RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15589
(155 letters)
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2,
CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus
musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Length = 469
Score = 143 bits (360), Expect = 2e-41
Identities = 74/97 (76%), Positives = 89/97 (91%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
+F+QG+EG SWYII++GSV+VVIYGKG V +L+ G+DFGKLALVN+APRAA+IV REDN
Sbjct: 371 VLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDN 430
Query: 107 CHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLER 143
CHFLRVDK+DF RI+RDVEANTVRLKEH +DVLVLE+
Sbjct: 431 CHFLRVDKEDFNRILRDVEANTVRLKEHDQDVLVLEK 467
Score = 75.7 bits (185), Expect = 5e-17
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKG------CVTSLYAGEDFGKLALVNNAPRAATI 100
T+F QGD G +WY ++ GS+DV + + +L G FG+ ++++N PR ATI
Sbjct: 75 TLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATI 133
Query: 101 VTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134
VTRE LR++++DF + L
Sbjct: 134 VTRES-SELLRIEQEDFKALWEKYRQYMAGLLAP 166
Score = 27.2 bits (59), Expect = 2.5
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 1 MARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMF 49
+ RAG +LR +L+ +RDRK R+C G+ELVDW++
Sbjct: 191 ILRAGKILRIAILSRAPHMIRDRKYHLK--TYRQCCVGTELVDWMIQQT 237
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4,
CAMP, SP-camps, GEF, gunanine nucleotide exchange
factor, G-protein, GTP-binding, nucleotide-binding; HET:
SP1; 2.20A {Mus musculus}
Length = 694
Score = 144 bits (365), Expect = 2e-41
Identities = 74/106 (69%), Positives = 92/106 (86%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
+F+QG+EG SWYII++GSV+VVIYGKG V +L+ G+DFGKLALVN+APRAA+IV REDN
Sbjct: 66 VLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDN 125
Query: 107 CHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLERMVNCSSHQH 152
CHFLRVDK+DF RI+RDVEANTVRLKEH +DVLVLE++ + +
Sbjct: 126 CHFLRVDKEDFNRILRDVEANTVRLKEHDQDVLVLEKVPAGNRAAN 171
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 141 bits (357), Expect = 5e-40
Identities = 74/106 (69%), Positives = 92/106 (86%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
+F+QG+EG SWYII++GSV+VVIYGKG V +L+ G+DFGKLALVN+APRAA+IV REDN
Sbjct: 371 VLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDN 430
Query: 107 CHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLERMVNCSSHQH 152
CHFLRVDK+DF RI+RDVEANTVRLKEH +DVLVLE++ + +
Sbjct: 431 CHFLRVDKEDFNRILRDVEANTVRLKEHDQDVLVLEKVPAGNRAAN 476
Score = 108 bits (270), Expect = 2e-28
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 40 ELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYGK------GCVTSLYAGEDFGKLALVNN 93
E ++ +T+F QGD G +WY ++ GS+DV + + +L G FG+ ++++N
Sbjct: 68 ENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDN 126
Query: 94 APRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLER 143
PR ATIVTRE LR++++DF + L V+
Sbjct: 127 TPRHATIVTRES-SELLRIEQEDFKALWEKYRQYMAGLLAPPYGVMETGS 175
Score = 46.8 bits (110), Expect = 7e-07
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 1 MARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMT 47
+ RAG +LR +L+ +RDRK R+C G+ELVDW++
Sbjct: 191 ILRAGKILRIAILSRAPHMIRDRKYHLKTY--RQCCVGTELVDWMIQ 235
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ
domain containing guanine nucleotide exchange factor 2,
PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Length = 134
Score = 117 bits (294), Expect = 8e-35
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
+ G E SWY+I+ G+V++ G V +L+ G FG ++ + T+ D+
Sbjct: 50 IILEDGQELDSWYVILNGTVEISH-PDGKVENLFMGNSFGITPTLDKQYMHGIVRTKVDD 108
Query: 107 CHFLRVDKDDFIRIMRDVEAN 127
C F+ + + D+ RI+ VE +
Sbjct: 109 CQFVCIAQQDYWRILNHVEKS 129
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit,
CAMP-dependent protein kinase catalytic subunit alpha;
PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus
norvegicus} PDB: 3idc_B*
Length = 161
Score = 97.0 bits (242), Expect = 2e-26
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAPRAATIVTR 103
+ QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+ N PRAATI
Sbjct: 71 HVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITAT 130
Query: 104 EDNCHFLRVDKDDFIRIMRDVEANTVRLKE 133
+D+ F RI+ A ++ E
Sbjct: 131 SP-GALWGLDRVTFRRIIVKNNAKKRKMYE 159
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit;
beta-barrel, CAMP-binding, catalytic subunit,
transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B*
3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Length = 154
Score = 92.4 bits (230), Expect = 7e-25
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
T+ QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ PRAAT+ + +
Sbjct: 71 TVIQQGDEGDNFYVIDQGEMDVYVNNEW-ATSVGEGGSFGELALIYGTPRAATVKAKTN- 128
Query: 107 CHFLRVDKDDFIRIMRD 123
+D+D + RI+
Sbjct: 129 VKLWGIDRDSYRRILMG 145
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase;
HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Length = 139
Score = 86.2 bits (214), Expect = 1e-22
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
+ +GD G Y++ G V+V G + ++ G+ FG+LA++ N R AT+ T +
Sbjct: 56 CIIKEGDVGSLVYVMEDGKVEVTKEGV-KLCTMGPGKVFGELAILYNCTRTATVKTLVN- 113
Query: 107 CHFLRVDKDDFIRIMRDVEANTVRLKEH 134
+D+ F IM ++ E+
Sbjct: 114 VKLWAIDRQCFQTIMM--RTGLIKHTEY 139
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide
binding domain, evolution, PKA signaling, transfer; HET:
CMP; 2.21A {Saccharomyces cerevisiae}
Length = 246
Score = 81.4 bits (201), Expect = 1e-19
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
T+ +GD+G+++Y+I G+VDV G+G + L + FG++AL+N+ PR AT+ +
Sbjct: 158 TIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLPRQATVTATKR- 216
Query: 107 CHFLRVDKDDFIRIMRDVE 125
+ K F R++
Sbjct: 217 TKVATLGKSGFQRLLGPAV 235
Score = 74.1 bits (182), Expect = 6e-17
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
T+ QGD+G +Y++ +G+VD + V S G FG+LAL+ N+PRAAT+V D
Sbjct: 40 TIIKQGDQGDYFYVVEKGTVDFYVNDN-KVNSSGPGSSFGELALMYNSPRAATVVATSD- 97
Query: 107 CHFLRVDKDDFIRIMRDVEANTVRLKEH 134
C +D+ F +I+ + +
Sbjct: 98 CLLWALDRLTFRKILLGSSFKKRLMYDD 125
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG
potassium channel; dimer helical bundle beta barrel core
with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium
loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A*
1u12_A 3co2_A
Length = 138
Score = 73.5 bits (181), Expect = 9e-18
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCH 108
G+ G + +++GSV V L G FG++AL++ PR+AT+
Sbjct: 46 CRIGEPGDRMFFVVEGSVSVA---TPNPVELGPGAFFGEMALISGEPRSATVSAATT-VS 101
Query: 109 FLRVDKDDFIRIMRDVEANTVRLKE 133
L + DF + ++
Sbjct: 102 LLSLHSADFQMLCSSSPEIAEIFRK 126
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB
tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A
{Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Length = 416
Score = 75.5 bits (185), Expect = 5e-17
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAPRAATIVTR 103
+ QGD+G ++Y+I +G+ D+ + G CV + FG+LAL+ N P+AATI
Sbjct: 178 HVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPKAATITAT 237
Query: 104 EDNCHFLRVDKDDFIRIMRD 123
+D+ F RI+
Sbjct: 238 SP-GALWGLDRVTFRRIIVK 256
Score = 75.5 bits (185), Expect = 6e-17
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGC----------VTSLYAGEDFGKLALVNNAPR 96
+ QGD S++I+ G V + + KG + + G+ FG+LALV N PR
Sbjct: 300 QIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKPR 359
Query: 97 AATIVTREDNCHFLRVDKDDFIRIMRDVE 125
AA+ L +D F R++
Sbjct: 360 AASAHAIGT-VKCLAMDVQAFERLLGPCM 387
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains,
cyclic nucleotide protein transferase, PKG; HET: CMP;
2.50A {Bos taurus}
Length = 299
Score = 74.2 bits (182), Expect = 1e-16
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKG-----CVTSLYAGEDFGKLALVNNAPRAATIV 101
+ QG G +++II +G V+V + +L G+ FG+ AL R A ++
Sbjct: 190 YIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVI 249
Query: 102 TREDNCHFLRVDKDDFIRIMRDVE 125
E L +D+D F ++ ++
Sbjct: 250 AAEA-VTCLVIDRDSFKHLIGGLD 272
Score = 72.3 bits (177), Expect = 4e-16
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
+ +GD G Y++ G V+V G + ++ G+ FG+LA++ N R AT+ T +
Sbjct: 72 CIIKEGDVGSLVYVMEDGKVEVTKEGV-KLCTMGPGKVFGELAILYNCTRTATVKTLVN- 129
Query: 107 CHFLRVDKDDFIRIMRD 123
+D+ F IM
Sbjct: 130 VKLWAIDRQCFQTIMMR 146
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit,
CAMP-dependent protein kinase catalytic subunit A;
isoform diversity; HET: TPO SEP ATP; 3.70A {Homo
sapiens}
Length = 381
Score = 74.4 bits (182), Expect = 2e-16
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKG-----CVTSLYAGEDFGKLALVNNAPRAATIV 101
+ QG+ G +YII +G+ V+ V L + FG++AL+ N PRAAT+V
Sbjct: 281 KIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVV 340
Query: 102 TREDNCHFLRVDKDDFIRIMRDVE 125
R +++D+ F R++
Sbjct: 341 ARGP-LKCVKLDRPRFERVLGPCS 363
Score = 73.6 bits (180), Expect = 3e-16
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
T+ QG+EG ++Y++ QG VDV + G+ VT++ G FG+LAL+ PRAAT+ + D
Sbjct: 163 TVIQQGNEGDNFYVVDQGEVDVYVNGE-WVTNISEGGSFGELALIYGTPRAATVKAKTD- 220
Query: 107 CHFLRVDKDDFIRIMRDVEANTVRLKEH 134
+D+D + RI+ ++ E
Sbjct: 221 LKLWGIDRDSYRRILMGSTLRKRKMYEE 248
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide
binding protein, structural genomics; HET: MSE CMP;
1.79A {Methylobacillus flagellatus KT}
Length = 187
Score = 70.2 bits (172), Expect = 5e-16
Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAPRAATIVT 102
+ +GD G +I+ G V+V+ + + AG G++++++ PR+A+ V
Sbjct: 72 QLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVA 131
Query: 103 REDNCHFLRVDKDDFIRIMRD 123
F + +D +++ +
Sbjct: 132 SLP-TDFAVLSRDALYQLLAN 151
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit,
CAMP-dependent protein kinase, alpha-catalytic SU;
cyclic adenosine monophosphate; HET: SEP TPO ANP TAM;
2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Length = 291
Score = 70.0 bits (171), Expect = 3e-15
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGC-----VTSLYAGEDFGKLALVNNAPRAATIV 101
+ QG+ G ++II++GS V+ V L + FG++AL+ N P+AAT+V
Sbjct: 190 KIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVV 249
Query: 102 TREDNCHFLRVDKDDFIRIMRDVE 125
R +++D+ F R++
Sbjct: 250 ARGP-LKCVKLDRPRFERVLGPCS 272
Score = 68.9 bits (168), Expect = 8e-15
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
T+ QGDEG ++Y+I QG +DV + + TS+ G FG+LAL+ PRAAT+ + +
Sbjct: 72 TVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPRAATVKAKTN- 129
Query: 107 CHFLRVDKDDFIRIMRDVEANTVRLKEH 134
+D+D + RI+ ++ E
Sbjct: 130 VKLWGIDRDSYRRILMGSTLRKRKMYEE 157
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural
genomics, joint center for structural genomics; HET:
MSE; 1.90A {Geobacter metallireducens}
Length = 142
Score = 65.4 bits (160), Expect = 1e-14
Identities = 10/84 (11%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGC-------VTSLYAGEDFGKLALVNNAPRAAT 99
+F + + + ++++G V++ G V S+ G FG +L+ ++
Sbjct: 39 VIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVSSLIKPYHYTSS 98
Query: 100 IVTREDNCHFLRVDKDDFIRIMRD 123
+ + ++ + +
Sbjct: 99 ARATKP-VRVVDINGARLREMSEN 121
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces
coelicolor structural genomics, PSI-2, protein structure
initiative; 2.00A {Streptomyces coelicolor A3}
Length = 149
Score = 61.9 bits (151), Expect = 4e-13
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAPRAATIVT 102
T+FH+GD G Y++ +G V + + + E G+L+L + PR AT
Sbjct: 38 TLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPGPRTATGTA 97
Query: 103 REDNCHFLRVDKDDFIRIMRD 123
+ L + D +
Sbjct: 98 LTE-VKLLALGHGDLQPWLNV 117
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic
nucleotide binding domain, C-linker, CAM SPHCN1, HCN;
HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Length = 198
Score = 61.1 bits (149), Expect = 2e-12
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCH 108
+G G + I QG VD+++ TSL G FG++ L+ R A++ C
Sbjct: 106 IQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLTRERRVASVKCET-YCT 164
Query: 109 FLRVDKDDFIRIMRD 123
+ F +++ +
Sbjct: 165 LFSLSVQHFNQVLDE 179
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 2; CNBD, C-linker, pacemaker,
HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A
{Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A*
3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Length = 202
Score = 60.4 bits (147), Expect = 3e-12
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCH 108
+G GK Y I G V V+ G L G FG++ L+ R A++ C
Sbjct: 107 IREGTIGKKMYFIQHGVVSVLTKG-NKEMKLSDGSYFGEICLLTRGRRTASVRADT-YCR 164
Query: 109 FLRVDKDDFIRIMRD 123
+ D+F ++ +
Sbjct: 165 LYSLSVDNFNEVLEE 179
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling;
HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB:
4avb_A* 4avc_A*
Length = 333
Score = 60.8 bits (147), Expect = 6e-12
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 4/112 (3%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLYAGEDFGKLALVNNAPRAATIVTR 103
+ QG+ S+ +I GS +V G + G G++AL+ ++PR+AT+ T
Sbjct: 46 VLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPRSATVTTI 105
Query: 104 EDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLERMVNCSSHQHFFQ 155
E + F ++ L+ + + +
Sbjct: 106 EP-LTGWTGGRGAFATMVHIPGVGERLLRTARQRLAAFVSPIPVRLADGTQL 156
>2z69_A DNR protein; beta barrel, dimerization helix, transcription
regulator; 2.10A {Pseudomonas aeruginosa}
Length = 154
Score = 55.4 bits (134), Expect = 1e-10
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 13/96 (13%)
Query: 33 RRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKL 88
G+ + F QG+ ++Y +I G V + G+ + F +
Sbjct: 38 VNLDKGAYV-------FRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 90
Query: 89 ALVNNAPR-AATIVTREDNCHFLRVDKDDFIRIMRD 123
+ + P AT R ++R ++D
Sbjct: 91 MMFMDTPNYVATAQAVVP-SQLFRFSNKAYLRQLQD 125
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged
helix-turn-helix motif, DNA binding, transcription
activator; HET: CMP; 2.40A {Thermus thermophilus}
Length = 216
Score = 55.7 bits (135), Expect = 2e-10
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNNAPRAATIVTRE 104
F+QGD G++ Y++ G V + G+ +L GE FG+++L++ R+A+ V E
Sbjct: 34 FYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERSASAVAVE 93
Query: 105 DNCHFLRVDKDDFIRIMRD 123
D L + ++D++ ++R
Sbjct: 94 D-TELLALFREDYLALIRR 111
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Length = 231
Score = 55.7 bits (135), Expect = 2e-10
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRAATIVTRE 104
Q EG++ +++ G V V G+ V +YA G+ A++ + R+A++
Sbjct: 41 VEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAVLAHQERSASVRALT 100
Query: 105 DNCHFLRVDKDDFIRIMRD 123
L + ++ F I+R
Sbjct: 101 P-VRTLMLHREHFELILRR 118
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable
regulatory domain of potassium channel, membrane PR
transport protein; 2.20A {Mus musculus}
Length = 160
Score = 53.9 bits (130), Expect = 5e-10
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVN--NAPRAATIVTREDN 106
+H G+ S ++ GS++V+ V L G+ FG + A A +
Sbjct: 62 YHAGESVDSLCFVVSGSLEVIQDD-EVVAILGKGDVFGDVFWKEATLAQSCANVRALT-Y 119
Query: 107 CHFLRVDKDDFIRIMRD 123
C + +D +++
Sbjct: 120 CDLHVIKRDALQKVLEF 136
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP),
dimer, inactive(APO, unliganded allostery, DNA binding,
cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB:
3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Length = 227
Score = 54.2 bits (131), Expect = 9e-10
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNNAPRAATIVTRE 104
F +G+ G YIII G V + G+ + ++ + FG+L++ + PR ++ T
Sbjct: 41 FAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTIT 100
Query: 105 DNCHFLRVDKDDFIRIMRD 123
+ + +D+D + D
Sbjct: 101 E-VRAVSMDRDALRSWIAD 118
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 54.1 bits (130), Expect = 2e-09
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
+ G+ G + +++GSV V L G FG++AL++ PR+AT+
Sbjct: 261 VICRIGEPGDRMFFVVEGSVSVATPNP---VELGPGAFFGEMALISGEPRSATVSAATT- 316
Query: 107 CHFLRVDKDDFIRIMRD 123
L + DF +
Sbjct: 317 VSLLSLHSADFQMLCSS 333
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery,
DNA binding cyclic A transcription regulator; HET: CMP;
1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A*
3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A*
1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A*
3rdi_A* 3rou_A* 3rpq_A* ...
Length = 210
Score = 52.2 bits (126), Expect = 4e-09
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNN-APRAATIVTR 103
HQG++ ++ Y I++GSV V+I GK + S G+ G+L L R+A + +
Sbjct: 31 IHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAK 90
Query: 104 EDNCHFLRVDKDDFIRIMRD 123
C + F ++++
Sbjct: 91 TA-CEVAEISYKKFRQLIQV 109
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix,
transcription factor, CAMP-B proteins, CAMP receptor
protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP:
a.4.5.4 b.82.3.2
Length = 207
Score = 52.2 bits (126), Expect = 4e-09
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNNA----PRAATI 100
+ GD ++ + II+GSV ++I G+ + +G+ FG+L L R+A +
Sbjct: 25 IYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWV 84
Query: 101 VTREDNCHFLRVDKDDFIRIMRD 123
+ + C + F + +
Sbjct: 85 RAKVE-CEVAEISYAKFRELSQQ 106
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding,
DNA-binding nucleotide-binding, transcription,
transcription regulation; HET: CMP; 1.66A {Escherichia
coli}
Length = 260
Score = 52.4 bits (126), Expect = 4e-09
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNN-APRAATIVTR 103
HQG++ ++ Y I++GSV V+I GK + S G+ G+L L R+A + +
Sbjct: 81 IHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAK 140
Query: 104 EDNCHFLRVDKDDFIRIMRD 123
C + F ++++
Sbjct: 141 TA-CEVAEISYKKFRQLIQV 159
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP
regulatory protein, structural genomi 2, protein
structure initiative; 2.20A {Ruegeria pomeroyi} PDB:
3h3z_A*
Length = 237
Score = 51.9 bits (125), Expect = 7e-09
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNNAPRAATIVTRE 104
F Q ++ ++ +++I G V + G V S++ GE FG+ + N P +
Sbjct: 46 FLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVALRNTPYPVSAEAVT 105
Query: 105 DNCHFLRVDKDDFIRIMRD 123
C + + F+ +MR
Sbjct: 106 P-CEVMHIPSPVFVSLMRR 123
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics,
porphyromona gingivalis, PSI, protein structure
initiative; 1.90A {Porphyromonas gingivalis} SCOP:
a.4.5.4 b.82.3.2
Length = 232
Score = 51.5 bits (124), Expect = 7e-09
Identities = 11/79 (13%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNNAPRAATIVTRE 104
F +GD + + + +G + ++ G+ ++ + G+ FG ++T + E
Sbjct: 45 FSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETCSSTAIAVE 104
Query: 105 DNCHFLRVDKDDFIRIMRD 123
+ L + + +++
Sbjct: 105 N-SKVLAIPVEAIEALLKG 122
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity,
CRP, CLP, C-DI-GMP receptor, quorum SENS binding,
transcription; 2.30A {Xanthomonas campestris PV}
Length = 230
Score = 50.8 bits (122), Expect = 2e-08
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLAL-VNNAPRAATIVTR 103
F GD + Y +I GSV ++ + V + +GE G++ L + + R + TR
Sbjct: 46 FRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIESDTREVILRTR 105
Query: 104 EDNCHFLRVDKDDFIRIMR 122
C + + ++ +
Sbjct: 106 TQ-CELAEISYERLQQLFQ 123
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide
monophosphate, CNMP, CNMP-binding, structural genomics;
NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Length = 137
Score = 49.0 bits (117), Expect = 3e-08
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 15/89 (16%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIYGKGC-----VTSLYAGEDFGKLALV---------NNA 94
+GD II+G ++ V G + L G+ G L N
Sbjct: 41 VREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLP 100
Query: 95 PRAATIVTREDNCHFLRVDKDDFIRIMRD 123
T+ + D+ +
Sbjct: 101 SSTRTVKALT-EVEAFALIADELKFVASQ 128
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription,
transcription regulation; HET: BOG; 1.90A {Anabaena}
PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Length = 243
Score = 50.0 bits (120), Expect = 3e-08
Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 14/122 (11%)
Query: 8 LRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVD 67
+ + R T + + F GD + Y +++G+V
Sbjct: 21 MIVTQDKALANVFRQMATGAFPPVVETFERNKTI-------FFPGDPAERVYFLLKGAVK 73
Query: 68 VVIY---GKGCVTSLY-AGEDFGKLALVNN--APRAATIVTREDNCHFLRVDKDDFIRIM 121
+ G+ +L FG L+L+ + R V L + + +
Sbjct: 74 LSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTP-VELLSAPIEQVEQAL 132
Query: 122 RD 123
++
Sbjct: 133 KE 134
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural
genomics, joint center for structura genomics, JCSG;
2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4
b.82.3.2
Length = 232
Score = 49.6 bits (119), Expect = 5e-08
Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPR-AATIVTR 103
G+ +++G + +V V + A +L A++ V
Sbjct: 55 IKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAH 114
Query: 104 EDNCHFLRVDKDDFIRIMRD 123
+ H + + K + +
Sbjct: 115 TE-VHTVCISKAFVLSDLFR 133
>3ukn_A Novel protein similar to vertebrate potassium VOL channel,
subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD,
CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB:
3ukt_B 3ukv_B
Length = 212
Score = 48.9 bits (117), Expect = 7e-08
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNN--APRAATIVTREDN 106
QGD ++ Y + GS++V+ + L G+ G +L A +
Sbjct: 110 IRQGDALQAIYFVCSGSMEVL-KDNTVLAILGKGDLIGSDSLTKEQVIKTNANVKALT-Y 167
Query: 107 CHFLRVDKDDFIRIMRD 123
C + ++R
Sbjct: 168 CDLQYISLKGLREVLRL 184
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat
transcription; HET: PR3; 2.3A {Listeria monocytogenes}
SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Length = 238
Score = 47.7 bits (114), Expect = 2e-07
Identities = 8/81 (9%), Positives = 18/81 (22%), Gaps = 7/81 (8%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNNAPRA--ATIVT 102
F+Q D + + G + G Y + V
Sbjct: 30 FNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVI 89
Query: 103 REDNCHFLRVDKDDFIRIMRD 123
E + ++ ++
Sbjct: 90 SEQ-ATAYVIKINELKELLSK 109
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Length = 213
Score = 47.2 bits (113), Expect = 2e-07
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNNAPR-AATIVTR 103
HQ D + I+++G++ GK + + ++ PR +V
Sbjct: 34 KHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAG 93
Query: 104 EDNCHFLRVDKDDFIRIMRD 123
E+ L + K+ F+ ++
Sbjct: 94 EN-SKILSIPKEVFLDLLMK 112
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix,
homodimer, transcription regulator; 3.60A {Pseudomonas
aeruginosa}
Length = 227
Score = 46.5 bits (111), Expect = 5e-07
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNNAPR-AATIVTR 103
F QG+ ++Y +I G V + G+ + + F + + + P AT
Sbjct: 44 FRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAV 103
Query: 104 EDNCHFLRVDKDDFIRIMRD 123
R ++R ++D
Sbjct: 104 VP-SQLFRFSNKAYLRQLQD 122
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic
nucleotide-binding domain, structural genomics, joint
for structural genomics; 2.55A {Eubacterium rectale atcc
33656}
Length = 220
Score = 45.3 bits (108), Expect = 1e-06
Identities = 10/83 (12%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGED--FGKLALVNNAPRAATI 100
+ + + ++ G + I G+ L+ + ++ + TI
Sbjct: 36 IIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSIQFEVTI 95
Query: 101 VTREDNCHFLRVDKDDFIRIMRD 123
+D + + + IM+D
Sbjct: 96 EAEKD-TDLWIIPAEIYKGIMKD 117
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration;
HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP:
a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A*
3e5q_A 2h6b_A* 2h6c_A
Length = 250
Score = 44.6 bits (106), Expect = 3e-06
Identities = 11/79 (13%), Positives = 20/79 (25%), Gaps = 8/79 (10%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNNAPRAATIVTRE 104
G+E S +++G + + I G + GKL E
Sbjct: 44 IMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLYPT---GNNIYATAME 100
Query: 105 DNCHFLRVDKDDFIRIMRD 123
+ + R
Sbjct: 101 P-TRTCWFSEKSLRTVFRT 118
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken
structural genomics/proteomics in RSGI; 1.92A {Thermus
thermophilus} PDB: 2zdb_A
Length = 195
Score = 42.6 bits (101), Expect = 8e-06
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 33 RRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKL 88
+R A + + +G+E ++ Y + +G V VV G+ G+ FG+
Sbjct: 2 KRFARKETI-------YLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGEE 54
Query: 89 ALVNNAPRAATIVTREDNCHFLRVDKDDF 117
AL T + ++
Sbjct: 55 ALEGK-AYRYTAEAMTE-AVVQGLEPRAM 81
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme
sensor, catabolite gene activator protein; HET: HEM;
2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Length = 222
Score = 41.9 bits (99), Expect = 2e-05
Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 11/78 (14%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAPRAATIVTRED 105
+ ++++ G + V + G+ + L +G+ F + + E
Sbjct: 35 CTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMHS-------GCLVEATER 87
Query: 106 NCHFLRVDKDDFIRIMRD 123
D F + ++
Sbjct: 88 -TEVRFADIRTFEQKLQT 104
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA
transcription regulator, DNA binding protein; HET: HEM;
2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Length = 220
Score = 38.8 bits (91), Expect = 2e-04
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAPRAATIVTRED 105
+ E +++ G V V + + + L AG+ F A I ED
Sbjct: 39 YTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFC-------THTRAFIQAMED 91
Query: 106 NCHFLRVDKDDFIRIMRD 123
L D +F I+ +
Sbjct: 92 -TTILYTDIRNFQNIVVE 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.001
Identities = 20/151 (13%), Positives = 48/151 (31%), Gaps = 44/151 (29%)
Query: 21 RDRKTSGGRTIARRCASGSELVDWLMTMFHQGDEGKSWYIIIQGSVDVVIYG-KGCVTSL 79
RDR + + A+ S + L + + ++ + +V+I G G
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKL----------RQALLELRPAKNVLIDGVLGS---- 161
Query: 80 YAGEDFGKLALVNNAPRAATIVTRED---------NCH------------FLRVDKDDFI 118
GK + + + + + D NC+ ++D +
Sbjct: 162 ------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 119 R--IMRDVEANTVRLKEHGKDVLVLERMVNC 147
R +++ ++ + +L + NC
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein;
NMR {Mus musculus} SCOP: a.4.5.31
Length = 105
Score = 32.2 bits (73), Expect = 0.021
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 6 WVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMF 49
++R + L D +RDR + G+++VDWL T
Sbjct: 23 AIVRVMQLPDSGLEIRDRM--WLKITIANAVIGADVVDWLYTHV 64
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics,
APC88869, cyclic nucleotide binding REG protein, PSI-2;
1.80A {Cytophaga hutchinsonii}
Length = 194
Score = 32.0 bits (73), Expect = 0.052
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLYAGEDF--GKLALVNNAPRAATIVTR 103
G+ + Y +++G + + G T + +A P I +
Sbjct: 42 LKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQPADFYIQSV 101
Query: 104 EDNCHFLRVDKDDFIRIMR 122
E+ C L + + +
Sbjct: 102 EN-CELLSITYTEQENLFE 119
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Length = 120
Score = 30.5 bits (68), Expect = 0.091
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 13 LNDESGTLRDRKTSGGRTIARRCASGSELVDWLM 46
++D S +R + ++ GS LVDWL+
Sbjct: 15 MHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLI 48
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: a.4.5.31
Length = 127
Score = 30.5 bits (68), Expect = 0.11
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 13 LNDESGTLRDRKTSGGRTIARRCASGSELVDWLM 46
+ D +++ + I C +G+ ++DWL+
Sbjct: 25 MKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLV 58
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Mus musculus} SCOP:
a.4.5.31 PDB: 1w4m_A
Length = 109
Score = 29.6 bits (66), Expect = 0.16
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 13 LNDESGTLRDRKTSGGRTIARRCASGSELVDWLMT 47
+ D +++ + + C +GS ++DWL++
Sbjct: 15 MKDPEKGIKELNLEKDKKVFNHCLTGSGVIDWLVS 49
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 29.9 bits (68), Expect = 0.27
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 83 EDFGKL-ALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMR 122
E G+L LVNNA + N F + I
Sbjct: 79 EQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINN 119
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 28.3 bits (63), Expect = 0.44
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 20 LRDRKTSGGRTIARRCASGSELVDWLMTMFHQGDE 54
LR + C + E VDWL +
Sbjct: 27 LRKHR--QHFKKYGNCFTAGEAVDWLYDLLRNNSN 59
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 27.7 bits (61), Expect = 1.5
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 130 RLKEHGKDVLVLER 143
+L E G V ++++
Sbjct: 21 QLAEKGHQVHIIDQ 34
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic
encephalopathy, ETHE1, structural genomics, protein
structure initiative; 1.48A {Arabidopsis thaliana}
Length = 245
Score = 27.5 bits (62), Expect = 1.7
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 103 REDNCHFLRVDKDDFIRIMRD 123
+ N L DK+ F IM +
Sbjct: 197 MQHNPR-LTKDKETFKTIMSN 216
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 1.9
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 24/75 (32%)
Query: 16 ESGT-LRDRKTSGGRTIARRCASGSELVDW---------------------LMTMFHQGD 53
G+ LR S I V W L + H+
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIR--LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK 520
Query: 54 EGKSWYIIIQGSVDV 68
+G +I+ G++D+
Sbjct: 521 DGTGVRVIVAGTLDI 535
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 27.3 bits (61), Expect = 2.3
Identities = 3/16 (18%), Positives = 11/16 (68%)
Query: 129 VRLKEHGKDVLVLERM 144
+ K+ G +V+++++
Sbjct: 138 LAAKKAGANVILVDKA 153
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 27.3 bits (60), Expect = 2.4
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 130 RLKEHGKDVLVLER 143
LK+ K VLV+E+
Sbjct: 19 ELKKLNKKVLVIEK 32
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 27.4 bits (60), Expect = 2.4
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 130 RLKEHGKDVLVLER 143
RL G+ VL+++R
Sbjct: 47 RLASSGQRVLIVDR 60
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 26.8 bits (60), Expect = 3.1
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 81 AGEDFGKL-ALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMR 122
FG+L LVNNA + + + R++R
Sbjct: 98 VDRQFGRLDGLVNNAG-----IVDYPQ-RVDEMSVERIERMLR 134
>3uc0_A Envelope protein; dengue antibody membrane fusion, viral
protein-immune system; 2.71A {Dengue virus 4}
Length = 165
Score = 26.3 bits (57), Expect = 3.3
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 7/29 (24%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIYGKGCVT 77
F +G G +W VD+V+ GCVT
Sbjct: 11 FVEGVSGGAW-------VDLVLEHGGCVT 32
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 26.4 bits (59), Expect = 3.8
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 83 EDFGKL-ALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMR 122
+FG++ LVNNA + FL + ++F I+
Sbjct: 103 AEFGRIDCLVNNAG-----IASIVRDDFLDLKPENFDTIVG 138
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 26.7 bits (58), Expect = 4.3
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 130 RLKEHGKDVLVLER 143
RL + G ++E
Sbjct: 29 RLTQAGIPTQIVEM 42
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 26.2 bits (57), Expect = 5.6
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 130 RLKEHGKDVLVLER 143
RL E G L+LE
Sbjct: 23 RLGEAGVQTLMLEM 36
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin
adaptor AP-2 complex...; dishevelled, frizzled
internalization; 3.50A {Mus musculus}
Length = 385
Score = 26.1 bits (56), Expect = 6.3
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 7 VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMF 49
V + + + +RDR TI GS++VDWL
Sbjct: 12 VTKAMAAPESGLEVRDRMW-LKITI-PNAFLGSDVVDWLYHHV 52
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 26.1 bits (58), Expect = 6.4
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 129 VRLKEHGKDVLVLERM 144
+ G DVLVLER
Sbjct: 58 IEAARAGADVLVLERT 73
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 26.0 bits (58), Expect = 6.7
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 86 GKLALVNNAPRAATIVTR 103
G LAL P A +V R
Sbjct: 99 GSLALQGFRPDDAYLVRR 116
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 25.8 bits (57), Expect = 7.2
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 128 TVRLKEHGKDVLVLERM 144
V ++ G V++LE+
Sbjct: 142 AVSARDAGAKVILLEKE 158
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 25.8 bits (57), Expect = 8.7
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 128 TVRLKEHGKDVLVLERM 144
+ + G V+++E+
Sbjct: 142 AISATDSGAKVILIEKE 158
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl
5'-monophosphate synthetase...; ATP-grAsp superfamily,
ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus
jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A*
2r7m_A* 2r7n_A*
Length = 361
Score = 25.3 bits (55), Expect = 9.0
Identities = 8/47 (17%), Positives = 21/47 (44%)
Query: 108 HFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLERMVNCSSHQHFF 154
+F+ ++F + D++ + E + + E +V + H+F
Sbjct: 166 YFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYF 212
>3ice_A Transcription termination factor RHO; transcription, ATPase,
hexamer, helicase, RNA, RECA, OB fold ATP-binding,
hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli
k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Length = 422
Score = 25.6 bits (57), Expect = 9.2
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 130 RLKEHGKDVLVL 141
RL EH KDV++L
Sbjct: 255 RLVEHKKDVIIL 266
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA
capture mechanism, ATP-binding, hydrolase,
nucleotide-binding, RN binding; 2.35A {Thermotoga
maritima}
Length = 427
Score = 25.3 bits (56), Expect = 9.8
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 130 RLKEHGKDVLVL 141
RL E DV++L
Sbjct: 256 RLVEFNYDVVIL 267
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.421
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,497,330
Number of extensions: 145830
Number of successful extensions: 720
Number of sequences better than 10.0: 1
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 90
Length of query: 155
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 69
Effective length of database: 4,300,587
Effective search space: 296740503
Effective search space used: 296740503
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.2 bits)