RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15589
(155 letters)
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 68.6 bits (167), Expect = 2e-16
Identities = 61/81 (75%), Positives = 74/81 (91%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
+F+QG+EG SWYII++GSV+VVIYGKG V +L+ G+DFGKLALVN+APRAA+IV REDN
Sbjct: 44 VLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDN 103
Query: 107 CHFLRVDKDDFIRIMRDVEAN 127
CHFLRVDK+DF RI+RDVEAN
Sbjct: 104 CHFLRVDKEDFNRILRDVEAN 124
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 136
Score = 58.6 bits (141), Expect = 2e-12
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
T+ QGDEG ++Y+I QG +DV + + + G FG+LAL+ PRAAT+ + +
Sbjct: 53 TVIQQGDEGDNFYVIDQGEMDVYVNNEWATSV-GEGGSFGELALIYGTPRAATVKAKTN- 110
Query: 107 CHFLRVDKDDFIRIMRD 123
+D+D + RI+
Sbjct: 111 VKLWGIDRDSYRRILMG 127
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 51.7 bits (123), Expect = 9e-10
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKG----------CVTSLYAGEDFGKLALVNNAPR 96
+ QGD S++I+ G V + + KG + G+ FG+LALV N PR
Sbjct: 35 QIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQYFGELALVTNKPR 94
Query: 97 AATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLV 140
AA+ L +D F R++ R ++ LV
Sbjct: 95 AASAHAIGT-VKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLV 137
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 49.8 bits (118), Expect = 5e-09
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGED---FGKLALVNNAPRAATIVTR 103
+ QGD+G ++Y+I +G+ D+ + G + ++ FG+LAL+ N PRAATI
Sbjct: 49 HVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITAT 108
Query: 104 EDNCHFLRVDKDDFIRIMRDVEANTVRL 131
+D+ F RI+ A ++
Sbjct: 109 SP-GALWGLDRVTFRRIIVKNNAKKRKM 135
>d1o7fa1 a.4.5.31 (A:180-321) Regulatory domain of epac2, domain 2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 142
Score = 46.8 bits (111), Expect = 6e-08
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 1 MARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLM 46
+ RAG +LR +L+ +RDRK +T R+C G+ELVDW++
Sbjct: 6 ILRAGKILRIAILSRAPHMIRDRK-YHLKTY-RQCCVGTELVDWMI 49
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 132
Score = 43.3 bits (101), Expect = 1e-06
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTS----LYAGEDFGKLALVNNAPRAATIVT 102
T+ HQG++ ++ Y I++GSV V+I + L G+ G+L L + V
Sbjct: 23 TLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVR 82
Query: 103 REDNCHFLRVDKDDFIRIMRDVEANTVRLKEH 134
+ C + F ++++ +RL
Sbjct: 83 AKTACEVAEISYKKFRQLIQVNPDILMRLSAQ 114
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 41.7 bits (97), Expect = 4e-06
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTS-----LYAGEDFGKLALVNNAPRAATIV 101
+ QG+ G ++II++GS V+ L + FG++AL+ N PRAAT+V
Sbjct: 35 KIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVV 94
Query: 102 TREDNCHFLRVDKDDFIRIMRD 123
R +++D+ F R++
Sbjct: 95 ARGP-LKCVKLDRPRFERVLGP 115
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 41.4 bits (96), Expect = 7e-06
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIYG-----KGCVTSLYAGEDFGKLALVNNAPRAATIVTR 103
F QGD G +WY ++ GS+DV + ++++N PR ATIVTR
Sbjct: 59 FRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESILDNTPRHATIVTR 118
Query: 104 EDNCHFLRVDKDDFIRIMRD 123
E LR++++DF +
Sbjct: 119 ES-SELLRIEQEDFKALWEK 137
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti
[TaxId: 381]}
Length = 133
Score = 40.1 bits (93), Expect = 2e-05
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDN 106
+ G+ G + +++GSV V L G FG++AL++ PR+AT+
Sbjct: 44 VICRIGEPGDRMFFVVEGSVSVATP---NPVELGPGAFFGEMALISGEPRSATVSAATT- 99
Query: 107 CHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLERM 144
L + DF + ++ LER
Sbjct: 100 VSLLSLHSADFQMLCSSSPEIAEIFRK-----TALERR 132
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396,
N-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 142
Score = 37.5 bits (86), Expect = 2e-04
Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAPRAATIVT 102
T+F +GD + + + +G + ++ G + G+ FG ++T +
Sbjct: 34 TVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETCSSTAIA 93
Query: 103 REDNCHFLRVDKDDFIRIMRD 123
E+ L + + +++
Sbjct: 94 VEN-SKVLAIPVEAIEALLKG 113
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 36.3 bits (83), Expect = 3e-04
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 47 TMFHQGDEGKSWYIIIQGSVDVVI----YGKGCVTSLYAGEDFGKLALVNNAP----RAA 98
T+ + GD ++ + II+GSV ++I + + L +G+ FG+L L R+A
Sbjct: 22 TIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSA 81
Query: 99 TIVTREDNCHFLRVDKDDFIRIMRD 123
+ + + C + F + +
Sbjct: 82 WVRAKVE-CEVAEISYAKFRELSQQ 105
>d1fsha_ a.4.5.31 (A:) Segment polarity protein Dishevelled-1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 32.2 bits (73), Expect = 0.007
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 5 GWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMTMFH 50
++R + L D +RDR + G+++VDWL T
Sbjct: 11 SAIVRVMQLPDSGLEIRDRMW--LKITIANAVIGADVVDWLYTHVE 54
>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 115
Score = 29.9 bits (67), Expect = 0.047
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 12 LLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMT 47
+ D +++ + I C +G+ ++DWL++
Sbjct: 17 SMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVS 52
>d1v3fa_ a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 120
Score = 27.6 bits (61), Expect = 0.31
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 12 LLNDESG-TLRDRKTSGGRTIARRCASGSELVDWLMT 47
+ + +G G T ++ GS LVDWL++
Sbjct: 15 MHDTSTGIRPSPNME-QGSTY-KKTFLGSSLVDWLIS 49
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 25.4 bits (56), Expect = 2.1
Identities = 12/49 (24%), Positives = 19/49 (38%)
Query: 94 APRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLE 142
AP TI + H ++ D + + +TV LK G + E
Sbjct: 43 APVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEE 91
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc
{Mycoplasma capricolum [TaxId: 2095]}
Length = 154
Score = 25.1 bits (55), Expect = 3.0
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 94 APRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLE 142
AP + +VT H + + I+ + +TV L +G + V +
Sbjct: 49 APVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQ 97
>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia
heterothallica, aka Myceliophthora thermophila [TaxId:
78579]}
Length = 332
Score = 25.6 bits (55), Expect = 3.0
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 115 DDFIRIMRDVEANTVRLK 132
I+ NTVR +
Sbjct: 30 QPLENILAANGVNTVRQR 47
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus
aculeatus) [TaxId: 5053]}
Length = 334
Score = 25.4 bits (55), Expect = 3.9
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 115 DDFIRIMRDVEANTVRLK 132
I+ D N++R +
Sbjct: 30 QALETILADAGINSIRQR 47
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc
{Bacillus subtilis [TaxId: 1423]}
Length = 158
Score = 24.7 bits (54), Expect = 4.5
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 94 APRAATIVTREDNCHFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLV 140
+P I+ H + + D I+ +TV LK G V
Sbjct: 51 SPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFV 97
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 24.9 bits (53), Expect = 4.5
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 130 RLKEHGKDVLVLER 143
RL E G L+LE
Sbjct: 20 RLGEAGVQTLMLEM 33
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 24.8 bits (52), Expect = 5.0
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 130 RLKEHGKDVLVLER 143
+ +GK VL ++R
Sbjct: 24 IMSVNGKKVLHMDR 37
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 24.9 bits (53), Expect = 5.2
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 130 RLKEHGKDVLVLER 143
RL + G ++E
Sbjct: 25 RLTQAGIPTQIVEM 38
>d1svba2 f.10.1.1 (A:1-302) Envelope glycoprotein {Tick-borne
encephalitis virus [TaxId: 11084]}
Length = 302
Score = 24.7 bits (54), Expect = 5.3
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIYGKGCVT 77
F G +G + V +V+ GCVT
Sbjct: 11 FVTGTQGTTR-------VTLVLELGGCVT 32
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 24.9 bits (53), Expect = 5.5
Identities = 3/14 (21%), Positives = 5/14 (35%)
Query: 130 RLKEHGKDVLVLER 143
L G V + +
Sbjct: 22 ELVGAGYKVAMFDI 35
>d1ok8a2 f.10.1.1 (A:1-297) Envelope glycoprotein {Dengue virus
type 2 [TaxId: 11060]}
Length = 297
Score = 24.7 bits (54), Expect = 5.8
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 7/29 (24%)
Query: 49 FHQGDEGKSWYIIIQGSVDVVIYGKGCVT 77
F +G G SW VD+V+ CVT
Sbjct: 11 FVEGVSGGSW-------VDIVLEHGSCVT 32
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
Length = 314
Score = 24.8 bits (53), Expect = 6.1
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 130 RLKEHGKDVLVLER 143
+L E G V ++++
Sbjct: 20 QLAEKGHQVHIIDQ 33
>d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]}
Length = 101
Score = 23.9 bits (52), Expect = 6.6
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 108 HFLRVDKDDFIRIMRDVEANTVRLKEHGKDVLVLERMVNCSSHQH 152
L++D ++R+V+ + L G + E++ S +
Sbjct: 6 DILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRA 50
>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 298
Score = 24.4 bits (52), Expect = 6.7
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 130 RLKEHGKDVLVLER 143
LK+ K VLV+E+
Sbjct: 19 ELKKLNKKVLVIEK 32
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 24.7 bits (52), Expect = 7.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 130 RLKEHGKDVLVLER 143
L + G +V+VLE
Sbjct: 17 LLHDSGLNVVVLEA 30
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 449
Score = 24.5 bits (51), Expect = 7.5
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 130 RLKEHGKDVLVLER 143
+L+ G DV +LE
Sbjct: 23 QLQSFGMDVTLLEA 36
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac
isoform [TaxId: 9031]}
Length = 81
Score = 23.4 bits (50), Expect = 7.6
Identities = 9/54 (16%), Positives = 17/54 (31%)
Query: 72 GKGCVTSLYAGEDFGKLALVNNAPRAATIVTREDNCHFLRVDKDDFIRIMRDVE 125
G + ++ D + R+D D+F+ M+ VE
Sbjct: 28 ADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE 81
>d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain
{Bacillus sp. [TaxId: 1409]}
Length = 357
Score = 24.4 bits (52), Expect = 7.8
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 112 VDKDDFIRIMRDVEANTVRL 131
V+++ F+ + D +N +RL
Sbjct: 52 VNENAFVALSNDWGSNMIRL 71
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 24.4 bits (51), Expect = 8.0
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 130 RLKEHGKDVLVLER 143
L GK VL +++
Sbjct: 23 LLSVDGKKVLHIDK 36
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal
domain {Rhodospirillum rubrum [TaxId: 1085]}
Length = 132
Score = 23.8 bits (50), Expect = 8.2
Identities = 1/20 (5%), Positives = 8/20 (40%)
Query: 48 MFHQGDEGKSWYIIIQGSVD 67
+ + ++++ G +
Sbjct: 33 VCTGEGDENGVFVVVDGRLR 52
>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis
[TaxId: 1402]}
Length = 387
Score = 24.4 bits (52), Expect = 8.4
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 116 DFIRIMRDVEANTVRLK 132
D + +++ N VR++
Sbjct: 42 DIFKTLKEAGVNYVRVR 58
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 24.2 bits (51), Expect = 9.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 130 RLKEHGKDVLVLER 143
RL E GK VL+LER
Sbjct: 20 RLSEAGKKVLLLER 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.137 0.421
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 599,654
Number of extensions: 26313
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 54
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.3 bits)