGD 74 (231)
T ss_dssp CHHHHHTSGGGTTCCHHHHHHHHHT--EEEEEECTTCBC-------CCTTCTTTCEEEECSSEEEEEEECC--CEEEEEE
T ss_pred HHHHHhcChhhccCCHHHHHHHHHh--cEEEEECCCCEE-------EeCCCCCCeEEEEEecEEEEEEECCCCceEEEEe
Confidence 4455667899999999999997776 667789999999 99999999999999999999987643 6899
Q ss_pred ccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhh
Q psy15589 79 LYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVL 139 (155)
Q Consensus 79 l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~ 139 (155)
+++|++||+.+++.+.++.+++.|.++ |.++.++++.|.+++.++|.+...+.+. .++..
T Consensus 75 ~~~g~~~G~~~~~~~~~~~~~~~a~~~-~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~ 135 (231)
T 3e97_A 75 IYAPGVVGETAVLAHQERSASVRALTP-VRTLMLHREHFELILRRHPRVLWNLAEMLARRVT 135 (231)
T ss_dssp EESSEEESTTTTTCCCCCCEEEEESSC-EEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEeeHHHhCCCCceEEEEECCc-EEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999995 9999999999999999999999877766 44433
No 12
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.77 E-value=1.4e-18 Score=125.66 Aligned_cols=116 Identities=25% Similarity=0.382 Sum_probs=105.4
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCe
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGED 84 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~ 84 (155)
+.++|..+|+...+.+... ...+.+.+|+.+ +.+|++++++|+|.+|.++++..+.+ .+..+++|++
T Consensus 3 ~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~ 73 (216)
T 4ev0_A 3 GSPLFHGLAPEEVDLALSY--FQRRLYPQGKPI-------FYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGEL 73 (216)
T ss_dssp -CGGGTTCCHHHHHHHHTT--CEEEEECTTCEE-------ECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCE
T ss_pred CChhhcCCCHHHHHHHHHh--heEEEeCCCCEE-------EeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCE
Confidence 4689999999999997776 567889999999 99999999999999999999987443 7899999999
Q ss_pred eehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 85 FGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 85 fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
||+.+++.+.++++++.|.++ |.++.+++++|.+++.++|.+...+.+.
T Consensus 74 ~G~~~~~~~~~~~~~~~a~~~-~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 122 (216)
T 4ev0_A 74 FGEMSLLDEGERSASAVAVED-TELLALFREDYLALIRRLPLVAHNLAAL 122 (216)
T ss_dssp ECHHHHHHCCBCSSEEEESSS-EEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred EeehhhcCCCCcceEEEEcCC-EEEEEEcHHHHHHHHHHCcHHHHHHHHH
Confidence 999999999999999999995 9999999999999999999999877766
No 13
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.77 E-value=3.4e-19 Score=120.97 Aligned_cols=115 Identities=21% Similarity=0.269 Sum_probs=96.5
Q ss_pred hhHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 6 WVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 6 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
.+-+.++|..+++...+.+... ...+.+.+|+.+ +.+|+.++++|+|++|.++++..+ ..+..+++|++|
T Consensus 24 ~l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~g~~~~~~y~i~~G~v~~~~~g-~~~~~~~~G~~f 93 (139)
T 3ocp_A 24 AILDNDFMKNLELSQIQEIVDC--MYPVEYGKDSCI-------IKEGDVGSLVYVMEDGKVEVTKEG-VKLCTMGPGKVF 93 (139)
T ss_dssp HHHHCTTTTTSCHHHHHHHHHH--CEEEEECSSCEE-------ECTTSCCCEEEEEEECCEEEEETT-EEEEEECTTCEE
T ss_pred HHhcCHhhhcCCHHHHHHHHHh--cEEEecCCCCEE-------EeCCCcCCEEEEEEeCEEEEEECC-EEEEEeCCCCEe
Confidence 3456789999999999987665 566779999999 999999999999999999997744 388999999999
Q ss_pred ehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHH
Q psy15589 86 GKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRL 131 (155)
Q Consensus 86 Ge~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l 131 (155)
|+.+++.+.++.++++|.++ |.++.|++++|.++++++|.+.++.
T Consensus 94 Ge~~~l~~~~~~~~~~a~~~-~~v~~i~~~~~~~l~~~~p~~~r~~ 138 (139)
T 3ocp_A 94 GELAILYNCTRTATVKTLVN-VKLWAIDRQCFQTIMMRTGLIKHTE 138 (139)
T ss_dssp SCHHHHHCCCCSSEEEESSC-EEEEEEEHHHHHHHHTC--------
T ss_pred ccHHHHCCCCcceEEEECcc-eEEEEEcHHHHHHHHhhChHhhhhc
Confidence 99999999999999999995 9999999999999999999987653
No 14
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.77 E-value=5.4e-19 Score=119.50 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=104.4
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeee
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 86 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fG 86 (155)
+-+.++|..+|+...+.+... ...+.+.+|+.+ +.+|+.++++|+|++|.++++..+ ...+++|++||
T Consensus 13 l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~g~~~~~~y~i~~G~v~~~~~~---~~~~~~G~~~G 80 (138)
T 1vp6_A 13 VAAVPLFQKLGPAVLVEIVRA--LRARTVPAGAVI-------CRIGEPGDRMFFVVEGSVSVATPN---PVELGPGAFFG 80 (138)
T ss_dssp HTTCGGGGGCCHHHHHHHHHH--CEEEEECTTCEE-------ECTTSCCCEEEEEEESCEEECSSS---CEEECTTCEEC
T ss_pred HHhChhhhcCCHHHHHHHHHh--hcEEEeCCCCEE-------EeCCCCcceEEEEEeeEEEEEeCC---cceECCCCEee
Confidence 346789999999999987655 466789999999 999999999999999999998766 35789999999
Q ss_pred hhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHhch
Q psy15589 87 KLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGK 136 (155)
Q Consensus 87 e~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~~~ 136 (155)
+.+++.+.++..++.|.++ |.++.+++++|.+++.++|.+...+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~a~~~-~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~ 129 (138)
T 1vp6_A 81 EMALISGEPRSATVSAATT-VSLLSLHSADFQMLCSSSPEIAEIFRKTAL 129 (138)
T ss_dssp HHHHHHCCCCSSCEEESSS-EEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ehHhccCCCceeEEEECCC-EEEEEECHHHHHHHHHHCHHHHHHHHHHHH
Confidence 9999999999999999995 999999999999999999999988887733
No 15
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.76 E-value=7.6e-19 Score=121.39 Aligned_cols=114 Identities=27% Similarity=0.501 Sum_probs=100.1
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeee
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 86 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fG 86 (155)
+-..++|..+++...+.+... .....+.+|+.+ +.+|+.++++|+|++|.++++..+ ..+..+++|++||
T Consensus 40 l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~G~~~~~~y~i~~G~v~~~~~~-~~~~~~~~G~~fG 109 (154)
T 3pna_A 40 IEKNVLFSHLDDNERSDIFDA--MFPVSFIAGETV-------IQQGDEGDNFYVIDQGEMDVYVNN-EWATSVGEGGSFG 109 (154)
T ss_dssp HHHCGGGTTCCHHHHHHHHHH--CEEEEECTTCEE-------ECTTSCCCEEEEEEESCEEEEETT-EEEEEECTTCEEC
T ss_pred HHhChhhhhCCHHHHHHHHHh--ceEEEECCCCEE-------EeCCCCCCeEEEEEecEEEEEECC-EEEEEecCCCEee
Confidence 446789999999999886655 556778999999 999999999999999999999843 3888999999999
Q ss_pred hhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHH
Q psy15589 87 KLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRL 131 (155)
Q Consensus 87 e~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l 131 (155)
+.+++.+.++.+++.|.++ |.++.|++++|.+++.++|...+.+
T Consensus 110 e~~~~~~~~~~~~v~A~~~-~~~~~i~~~~~~~ll~~~~~~~~~~ 153 (154)
T 3pna_A 110 ELALIYGTPRAATVKAKTN-VKLWGIDRDSYRRILMGSTLRKRKM 153 (154)
T ss_dssp CHHHHHCCCCSSEEEESSC-EEEEEEEHHHHHHHTHHHHHHC---
T ss_pred ehHhhcCCCcceEEEECcc-eEEEEEeHHHHHHHHHhChHHHhhc
Confidence 9999999999999999995 9999999999999999999887654
No 16
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.76 E-value=2.4e-18 Score=122.80 Aligned_cols=117 Identities=9% Similarity=0.093 Sum_probs=105.2
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCe
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGED 84 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~ 84 (155)
..+.|..+|+...+.+... ...+.+.+|+.+ +.+|++++++|+|.+|.++++..+.+ .+..++||++
T Consensus 11 ~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~l-------~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~ 81 (194)
T 3dn7_A 11 HIRKFIFLTDEDAGTLSAF--FQLKKVRKKETL-------LKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWW 81 (194)
T ss_dssp HHHTTSCCCHHHHHHHHTT--CEEEEECTTCEE-------ECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCE
T ss_pred HHHHhCCCCHHHHHHHHHh--CEEEEEcCCCEE-------ECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcE
Confidence 5678999999999997777 567889999999 99999999999999999999986543 7889999999
Q ss_pred eehh-hhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHhc
Q psy15589 85 FGKL-ALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHG 135 (155)
Q Consensus 85 fGe~-~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~~ 135 (155)
|||. +++.+.++.+++.|.+| |.++.+|+++|.+++.++|.+...+.+.+
T Consensus 82 ~ge~~~~~~~~~~~~~~~a~~~-~~v~~i~~~~~~~l~~~~p~~~~~~~~~~ 132 (194)
T 3dn7_A 82 LSDYMAFQKQQPADFYIQSVEN-CELLSITYTEQENLFERIPALERYFRLVY 132 (194)
T ss_dssp ECCHHHHHHTCBCSSEEEESSC-EEEEEEEHHHHHHHHHHCTTHHHHHHHHH
T ss_pred EeehHHHhcCCCCceEEEEECC-EEEEEEeHHHHHHHHHhCHHHHHHHHHHH
Confidence 9987 78899999999999995 99999999999999999999998777663
No 17
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.76 E-value=3.3e-18 Score=125.58 Aligned_cols=126 Identities=19% Similarity=0.289 Sum_probs=110.6
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCC
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAG 82 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G 82 (155)
+-+.++|..+|+...+.+... ...+.+.+|+.+ +.+|++++++|+|++|.|+++..+.+ .+..+++|
T Consensus 13 l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G 83 (237)
T 3fx3_A 13 ARNSLLIRSLPEQHVDALLSQ--AVWRSYDRGETL-------FLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRG 83 (237)
T ss_dssp HTTSHHHHTSCHHHHHHHHTT--CEEEEECTTCEE-------ECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETT
T ss_pred HhCCHhhccCCHHHHHHHHhh--CEEEEECCCCEE-------EcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCC
Confidence 346789999999999997777 677889999999 99999999999999999999986543 78999999
Q ss_pred CeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhhhhh
Q psy15589 83 EDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVLVLE 142 (155)
Q Consensus 83 ~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~~~~ 142 (155)
++||+.+++.+.++.+++.|.++ |.++.+++++|.+++.++|.+...+.+. ..+...+.
T Consensus 84 ~~~G~~~~~~~~~~~~~~~a~~~-~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~ 143 (237)
T 3fx3_A 84 ESFGEAVALRNTPYPVSAEAVTP-CEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLV 143 (237)
T ss_dssp EEECHHHHHHTCCCSSEEEESSS-EEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CEechHHHhcCCCCCceEEECCc-eEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999995 9999999999999999999999877666 44444433
No 18
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.75 E-value=1.8e-18 Score=126.24 Aligned_cols=119 Identities=19% Similarity=0.297 Sum_probs=106.9
Q ss_pred hhHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccC
Q psy15589 6 WVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYA 81 (155)
Q Consensus 6 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~ 81 (155)
.+-..++|..+|+...+.+... ...+.+.+|+.+ +.+|++++++|+|++|.++++..+.+ .+..+++
T Consensus 7 ~l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~ 77 (227)
T 3d0s_A 7 ILARAGIFQGVEPSAIAALTKQ--LQPVDFPRGHTV-------FAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGP 77 (227)
T ss_dssp HHTTSSTTSSCCSSTTHHHHTT--SCEEEECTTCEE-------ECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECT
T ss_pred HHhcChhhcCCCHHHHHHHHhh--CeEEEeCCCCEE-------EcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecC
Confidence 3446789999999999987666 567789999999 99999999999999999999987543 6899999
Q ss_pred CCeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 82 GEDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 82 G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
|++||+.+++.+.++.+++.|.++ |.++.+|+++|.+++.++|.+...+.+.
T Consensus 78 G~~~G~~~~~~~~~~~~~~~A~~~-~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 129 (227)
T 3d0s_A 78 SDMFGELSIFDPGPRTSSATTITE-VRAVSMDRDALRSWIADRPEISEQLLRV 129 (227)
T ss_dssp TCEESCHHHHSCSCCSSEEEESSC-EEEEEEEHHHHHHTTSSCHHHHHHHHHH
T ss_pred CCEEeeHHHcCCCCceeEEEEccc-EEEEEEeHHHHHHHHHHChHHHHHHHHH
Confidence 999999999999999999999995 9999999999999999999999877766
No 19
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.74 E-value=1.2e-17 Score=121.13 Aligned_cols=116 Identities=13% Similarity=0.172 Sum_probs=105.9
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCe
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGED 84 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~ 84 (155)
+.++|..+|+...+.+... ...+.+.+|+.+ +.+|++++++|+|.+|.++++..+.+ .+..++||++
T Consensus 7 ~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~ 77 (220)
T 3dv8_A 7 YFPLWNDLNTAQKKLISDN--LITQHVKKGTII-------HNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDM 77 (220)
T ss_dssp SCGGGGTSCHHHHHHHHTT--CEEEEECTTCEE-------EEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCE
T ss_pred hChhhhcCCHHHHHHHHhh--CceEEeCCCCEE-------ECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCe
Confidence 5689999999999997777 567889999999 99999999999999999999986543 6889999999
Q ss_pred --eehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 85 --FGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 85 --fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
||+.+++.+.++.+++.|.++ |.++.+|+++|.+++.++|.+...+.+.
T Consensus 78 ~~~g~~~~~~~~~~~~~~~a~~~-~~~~~i~~~~~~~l~~~~p~~~~~~~~~ 128 (220)
T 3dv8_A 78 CLLSASCIMRSIQFEVTIEAEKD-TDLWIIPAEIYKGIMKDSAPVANYTNEL 128 (220)
T ss_dssp ESGGGGGGCTTCCCCCEEEESSC-EEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred eehhHHHHhCCCCCceEEEEeee-eEEEEEEHHHHHHHHHHCHHHHHHHHHH
Confidence 799999999999999999995 9999999999999999999999888766
No 20
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.74 E-value=1.2e-17 Score=122.62 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=110.2
Q ss_pred hhhhHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEc
Q psy15589 4 AGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSL 79 (155)
Q Consensus 4 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l 79 (155)
...+-+.++|..+++...+.+........+.+.+|+.+ +.+|++++++|+|++|.++++..+.+ .+..+
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i-------~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~ 89 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETI-------IKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQI 89 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEE-------ECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEE
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEE-------ECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEc
Confidence 34456789999999999998643200245678999999 99999999999999999999976543 78899
Q ss_pred cCCCeeehhhhhcCCC-ceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhhhhhh
Q psy15589 80 YAGEDFGKLALVNNAP-RAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVLVLER 143 (155)
Q Consensus 80 ~~G~~fGe~~ll~~~~-~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~~~~~ 143 (155)
++|++||+.+++.+.+ +.++++|.++ |.++.+++++|.+++.++|.+...+.+. ..+.....+
T Consensus 90 ~~G~~fG~~~~~~~~~~~~~~~~A~~~-~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~ 154 (232)
T 1zyb_A 90 EAPYLIEPQSLFGMNTNYASSYVAHTE-VHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYS 154 (232)
T ss_dssp ESSEEECGGGGSSSCCBCSSEEEESSC-EEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCeeeehHHhCCCCCCceEEEEccc-eEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 9999999995 9999999999999999999999888777 444444443
No 21
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.74 E-value=1.4e-17 Score=121.49 Aligned_cols=116 Identities=16% Similarity=0.287 Sum_probs=98.8
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCe
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGED 84 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~ 84 (155)
..++|..+|+...+.+... ...+.+.+|+.+ +.+|++++++|+|++|.++++..+.+ .+..+++|++
T Consensus 15 ~~~lf~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~ 85 (230)
T 3iwz_A 15 NATPSLTLDAGTIERFLAH--SHRRRYPTRTDV-------FRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEF 85 (230)
T ss_dssp -------CCHHHHHHHHTT--SEEEEECTTCEE-------ECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCE
T ss_pred hcchhccCCHHHHHHHHHh--CeEEEeCCCCEE-------ECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCE
Confidence 5689999999999997777 677889999999 99999999999999999999986543 7899999999
Q ss_pred eehhhhhcCC-CceeEEEEecCcEEEEEEcHHHHHHHHHhh-----HHHHHHHHHh
Q psy15589 85 FGKLALVNNA-PRAATIVTREDNCHFLRVDKDDFIRIMRDV-----EANTVRLKEH 134 (155)
Q Consensus 85 fGe~~ll~~~-~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~-----~~~~~~l~~~ 134 (155)
||+.+++.+. ++.+++.|.++ |.++.+|+++|.+++.++ |.+...+.+.
T Consensus 86 ~G~~~~~~~~~~~~~~~~a~~~-~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~ 140 (230)
T 3iwz_A 86 VGEMGLFIESDTREVILRTRTQ-CELAEISYERLQQLFQTSLSPDAPRILYAIGVQ 140 (230)
T ss_dssp ESCGGGTSCCSBCCSEEEESSC-EEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHH
T ss_pred EEehhhhcCCCCceeEEEEcCc-EEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 9999999885 79999999995 999999999999999999 9998877766
No 22
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.72 E-value=6.9e-18 Score=135.34 Aligned_cols=127 Identities=64% Similarity=0.998 Sum_probs=97.0
Q ss_pred HHHhhhhhhhHHHHHHHhhcCHHHH-HHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeee
Q psy15589 8 LRTLLLNDESGTLRDRKTSGGRTIA-RRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 86 (155)
Q Consensus 8 ~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fG 86 (155)
-..++|..+++..+..+... ... +.+.+|+.+ +.+|+.++++|+|++|.++++..+.+.+..+++|++||
T Consensus 340 ~~~~~f~~l~~~~~~~l~~~--~~~~~~~~~g~~i-------~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~l~~G~~fG 410 (469)
T 1o7f_A 340 LHIKALSHLSTTVKRELAGV--LIFESHAKGGTVL-------FNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFG 410 (469)
T ss_dssp TTCGGGTTSCHHHHHHHHHH--CEEEEECSTTCEE-------ECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCEEC
T ss_pred hcCHhhhhCCHHHHHHHHHH--hheeeEecCCCEE-------EeCCCcCCeEEEEEEeEEEEEEcCCeeEEEecCCCEEE
Confidence 35677888888888876444 222 367888888 99999999999999999999987666899999999999
Q ss_pred hhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHhchhhhhhhh
Q psy15589 87 KLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLER 143 (155)
Q Consensus 87 e~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~~~~~~~~~~ 143 (155)
|.+++.+.++.++++|.+++|.++.|++++|.+++.++|.+...+.+.+++++++++
T Consensus 411 e~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~~~~v~~~e~ 467 (469)
T 1o7f_A 411 KLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEHDQDVLVLEK 467 (469)
T ss_dssp GGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC----------------
T ss_pred EehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhcCceEEEEec
Confidence 999999999999999998239999999999999999999999999999999999886
No 23
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.72 E-value=2.9e-17 Score=118.26 Aligned_cols=113 Identities=23% Similarity=0.371 Sum_probs=98.3
Q ss_pred hhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCeeeh
Q psy15589 12 LLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGK 87 (155)
Q Consensus 12 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe 87 (155)
+.+.+|++..+.+... ...+.+.+|+.+ +.+|++++++|+|.+|.++++..+.+ .+..+++|++||+
T Consensus 3 l~~~l~~~~l~~l~~~--~~~~~~~~g~~i-------~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~ 73 (210)
T 3ryp_A 3 LGKPQTDPTLEWFLSH--CHIHKYPSKSTL-------IHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 73 (210)
T ss_dssp ----CCCHHHHHHHTT--SEEEEECTTCEE-------ECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESC
T ss_pred CCCcCCHHHHHHHHHh--cEEEEeCCCCEE-------ECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeee
Confidence 5566888888887666 667789999999 99999999999999999999987543 7889999999999
Q ss_pred hhhhcCC-CceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 88 LALVNNA-PRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 88 ~~ll~~~-~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
.+++.+. ++.+++.|.++ |.++.+|++.|.+++.++|.+...+.+.
T Consensus 74 ~~~~~~~~~~~~~~~a~~~-~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 120 (210)
T 3ryp_A 74 LGLFEEGQERSAWVRAKTA-CEVAEISYKKFRQLIQVNPDILMRLSAQ 120 (210)
T ss_dssp TTTTSTTCBCSSEEEESSC-EEEEEEEHHHHHHHHHHCTHHHHHHHHH
T ss_pred HHHhcCCCCceEEEEECCc-EEEEEEcHHHHHHHHHHChHHHHHHHHH
Confidence 9999988 89999999995 9999999999999999999998877655
No 24
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.71 E-value=1e-17 Score=127.12 Aligned_cols=125 Identities=18% Similarity=0.298 Sum_probs=108.0
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEec-Ce----eEEEccCCC
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYG-KG----CVTSLYAGE 83 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~-~~----~~~~l~~G~ 83 (155)
..++|..+++..+..+... ...+.+.+|+.+ +.+|+.++.+|+|.+|.++++... .+ .+..+++|+
T Consensus 161 ~~~~f~~l~~~~l~~l~~~--~~~~~~~~g~~I-------~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~ 231 (299)
T 3shr_A 161 SVPTFQSLPEEILSKLADV--LEETHYENGEYI-------IRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGD 231 (299)
T ss_dssp TSHHHHHSCHHHHHHHTTT--CEEEEECTTCEE-------ECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTC
T ss_pred hCHHhhhCCHHHHHHHHHh--ccEEEECCCCEE-------EeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCC
Confidence 4578888888888887666 566778888888 999999999999999999999876 22 789999999
Q ss_pred eeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhhhhhh
Q psy15589 84 DFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVLVLER 143 (155)
Q Consensus 84 ~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~~~~~ 143 (155)
+|||.+++.+.++.++++|.++ |.++.|++++|.+++..+|.+...+.+. ..+...++.
T Consensus 232 ~fGe~~ll~~~~~~~tv~a~~~-~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~~~ 291 (299)
T 3shr_A 232 WFGEKALQGEDVRTANVIAAEA-VTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYEAE 291 (299)
T ss_dssp EECGGGGSSSEECSSEEEESSS-EEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred EeChHHHhCCCCcceEEEECCC-EEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcchh
Confidence 9999999999999999999995 9999999999999999999999888887 444444443
No 25
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.71 E-value=4.6e-18 Score=123.87 Aligned_cols=120 Identities=15% Similarity=0.236 Sum_probs=107.4
Q ss_pred hhhHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEcc
Q psy15589 5 GWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLY 80 (155)
Q Consensus 5 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~ 80 (155)
..+-..++|..+|+...+.+... ...+.+.+|+.+ +.+|++++++|+|.+|.++++..+.+ .+..++
T Consensus 9 ~~l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~ 79 (227)
T 3dkw_A 9 QLLQSHHLFEPLSPVQLQELLAS--SDLVNLDKGAYV-------FRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTN 79 (227)
T ss_dssp HHHTTSTTTSSSCHHHHHHHHTS--CEEEECCTTEEE-------ECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEEC
T ss_pred HHHhcChhhcCCCHHHHHHHHhh--CEEEEECCCCEE-------EcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcC
Confidence 34557899999999999997776 677889999999 99999999999999999999986543 788899
Q ss_pred CCCeeehhhhhcCCC-ceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 81 AGEDFGKLALVNNAP-RAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 81 ~G~~fGe~~ll~~~~-~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
+|++||+.+++.+.+ +.+++.|.++ |.++.+|+++|.+++.++|.+...+.+.
T Consensus 80 ~g~~~G~~~~~~~~~~~~~~~~a~~~-~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 133 (227)
T 3dkw_A 80 ERNTFAEAMMFMDTPNYVATAQAVVP-SQLFRFSNKAYLRQLQDNTPLALALLAK 133 (227)
T ss_dssp TTEEESCTTTTTTCSBCSSCEEESSC-CEEEEEESHHHHHHHSSCTHHHHHHHHH
T ss_pred CCCEeeeHHhcCCCCCCceEEEEcCc-EEEEEEeHHHHHHHHHHCHHHHHHHHHH
Confidence 999999999999999 9999999995 9999999999999999999999877665
No 26
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.71 E-value=3.5e-17 Score=123.48 Aligned_cols=125 Identities=28% Similarity=0.484 Sum_probs=107.4
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeee
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 86 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fG 86 (155)
+-..++|..+++...+.+... ...+.+.+|+.+ +.+|+.++.+|+|++|.++++..+ ..+..+++|++||
T Consensus 41 l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~G~~~~~~y~i~~G~v~~~~~g-~~~~~l~~G~~fG 110 (291)
T 2qcs_B 41 IEKNVLFSHLDDNERSDIFDA--MFPVSFIAGETV-------IQQGDEGDNFYVIDQGEMDVYVNN-EWATSVGEGGSFG 110 (291)
T ss_dssp TTTCHHHHTSCHHHHHHHHHH--CEEEEECTTCEE-------ECTTSBCCEEEEEEECCEEEEETT-EEEEEECTTCEEC
T ss_pred HhcChhhhhCCHHHHHHHHHh--ccEEEECCCCEE-------EeCCCCCceEEEEeeeEEEEEECC-eEEEEcCCCCccc
Confidence 346789999999998886655 456778999999 999999999999999999999843 4899999999999
Q ss_pred hhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhhhhh
Q psy15589 87 KLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVLVLE 142 (155)
Q Consensus 87 e~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~~~~ 142 (155)
|.+++.+.++.++++|.++ |.++.|++++|.+++..+|.....+... ++++..+.
T Consensus 111 e~~l~~~~~~~~tv~a~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~ 166 (291)
T 2qcs_B 111 ELALIYGTPRAATVKAKTN-VKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILE 166 (291)
T ss_dssp GGGGTCCCBCSSEEEESSC-EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCGGGT
T ss_pred hHHHhcCCCCceEEEECCC-EEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhchHhh
Confidence 9999999999999999995 9999999999999999999988766554 55444443
No 27
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.4e-17 Score=121.11 Aligned_cols=112 Identities=24% Similarity=0.413 Sum_probs=101.0
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehh
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKL 88 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~ 88 (155)
+.++|..+++..+..+... ...+.+.+|+.+ +.+|++++.+|+|.+|.++++....+.+..+++|++|||.
T Consensus 129 ~~~~f~~l~~~~l~~l~~~--~~~~~~~~g~~i-------~~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~ 199 (246)
T 3of1_A 129 SMPVLKSLTTYDRAKLADA--LDTKIYQPGETI-------IREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEV 199 (246)
T ss_dssp HCGGGTTCCHHHHHHHHHT--CEEEEECTTCEE-------ECTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHH
T ss_pred hChhhhcCCHHHHHHHHHh--hheEEeCCCCEE-------EeCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHH
Confidence 5578889998888886666 556778888888 9999999999999999999999887788999999999999
Q ss_pred hhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHH
Q psy15589 89 ALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVR 130 (155)
Q Consensus 89 ~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~ 130 (155)
+++.+.++.++++|.++ |.++.|++++|.+++..+|.+..+
T Consensus 200 ~~~~~~~~~~~v~a~~~-~~~~~i~~~~f~~ll~~~~~~~~~ 240 (246)
T 3of1_A 200 ALLNDLPRQATVTATKR-TKVATLGKSGFQRLLGPAVDVLKL 240 (246)
T ss_dssp HHHHTCBCSSEEEESSC-EEEEEEEHHHHHHHCTTHHHHHHH
T ss_pred HHhCCCCcccEEEECCC-EEEEEEeHHHHHHHhccHHHHHhc
Confidence 99999999999999995 999999999999999999987654
No 28
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.71 E-value=6.1e-17 Score=116.33 Aligned_cols=109 Identities=21% Similarity=0.336 Sum_probs=92.9
Q ss_pred hhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCeeehhhhh
Q psy15589 16 ESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALV 91 (155)
Q Consensus 16 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe~~ll 91 (155)
+|++..+.+... ...+.+.+|+.+ +.+|++++++|+|.+|.++++..+.+ .+..+++|++||+.+++
T Consensus 1 l~~~~l~~l~~~--~~~~~~~~g~~i-------~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~ 71 (207)
T 2oz6_A 1 MKLKHLDKLLAH--CHRRRYTAKSTI-------IYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLF 71 (207)
T ss_dssp CCHHHHHHHHHS--SEEEEECTTCEE-------ECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTC
T ss_pred CCHHHHHHHHhh--cceEEECCCCEE-------EcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHh
Confidence 355566665555 456778999999 99999999999999999999986543 78999999999999999
Q ss_pred cCC----CceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 92 NNA----PRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 92 ~~~----~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
.+. ++.+++.|.++ |.++.+|+++|.+++.++|.+...+.+.
T Consensus 72 ~~~~~~~~~~~~~~A~~~-~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 117 (207)
T 2oz6_A 72 EKEGSEQERSAWVRAKVE-CEVAEISYAKFRELSQQDSEILYTLGSQ 117 (207)
T ss_dssp C-----CBCCSEEEESSC-EEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred cCCCCCCCcceEEEECCc-EEEEEECHHHHHHHHHHCHHHHHHHHHH
Confidence 998 89999999995 9999999999999999999998876665
No 29
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.71 E-value=2.1e-17 Score=127.18 Aligned_cols=120 Identities=21% Similarity=0.288 Sum_probs=107.2
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe---eEEEccCCC
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGE 83 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~---~~~~l~~G~ 83 (155)
+-..++|..++++.++.+... ...+.+.+|+.+ +.+|++++++|+|++|.++++..+.+ .+..+++|+
T Consensus 15 l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~ 85 (333)
T 4ava_A 15 LAGMDVFQGCPAEGLVSLAAS--VQPLRAAAGQVL-------LRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGM 85 (333)
T ss_dssp HTTSGGGTTCCHHHHHHHHHH--CEEEEECTTCEE-------ECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTC
T ss_pred HhCCHhHhcCCHHHHHHHHhh--CeEEEECCCCEE-------EeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCC
Confidence 346799999999999987666 566778999999 99999999999999999999987654 788999999
Q ss_pred eeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHhchh
Q psy15589 84 DFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKD 137 (155)
Q Consensus 84 ~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~~~~ 137 (155)
+|||.+++.+.+++++++|.++ |.++.|++++|.+++ ++|.+...+.+.+.+
T Consensus 86 ~fGe~~l~~~~~~~~~v~A~~~-~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~ 137 (333)
T 4ava_A 86 IVGEIALLRDSPRSATVTTIEP-LTGWTGGRGAFATMV-HIPGVGERLLRTARQ 137 (333)
T ss_dssp EESHHHHHHTCBCSSEEEESSC-EEEEEECHHHHHHHH-HSTTHHHHHHHHHHH
T ss_pred EeeHHHhcCCCCceEEEEEecC-EEEEEEcHHHHHHHH-hChHHHHHHHHHHHH
Confidence 9999999999999999999995 999999999999999 999999888777443
No 30
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.70 E-value=5.7e-18 Score=124.49 Aligned_cols=123 Identities=27% Similarity=0.451 Sum_probs=105.9
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeee
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 86 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fG 86 (155)
+-+.++|..+|+..++.+... ...+.+.+|+.+ +.+|++++++|+|++|.++++..+. .+..+++|++||
T Consensus 9 l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~G~~~~~~y~i~~G~v~v~~~~~-~~~~~~~g~~fG 78 (246)
T 3of1_A 9 IRNNFLFNKLDSDSKRLVINC--LEEKSVPKGATI-------IKQGDQGDYFYVVEKGTVDFYVNDN-KVNSSGPGSSFG 78 (246)
T ss_dssp HHTCTTTTTSCHHHHHHHHTT--CEEEEECTTCEE-------ECTTCCCCEEEEEEECCEEEESTTS-CCEEECTTCEEC
T ss_pred HhcCHhhHhCCHHHHHHHHHh--hceEEECCCCEE-------EecCCCCCEEEEEEeeEEEEEECCE-EEEecCCCCeee
Confidence 446789999999999997766 567789999999 9999999999999999999997554 678999999999
Q ss_pred hhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhhh
Q psy15589 87 KLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVLV 140 (155)
Q Consensus 87 e~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~~ 140 (155)
|.+++.+.++++++.|.++ |.++.+++++|.+++..+|.....+... +++...
T Consensus 79 e~~l~~~~~~~~tv~a~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 132 (246)
T 3of1_A 79 ELALMYNSPRAATVVATSD-CLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPV 132 (246)
T ss_dssp HHHHHHTCCCSSEEEESSC-EEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHCGG
T ss_pred hhHHhcCCCCCcEEEECCC-eEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhChh
Confidence 9999999999999999995 9999999999999999998776554433 444333
No 31
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.70 E-value=2.7e-18 Score=116.02 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=96.2
Q ss_pred hhhHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe---eEE--Ec
Q psy15589 5 GWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG---CVT--SL 79 (155)
Q Consensus 5 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~---~~~--~l 79 (155)
..+-+.++|..+++...+.+... ...+.+.+|+.+ +.+|+.++.+|+|++|.+++.....+ .+. .+
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l 76 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICER--LKPCLFTEKSYL-------VREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLL 76 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHH--CBCCCBCTTEEE-------ECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEEC
T ss_pred HHHHcCcchhhCCHHHHHHHHHH--heEEEeCCCCEE-------EeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeee
Confidence 34456789999999999987665 566789999999 99999999999999999997633322 344 99
Q ss_pred cCCCeeehhhh---hcCCC------ceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHH
Q psy15589 80 YAGEDFGKLAL---VNNAP------RAATIVTREDNCHFLRVDKDDFIRIMRDVEANT 128 (155)
Q Consensus 80 ~~G~~fGe~~l---l~~~~------~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~ 128 (155)
++|++|||.++ +.+.+ ++++++|.++ |.++.|++++|.++++++|.+.
T Consensus 77 ~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~-~~~~~i~~~~~~~l~~~~p~l~ 133 (137)
T 1wgp_A 77 KEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTE-VEAFALIADELKFVASQFRRSG 133 (137)
T ss_dssp CTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSC-BEEEEEEHHHHHHHHHHHCCCT
T ss_pred cCCCEecHHHHHHHhccccccccccceeEEEEeEE-EEEEEECHHHHHHHHHHCHhhH
Confidence 99999999985 88774 5799999995 9999999999999999998764
No 32
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.69 E-value=7.3e-17 Score=116.99 Aligned_cols=122 Identities=10% Similarity=0.106 Sum_probs=97.2
Q ss_pred HhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCee
Q psy15589 10 TLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDF 85 (155)
Q Consensus 10 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~f 85 (155)
.+.|...|+...+.+... ...+.+.+|+.+ +.+|++++++|+|.+|.++++..+.+ .+..+++|++|
T Consensus 4 ~~~~~~~~~~~~~~l~~~--~~~~~~~~g~~i-------~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~ 74 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPC--GKVIVFRKGEIV-------KHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQII 74 (213)
T ss_dssp ---------CCGGGGGGG--SEEEEECTTCEE-------ECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEES
T ss_pred cccchhhccCCHHHHhcc--cEEEEECCCCEE-------EcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEe
Confidence 456777777777776665 567789999999 99999999999999999999986543 78999999999
Q ss_pred ehhhhhcCC-CceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhhhh
Q psy15589 86 GKLALVNNA-PRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVLVL 141 (155)
Q Consensus 86 Ge~~ll~~~-~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~~~ 141 (155)
|+.+++.+. ++.+++.|.++ |.++.+|++.|.+++.++|.+...+.+. ..+...+
T Consensus 75 G~~~~~~~~~~~~~~~~A~~~-~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~ 131 (213)
T 1o5l_A 75 ASGFIFSSEPRFPVNVVAGEN-SKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVV 131 (213)
T ss_dssp SGGGTTSSSCBCSSEEEESSS-EEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHhcCCCCceEEEEEccc-eEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 999999886 89999999995 9999999999999999999998766665 4444433
No 33
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.69 E-value=5.8e-17 Score=122.92 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=105.9
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeee
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 86 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fG 86 (155)
+-..++|+.+++...+.+... ...+.+.+|+.+ +.+|+.++.+|+|++|.++++..+ ..+..+++|++||
T Consensus 41 l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~G~~~~~~yiI~~G~v~v~~~g-~~~~~~~~G~~fG 110 (299)
T 3shr_A 41 ILDNDFMKNLELSQIQEIVDC--MYPVEYGKDSCI-------IKEGDVGSLVYVMEDGKVEVTKEG-VKLCTMGPGKVFG 110 (299)
T ss_dssp HHTCTTTTTSCHHHHHHHHHH--CEEEEECTTCEE-------ECTTCBCCCEEEEEESCEEEEETT-EEEEEECTTCEES
T ss_pred HhhCHHHHcCCHHHHHHHHHh--cCeEEECCCCEE-------EcCCCcCceEEEEEEEEEEEEECC-EEEEEeCCCCeee
Confidence 446788999999998886655 456778999999 999999999999999999997654 3889999999999
Q ss_pred hhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHH-Hhchhhhhhhh
Q psy15589 87 KLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLK-EHGKDVLVLER 143 (155)
Q Consensus 87 e~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~-~~~~~~~~~~~ 143 (155)
|.+++.+.++.++++|.++ |.+|.|++++|.+++..+|....... +.+++...+..
T Consensus 111 e~~ll~~~~~~~tv~a~~~-~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~~~f~~ 167 (299)
T 3shr_A 111 ELAILYNCTRTATVKTLVN-VKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQS 167 (299)
T ss_dssp CSGGGTTTBCCSEEEESSC-EEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HhHHhcCCCCCcEEEEcCC-eEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhCHHhhh
Confidence 9999999999999999995 99999999999999999988765433 33555444443
No 34
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.69 E-value=2.7e-17 Score=129.53 Aligned_cols=126 Identities=29% Similarity=0.511 Sum_probs=108.1
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeee
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 86 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fG 86 (155)
+-..++|+.+++..+..+... ...+.+.+|+.+ +.+|+.++++|+|++|.++++..+. .+..+++|++||
T Consensus 132 l~~~~lF~~L~~~~l~~l~~~--~~~~~~~~ge~I-------~~~Gd~~~~~yiI~~G~v~v~~~~~-~v~~l~~G~~fG 201 (381)
T 4din_B 132 ISKNVLFAHLDDNERSDIFDA--MFPVTHIAGETV-------IQQGNEGDNFYVVDQGEVDVYVNGE-WVTNISEGGSFG 201 (381)
T ss_dssp HTTCTTSSSCCHHHHHHHHHH--CEEEECCTTCBS-------SCTTSBCCEEEECSSSEEEEEETTE-EEEEEESSCCBC
T ss_pred HhCChhhhcCCHHHHHHHHHh--ceEEEECCCCEE-------EeCCCCCCeEEEEEeeEEEEEECCe-EeeeCCCCCEEE
Confidence 345788999999998886665 566778999999 9999999999999999999998443 888999999999
Q ss_pred hhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhhhhhh
Q psy15589 87 KLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVLVLER 143 (155)
Q Consensus 87 e~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~~~~~ 143 (155)
|++++.+.++.++++|.++ |.+|.|++++|.+++..+|.....+... ++++..+..
T Consensus 202 e~all~~~~r~atv~A~~~-~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~~f~~ 258 (381)
T 4din_B 202 ELALIYGTPRAATVKAKTD-LKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILES 258 (381)
T ss_dssp GGGGTSCCBCSSEEEESSS-CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTT
T ss_pred chHHhcCCCcceEEEECCC-EEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhHHHHh
Confidence 9999999999999999995 9999999999999999999988765554 555544443
No 35
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.68 E-value=1.7e-16 Score=118.48 Aligned_cols=111 Identities=23% Similarity=0.378 Sum_probs=94.8
Q ss_pred hhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCeeehhh
Q psy15589 14 NDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLA 89 (155)
Q Consensus 14 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe~~ 89 (155)
..+++...+.+... ...+.+.+|+.+ +.+|++++++|+|++|.++++..+.+ .+..+++|++||+.+
T Consensus 55 ~~l~~~~l~~l~~~--~~~~~~~~ge~i-------~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~ 125 (260)
T 3kcc_A 55 KPQTDPTLEWFLSH--CHIHKYPSKSTL-------IHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG 125 (260)
T ss_dssp ----CHHHHHHHTT--SEEEEECTTCEE-------ECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTT
T ss_pred CCCCHHHHHHHHhh--CEEEEECCCCEE-------ECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehH
Confidence 45677777776655 566778888888 99999999999999999999987543 789999999999999
Q ss_pred hhcCC-CceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 90 LVNNA-PRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 90 ll~~~-~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
++.+. +++++++|.++ |.++.|+++.|.+++.++|.+...+.+.
T Consensus 126 ~~~~~~~~~~~~~A~~~-~~l~~i~~~~~~~l~~~~p~l~~~l~~~ 170 (260)
T 3kcc_A 126 LFEEGQERSAWVRAKTA-CEVAEISYKKFRQLIQVNPDILMRLSAQ 170 (260)
T ss_dssp TTSTTCBCCSEEEESSC-EEEEEEEHHHHHHHHHHCTHHHHHHHHH
T ss_pred HhCCCCCCceEEEECCC-eEEEEEcHHHHHHHHHHCHHHHHHHHHH
Confidence 99998 89999999995 9999999999999999999998877665
No 36
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.67 E-value=5.6e-17 Score=129.13 Aligned_cols=124 Identities=26% Similarity=0.439 Sum_probs=105.1
Q ss_pred HHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe---eEEEccCCCe
Q psy15589 8 LRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGED 84 (155)
Q Consensus 8 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~---~~~~l~~G~~ 84 (155)
-..++|+.+++..+..+... ...+.+.+|+.+ +.+|+.++++|+|++|.++++....+ .+..+++|++
T Consensus 148 ~~~~lF~~L~~~~l~~l~~~--~~~~~~~~Ge~I-------~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~ 218 (416)
T 3tnp_B 148 KDILLFKNLDPEQMSQVLDA--MFEKLVKEGEHV-------IDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGS 218 (416)
T ss_dssp TTSHHHHTCCHHHHHHHHHH--CEEEEECTTCEE-------ECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCE
T ss_pred hCCHhHhcCCHHHHHHHHHh--cEEEEeCCCCEE-------EeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCE
Confidence 36789999999998886665 556778899988 99999999999999999999984332 7889999999
Q ss_pred eehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhhhh
Q psy15589 85 FGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVLVL 141 (155)
Q Consensus 85 fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~~~ 141 (155)
|||++++.+.++.++++|.++ |.+|.|++++|.+++..+|.....+... ++++..+
T Consensus 219 fGe~all~~~pr~atv~A~~d-~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L~~v~lf 275 (416)
T 3tnp_B 219 FGELALMYNTPKAATITATSP-GALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPFL 275 (416)
T ss_dssp ECGGGGTSCCCCSSEEEESSS-EEEEEEEHHHHHHHHHHHHHHHSSSSSSSGGGCGGG
T ss_pred EeeHHHhcCCCcccEEEEccC-eEEEEEeehhhhhhhhcchhHHHHHHHHHHhhchHh
Confidence 999999999999999999995 9999999999999999999887554333 4444333
No 37
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.67 E-value=8e-17 Score=126.79 Aligned_cols=121 Identities=24% Similarity=0.352 Sum_probs=102.9
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe-----eEEEccCCC
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG-----CVTSLYAGE 83 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~-----~~~~l~~G~ 83 (155)
+.++|..+++..+..+... ...+.+.+|+.+ +.+|+.++++|+|.+|.++++....+ .+..+++|+
T Consensus 252 ~v~~f~~Ls~~el~~l~~~--~~~~~~~~ge~I-------~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd 322 (381)
T 4din_B 252 KVSILESLEKWERLTVADA--LEPVQFEDGEKI-------VVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSD 322 (381)
T ss_dssp HCSTTTTCCTTHHHHHHTT--CBCCCBCSSCBS-------SCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTC
T ss_pred hhHHHHhccHHHHHHHHHh--hhhccCCCCCEE-------EeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCC
Confidence 4567778888877776555 455678888888 99999999999999999999986431 689999999
Q ss_pred eeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHhchhhh
Q psy15589 84 DFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVL 139 (155)
Q Consensus 84 ~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~~~~~~ 139 (155)
+|||.+++.+.++.++++|.++ |.++.|++++|.+++..+|.+..+..+.+.+.+
T Consensus 323 ~fGe~all~~~~r~~tv~A~~~-~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l 377 (381)
T 4din_B 323 YFGEIALLLNRPRAATVVARGP-LKCVKLDRPRFERVLGPCSEILKRNIQRYNSFI 377 (381)
T ss_dssp EECTTGGGSCCBCSSEEEESSC-BEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHH
T ss_pred EechHHHhCCCCceeEEEEcCC-EEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999995 999999999999999999998876665544443
No 38
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.67 E-value=1.1e-16 Score=120.72 Aligned_cols=116 Identities=24% Similarity=0.355 Sum_probs=97.5
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecC----e-eEEEccCCC
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGK----G-CVTSLYAGE 83 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~----~-~~~~l~~G~ 83 (155)
+.++|..+++..+..+... .....+.+|+.+ +.+|+.++.+|+|.+|.++++.... . .+..+++|+
T Consensus 161 ~~~lf~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~ 231 (291)
T 2qcs_B 161 KVSILESLDKWERLTVADA--LEPVQFEDGQKI-------VVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSD 231 (291)
T ss_dssp TCGGGTTCCHHHHHHHHHH--CEEEEECTTCEE-------ECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTC
T ss_pred hchHhhhCCHHHHHHHHhh--cEEEEECCCCEE-------EeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCC
Confidence 3467777777777665444 345567888888 9999999999999999999997542 1 689999999
Q ss_pred eeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 84 DFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 84 ~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
+|||.+++.+.+++++++|.+ +|.++.|++++|.+++..+|.+...+.+.
T Consensus 232 ~fGe~~ll~~~~~~~tv~a~~-~~~~~~i~~~~f~~~l~~~p~~~~~~~~~ 281 (291)
T 2qcs_B 232 YFGEIALLMNRPKAATVVARG-PLKCVKLDRPRFERVLGPCSDILKRNIQQ 281 (291)
T ss_dssp EECSGGGTCCCCCSSEEEEEE-EEEEEEEEHHHHHHHHCCHHHHHTTSHHH
T ss_pred EecHHHHcCCCCcceEEEECC-cEEEEEEcHHHHHHHhccHHHHHHHHHHH
Confidence 999999999999999999999 59999999999999999999977655444
No 39
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.66 E-value=1.9e-17 Score=143.83 Aligned_cols=129 Identities=61% Similarity=0.939 Sum_probs=109.7
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHH-hhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeeh
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARR-CASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGK 87 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe 87 (155)
..++|+.++...+..+... ...+. +.+|+.+ +++||.++.+|||++|.|.|+......+..|++||+|||
T Consensus 341 ~i~~f~~Ls~~v~r~L~~~--l~~~~~~kaGtvI-------~rQGE~gds~YIIlsG~V~V~~~~~~~v~~L~~Gd~FGE 411 (999)
T 4f7z_A 341 HIKALSHLSTTVKRELAGV--LIFESHAKGGTVL-------FNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGK 411 (999)
T ss_dssp TCGGGTTSCHHHHHHHTTT--CEEEEESSTTCEE-------ECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCEECG
T ss_pred hhHHHhcCCHHHHHHHHHh--hhhheeccCCCEE-------EeCCCcCCeEEEEEeeEEEEEEcCCcceEEecCCCcccc
Confidence 3467778887777775444 23233 3457777 999999999999999999999877768999999999999
Q ss_pred hhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHhchhhhhhhhhhc
Q psy15589 88 LALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLERMVN 146 (155)
Q Consensus 88 ~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 146 (155)
++++++.||.+|++|.+|+|.++.+++++|.+++.+..+..+++.+..+.++++++...
T Consensus 412 lALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~e~~~~~~~e~~~~v~v~e~~~~ 470 (999)
T 4f7z_A 412 LALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRDVEANTVRLKEHDQDVLVLEKVPA 470 (999)
T ss_dssp GGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHHHHSEEEEESSSSEEEEEECC--
T ss_pred hhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhHHHHhhhHhhhcccceeEEEEeec
Confidence 99999999999999998669999999999999999999998898888999999998654
No 40
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.65 E-value=2.7e-17 Score=110.99 Aligned_cols=110 Identities=22% Similarity=0.462 Sum_probs=96.1
Q ss_pred hhHHHhhhhhhhHHHHHHHhhcCHHHHHHhh-cchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCe
Q psy15589 6 WVLRTLLLNDESGTLRDRKTSGGRTIARRCA-SGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGED 84 (155)
Q Consensus 6 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~ 84 (155)
.+-..++|..+++..++.+... ...+.+. +|+.+ +.+|+.++++|+|++|.++++..++.. .++++|++
T Consensus 17 ~l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~~g~~i-------~~~g~~~~~~y~i~~G~v~~~~~~g~~-~~l~~G~~ 86 (134)
T 2d93_A 17 FMHQLPAFANMTMSVRRELCSV--MIFEVVEQAGAII-------LEDGQELDSWYVILNGTVEISHPDGKV-ENLFMGNS 86 (134)
T ss_dssp HHHHSSTTTSSCHHHHHHHTTT--EEEEEECSSSCEE-------ECTTCEECEEEECCBSCEEEECSSSCE-EEECTTCE
T ss_pred HHhCCcchhhCCHHHHHHHHHh--heEEEecCCCCEE-------EeCCCCCCeEEEEEeCEEEEEcCCCcE-EEecCCCc
Confidence 3456788999999999987666 5667788 89988 999999999999999999999754434 77999999
Q ss_pred eehhhhhcCCCceeEE-EEecCcEEEEEEcHHHHHHHHHhhHH
Q psy15589 85 FGKLALVNNAPRAATI-VTREDNCHFLRVDKDDFIRIMRDVEA 126 (155)
Q Consensus 85 fGe~~ll~~~~~~~~~-~a~~~~~~vl~l~~~~f~~l~~~~~~ 126 (155)
||+.+++.+.++.+++ .|.++ |.++.|++++|.+++.+.+.
T Consensus 87 fG~~~~~~~~~~~~~~~~a~~~-~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 87 FGITPTLDKQYMHGIVRTKVDD-CQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp ESCCSSSCCEECCSEEEESSSS-EEEEEEEHHHHHHHSSCCSS
T ss_pred cChhHhcCCCcceeEEEEEecc-eEEEEEeHHHHHHHHHHHHh
Confidence 9999999999999998 99995 99999999999999987654
No 41
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.65 E-value=4.3e-16 Score=113.14 Aligned_cols=110 Identities=20% Similarity=0.194 Sum_probs=97.0
Q ss_pred HHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe---eEEEccCCCe
Q psy15589 8 LRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGED 84 (155)
Q Consensus 8 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~---~~~~l~~G~~ 84 (155)
-+.++|..+|+...+.+... ...+.+.+|+.+ +.+|++++++|+|.+|.++++....+ .+..+++|++
T Consensus 7 ~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~ 77 (220)
T 2fmy_A 7 TDTNLLEVLNSEEYSGVLKE--FREQRYSKKAIL-------YTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDI 77 (220)
T ss_dssp CSSCHHHHTTSGGGTTTGGG--SEEEEECTTCEE-------ECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCE
T ss_pred hcChhhhcCCHHHHHHHHHh--hheeEeCCCCEE-------ECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCE
Confidence 35689999999999987666 567789999999 99999999999999999999643322 7899999999
Q ss_pred eehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 85 FGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 85 fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
||+ ++.+++.|.++ |.++.+|+++|.+++.++|.+...+.+.
T Consensus 78 ~G~-------~~~~~~~A~~~-~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 119 (220)
T 2fmy_A 78 FCT-------HTRAFIQAMED-TTILYTDIRNFQNIVVEFPAFSLNMVKV 119 (220)
T ss_dssp EES-------CSSSEEEESSS-EEEEEEEHHHHHHHHHHCTHHHHHHHHH
T ss_pred eCC-------ccceEEEEcCc-EEEEEEeHHHHHHHHHHCHHHHHHHHHH
Confidence 999 88999999995 9999999999999999999999877766
No 42
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.63 E-value=2.5e-16 Score=125.34 Aligned_cols=116 Identities=24% Similarity=0.334 Sum_probs=98.5
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecC-------e---eEEE
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGK-------G---CVTS 78 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~-------~---~~~~ 78 (155)
+.++|..+++..+..+... ...+.+.+|+.+ +.+|+.++++|+|.+|.++++.... + .+..
T Consensus 271 ~v~lf~~Ls~~el~~L~~~--l~~~~~~~Ge~I-------~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~ 341 (416)
T 3tnp_B 271 SLPFLKSLEVSERLKVVDV--IGTKVYNDGEQI-------IAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIAR 341 (416)
T ss_dssp GCGGGTTCCHHHHHHHHHH--CEEEEECTTCEE-------ECTTSCCCEEEEEEEEEEEEECC------------CEEEE
T ss_pred hchHhhcCCHHHHHHHHhh--ceEEEECCCCEE-------EeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEE
Confidence 4578888888888886555 456678888888 9999999999999999999987543 1 7899
Q ss_pred ccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 79 LYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 79 l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
+++|++|||.+++.+.++.++++|.+ +|.++.|++++|.+++..+|.+...+.+.
T Consensus 342 l~~G~~fGE~all~~~~r~~tv~A~~-~~~ll~I~~~~f~~ll~~~p~i~~~~~~~ 396 (416)
T 3tnp_B 342 CFRGQYFGELALVTNKPRAASAHAIG-TVKCLAMDVQAFERLLGPCMEIMKRNIAT 396 (416)
T ss_dssp ECTTCEESGGGGTCCSCCSSEEEEEE-EEEEEEEEHHHHHHHHCCHHHHHTCC---
T ss_pred eCCCCEecHHHHhCCCCceeEEEEcC-CeEEEEEEHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999999999999999999 49999999999999999999988665544
No 43
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.62 E-value=1e-15 Score=113.34 Aligned_cols=114 Identities=16% Similarity=0.094 Sum_probs=99.0
Q ss_pred hhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCeeehhh
Q psy15589 14 NDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLA 89 (155)
Q Consensus 14 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe~~ 89 (155)
..+|+...+.+... ...+.+.+|+.+ +.+|++++++|+|.+|.++++..+.+ .+..+++|++||+
T Consensus 18 ~~l~~~~l~~l~~~--~~~~~~~~g~~i-------~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~-- 86 (250)
T 3e6c_C 18 NFFPIEKLRNYTQM--GLIRDFAKGSAV-------IMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK-- 86 (250)
T ss_dssp SCSCCGGGGGGGGG--SEEEEECTTCEE-------ECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--
T ss_pred hhCCHHHHHHHHhh--CeEEEECCCCEE-------ECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--
Confidence 67788888887666 677789999999 99999999999999999999987543 7899999999999
Q ss_pred hhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh-chhhhh
Q psy15589 90 LVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH-GKDVLV 140 (155)
Q Consensus 90 ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~-~~~~~~ 140 (155)
++.+. +.+++.|.++ |.++.+|++.|.+++.++|.+...+.+. ..+...
T Consensus 87 ~l~~~-~~~~~~A~~~-~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 136 (250)
T 3e6c_C 87 LYPTG-NNIYATAMEP-TRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAY 136 (250)
T ss_dssp CSCCS-CCEEEEESSS-EEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred ecCCC-CceEEEEccc-EEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 77888 9999999995 9999999999999999999999877766 444333
No 44
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.62 E-value=2.8e-15 Score=110.71 Aligned_cols=106 Identities=15% Similarity=0.260 Sum_probs=91.1
Q ss_pred HHHHHHhhcCHHH---HHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCeeehhhhh
Q psy15589 19 TLRDRKTSGGRTI---ARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALV 91 (155)
Q Consensus 19 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe~~ll 91 (155)
...+.+... .. ++.+.+|+.+ +.+|++++++|+|++|.++++..+.+ .+..+++|++||+.+++
T Consensus 31 ~~l~~L~~~--~~~~~~~~~~~ge~i-------~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~ 101 (243)
T 3la7_A 31 NVFRQMATG--AFPPVVETFERNKTI-------FFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLL 101 (243)
T ss_dssp HHHHHHCCS--SCCCEEEEECTTCEE-------ECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHH
T ss_pred HHHHHHhhc--cchheeEEECCCCEE-------EcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHh
Confidence 344445444 44 6778899988 99999999999999999999986543 78999999999999999
Q ss_pred cCCC--ceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 92 NNAP--RAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 92 ~~~~--~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
.+.+ +.++++|.++ |.++.++++.|.+++.++|.+...+.+.
T Consensus 102 ~~~~~~~~~~~~A~~~-~~v~~i~~~~~~~l~~~~p~~~~~l~~~ 145 (243)
T 3la7_A 102 TGNKSDRFYHAVAFTP-VELLSAPIEQVEQALKENPELSMLMLRG 145 (243)
T ss_dssp SSCCSBCCEEEEESSS-EEEEEEEHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCcceEEEEEccc-eEEEEEcHHHHHHHHHHCHHHHHHHHHH
Confidence 9987 5589999995 9999999999999999999999877766
No 45
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.61 E-value=9.4e-16 Score=111.59 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=95.8
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecC-e--eEEEccCCCee
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGK-G--CVTSLYAGEDF 85 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~-~--~~~~l~~G~~f 85 (155)
+.++|..+|+...+.+... ...+.+.+|+.+ +.+|++++++|+|.+|.++++.... . .+..+++|++|
T Consensus 4 ~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~f 74 (222)
T 1ft9_A 4 RFNIANVLLSPDGETFFRG--FRSKIHAKGSLV-------CTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMF 74 (222)
T ss_dssp CCCTHHHHTSTTTTTTTTT--CEEEEECTTCEE-------ECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEE
T ss_pred cchhhhcCCHHHHHHHHhh--CcEEEECCCCEE-------ECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEe
Confidence 4578999999999887666 667889999999 9999999999999999999973322 2 68999999999
Q ss_pred ehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 86 GKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 86 Ge~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
| .++++++.|.++ |.++.+|++.|.+++..+|.+...+.+.
T Consensus 75 G-------~~~~~~~~A~~~-~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 115 (222)
T 1ft9_A 75 C-------MHSGCLVEATER-TEVRFADIRTFEQKLQTCPSMAWGLIAI 115 (222)
T ss_dssp E-------SCSSCEEEESSC-EEEEEECHHHHHHHHHHCGGGHHHHHHH
T ss_pred c-------CCCCEEEEEccc-eEEEEEeHHHHHHHHHHChHHHHHHHHH
Confidence 9 688999999995 9999999999999999999998877766
No 46
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.59 E-value=5.7e-15 Score=108.65 Aligned_cols=111 Identities=5% Similarity=0.042 Sum_probs=89.9
Q ss_pred hhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCeeehhhh
Q psy15589 15 DESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLAL 90 (155)
Q Consensus 15 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe~~l 90 (155)
+++++..+.+........+.+.+|+.+ +.+|++++++|+|++|.|+++..+.+ .+..+ +|++||+.++
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i-------~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~ 74 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELI-------FNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGF 74 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEE-------ECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBC
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEE-------EeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhh
Confidence 566666666432101355678999999 99999999999999999999986543 67778 9999999999
Q ss_pred hcCCCc--eeEEEEe-cCcEEEEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 91 VNNAPR--AATIVTR-EDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 91 l~~~~~--~~~~~a~-~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
+.+.++ ..++.|. ++ |.++.||++.|.+++.++|.+...+.+.
T Consensus 75 ~~~~~~~~~~~~~a~~~~-~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 120 (238)
T 2bgc_A 75 IDTETSVGYYNLEVISEQ-ATAYVIKINELKELLSKNLTHFFYVFQT 120 (238)
T ss_dssp TTTCCBSCCCEEEECSSE-EEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred hcCCCcCcceeEEEEEcc-eEEEEEeHHHHHHHHHHCHHHHHHHHHH
Confidence 998864 5666676 65 9999999999999999999999877766
No 47
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.59 E-value=6.8e-16 Score=123.76 Aligned_cols=116 Identities=28% Similarity=0.452 Sum_probs=101.0
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecC------eeEEEcc
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGK------GCVTSLY 80 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~------~~~~~l~ 80 (155)
+-+.++|..+++...+.+... ...+.+.+|+.+ +.+|+.++++|+|++|.++++.... ..+..++
T Consensus 44 l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i-------~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~ 114 (469)
T 1o7f_A 44 LKGVKAFEKFHPNLLRQICLC--GYYENLEKGITL-------FRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLG 114 (469)
T ss_dssp HTTCTTTTTCCHHHHHHHHHH--CEEEEECTTCEE-------ECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEEC
T ss_pred HhCCHhhhcCCHHHHHHHHHh--ceEEEECCCCEE-------EeCCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEcc
Confidence 345688999999998886555 456779999999 9999999999999999999998653 2789999
Q ss_pred CCCeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHH
Q psy15589 81 AGEDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKE 133 (155)
Q Consensus 81 ~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~ 133 (155)
+|++||+.+ +.+.+++++++|.++ |.++.|++++|.+++.++|.+...+.+
T Consensus 115 ~G~~fGe~~-l~~~~~~~tv~A~~~-~~l~~i~~~~~~~l~~~~p~~~~~l~~ 165 (469)
T 1o7f_A 115 IGTAFGESI-LDNTPRHATIVTRES-SELLRIEQEDFKALWEKYRQYMAGLLA 165 (469)
T ss_dssp TTCEECGGG-GGTCBCSSEEEESSS-EEEEEEEHHHHHHHHHHHGGGTTTTSC
T ss_pred CCCCcchhh-hCCCCccceEEEccc-eeEEEEcHHHHHHHHHhCHHHHHHHHH
Confidence 999999999 999999999999995 999999999999999999986655443
No 48
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.56 E-value=2.4e-16 Score=122.88 Aligned_cols=116 Identities=20% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehh
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKL 88 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~ 88 (155)
..++|++++++..+.+... ...+.+.+|+.+ +++|++++++|+|.+|.++++..+ ...+++|++|||.
T Consensus 232 ~~~lf~~ls~~~l~~l~~~--~~~~~~~~ge~I-------~~~G~~~~~ly~I~~G~v~v~~~~---~~~l~~G~~fGe~ 299 (355)
T 3beh_A 232 AVPLFQKLGPAVLVEIVRA--LRARTVPAGAVI-------CRIGEPGDRMFFVVEGSVSVATPN---PVELGPGAFFGEM 299 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCCHHHHHHHHHh--ceEEEECCCCEE-------EeCCCcCceEEEEEeeEEEEEECC---eeEECCCCEEeeh
Confidence 4578888999888887666 677889999999 999999999999999999999876 3578999999999
Q ss_pred hhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHHHHhchh
Q psy15589 89 ALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKD 137 (155)
Q Consensus 89 ~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~~~~ 137 (155)
+++.+.+++++++|.++ |+++.+++++|.++++++|++...+.+.+.+
T Consensus 300 ~~l~~~~~~~~~~A~~~-~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~ 347 (355)
T 3beh_A 300 ALISGEPRSATVSAATT-VSLLSLHSADFQMLCSSSPEIAEIFRKTALE 347 (355)
T ss_dssp -------------------------------------------------
T ss_pred HHhCCCCcceEEEECcc-EEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999999999995 9999999999999999999999888776433
No 49
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.56 E-value=4.1e-15 Score=129.29 Aligned_cols=112 Identities=29% Similarity=0.506 Sum_probs=99.5
Q ss_pred HHhhhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe------eEEEccCC
Q psy15589 9 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG------CVTSLYAG 82 (155)
Q Consensus 9 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~------~~~~l~~G 82 (155)
+..+|+++++.+...+... ..++.+.+|+.+ |++||.++++|+|++|.|.|+....+ .+..+++|
T Consensus 46 ~~~~f~~l~~~~l~~l~~~--m~ye~~~~Ge~I-------frqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G 116 (999)
T 4f7z_A 46 GVKAFEKFHPNLLRQICLC--GYYENLEKGITL-------FRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIG 116 (999)
T ss_dssp TCTTTTTCCHHHHHHHHHH--CEEEEECTTCEE-------ECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETT
T ss_pred CCHhhhcCCHHHHHHHHhh--eEEEEECCCCEE-------EcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCC
Confidence 5678999999998886666 677889999999 99999999999999999999975332 68899999
Q ss_pred CeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHHhhHHHHHHH
Q psy15589 83 EDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRL 131 (155)
Q Consensus 83 ~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~~~~~~~~~l 131 (155)
+.||| +++.+.||+++++|.++ |.+|++++++|..++.++|.....+
T Consensus 117 ~sFGE-all~n~pRtaTv~a~~~-s~l~~l~r~~F~~i~~~~~e~~~~~ 163 (999)
T 4f7z_A 117 TAFGE-SILDNTPRHATIVTRES-SELLRIEQEDFKALWEKYRQYMAGL 163 (999)
T ss_dssp CEECG-GGGGTCCCSSEEEESSS-EEEEEEEHHHHHHHHHHHHHHHTTT
T ss_pred cchhh-hhccCCCcceEEEeccc-eEEEEEEHHHHHHHHHhChHHHHHH
Confidence 99999 89999999999999995 9999999999999999998866543
No 50
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.55 E-value=4e-16 Score=131.20 Aligned_cols=127 Identities=62% Similarity=0.992 Sum_probs=110.1
Q ss_pred hHHHhhhhhhhHHHHHHHhhcCHHH-HHHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 7 VLRTLLLNDESGTLRDRKTSGGRTI-ARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
+...++|..+++...+.+... .. .+.+.+|+.+ +.+|+.++++|+|++|.|+++..+...+..+++|++|
T Consensus 34 L~~~~lF~~Ls~~~l~~L~~~--~~~~~~~~kGe~I-------~~eGd~~~~lyiIlsG~V~v~~~g~~il~~l~~Gd~f 104 (694)
T 3cf6_E 34 LLHIKALSHLSTTVKRELAGV--LIFESHAKGGTVL-------FNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDF 104 (694)
T ss_dssp HTTCGGGTTSCHHHHHHHHTT--CEEEEECSTTCEE-------ECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCEE
T ss_pred HHcChhhccCCHHHHHHHHHh--cceEEEECCCCEE-------ECCCCcCCeEEEEEEEEEEEEEeCCEEEEEeCCCCEe
Confidence 446788999999999887655 33 4578899998 9999999999999999999998765589999999999
Q ss_pred ehhhhhcCCCceeEEEEec-CcEEEEEEcHHHHHHHHHhhHHHHHHHHHhchhhhhhhh
Q psy15589 86 GKLALVNNAPRAATIVTRE-DNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLER 143 (155)
Q Consensus 86 Ge~~ll~~~~~~~~~~a~~-~~~~vl~l~~~~f~~l~~~~~~~~~~l~~~~~~~~~~~~ 143 (155)
||.+++.+.++.++++|.+ + |.++.|++++|.+++.++|.+...+.+.++++.++++
T Consensus 105 Ge~al~~~~~~~~tv~A~edd-~~ll~I~~~~f~~ll~~~p~l~~~l~~~~~~v~~l~~ 162 (694)
T 3cf6_E 105 GKLALVNDAPRAASIVLREDN-CHFLRVDKEDFNRILRDVEANTVRLKEHDQDVLVLEK 162 (694)
T ss_dssp CHHHHHHTCBCSSEEEECSSS-EEEEEEEHHHHHHHTTTTCCCCEEEEETTEEEEEEEE
T ss_pred ehHHHhCCCCceEEEEEeeCc-eEEEEEeHHHHHHHHHHCHHHHHHHHHHHhHHHHHHh
Confidence 9999999999999999999 4 9999999999999999999998776655666556554
No 51
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.54 E-value=1.6e-14 Score=103.09 Aligned_cols=87 Identities=16% Similarity=0.272 Sum_probs=75.2
Q ss_pred HHhhcchhhHHHHhhcccccccCCeEEEEEecEEEEEEecCe----eEEEccCCCeeehhhhhcCCCceeEEEEecCcEE
Q psy15589 33 RRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAPRAATIVTREDNCH 108 (155)
Q Consensus 33 ~~~~~~~~~~~~~~~i~~~g~~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~ 108 (155)
+++.+|+.+ +.+|++++++|+|++|.++++..+.+ .+..+++|++||+ +++.+.++.+++.|.++ |.
T Consensus 2 ~~~~~g~~i-------~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~-~~ 72 (195)
T 3b02_A 2 KRFARKETI-------YLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTE-AV 72 (195)
T ss_dssp EEECTTCEE-------ECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSS-EE
T ss_pred eEcCCCCEE-------ECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCc-EE
Confidence 346778888 99999999999999999999986543 6899999999999 99999999999999995 99
Q ss_pred EEEEcHHHHHHHHHhhHHHHHHHHHh
Q psy15589 109 FLRVDKDDFIRIMRDVEANTVRLKEH 134 (155)
Q Consensus 109 vl~l~~~~f~~l~~~~~~~~~~l~~~ 134 (155)
++.+|++.|. |.+...+.+.
T Consensus 73 v~~i~~~~~~------p~~~~~~~~~ 92 (195)
T 3b02_A 73 VQGLEPRAMD------HEALHRVARN 92 (195)
T ss_dssp EEEECGGGCC------HHHHHHHHHH
T ss_pred EEEEcHHHcC------HHHHHHHHHH
Confidence 9999999997 6665555444
No 52
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.32 E-value=1.7e-12 Score=93.00 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=68.9
Q ss_pred HHHhhcchhhHHHHhhcccccccC--CeEEEEEecEEEEEEecCe----eEEEccCCCeeehhhhhcCCCceeEEEEecC
Q psy15589 32 ARRCASGSELVDWLMTMFHQGDEG--KSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAPRAATIVTRED 105 (155)
Q Consensus 32 ~~~~~~~~~~~~~~~~i~~~g~~~--~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~ 105 (155)
.+.+.+|+.+ +.+|+++ +++|+|++|.++++..+.+ .+..++||++||+ +++.+.++.+++.|.++
T Consensus 7 ~~~~~~g~~i-------~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~ 78 (202)
T 2zcw_A 7 TVSFKAGDVI-------LYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATD 78 (202)
T ss_dssp CEEECTTCEE-------ECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSC
T ss_pred EEEECCCCEE-------ECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEccc
Confidence 3567888888 9999999 9999999999999986543 6899999999999 99999999999999995
Q ss_pred cEEEEEEcHHHHH
Q psy15589 106 NCHFLRVDKDDFI 118 (155)
Q Consensus 106 ~~~vl~l~~~~f~ 118 (155)
|.++.+ ++.|.
T Consensus 79 -~~v~~i-~~~~~ 89 (202)
T 2zcw_A 79 -VRLEPL-PENPD 89 (202)
T ss_dssp -EEEEEC-CSSCC
T ss_pred -EEEEEE-hHhcC
Confidence 999999 88775
No 53
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=82.08 E-value=7.6 Score=24.68 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=29.9
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEE
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATI 100 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~ 100 (155)
..+.+++|++|.+.+... + ....+++||.+ -+-.+.+...+.
T Consensus 58 ~~~E~~~Vl~G~~~~~~~-g-~~~~l~~GD~v---~ip~g~~H~~~~ 99 (119)
T 3lwc_A 58 AVDDVMIVLEGRLSVSTD-G-ETVTAGPGEIV---YMPKGETVTIRS 99 (119)
T ss_dssp SSEEEEEEEEEEEEEEET-T-EEEEECTTCEE---EECTTCEEEEEE
T ss_pred CCCEEEEEEeCEEEEEEC-C-EEEEECCCCEE---EECCCCEEEEEc
Confidence 567999999999999883 3 56679999966 333455544443
No 54
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=78.97 E-value=9.2 Score=25.69 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=23.4
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
.+.+++|++|.+.+.. ++ ....+++||.+
T Consensus 84 ~eE~~yVLeG~~~l~i-~g-~~~~l~~GD~i 112 (151)
T 4axo_A 84 YDEIDYVIDGTLDIII-DG-RKVSASSGELI 112 (151)
T ss_dssp SEEEEEEEEEEEEEEE-TT-EEEEEETTCEE
T ss_pred CcEEEEEEEeEEEEEE-CC-EEEEEcCCCEE
Confidence 5578889999999996 33 56789999966
No 55
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=78.78 E-value=3.6 Score=25.54 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=24.7
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
+...+++|++|.+.+...++ ....+++||.+
T Consensus 48 ~~~E~~~Vl~G~~~~~i~~g-~~~~l~~GD~i 78 (101)
T 1o5u_A 48 DTNETCYILEGKVEVTTEDG-KKYVIEKGDLV 78 (101)
T ss_dssp SSCEEEEEEEEEEEEEETTC-CEEEEETTCEE
T ss_pred CceEEEEEEeCEEEEEECCC-CEEEECCCCEE
Confidence 45789999999999988633 55678999965
No 56
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=78.50 E-value=6.5 Score=24.53 Aligned_cols=44 Identities=11% Similarity=0.300 Sum_probs=30.5
Q ss_pred ccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeE
Q psy15589 53 DEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAAT 99 (155)
Q Consensus 53 ~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~ 99 (155)
...+.+++|++|.+.+...+......+++||.+ -+-.+.+....
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i---~ipa~~~H~~~ 94 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTAPRVMRPGDWL---HVPAHCRHRVA 94 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSSCEEECTTEEE---EECTTCCEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEEEEEECCCCEE---EECCCCcEEEE
Confidence 356689999999999988766322679999966 33345554443
No 57
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=76.00 E-value=5 Score=27.48 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=33.5
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEE
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLR 111 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~ 111 (155)
..+.+++|++|.+.+...+. ...+++||.| -+-.+.++...-...+ .++++.
T Consensus 109 ~gEE~~yVLeG~v~vtl~g~--~~~L~~Gds~---~iP~g~~H~~~N~~d~-~Arll~ 160 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTVCKN--KFLSVKGSTF---QIPAFNEYAIANRGND-EAKMFF 160 (166)
T ss_dssp SEEEEEEEEESEEEEEETTE--EEEEETTCEE---EECTTCEEEEEECSSS-CEEEEE
T ss_pred CceEEEEEEEeEEEEEECCE--EEEEcCCCEE---EECCCCCEEEEECCCC-CEEEEE
Confidence 35679999999999988654 5578999976 2333444444433333 355544
No 58
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=75.94 E-value=2.4 Score=27.37 Aligned_cols=30 Identities=7% Similarity=0.039 Sum_probs=24.9
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
.+.++.|++|.+.+...++ ....+++||.|
T Consensus 61 ~~E~~~iLeG~~~lt~ddG-~~~~l~aGD~~ 90 (116)
T 3es4_A 61 LEETFVVVEGEALYSQADA-DPVKIGPGSIV 90 (116)
T ss_dssp EEEEEEEEECCEEEEETTC-CCEEECTTEEE
T ss_pred CcEEEEEEEeEEEEEeCCC-eEEEECCCCEE
Confidence 3478999999999998776 56778999976
No 59
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=75.89 E-value=5.8 Score=24.89 Aligned_cols=51 Identities=20% Similarity=0.136 Sum_probs=31.3
Q ss_pred CeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEE
Q psy15589 56 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLR 111 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~ 111 (155)
..+++|++|.+.+...++ ....+++||.+ .+-.+.+........+ ++.++.
T Consensus 61 ~e~~~Vl~G~~~~~~~~~-~~~~l~~Gd~~---~i~~~~~H~~~n~~~~-~~~~l~ 111 (125)
T 3h8u_A 61 QDTWTVISGEAEYHQGNG-IVTHLKAGDIA---IAKPGQVHGAMNSGPE-PFIFVS 111 (125)
T ss_dssp EEEEEEEECEEEEECSTT-CEEEEETTEEE---EECTTCCCEEEECSSS-CEEEEE
T ss_pred eEEEEEEEeEEEEEECCC-eEEEeCCCCEE---EECCCCEEEeEeCCCC-CEEEEE
Confidence 578889999999876333 45678999865 2334555544333233 344443
No 60
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=75.70 E-value=9 Score=27.14 Aligned_cols=56 Identities=13% Similarity=0.306 Sum_probs=40.1
Q ss_pred ccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEE
Q psy15589 49 FHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRV 112 (155)
Q Consensus 49 ~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l 112 (155)
-..-.+.+.+++|++|.+++...+. ...+++||++ -+-.+.+... .|.++ +.++.+
T Consensus 51 ~~h~h~~~~~~~Vl~G~~~~~i~~~--~~~l~~Gd~~---~~p~~~~H~~--~a~~~-~~~l~i 106 (227)
T 3rns_A 51 TAEAMLGNRYYYCFNGNGEIFIENN--KKTISNGDFL---EITANHNYSI--EARDN-LKLIEI 106 (227)
T ss_dssp EECSCSSCEEEEEEESEEEEEESSC--EEEEETTEEE---EECSSCCEEE--EESSS-EEEEEE
T ss_pred CccccCCCEEEEEEeCEEEEEECCE--EEEECCCCEE---EECCCCCEEE--EECCC-cEEEEE
Confidence 4445567899999999999988754 4678999865 4445556544 46774 888766
No 61
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=75.55 E-value=3 Score=26.96 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=28.0
Q ss_pred CeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCcee
Q psy15589 56 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAA 98 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~ 98 (155)
+.+++|++|.+.+...++ ....+++||.+ -+-.+.+...
T Consensus 69 ~E~~~Vl~G~~~l~~~~g-~~~~l~~GD~~---~ip~g~~h~~ 107 (123)
T 3bcw_A 69 IEYCHIIEGEARLVDPDG-TVHAVKAGDAF---IMPEGYTGRW 107 (123)
T ss_dssp EEEEEEEEEEEEEECTTC-CEEEEETTCEE---EECTTCCCEE
T ss_pred cEEEEEEEEEEEEEECCC-eEEEECCCCEE---EECCCCeEEE
Confidence 789999999999988554 45678999976 3334444333
No 62
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=75.46 E-value=4.4 Score=27.04 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=39.5
Q ss_pred ccccccCCeEEEEEecEEEEEEecC------eeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcHH
Q psy15589 49 FHQGDEGKSWYIIIQGSVDVVIYGK------GCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDKD 115 (155)
Q Consensus 49 ~~~g~~~~~lyii~~G~v~v~~~~~------~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~ 115 (155)
++.-+..+.+|++++|.+.+...+. +..-.+++|++|= +-.|.-.. -.|.+ .|.++.+...
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yv---VPkGveH~--p~a~~-e~~vLLiEp~ 110 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYN---VPAECWFY--SITQK-DTKMMYVQDS 110 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEE---ECTTCEEE--EEECT-TCEEEEEEES
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEE---eCCCccCc--ccCCC-ceEEEEEEeC
Confidence 4455667899999999999987743 2456789998772 22332222 22345 4777777554
No 63
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=75.04 E-value=5.8 Score=24.17 Aligned_cols=55 Identities=11% Similarity=0.207 Sum_probs=37.0
Q ss_pred CeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHH
Q psy15589 56 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDF 117 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f 117 (155)
..++++++|.+.+...++ ....+++||.+ -+-.+.+..... .+ ++.++.+.....
T Consensus 49 ~E~~~Vl~G~~~~~~~~~-~~~~l~~Gd~~---~ip~~~~H~~~~--~~-~~~~l~i~~~~~ 103 (107)
T 2i45_A 49 DKVLFAVEGDMAVDFADG-GSMTIREGEMA---VVPKSVSHRPRS--EN-GCSLVLIELSDP 103 (107)
T ss_dssp CEEEEESSSCEEEEETTS-CEEEECTTEEE---EECTTCCEEEEE--EE-EEEEEEEECC--
T ss_pred CEEEEEEeCEEEEEECCC-cEEEECCCCEE---EECCCCcEeeEe--CC-CeEEEEEECCCc
Confidence 789999999999988773 35678999866 334455554443 35 477777765543
No 64
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=74.87 E-value=4.3 Score=27.93 Aligned_cols=30 Identities=10% Similarity=0.278 Sum_probs=23.7
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
...+++|++|++++...++ ....+++||.+
T Consensus 99 ~eE~~~VLeGel~l~ld~g-e~~~L~~GDsi 128 (172)
T 3es1_A 99 SIDYGIVLEGEIELELDDG-AKRTVRQGGII 128 (172)
T ss_dssp EEEEEEEEESCEEEECGGG-CEEEECTTCEE
T ss_pred ceEEEEEEeCEEEEEECCC-eEEEECCCCEE
Confidence 3467799999999987644 45679999986
No 65
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=69.58 E-value=7.3 Score=25.36 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=23.6
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
.+.+++|++|.+.+... + ....+++||.|
T Consensus 75 ~~E~~~VLeG~~~l~~~-g-~~~~l~~GD~i 103 (133)
T 2pyt_A 75 YDEIDMVLEGELHVRHE-G-ETMIAKAGDVM 103 (133)
T ss_dssp SEEEEEEEEEEEEEEET-T-EEEEEETTCEE
T ss_pred CCEEEEEEECEEEEEEC-C-EEEEECCCcEE
Confidence 56889999999999886 3 44579999966
No 66
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=68.69 E-value=13 Score=25.25 Aligned_cols=55 Identities=16% Similarity=0.293 Sum_probs=34.2
Q ss_pred cCCeEEEEEecEEEEEEecCe--eEEEccCCCeeehhhhhcCCCceeEEE-EecCcEEEEEE
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKG--CVTSLYAGEDFGKLALVNNAPRAATIV-TREDNCHFLRV 112 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~--~~~~l~~G~~fGe~~ll~~~~~~~~~~-a~~~~~~vl~l 112 (155)
+...+++|++|.+.+...+.+ ....+++||.+ -+-.+.+...... ..+ ++.++.+
T Consensus 139 ~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~---~~~~~~~H~~~n~~~~~-~~~~l~v 196 (198)
T 2bnm_A 139 AGNEFLFVLEGEIHMKWGDKENPKEALLPTGASM---FVEEHVPHAFTAAKGTG-SAKLIAV 196 (198)
T ss_dssp SSCEEEEEEESCEEEEESCTTSCEEEEECTTCEE---EECTTCCEEEEESTTSC-CEEEEEE
T ss_pred CCeEEEEEEeeeEEEEECCcCCcccEEECCCCEE---EeCCCCceEEEecCCCC-CeEEEEE
Confidence 346888999999999886621 46689999976 2333445443322 223 3665543
No 67
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=68.10 E-value=9.3 Score=26.41 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=30.5
Q ss_pred cCCeEEEEEecEEEEEEecCe--eEEEccCCCeeehhhhhcCCCce
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKG--CVTSLYAGEDFGKLALVNNAPRA 97 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~--~~~~l~~G~~fGe~~ll~~~~~~ 97 (155)
+.+.++++++|.+.+...+++ ..-.+++||+| -+-.|.+..
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f---~lP~gvpH~ 96 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIF---LLPPHVRHS 96 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEEEEEECTTCEE---EECTTCCEE
T ss_pred CCceEEEEEeeEEEEEEEcCCceeeEEECCCCEE---EeCCCCCcC
Confidence 567999999999999887743 45678999988 344455543
No 68
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=67.10 E-value=17 Score=21.44 Aligned_cols=50 Identities=16% Similarity=0.484 Sum_probs=33.5
Q ss_pred CeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEc
Q psy15589 56 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVD 113 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~ 113 (155)
..++++++|.+.+...+. ...+++||.+ -+-.+.+..... .+ ++.++.++
T Consensus 51 ~e~~~v~~G~~~~~~~~~--~~~l~~Gd~~---~ip~~~~H~~~~--~~-~~~~l~i~ 100 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFRDQ--NITLQAGEMY---VIPKGVEHKPMA--KE-ECKIMIIE 100 (102)
T ss_dssp CEEEEEEESEEEEECSSC--EEEEETTEEE---EECTTCCBEEEE--EE-EEEEEEEE
T ss_pred cEEEEEEeCEEEEEECCE--EEEEcCCCEE---EECCCCeEeeEc--CC-CCEEEEEE
Confidence 689999999999876554 4567898865 333455554433 35 37777765
No 69
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=64.87 E-value=6.7 Score=28.11 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=29.6
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeE
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAAT 99 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~ 99 (155)
+.+.+|+|++|.++....++ ....+++|+.+ -.-.|.+....
T Consensus 151 p~EEiy~VLsG~~e~~v~~g-~~~~l~pGd~v---~ipsgv~Ha~r 192 (217)
T 4b29_A 151 LPEELYSVVSGRALFHLRNA-PDLMLEPGQTR---FHPANAPHAMT 192 (217)
T ss_dssp SSEEEEEEEEECEEEEETTS-CCEEECTTCEE---EECTTCCEEEE
T ss_pred CCceEEEEEeCCEEEEECCC-CEEecCCCCEE---EcCCCCceeEE
Confidence 47799999999999988755 56678998855 23334444443
No 70
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=63.62 E-value=29 Score=23.19 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=23.7
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
....+++|++|.+.+...+. ...+++||++
T Consensus 75 ~~~E~~~Vl~G~~~~~i~~~--~~~l~~Gd~i 104 (167)
T 3ibm_A 75 EHTHVVMVVRGHAEVVLDDR--VEPLTPLDCV 104 (167)
T ss_dssp SSCEEEEEEESEEEEEETTE--EEEECTTCEE
T ss_pred CCcEEEEEEeCEEEEEECCE--EEEECCCCEE
Confidence 36789999999999876543 6678999866
No 71
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=62.96 E-value=20 Score=23.35 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=32.9
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEE
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRV 112 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l 112 (155)
...+++|++|.+.+...+. ....+.+||.+ .+-.+.+........+ ++.++.+
T Consensus 68 ~~E~~~Vl~G~~~~~~~~~-~~~~l~~Gd~i---~ip~~~~H~~~n~~~~-~~~~l~v 120 (147)
T 2f4p_A 68 GGQILIVTRGKGFYQERGK-PARILKKGDVV---EIPPNVVHWHGAAPDE-ELVHIGI 120 (147)
T ss_dssp TCEEEEEEEEEEEEEETTS-CCEEEETTCEE---EECTTCCEEEEEBTTB-CEEEEEE
T ss_pred CceEEEEEeCEEEEEECCE-EEEEECCCCEE---EECCCCcEEeEeCCCC-CEEEEEE
Confidence 4689999999999987655 33578999866 2334555444333333 2444443
No 72
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=62.70 E-value=10 Score=25.89 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=26.1
Q ss_pred cccCCeEEEEEecEEEEEEecC--eeEEEccCCCee
Q psy15589 52 GDEGKSWYIIIQGSVDVVIYGK--GCVTSLYAGEDF 85 (155)
Q Consensus 52 g~~~~~lyii~~G~v~v~~~~~--~~~~~l~~G~~f 85 (155)
....+.+++|++|++.+..... +....+++||.+
T Consensus 58 h~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~ 93 (178)
T 1dgw_A 58 HSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAI 93 (178)
T ss_dssp EESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEE
T ss_pred CCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEE
Confidence 3446799999999999887533 256789999976
No 73
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=61.68 E-value=17 Score=21.35 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=22.1
Q ss_pred CeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 56 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
..++++++|.+.+...+ ....+++||.+
T Consensus 50 ~e~~~v~~G~~~~~~~~--~~~~l~~Gd~~ 77 (105)
T 1v70_A 50 DKVYYALEGEVVVRVGE--EEALLAPGMAA 77 (105)
T ss_dssp EEEEEEEESCEEEEETT--EEEEECTTCEE
T ss_pred cEEEEEEeCEEEEEECC--EEEEeCCCCEE
Confidence 46899999999987653 45678999866
No 74
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=60.55 E-value=15 Score=23.25 Aligned_cols=40 Identities=13% Similarity=0.055 Sum_probs=28.4
Q ss_pred CeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeE
Q psy15589 56 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAAT 99 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~ 99 (155)
..+++|++|.+.+...+. ....+++||.+ -+-.+.+....
T Consensus 65 ~E~~~vl~G~~~~~~~~~-~~~~l~~Gd~~---~ip~g~~H~~~ 104 (134)
T 2o8q_A 65 FQLFYVLRGWVEFEYEDI-GAVMLEAGGSA---FQPPGVRHREL 104 (134)
T ss_dssp CEEEEEEESEEEEEETTT-EEEEEETTCEE---ECCTTCCEEEE
T ss_pred cEEEEEEeCEEEEEECCc-EEEEecCCCEE---EECCCCcEEeE
Confidence 689999999999988763 45678999865 23345554433
No 75
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=60.32 E-value=14 Score=25.53 Aligned_cols=56 Identities=14% Similarity=0.282 Sum_probs=36.4
Q ss_pred ccCCeEEEEEecEEEEEEecCe------eEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcH
Q psy15589 53 DEGKSWYIIIQGSVDVVIYGKG------CVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDK 114 (155)
Q Consensus 53 ~~~~~lyii~~G~v~v~~~~~~------~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~ 114 (155)
++.+.++++++|.+.+...+++ ..-.+++||+| -+-.+.+..... .. .+..+.+.+
T Consensus 52 ~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmf---llP~gvpHsP~r--~~-e~v~lviEr 113 (176)
T 1zvf_A 52 NPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSY---LLPGNVPHSPVR--FA-DTVGIVVEQ 113 (176)
T ss_dssp CSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEE---EECTTCCEEEEE--CT-TCEEEEEEE
T ss_pred CCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEE---EcCCCCCcCCcc--cC-CcEEEEEEe
Confidence 4466899999999999887732 35678999987 344555544332 23 255555543
No 76
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=60.08 E-value=26 Score=21.27 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=33.5
Q ss_pred ccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEE
Q psy15589 53 DEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLR 111 (155)
Q Consensus 53 ~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~ 111 (155)
.+...++++++|.+.+...+ ....+++||.+ -+-.+.+..... .+ ++.++.
T Consensus 56 h~~~e~~~vl~G~~~~~i~~--~~~~l~~Gd~i---~i~~~~~H~~~~--~~-~~~~~~ 106 (114)
T 2ozj_A 56 YFGDTLYLILQGEAVITFDD--QKIDLVPEDVL---MVPAHKIHAIAG--KG-RFKMLQ 106 (114)
T ss_dssp CSSCEEEEEEEEEEEEEETT--EEEEECTTCEE---EECTTCCBEEEE--EE-EEEEEE
T ss_pred CCCCeEEEEEeCEEEEEECC--EEEEecCCCEE---EECCCCcEEEEe--CC-CcEEEE
Confidence 34668999999999987744 45678999965 344455655443 34 355443
No 77
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=59.98 E-value=13 Score=22.82 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=23.5
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
....++++++|.+.+...+. ....+++||.+
T Consensus 46 ~~~e~~~Vl~G~~~~~i~~~-~~~~l~~Gd~i 76 (117)
T 2b8m_A 46 NSYVHLIIIKGEMTLTLEDQ-EPHNYKEGNIV 76 (117)
T ss_dssp SSCEEEEEEESEEEEEETTS-CCEEEETTCEE
T ss_pred CCcEEEEEEeCEEEEEECCE-EEEEeCCCCEE
Confidence 35578899999999987655 33378999865
No 78
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=59.85 E-value=20 Score=23.58 Aligned_cols=30 Identities=7% Similarity=0.083 Sum_probs=23.9
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
....+++|++|.+.+...+. ...+++||++
T Consensus 67 ~~~E~~~Vl~G~~~~~~~~~--~~~l~~Gd~i 96 (162)
T 3l2h_A 67 YEEEAVYVLSGKGTLTMEND--QYPIAPGDFV 96 (162)
T ss_dssp SCCEEEEEEESCEEEEETTE--EEEECTTCEE
T ss_pred CCCEEEEEEEEEEEEEECCE--EEEeCCCCEE
Confidence 45689999999999986543 4678999976
No 79
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=59.63 E-value=8.4 Score=23.09 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=22.8
Q ss_pred eEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 57 SWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 57 ~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
.+++|++|.+.+...+......+.+||.+
T Consensus 41 e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~ 69 (97)
T 2fqp_A 41 VVVPMTTGPLLLETPEGSVTSQLTRGVSY 69 (97)
T ss_dssp EEEESSCEEEEEEETTEEEEEEECTTCCE
T ss_pred EEEEEeecEEEEEeCCCCEEEEEcCCCEE
Confidence 48999999999987653245678999976
No 80
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=59.30 E-value=20 Score=21.43 Aligned_cols=29 Identities=21% Similarity=0.564 Sum_probs=22.9
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
...+++|++|.+.+...+ ....+++||.+
T Consensus 44 ~~e~~~vl~G~~~~~~~~--~~~~l~~Gd~~ 72 (113)
T 2gu9_A 44 ADQWLFVVDGAGEAIVDG--HTQALQAGSLI 72 (113)
T ss_dssp CEEEEEEEECCEEEEETT--EEEEECTTEEE
T ss_pred CcEEEEEEeCEEEEEECC--EEEEeCCCCEE
Confidence 568999999999987753 45678999865
No 81
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=58.96 E-value=21 Score=25.68 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=32.7
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEE
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRV 112 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l 112 (155)
.+.+++|++|++++...+ ....|++||++ .+-.+.+........+ .++++.+
T Consensus 81 ~ee~~~Vl~G~l~~~~~~--~~~~L~~Gd~~---~~~~~~~H~~~N~~~~-~~~~l~v 132 (261)
T 1rc6_A 81 IETFLYVISGNITAKAEG--KTFALSEGGYL---YCPPGSLMTFVNAQAE-DSQIFLY 132 (261)
T ss_dssp EEEEEEEEESEEEEEETT--EEEEEETTEEE---EECTTCCCEEEECSSS-CEEEEEE
T ss_pred ceEEEEEEEeEEEEEECC--EEEEECCCCEE---EECCCCCEEEEeCCCC-CEEEEEE
Confidence 457889999999998744 45678999966 2334445444433333 3555544
No 82
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=58.72 E-value=29 Score=21.38 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=31.4
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEE
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHF 109 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~v 109 (155)
+...++++++|.+++...+. ...+++||.+ -+-.+.+... .+.++ +.+
T Consensus 55 ~~~e~~~Vl~G~~~~~i~~~--~~~l~~Gd~i---~ip~~~~H~~--~~~~~-~~~ 102 (114)
T 3fjs_A 55 AGPSTIQCLEGEVEIGVDGA--QRRLHQGDLL---YLGAGAAHDV--NAITN-TSL 102 (114)
T ss_dssp SSCEEEEEEESCEEEEETTE--EEEECTTEEE---EECTTCCEEE--EESSS-EEE
T ss_pred CCcEEEEEEECEEEEEECCE--EEEECCCCEE---EECCCCcEEE--EeCCC-cEE
Confidence 35689999999999987544 5678999865 3334445443 34453 443
No 83
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=57.95 E-value=27 Score=22.94 Aligned_cols=31 Identities=6% Similarity=0.268 Sum_probs=24.3
Q ss_pred CCeEEEEEecEEEEEEecCe-------eEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKG-------CVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~-------~~~~l~~G~~f 85 (155)
...+++|++|...+...+.+ ....+++||.+
T Consensus 61 ~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i 98 (163)
T 1lr5_A 61 CEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTF 98 (163)
T ss_dssp SCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEE
T ss_pred CCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEE
Confidence 45799999999999887721 46678999865
No 84
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=57.60 E-value=16 Score=22.22 Aligned_cols=50 Identities=18% Similarity=0.293 Sum_probs=32.1
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEE
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRV 112 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l 112 (155)
...++++++|.+.+...+ ....+.+||.+ -+-.+.+... .+.++ +.++.+
T Consensus 54 ~~e~~~vl~G~~~~~~~~--~~~~l~~Gd~~---~ip~~~~H~~--~~~~~-~~~l~v 103 (116)
T 2pfw_A 54 HSQVSYVVEGEFHVNVDG--VIKVLTAGDSF---FVPPHVDHGA--VCPTG-GILIDT 103 (116)
T ss_dssp SEEEEEEEEECEEEEETT--EEEEECTTCEE---EECTTCCEEE--EESSC-EEEEEE
T ss_pred cceEEEEEeeEEEEEECC--EEEEeCCCCEE---EECcCCceee--EeCCC-cEEEEE
Confidence 567899999999988733 46678999865 2333444433 33443 665554
No 85
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=57.58 E-value=20 Score=23.86 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=22.7
Q ss_pred CeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 56 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
+.+++|++|.+.+...+. ...+++||.+
T Consensus 66 eE~~~Vl~G~~~~~~~~~--~~~l~~GD~i 93 (163)
T 3i7d_A 66 DEFVMVTEGALVLVDDQG--EHPMVPGDCA 93 (163)
T ss_dssp CEEEEEEESCEEEEETTE--EEEECTTCEE
T ss_pred cEEEEEEECEEEEEECCE--EEEeCCCCEE
Confidence 589999999999987654 5678999865
No 86
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=57.11 E-value=22 Score=23.03 Aligned_cols=41 Identities=5% Similarity=-0.015 Sum_probs=28.1
Q ss_pred CCeEEEEEecEEEEEEecCe----eEEEccCCCeeehhhhhcCCCcee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAPRAA 98 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~fGe~~ll~~~~~~~ 98 (155)
.+.+++|++|.+.+...+.. ....+.+||.+ -+-.+.+...
T Consensus 64 ~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i---~ip~g~~H~~ 108 (148)
T 2oa2_A 64 LDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAI---LIPAGTWHNV 108 (148)
T ss_dssp CEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEE---EECTTCEEEE
T ss_pred CcEEEEEEeCEEEEEECCccccceeeEEECCCCEE---EECCCCcEEE
Confidence 45899999999999887653 12778999865 3334444433
No 87
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=56.64 E-value=25 Score=22.24 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=21.8
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
...+++|++|.+.+....++....+++||.+
T Consensus 59 ~~e~~~vl~G~~~~~~~~~~~~~~l~~Gd~~ 89 (145)
T 3ht1_A 59 WEHEIYVLEGSMGLVLPDQGRTEEVGPGEAI 89 (145)
T ss_dssp SCEEEEEEEECEEEEEGGGTEEEEECTTCEE
T ss_pred CceEEEEEEeEEEEEEeECCEEEEECCCCEE
Confidence 3455679999999883223356778999965
No 88
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=55.37 E-value=36 Score=24.31 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=33.8
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEE
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRV 112 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l 112 (155)
.+.+++|++|.+++...+. ...|++||++ .+-.+.+...... + .++++.+
T Consensus 68 ~ee~~~Vl~G~~~~~~~~~--~~~l~~Gd~~---~~p~~~~H~~~n~--~-~~~~l~v 117 (246)
T 1sfn_A 68 YQRFAFVLSGEVDVAVGGE--TRTLREYDYV---YLPAGEKHMLTAK--T-DARVSVF 117 (246)
T ss_dssp SEEEEEEEEEEEEEECSSC--EEEECTTEEE---EECTTCCCEEEEE--E-EEEEEEE
T ss_pred eeEEEEEEECEEEEEECCE--EEEECCCCEE---EECCCCCEEEEeC--C-CEEEEEE
Confidence 5678899999999987654 4678999966 3445556554443 4 3655554
No 89
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=55.12 E-value=16 Score=26.45 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=24.3
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
.+.+..|++|.+.+...++ ....+++||.|
T Consensus 186 ~~E~~~ILeG~v~lt~~~G-~~~~~~aGD~~ 215 (238)
T 3myx_A 186 IHELMNLIEGRVVLSLENG-SSLTVNTGDTV 215 (238)
T ss_dssp SCEEEEEEECCEEEEETTS-CEEEECTTCEE
T ss_pred CCEEEEEEEeEEEEEeCCC-CEEEECCCCEE
Confidence 4577888999999998766 55679999966
No 90
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=53.68 E-value=28 Score=21.80 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=22.5
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
...+++|++|.+.+...+. ...+.+||.+
T Consensus 68 ~~e~~~Vl~G~~~~~i~~~--~~~l~~Gd~i 96 (126)
T 1vj2_A 68 WEHEIFVLKGKLTVLKEQG--EETVEEGFYI 96 (126)
T ss_dssp SCEEEEEEESEEEEECSSC--EEEEETTEEE
T ss_pred CcEEEEEEEeEEEEEECCE--EEEECCCCEE
Confidence 5688999999999877654 4567888865
No 91
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=53.60 E-value=47 Score=22.23 Aligned_cols=29 Identities=10% Similarity=0.096 Sum_probs=22.4
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
...+++|++|...+...+ ....+++||++
T Consensus 73 ~~E~~~Vl~G~~~~~v~g--~~~~l~~GD~i 101 (166)
T 3jzv_A 73 HAHGVMILKGRGHAMVGR--AVSAVAPYDLV 101 (166)
T ss_dssp SCEEEEEEEECEEEEETT--EEEEECTTCEE
T ss_pred CcEEEEEEeCEEEEEECC--EEEEeCCCCEE
Confidence 457889999999987644 45678999866
No 92
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=53.11 E-value=21 Score=25.92 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=32.3
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEE
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRV 112 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l 112 (155)
.+.+++|++|++++...+. ...|++||.+ .+-.+.+........+ .++++.+
T Consensus 84 ~ee~~~Vl~G~l~~~~~~~--~~~L~~GD~~---~~~~~~~H~~~N~~~~-~~~~l~v 135 (274)
T 1sef_A 84 IQTLVYVIDGRLRVSDGQE--THELEAGGYA---YFTPEMKMYLANAQEA-DTEVFLY 135 (274)
T ss_dssp EEEEEEEEESEEEEECSSC--EEEEETTEEE---EECTTSCCEEEESSSS-CEEEEEE
T ss_pred ceEEEEEEEeEEEEEECCE--EEEECCCCEE---EECCCCCEEEEeCCCC-CEEEEEE
Confidence 3578899999999987544 5678999966 2333444443333333 3554444
No 93
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=52.01 E-value=25 Score=22.37 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=22.1
Q ss_pred CeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 56 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
..+++|++|.+.+...+ ....+++||.+
T Consensus 79 ~E~~~Vl~G~~~~~i~~--~~~~l~~Gd~i 106 (133)
T 1o4t_A 79 FEIYYILLGEGVFHDNG--KDVPIKAGDVC 106 (133)
T ss_dssp EEEEEEEESEEEEEETT--EEEEEETTEEE
T ss_pred cEEEEEEeCEEEEEECC--EEEEeCCCcEE
Confidence 57899999999987654 45668898865
No 94
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=51.53 E-value=50 Score=22.68 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=24.5
Q ss_pred CCeEEEEEecEEEEEEecC----e--eEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGK----G--CVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~----~--~~~~l~~G~~f 85 (155)
.+.+++|++|.+.+...+. + ....+++||.|
T Consensus 93 ~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~ 129 (201)
T 1fi2_A 93 ATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETF 129 (201)
T ss_dssp CCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEE
T ss_pred CCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEE
Confidence 4689999999999977532 3 27889999976
No 95
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=51.43 E-value=15 Score=25.58 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=30.4
Q ss_pred ccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEE
Q psy15589 49 FHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRV 112 (155)
Q Consensus 49 ~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l 112 (155)
-........+.+|++|... + ....+.+||++=. -.+......+...+ +|.+|..
T Consensus 139 p~H~H~g~E~~~VL~G~f~----d--e~~~~~~Gd~~~~---p~g~~H~p~a~~~~-gc~~l~~ 192 (195)
T 2q1z_B 139 PDHGHRGLELTLVLQGAFR----D--ETDRFGAGDIEIA---DQELEHTPVAERGL-DCICLAA 192 (195)
T ss_dssp CCCCCSSCEEEEEEESEEE----C--SSSEEETTCEEEE---CSSCCCCCEECSSS-CEEEEEE
T ss_pred CCcCCCCeEEEEEEEEEEE----C--CcEEECCCeEEEe---CcCCccCCEeCCCC-CEEEEEE
Confidence 3444456788899999866 2 2245788887622 23333333322244 4777654
No 96
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=51.05 E-value=41 Score=25.48 Aligned_cols=67 Identities=16% Similarity=0.037 Sum_probs=47.4
Q ss_pred ccccccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcH--HHHHHHH
Q psy15589 49 FHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDK--DDFIRIM 121 (155)
Q Consensus 49 ~~~g~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~--~~f~~l~ 121 (155)
-.-..+.+.+++|++|.+++...+. ....+++||.| -+-.|.++...+ .++...+|.+.+ +.+..++
T Consensus 266 ~~h~~~~~~~~~vleG~~~i~i~g~-~~~~l~~Gd~~---~iPag~~h~~~~--~~~~~~~l~~~~g~~g~~~~~ 334 (350)
T 1juh_A 266 PTWSFPGACAFQVQEGRVVVQIGDY-AATELGSGDVA---FIPGGVEFKYYS--EAYFSKVLFVSSGSDGLDQNL 334 (350)
T ss_dssp CCBCCSSCEEEEEEESCEEEEETTS-CCEEECTTCEE---EECTTCCEEEEE--SSSSEEEEEEEESSSSHHHHH
T ss_pred CcccCCCcEEEEEEeeEEEEEECCe-EEEEeCCCCEE---EECCCCCEEEEe--cCCeEEEEEEecCccchhhee
Confidence 3344667889999999999998874 35688999966 555666666554 444577887766 6666653
No 97
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=50.27 E-value=41 Score=23.00 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=24.5
Q ss_pred CeEEEEEecEEEEEEecCe---eEEEccCCCee
Q psy15589 56 KSWYIIIQGSVDVVIYGKG---CVTSLYAGEDF 85 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~---~~~~l~~G~~f 85 (155)
..+++|++|...+...+.. ....+++||.+
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v 129 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEGDAKWISMEPGTVV 129 (190)
T ss_dssp CEEEEEEESCEEEEEECTTCCEEEEEECTTCEE
T ss_pred CEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEE
Confidence 5899999999999887652 35789999965
No 98
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=50.03 E-value=38 Score=22.42 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=22.5
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
...+++|++|.+++...+ ....+++||++
T Consensus 64 ~~E~~~Vl~G~~~v~v~g--~~~~l~~Gd~i 92 (156)
T 3kgz_A 64 HVHAVMIHRGHGQCLVGE--TISDVAQGDLV 92 (156)
T ss_dssp SCEEEEEEEEEEEEEETT--EEEEEETTCEE
T ss_pred CcEEEEEEeCEEEEEECC--EEEEeCCCCEE
Confidence 457889999999998644 45678898865
No 99
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=49.83 E-value=35 Score=22.98 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=22.8
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
...+++|++|.+.+...+ ....+++||.+
T Consensus 126 ~~E~~~Vl~G~~~~~~~~--~~~~l~~GD~i 154 (192)
T 1y9q_A 126 VIEYIHVLEGIMKVFFDE--QWHELQQGEHI 154 (192)
T ss_dssp CEEEEEEEESCEEEEETT--EEEEECTTCEE
T ss_pred CEEEEEEEEeEEEEEECC--EEEEeCCCCEE
Confidence 358899999999987643 45678999966
No 100
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=49.56 E-value=34 Score=21.15 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=20.9
Q ss_pred CeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 56 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
+.+|++++|.+.+...+ ....+++||.+
T Consensus 49 e~~~~vl~G~~~~~i~~--~~~~l~~Gd~i 76 (125)
T 3cew_A 49 EEIYGILSGKGFITIDG--EKIELQAGDWL 76 (125)
T ss_dssp EEEEEEEEEEEEEEETT--EEEEEETTEEE
T ss_pred eEEEEEEeCEEEEEECC--EEEEeCCCCEE
Confidence 35677999999987754 34668898865
No 101
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=49.05 E-value=45 Score=20.58 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=39.9
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecC-cEEEEEEcHHHHHHHHHhh
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTRED-NCHFLRVDKDDFIRIMRDV 124 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~-~~~vl~l~~~~f~~l~~~~ 124 (155)
....++++++|...+...+ ....+++||.+ -+-.+.+........++ ...++.++.+-+..++.+.
T Consensus 53 ~~~Ei~~v~~G~~~~~i~~--~~~~l~~Gd~~---~i~~~~~H~~~~~~~~~~~~~~i~f~~~~~~~~~~~~ 119 (128)
T 4i4a_A 53 NEYELFIVIQGNAIIRIND--EDFPVTKGDLI---IIPLDSEHHVINNNQEDFHFYTIWWDKESTLNFLTRL 119 (128)
T ss_dssp SSEEEEEEEESEEEEEETT--EEEEEETTCEE---EECTTCCEEEEECSSSCEEEEEEEECHHHHHHHHHHH
T ss_pred CCeEEEEEEeCEEEEEECC--EEEEECCCcEE---EECCCCcEEeEeCCCCCEEEEEEEECHHHHHHHHHhc
Confidence 4568999999999988754 35678898865 22334444333222232 1345567777776666543
No 102
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=46.92 E-value=28 Score=25.47 Aligned_cols=29 Identities=14% Similarity=0.409 Sum_probs=23.5
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
.+.+++|++|++.+...+. ...+++||++
T Consensus 90 ~eE~~~Vl~G~l~v~v~g~--~~~L~~GD~i 118 (278)
T 1sq4_A 90 AEAVLFVVEGELSLTLQGQ--VHAMQPGGYA 118 (278)
T ss_dssp EEEEEEEEESCEEEEESSC--EEEECTTEEE
T ss_pred ceEEEEEEeCEEEEEECCE--EEEECCCCEE
Confidence 4678999999999988754 4578999865
No 103
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=46.90 E-value=25 Score=21.73 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=23.0
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
...+++|++|.+.+...+ ....+++||.+
T Consensus 61 ~~e~~~vl~G~~~~~~~~--~~~~l~~Gd~~ 89 (126)
T 4e2g_A 61 HEQAGVMLEGTLELTIGE--ETRVLRPGMAY 89 (126)
T ss_dssp SEEEEEEEEECEEEEETT--EEEEECTTEEE
T ss_pred CceEEEEEEeEEEEEECC--EEEEeCCCCEE
Confidence 468999999999997754 34678999865
No 104
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=46.88 E-value=35 Score=20.62 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=22.7
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
...++++++|.+.+...+ ....+.+||.+
T Consensus 60 ~~e~~~vl~G~~~~~~~~--~~~~l~~Gd~~ 88 (115)
T 1yhf_A 60 GDAMVTILSGLAEITIDQ--ETYRVAEGQTI 88 (115)
T ss_dssp SEEEEEEEESEEEEEETT--EEEEEETTCEE
T ss_pred CcEEEEEEeCEEEEEECC--EEEEECCCCEE
Confidence 568999999999987644 34678999866
No 105
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=45.04 E-value=49 Score=24.81 Aligned_cols=31 Identities=10% Similarity=0.332 Sum_probs=24.8
Q ss_pred CCeEEEEEecEEEEEEecC---eeEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGK---GCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~---~~~~~l~~G~~f 85 (155)
.+.+++|++|.+.+...+. .....+++||.+
T Consensus 73 ~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~ 106 (361)
T 2vqa_A 73 AAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLW 106 (361)
T ss_dssp CCEEEEEEESEEEEEEECTTSCEEEEEEETTEEE
T ss_pred CCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEE
Confidence 6799999999999988542 256789999965
No 106
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=44.32 E-value=36 Score=24.59 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=23.8
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
+.+.+.+|++|.+.+.. .+ ....+++||.+
T Consensus 64 p~dE~~~VleG~~~lt~-~g-~~~~~~~Gd~~ 93 (238)
T 3myx_A 64 PYTEMLVMHRGSVTLTS-GT-DSVTLSTGESA 93 (238)
T ss_dssp SSEEEEEEEESEEEEEE-TT-EEEEEETTCEE
T ss_pred CCcEEEEEEEeEEEEEC-CC-eEEEEcCCCEE
Confidence 45688999999999987 44 55568999865
No 107
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=43.99 E-value=52 Score=23.28 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=33.4
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEc
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVD 113 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~ 113 (155)
+...+++|++|.+.+...+ ....+.+||.+= -+-.+.+........+ +|.++.+.
T Consensus 53 ~~~e~~~Vl~G~~~~~~~~--~~~~l~~Gd~i~--~ip~~~~H~~~n~~~~-~~~~l~i~ 107 (243)
T 3h7j_A 53 KEVQIGMVVSGELMMTVGD--VTRKMTALESAY--IAPPHVPHGARNDTDQ-EVIAIDIK 107 (243)
T ss_dssp SSEEEEEEEESEEEEEETT--EEEEEETTTCEE--EECTTCCEEEEECSSS-CEEEEEEE
T ss_pred CCcEEEEEEEeEEEEEECC--EEEEECCCCEEE--EcCCCCcEeeEeCCCC-cEEEEEEe
Confidence 3568999999999998743 456789998330 0223444443333333 36666554
No 108
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=43.29 E-value=44 Score=25.41 Aligned_cols=62 Identities=11% Similarity=-0.002 Sum_probs=37.8
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHH
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRI 120 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l 120 (155)
....+++|++|+..+...++ ....+++||+| .+-.+.+........+ ++.++.+....+.+.
T Consensus 119 ~~~e~~yVl~G~g~~t~v~g-~~~~l~~GD~~---~iP~g~~H~~~n~~~~-~~~~l~v~d~p~~~~ 180 (354)
T 2d40_A 119 NQSALRFIVEGKGAFTAVDG-ERTPMNEGDFI---LTPQWRWHDHGNPGDE-PVIWLDGLDLPLVNI 180 (354)
T ss_dssp SSCEEEEEEECSSCEEEETT-EEEECCTTCEE---EECTTSCEEEECCSSS-CEEEEEEECHHHHHH
T ss_pred CcceEEEEEEEEEEEEEECC-EEEEEcCCCEE---EECCCCcEEeEeCCCC-CEEEEEEECchhHhh
Confidence 35689999999987744455 56789999977 2333444433322234 466666655444443
No 109
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=42.87 E-value=20 Score=21.46 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=21.4
Q ss_pred CeE-EEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 56 KSW-YIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 56 ~~l-yii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
..+ +++++|.+.+...++ ....+++||.+
T Consensus 55 ~e~~~~vl~G~~~~~~~~~-~~~~l~~Gd~~ 84 (110)
T 2q30_A 55 GELNIVVLEGEGEFVGDGD-AVIPAPRGAVL 84 (110)
T ss_dssp CEEEEEEEESCEEEECGGG-CEEEECTTEEE
T ss_pred ccEEEEEEeCEEEEEeCCC-EEEEECCCCEE
Confidence 355 799999999877532 45668999865
No 110
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=41.95 E-value=17 Score=26.76 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=34.4
Q ss_pred ccCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEc
Q psy15589 53 DEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVD 113 (155)
Q Consensus 53 ~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~ 113 (155)
...+.+.+|++|++++...++ ....+++|+++ -+-.+.+....- .+ .++++.+.
T Consensus 88 h~~EEfiyVleG~l~l~l~~g-~~~~L~~Gds~---y~p~~~~H~~~N--~~-~Ar~l~V~ 141 (266)
T 4e2q_A 88 QDIERLIFVVEGAVTLTNTSS-SSKKLTVDSYA---YLPPNFHHSLDC--VE-SATLVVFE 141 (266)
T ss_dssp TTEEEEEEEEEECEEEEC--C-CCEEECTTEEE---EECTTCCCEEEE--SS-CEEEEEEE
T ss_pred CCCeEEEEEEEEEEEEEECCC-cEEEEcCCCEE---EECCCCCEEEEe--CC-CEEEEEEE
Confidence 346789999999999988733 34578999866 333444544332 35 47777664
No 111
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=41.13 E-value=69 Score=24.26 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=32.7
Q ss_pred CeEEEEEecEEEEEEe--cC-eeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEE
Q psy15589 56 KSWYIIIQGSVDVVIY--GK-GCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRV 112 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~--~~-~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l 112 (155)
..+++|++|.+.+... ++ +....+++||.| .+-.+.+........+ ++.++.+
T Consensus 279 ~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~---~ip~~~~H~~~n~~~~-~~~~l~v 334 (385)
T 1j58_A 279 HEWQYYISGKARMTVFASDGHARTFNYQAGDVG---YVPFAMGHYVENIGDE-PLVFLEI 334 (385)
T ss_dssp CEEEEEEESEEEEEEEEETTEEEEEEEESSCEE---EECTTCBEEEEECSSS-CEEEEEE
T ss_pred CEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEE---EECCCCeEEEEECCCC-CEEEEEE
Confidence 6899999999998875 22 256788999976 2333444433322233 3555554
No 112
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=39.19 E-value=34 Score=26.97 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=26.4
Q ss_pred cccCCeEEEEEecEEEEEEecC--eeEEEccCCCee
Q psy15589 52 GDEGKSWYIIIQGSVDVVIYGK--GCVTSLYAGEDF 85 (155)
Q Consensus 52 g~~~~~lyii~~G~v~v~~~~~--~~~~~l~~G~~f 85 (155)
-...+.+++|++|+..+..... .....+++||++
T Consensus 78 h~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 113 (434)
T 2ea7_A 78 HADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQ 113 (434)
T ss_dssp EESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEE
T ss_pred cCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEE
Confidence 4457799999999999887544 267778899876
No 113
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=38.92 E-value=34 Score=27.09 Aligned_cols=34 Identities=12% Similarity=0.248 Sum_probs=26.1
Q ss_pred cccCCeEEEEEecEEEEEEecCe--eEEEccCCCee
Q psy15589 52 GDEGKSWYIIIQGSVDVVIYGKG--CVTSLYAGEDF 85 (155)
Q Consensus 52 g~~~~~lyii~~G~v~v~~~~~~--~~~~l~~G~~f 85 (155)
-...+.+++|++|+..+...+.+ ....+++||.+
T Consensus 103 h~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 138 (445)
T 2cav_A 103 HSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAI 138 (445)
T ss_dssp EESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEE
T ss_pred CCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEE
Confidence 34577999999999998765332 67788999976
No 114
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=38.43 E-value=1.2e+02 Score=23.52 Aligned_cols=61 Identities=10% Similarity=0.094 Sum_probs=38.0
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEE-ecCcEEEEEEcHHHHHHHH
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVT-REDNCHFLRVDKDDFIRIM 121 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a-~~~~~~vl~l~~~~f~~l~ 121 (155)
.+.+|+|++|+..+.. ++ ....+++||+|=. -.+......... .+ ++.++.+.-..+.+.+
T Consensus 314 ~~~v~~VleG~G~~~V-~g-e~~~~~~GD~~~i---P~g~~H~~~N~g~~e-~~~ll~i~D~Pl~~~L 375 (394)
T 3bu7_A 314 GNVIYNVAKGQGYSIV-GG-KRFDWSEHDIFCV---PAWTWHEHCNTQERD-DACLFSFNDFPVMEKL 375 (394)
T ss_dssp SCEEEEEEECCEEEEE-TT-EEEEECTTCEEEE---CTTCCEEEEECCSSC-CEEEEEEESHHHHHHT
T ss_pred CcEEEEEEeCeEEEEE-CC-EEEEEeCCCEEEE---CCCCeEEeEeCCCCC-CeEEEEeeCHHHHHHh
Confidence 5579999999985554 33 5677899997732 223333222211 34 4888888766666544
No 115
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=38.07 E-value=55 Score=24.06 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=35.8
Q ss_pred CCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHHHH
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMR 122 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l~~ 122 (155)
...+++|++|.+.+...+ ....+++||.| .+-.+.+........ +...++.+....|.++++
T Consensus 239 ~~e~~~vl~G~~~~~i~~--~~~~l~~GD~~---~ip~~~~H~~~n~~~-~~~~l~v~~~~~~~~~~~ 300 (337)
T 1y3t_A 239 HTETFYCLEGQMTMWTDG--QEIQLNPGDFL---HVPANTVHSYRLDSH-YTKMVGVLVPGLFEPFFR 300 (337)
T ss_dssp CEEEEEEEESCEEEEETT--EEEEECTTCEE---EECTTCCEEEEECSS-SEEEEEEEESSTTTHHHH
T ss_pred CcEEEEEEeCEEEEEECC--EEEEECCCCEE---EECCCCeEEEEECCC-CeEEEEEEcCccHHHHHH
Confidence 468899999999987744 45678999966 233344443332221 223334444444544433
No 116
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=37.78 E-value=45 Score=24.87 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=37.3
Q ss_pred cccCCeEEEEEecEEEEEEecCe--eEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcH
Q psy15589 52 GDEGKSWYIIIQGSVDVVIYGKG--CVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDK 114 (155)
Q Consensus 52 g~~~~~lyii~~G~v~v~~~~~~--~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~ 114 (155)
-+..+.++++++|.+.+...+++ .--.+++|++| -+-.+.+..-.+ .. +|..+.+.+
T Consensus 48 ~~~~dE~FyqlkG~m~l~~~d~g~~~~V~i~eGemf---llP~gv~HsP~r--~~-et~gLviE~ 106 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIF---LLPARVPHSPQR--FA-NTVGLVVER 106 (286)
T ss_dssp ECSSCEEEEEEESCEEEEEEETTEEEEEEECTTEEE---EECTTCCEEEEE--CT-TCEEEEEEE
T ss_pred CCCCCeEEEEEeCeEEEEEEeCCceeeEEECCCeEE---EeCCCCCcCCcc--cC-CeEEEEEee
Confidence 45577999999999999887743 34567898877 333444443332 34 366666654
No 117
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=37.15 E-value=51 Score=26.87 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=25.8
Q ss_pred CCeEEEEEecEEEEEEecCe----eEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~f 85 (155)
++.+.+|++|.+.+...+.+ ....+++||+|
T Consensus 415 A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~ 449 (531)
T 3fz3_A 415 AHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLF 449 (531)
T ss_dssp CCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEE
Confidence 67899999999999887653 46789999977
No 118
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=37.15 E-value=39 Score=26.55 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=28.9
Q ss_pred ccccccCCeEEEEEecEEEEEEecCe--eEEEccCCCee
Q psy15589 49 FHQGDEGKSWYIIIQGSVDVVIYGKG--CVTSLYAGEDF 85 (155)
Q Consensus 49 ~~~g~~~~~lyii~~G~v~v~~~~~~--~~~~l~~G~~f 85 (155)
...-..++.+++|++|...+...+.+ ....+++||.|
T Consensus 58 ~Phh~~A~ei~yV~~G~g~~g~V~~~~~~~~~l~~GDv~ 96 (418)
T 3s7i_A 58 LPKHADADNILVIQQGQATVTVANGNNRKSFNLDEGHAL 96 (418)
T ss_dssp EEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEE
T ss_pred eeeeCCCCeEEEEEEeeEEEEEEecCCEEEEEecCCCEE
Confidence 33345688999999999988776554 67888999977
No 119
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=36.51 E-value=48 Score=24.85 Aligned_cols=30 Identities=20% Similarity=0.543 Sum_probs=23.8
Q ss_pred CeEEEEEecEEEEEEec--Ce-eEEEccCCCee
Q psy15589 56 KSWYIIIQGSVDVVIYG--KG-CVTSLYAGEDF 85 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~--~~-~~~~l~~G~~f 85 (155)
..+++|++|.+.+...+ +. ....+++||.|
T Consensus 256 ~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~ 288 (361)
T 2vqa_A 256 DEWQYVLDGEMDLTVFASEGKASVSRLQQGDVG 288 (361)
T ss_dssp CEEEEEEESCEEEEEECSTTCEEEEEECTTCEE
T ss_pred CEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEE
Confidence 78999999999998743 21 37789999976
No 120
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=35.12 E-value=40 Score=26.36 Aligned_cols=34 Identities=9% Similarity=0.152 Sum_probs=26.2
Q ss_pred cccCCeEEEEEecEEEEEEecC--eeEEEccCCCee
Q psy15589 52 GDEGKSWYIIIQGSVDVVIYGK--GCVTSLYAGEDF 85 (155)
Q Consensus 52 g~~~~~lyii~~G~v~v~~~~~--~~~~~l~~G~~f 85 (155)
-...+.+++|++|+..+...+. .....+++||.+
T Consensus 66 h~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 101 (416)
T 1uij_A 66 HADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQ 101 (416)
T ss_dssp EESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEE
T ss_pred cCCCceEEEEEeeEEEEEEEECCCCeEEEecCCCEE
Confidence 4457799999999999876433 266788999976
No 121
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=33.11 E-value=65 Score=25.76 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=24.4
Q ss_pred CCeEEEEEecEEEEEEecCe----eEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~f 85 (155)
.+.+++|++|...+...+.+ ....+++||+|
T Consensus 359 a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 359 ANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL 393 (476)
T ss_dssp CCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEE
Confidence 57899999999999886643 24568999976
No 122
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=32.95 E-value=57 Score=24.73 Aligned_cols=42 Identities=21% Similarity=0.430 Sum_probs=29.3
Q ss_pred CCeEEEEEecEEEEEEecC-e--eEEEccCCCeeehhhhhcCCCceeE
Q psy15589 55 GKSWYIIIQGSVDVVIYGK-G--CVTSLYAGEDFGKLALVNNAPRAAT 99 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~-~--~~~~l~~G~~fGe~~ll~~~~~~~~ 99 (155)
...+++|++|.+++...+. + ....+++||++ .+-.+.+....
T Consensus 99 ~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~---~ip~g~~H~~~ 143 (385)
T 1j58_A 99 EAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLW---YFPSGLPHSIQ 143 (385)
T ss_dssp SCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEE---EECTTCCEEEE
T ss_pred hheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEE---EECCCCeEEEE
Confidence 6788999999999988653 2 35689999965 33345554433
No 123
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=32.36 E-value=32 Score=19.95 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=26.2
Q ss_pred hhhhhhHHHHHHHhhcCHHHHHHhhcchhhHHHHhh
Q psy15589 12 LLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMT 47 (155)
Q Consensus 12 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (155)
++..||.++++++ ..+++..+....++..+++
T Consensus 8 wL~~LP~~Lq~kV----~aIV~~~PsSl~VF~~Ly~ 39 (70)
T 2lh0_A 8 FLDELPESLSRKI----GTVVRVLPSSLEIFEELYK 39 (70)
T ss_dssp GGGGSCHHHHHHH----HHHHTTCTTHHHHHHHHHH
T ss_pred HHHhCCHHHHHHH----HHHHHhCccHHHHHHHHHH
Confidence 7899999999995 2577888888888777765
No 124
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=32.15 E-value=68 Score=25.94 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=24.4
Q ss_pred CCeEEEEEecEEEEEEecCe----eEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~f 85 (155)
.+.+++|++|.+.+...+.+ ....+++||+|
T Consensus 393 a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 393 AHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp CCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 57899999999999876643 23568999976
No 125
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=31.98 E-value=65 Score=24.34 Aligned_cols=31 Identities=13% Similarity=0.013 Sum_probs=24.5
Q ss_pred CCeEEEEEecEEEEEEecC-e--eEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGK-G--CVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~-~--~~~~l~~G~~f 85 (155)
...+++|++|.+.+...+. + ....+++||++
T Consensus 71 ~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v 104 (350)
T 1juh_A 71 HYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYG 104 (350)
T ss_dssp CEEEEEEEESEEEEEEEETTSCCEEEEEETTCEE
T ss_pred ceEEEEEEEEEEEEEECCcCCceEEEEECCCCEE
Confidence 4578889999999988762 1 56789999965
No 126
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=31.76 E-value=70 Score=25.43 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=25.2
Q ss_pred cCCeEEEEEecEEEEEEecCe---e-EEEccCCCee
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKG---C-VTSLYAGEDF 85 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~---~-~~~l~~G~~f 85 (155)
.++.+++|++|...+...+.+ . -..+.+||.|
T Consensus 342 ~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~ 377 (459)
T 2e9q_A 342 NSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVL 377 (459)
T ss_dssp SCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEE
Confidence 367899999999999887643 2 3569999977
No 127
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=31.68 E-value=70 Score=25.71 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=24.6
Q ss_pred CCeEEEEEecEEEEEEecCe---e-EEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKG---C-VTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~---~-~~~l~~G~~f 85 (155)
.+.+++|++|.+.+...+.+ . ...+++||+|
T Consensus 388 a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~ 422 (493)
T 2d5f_A 388 ANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLL 422 (493)
T ss_dssp CCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEE
Confidence 57899999999999877653 2 2569999977
No 128
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=30.77 E-value=47 Score=25.90 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=22.7
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
..+.+|+|++|+-.....++ ....+++||+|
T Consensus 142 ~~~ev~~IleG~G~~t~v~G-~~~~~~~GD~i 172 (394)
T 3bu7_A 142 AASALRFIMEGSGAYTIVDG-HKVELGANDFV 172 (394)
T ss_dssp SSCEEEEEEECSCEEEEETT-EEEEECTTCEE
T ss_pred CcceEEEEEEeeEEEEEECC-EEEEEcCCCEE
Confidence 34579999999876545555 56678888866
No 129
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=30.75 E-value=1.3e+02 Score=20.76 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=28.1
Q ss_pred CCeEEEEEecEEEEEEecC-e-e-EEEccCCCeeehhhhhcCCCce
Q psy15589 55 GKSWYIIIQGSVDVVIYGK-G-C-VTSLYAGEDFGKLALVNNAPRA 97 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~-~-~-~~~l~~G~~fGe~~ll~~~~~~ 97 (155)
.+.+++|++|.......+. + . ...+++||++ .+-.|.+..
T Consensus 104 ~~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlI---iIPaG~~H~ 146 (191)
T 1vr3_A 104 DEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMI---TLPAGIYHR 146 (191)
T ss_dssp SCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEE---EECTTCCEE
T ss_pred cceEEEEEeceEEEEECCCCCeEEEEEECCCCEE---EECcCCcCC
Confidence 4689999999999988875 2 2 3578999876 333444443
No 130
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=29.89 E-value=93 Score=23.16 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=34.4
Q ss_pred CeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcH
Q psy15589 56 KSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDK 114 (155)
Q Consensus 56 ~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~ 114 (155)
+.+++++.|...|...+ ....|++||. ++--.....+..+.++ |.++.+..
T Consensus 227 d~wiWqLEGss~Vt~~~--q~~~L~~~Ds-----LLIpa~~~y~~~r~~g-sv~L~I~~ 277 (286)
T 2qnk_A 227 DVWLWQLEGSSVVTMGG--RRLSLAPDDS-----LLVLAGTSYAWERTQG-SVALSVTQ 277 (286)
T ss_dssp CEEEEEEESCEEEEETT--EEEEECTTEE-----EEECTTCCEEEEECTT-CEEEEEEE
T ss_pred cEEEEEEcCceEEEECC--eEEeccCCCE-----EEecCCCeEEEEecCC-eEEEEEEE
Confidence 89999999999755444 4556788773 3333334566777774 88888753
No 131
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=29.81 E-value=1.8e+02 Score=21.95 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=38.8
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCeeehhhhhcCCCceeEEEEecCcEEEEEEcHHHHHHH
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRI 120 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~~vl~l~~~~f~~l 120 (155)
....+|+|++|...+... + ....+++||.|= +-.+..... .+.+ ++.++.+.-..+.+-
T Consensus 287 ~~~ev~~v~~G~g~~~v~-~-~~~~~~~GD~~~---vP~~~~H~~--~n~e-~~~l~~~~d~p~~~~ 345 (354)
T 2d40_A 287 TDSTIYHVVEGSGQVIIG-N-ETFSFSAKDIFV---VPTWHGVSF--QTTQ-DSVLFSFSDRPVQEA 345 (354)
T ss_dssp SSCEEEEEEEEEEEEEET-T-EEEEEETTCEEE---ECTTCCEEE--EEEE-EEEEEEEESHHHHHH
T ss_pred CCcEEEEEEeCeEEEEEC-C-EEEEEcCCCEEE---ECCCCeEEE--EeCC-CEEEEEEcCHHHHHH
Confidence 345899999999998873 2 667889999763 223333322 2346 488888866655543
No 132
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22
Probab=28.59 E-value=81 Score=19.34 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=24.8
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCeee
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 86 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fG 86 (155)
......=|++|..++...+.+.-..+.+|+.|-
T Consensus 40 ~~~E~M~vvsG~~~V~lpg~~ew~~~~aGesF~ 72 (94)
T 2oyz_A 40 QAPERMTVVKGALVVKRVGEADWTTYSSGESFD 72 (94)
T ss_dssp SSCEEEEEEESEEEEEETTCSSCEEEETTCEEE
T ss_pred CCeEEEEEEEeEEEEEcCCCCcCEEECCCCEEE
Confidence 345666788999998888776667778888773
No 133
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=27.96 E-value=91 Score=24.91 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=25.5
Q ss_pred cCCeEEEEEecEEEEEEecCe----eEEEccCCCee
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDF 85 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~f 85 (155)
.++.+.++++|.+.+...+.+ ....+++||.|
T Consensus 343 ~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~ 378 (466)
T 3kgl_A 343 NANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLL 378 (466)
T ss_dssp SCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEE
Confidence 367899999999999887653 45678999976
No 134
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=26.71 E-value=97 Score=24.95 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=25.2
Q ss_pred cCCeEEEEEecEEEEEEecCe---e-EEEccCCCee
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKG---C-VTSLYAGEDF 85 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~---~-~~~l~~G~~f 85 (155)
.++.+.+|++|.+.+...+.+ . -..+.+||.|
T Consensus 378 ~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~ 413 (496)
T 3ksc_A 378 NANSIIYALKGRARLQVVNCNGNTVFDGELEAGRAL 413 (496)
T ss_dssp SCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEE
Confidence 467899999999999887653 3 3579999976
No 135
>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0
Probab=26.59 E-value=96 Score=19.62 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=26.3
Q ss_pred cCCeEEEEEecEEEEEEecCeeEEEccCCCeee
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG 86 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~fG 86 (155)
......-|++|..++...+.+.-..+.+|+.|-
T Consensus 56 ~~~E~MevvsG~l~V~Lpg~~eW~~~~aGesF~ 88 (111)
T 3hqx_A 56 HVPERMEIISGECRVKIADSTESELFRAGQSFY 88 (111)
T ss_dssp SSCEEEEEEESEEEEEETTCSSCEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEcCCcccCEEeCCCCEEE
Confidence 455677889999999998877677788888873
No 136
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=25.73 E-value=53 Score=22.10 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=22.4
Q ss_pred CCeEEEEEe--cEEEEEEecCeeEEEccCCCee
Q psy15589 55 GKSWYIIIQ--GSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~--G~v~v~~~~~~~~~~l~~G~~f 85 (155)
...+|+|++ |...+...++ ...+++||.+
T Consensus 66 ~~E~~yVLe~~G~g~v~idge--~~~l~~GD~v 96 (157)
T 4h7l_A 66 HQEIYVVLDHAAHATIELNGQ--SYPLTKLLAI 96 (157)
T ss_dssp CEEEEEEEEECTTCEEEETTE--EEECCTTEEE
T ss_pred CcEEEEEEecCcEEEEEECCE--EEEeCCCCEE
Confidence 457999999 9999887543 5678898865
No 137
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=24.19 E-value=87 Score=24.37 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=24.9
Q ss_pred cCCeEEEEEecEEEEEEecC--------e--eEEEccCCCee
Q psy15589 54 EGKSWYIIIQGSVDVVIYGK--------G--CVTSLYAGEDF 85 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~--------~--~~~~l~~G~~f 85 (155)
.++.+++|++|...+...+. + ....+.+||.|
T Consensus 259 ~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~ 300 (397)
T 2phl_A 259 KAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVF 300 (397)
T ss_dssp SCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEE
T ss_pred CCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEE
Confidence 36789999999988876543 2 57789999977
No 138
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=23.94 E-value=1.2e+02 Score=24.23 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=24.9
Q ss_pred cCCeEEEEEecEEEEEEecCe----eEEEccCCCee
Q psy15589 54 EGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDF 85 (155)
Q Consensus 54 ~~~~lyii~~G~v~v~~~~~~----~~~~l~~G~~f 85 (155)
.++.+.++++|.+.+...+.+ .-..+.+||.|
T Consensus 343 ~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVf 378 (465)
T 3qac_A 343 NAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLV 378 (465)
T ss_dssp SCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEE
Confidence 367888999999999877653 34568999977
No 139
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=23.72 E-value=1.5e+02 Score=23.48 Aligned_cols=34 Identities=15% Similarity=0.037 Sum_probs=25.6
Q ss_pred cccCCeEEEEEecEEEEEEecCe------------------------eEEEccCCCee
Q psy15589 52 GDEGKSWYIIIQGSVDVVIYGKG------------------------CVTSLYAGEDF 85 (155)
Q Consensus 52 g~~~~~lyii~~G~v~v~~~~~~------------------------~~~~l~~G~~f 85 (155)
-..++.+++|++|+..+.....+ .+..+++||+|
T Consensus 80 ~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~l~~GDv~ 137 (459)
T 2e9q_A 80 FSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDLL 137 (459)
T ss_dssp EESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEECCCEEEETTEEE
T ss_pred ecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccceeEEecCCCEE
Confidence 34578999999999998765321 25689999987
No 140
>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}
Probab=23.56 E-value=1.1e+02 Score=19.22 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=23.7
Q ss_pred ccCCeEEEEEecEEEEEEecCeeEEEccCCCee
Q psy15589 53 DEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDF 85 (155)
Q Consensus 53 ~~~~~lyii~~G~v~v~~~~~~~~~~l~~G~~f 85 (155)
.......-|++|..++...+.+.-..+.+|+.|
T Consensus 52 T~~~E~MevvsG~l~V~LpG~~eW~~~~aGesF 84 (106)
T 3eo6_A 52 SEVAETIRVLSGMAYYHAEGANDVQELHAGDSM 84 (106)
T ss_dssp CSSCEEEEEEEEEEEEECTTCSSCEEEETTCEE
T ss_pred CCCcEEEEEEEeEEEEECCCCccCEEECCCCEE
Confidence 334556678888888888776666677888877
No 141
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=23.36 E-value=18 Score=21.98 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=21.1
Q ss_pred CCeEEEEEecEEEEEEecCe-eEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVIYGKG-CVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~-~~~~l~~G~~f 85 (155)
....|++.+|.+.+...++. ....+.+|+.+
T Consensus 38 ~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~ 69 (98)
T 3lag_A 38 DYVVVPMADGEMTIVAPDGTRSLAQLKTGRSY 69 (98)
T ss_dssp CEEEEESSCBC-CEECTTSCEECCCBCTTCCE
T ss_pred cEEEEEEeccEEEEEeCCCceEEEEecCCcEE
Confidence 44677888999998876654 34557888754
No 142
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=22.86 E-value=1.5e+02 Score=21.73 Aligned_cols=57 Identities=9% Similarity=0.081 Sum_probs=35.0
Q ss_pred CCeEEEEEecEEEEEEecCeeEEE-ccCCCeeehh---hhhcCCCceeEEEEecCcEEEEEEc
Q psy15589 55 GKSWYIIIQGSVDVVIYGKGCVTS-LYAGEDFGKL---ALVNNAPRAATIVTREDNCHFLRVD 113 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~~~~~~~~~-l~~G~~fGe~---~ll~~~~~~~~~~a~~~~~~vl~l~ 113 (155)
-+...+++.|.+.+...+. .... -+.-+.|.+. ++--.....+++.|.++ ++++...
T Consensus 49 ~E~~iv~l~G~~~V~~~g~-~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~-~~~~v~s 109 (270)
T 2qjv_A 49 RERCLVLVAGLASVXAADS-FFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETD-LELAVCS 109 (270)
T ss_dssp EEEEEEEEESCEEEEETTE-EEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSS-EEEEEEE
T ss_pred cEEEEEEecceEEEEECCE-EEeccccccccccCCCCcEEEECCCCEEEEEecCC-ceEEEEe
Confidence 5677888999999887665 3322 2445555543 32333333677888874 8776643
No 143
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=22.46 E-value=39 Score=22.02 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=23.3
Q ss_pred ccccccCCeEEEEEecEEEEEEecCeeE--EEccCCCeeeh
Q psy15589 49 FHQGDEGKSWYIIIQGSVDVVIYGKGCV--TSLYAGEDFGK 87 (155)
Q Consensus 49 ~~~g~~~~~lyii~~G~v~v~~~~~~~~--~~l~~G~~fGe 87 (155)
-.........++|++|..... .++.. ..+++|+++=.
T Consensus 58 p~H~H~~~ee~~VL~G~~~~~--~g~~~~~~~~~~Gd~~~~ 96 (145)
T 2o1q_A 58 AAHVHVGPGEYFLTKGKMDVR--GGKAAGGDTAIAPGYGYE 96 (145)
T ss_dssp CCEEESSCEEEEEEEEEEEET--TCGGGTSEEEESSEEEEE
T ss_pred CccCCCCCEEEEEEEeEEEEc--CCCEecceEeCCCEEEEE
Confidence 444444567789999999842 22233 56778887643
No 144
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=21.16 E-value=47 Score=23.87 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=23.4
Q ss_pred CCeEEEEEecEEEEEE--------ecC--------e--eEEEccCCCee
Q psy15589 55 GKSWYIIIQGSVDVVI--------YGK--------G--CVTSLYAGEDF 85 (155)
Q Consensus 55 ~~~lyii~~G~v~v~~--------~~~--------~--~~~~l~~G~~f 85 (155)
.+.+++|++|.+.+.. .+. + ....+++||++
T Consensus 64 ~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i 112 (239)
T 2xlg_A 64 INEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLI 112 (239)
T ss_dssp EEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEE
T ss_pred ccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEE
Confidence 4678999999999987 332 0 17789999965
Done!