Query psy1559
Match_columns 138
No_of_seqs 102 out of 267
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 16:28:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ay9_B Follitropin subunit bet 100.0 8.1E-43 2.8E-47 254.6 9.5 99 24-129 1-99 (111)
2 1hcn_B Human chorionic gonadot 100.0 4.2E-41 1.4E-45 255.3 10.5 104 20-130 3-106 (145)
3 2k8p_A Sclerostin; WNT signall 96.1 0.031 1E-06 43.6 8.6 88 22-115 52-144 (189)
4 4ay9_A Glycoprotein hormones, 87.3 0.35 1.2E-05 33.5 2.5 57 51-119 25-89 (92)
5 2qcq_A Bone morphogenetic prot 28.7 1.4E+02 0.0048 20.3 8.4 85 23-115 5-110 (110)
6 2arp_A Inhibin beta A chain; c 28.7 1.4E+02 0.0049 20.4 7.2 84 23-115 8-116 (116)
7 3hh2_A Growth/differentiation 21.1 1.8E+02 0.0063 19.7 5.0 85 22-115 11-109 (109)
8 2ask_A Artemin; glial cell der 18.9 2.4E+02 0.0083 19.5 7.0 86 22-115 12-112 (113)
9 2h62_A BMP-2, BMP-2A, bone mor 17.6 2.5E+02 0.0086 19.2 6.9 85 22-115 10-114 (114)
10 2kcn_A Antifungal protein; NMR 17.2 41 0.0014 21.1 0.8 40 74-133 10-49 (55)
No 1
>4ay9_B Follitropin subunit beta; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_B* 1fl7_B*
Probab=100.00 E-value=8.1e-43 Score=254.64 Aligned_cols=99 Identities=17% Similarity=0.378 Sum_probs=95.9
Q ss_pred CCceeeeeeEEEEecCCCCCcceeeEEEeeeeeeeccCcCCCccCCCCCCCCCceecCceEEEEEEeCCCCCCccCCeee
Q psy1559 24 LDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEV 103 (138)
Q Consensus 24 ~~C~~~~~t~~vek~dC~~~~C~~~I~tt~C~G~C~T~e~p~~~~p~~~~~q~vCty~~~~y~tv~L~gC~~gvdp~~~~ 103 (138)
.+|+|+|+||.|||+||+.+ +.||||||||||+|+| |+|++|+++++|+||||++++|++++|||||+|||| +
T Consensus 1 ~~C~~~n~ti~vEk~~C~~c---~~i~TtiC~G~C~T~d-~v~~~p~~~~~Q~VCty~~~~y~tv~LpgC~pgVdP---~ 73 (111)
T 4ay9_B 1 NSCELTNITIAIEKEECRFC---ISINTTWCAGYCYTRD-LVYKDPARPKIQKTCTFKELVYETVRVPGCAHHADS---L 73 (111)
T ss_dssp CCEEEEEEEEEEEEGGGTEE---EEEEEEEEEEEEEEEC-CSSCCTTCCCCCCEEEEEEEEEEEEEECCCTTSCCE---E
T ss_pred CCcceEeEEEEEEcCCCCcc---cEEEEeeEccCcccCC-ccccCcCCCccCCCcccCCEEEEEEECCCccCCCCC---C
Confidence 47999999999999999998 8999999999999998 999999999999999999999999999999999999 9
Q ss_pred EEEeeeeceecCCCCCCCCccccccC
Q psy1559 104 YRYLEALSCKCSVCKSSEASCEGLRY 129 (138)
Q Consensus 104 ~tYpvA~SC~C~~C~~~~tdC~~~~~ 129 (138)
|+||||+||+|++|++++|||+..+.
T Consensus 74 ~tYPVA~sC~C~~C~t~~TdCt~~~~ 99 (111)
T 4ay9_B 74 YTYPVATQCHCGKCDSDSTDCTVRGL 99 (111)
T ss_dssp EEEEEEEEEEEECBCTTTEEEESCCS
T ss_pred EEeeecccccCCCcCCCCccccccCC
Confidence 99999999999999999999997765
No 2
>1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B*
Probab=100.00 E-value=4.2e-41 Score=255.32 Aligned_cols=104 Identities=20% Similarity=0.368 Sum_probs=100.2
Q ss_pred CCCcCCceeeeeeEEEEecCCCCCcceeeEEEeeeeeeeccCcCCCccCCCCCCCCCceecCceEEEEEEeCCCCCCccC
Q psy1559 20 QDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQ 99 (138)
Q Consensus 20 ~~~~~~C~~~~~t~~vek~dC~~~~C~~~I~tt~C~G~C~T~e~p~~~~p~~~~~q~vCty~~~~y~tv~L~gC~~gvdp 99 (138)
+..+++||++|+||+|||+||+++ +.||||||+|||+|+| |+|++|+...+|+||||++|+|++|+||||++||||
T Consensus 3 ~~~~~~C~l~n~Ti~vEke~C~~c---~~InTtiC~GyC~T~d-pv~~~p~~~~~Q~vCTy~e~~y~tv~LpgC~~gvdp 78 (145)
T 1hcn_B 3 EPLRPRCRPINATLAVEKEGCPVC---ITVNTTICAGYCPTMT-RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNP 78 (145)
T ss_dssp CCSSBBSEEEEEEEEECCTTCSCC---EEEEEEEEEEEEEECC-CCBTTCSSCCCCEEEEEEEEEEEEEECTTCCSSCCC
T ss_pred CcccCCCeEeeeEEEEeeCCCCce---EEEEeeeEcCEeecCC-CCCcCCCCCccCCCcccCCEEEEEEEcCCCcCCCCc
Confidence 457899999999999999999999 8999999999999998 999999999999999999999999999999999999
Q ss_pred CeeeEEEeeeeceecCCCCCCCCccccccCC
Q psy1559 100 GTEVYRYLEALSCKCSVCKSSEASCEGLRYS 130 (138)
Q Consensus 100 ~~~~~tYpvA~SC~C~~C~~~~tdC~~~~~~ 130 (138)
+|+||||+||+|++|++++|||++++..
T Consensus 79 ---~~tYPVA~SC~C~~C~~~~tdC~~~~~~ 106 (145)
T 1hcn_B 79 ---VVSYAVALSCQCALCRRSTTDCGGPKDH 106 (145)
T ss_dssp ---EEEEEEEEEEEEEECCTTTEEEECCCSC
T ss_pred ---cEEecccccccCCCCCCCCccccCcCCC
Confidence 9999999999999999999999998864
No 3
>2k8p_A Sclerostin; WNT signalling pathway, bone formation, alternative splicing, glycoprotein, secreted, signaling protein; NMR {Homo sapiens} PDB: 2kd3_A
Probab=96.13 E-value=0.031 Score=43.56 Aligned_cols=88 Identities=17% Similarity=0.270 Sum_probs=66.7
Q ss_pred CcCCceeeeeeEEEEecCCCCCcceeeEEEeeeeeeeccCc-CCCccCC---CCCC-CCCceecCceEEEEEEeCCCCCC
Q psy1559 22 ITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNE-TSDWRFP---YKRS-HHPVCQHGARALKVVILNNCEEN 96 (138)
Q Consensus 22 ~~~~C~~~~~t~~vek~dC~~~~C~~~I~tt~C~G~C~T~e-~p~~~~p---~~~~-~q~vCty~~~~y~tv~L~gC~~g 96 (138)
...+|+-..++-++...+|... ..|.-..|+|.|.... .|.|.-- +..+ ....|+-...+.+.++|. |++|
T Consensus 52 ~~~~Crg~r~r~Yisdg~CrS~---kpVk~lvCsG~C~p~~~lpn~i~~~K~wr~s~~~~cCvp~rsRrrRIqm~-C~DG 127 (189)
T 2k8p_A 52 SEYSCRELHFTRYVTDGPCRSA---KPVTELVCSGQCGPARLLPNAIGRGKWWRPSGPDFRCIPDRYRAQRVQLL-CPGG 127 (189)
T ss_dssp CCSSSCEEEEEECCCCSSCEES---SCEEEEEECCCCCCCCCCSSCCCSSCCCSCCCCCCCCEECCEEEEEEEEE-CCTT
T ss_pred cccccccceeeEEEecCceeEc---cccccceEeccccCccccccccccccccccCCCcccccCCceeeEEEEEE-cCCC
Confidence 3578999999999988787776 7999999999997432 2333210 1112 256899999999999996 9999
Q ss_pred ccCCeeeEEEeeeeceecC
Q psy1559 97 VEQGTEVYRYLEALSCKCS 115 (138)
Q Consensus 97 vdp~~~~~tYpvA~SC~C~ 115 (138)
.-| .+|.+-+-++|.|.
T Consensus 128 tt~--rt~ki~vV~sCkCk 144 (189)
T 2k8p_A 128 EAP--RARKVRLVASCKCK 144 (189)
T ss_dssp SCC--EEEEEEEECCEECC
T ss_pred Cee--eEEEEEEEEeeccc
Confidence 775 35667788999998
No 4
>4ay9_A Glycoprotein hormones, alpha polypeptide; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1dz7_A 1e9j_A* 1fl7_A* 1hcn_A* 1hd4_A* 1xwd_A* 1hrp_A* 1qfw_A*
Probab=87.30 E-value=0.35 Score=33.53 Aligned_cols=57 Identities=21% Similarity=0.398 Sum_probs=40.8
Q ss_pred EeeeeeeeccCcCCCcc-------CC-CCCCCCCceecCceEEEEEEeCCCCCCccCCeeeEEEeeeeceecCCCCC
Q psy1559 51 VLSCWGRCDSNETSDWR-------FP-YKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKS 119 (138)
Q Consensus 51 tt~C~G~C~T~e~p~~~-------~p-~~~~~q~vCty~~~~y~tv~L~gC~~gvdp~~~~~tYpvA~SC~C~~C~~ 119 (138)
+--|.|.|+|++.|.-. .| .+++.-..|.-+.+.++++. .+ +..-.-..|+|+.|--
T Consensus 25 iyQC~GCCFSrAYPTPlrskktM~vPKNITSEAtCCVAk~~~~vt~~-----~~-------~~v~NHT~ChCsTCyy 89 (92)
T 4ay9_A 25 ILQCMGCCFSRAYPTPLRSKKTMLVQKNVTSESTCCVAKSYNRVTVM-----GG-------FKVENHTACHCSTCYY 89 (92)
T ss_dssp CEEEEEEEEEEEEECCHHHHTTCSSCCSEEEECCEEEEEEEEEEEET-----TT-------EEEEEEEEEEEECCSS
T ss_pred eEEecceeeccccCCccchhhcccCCccccCceeEEEeecceeEEEe-----cC-------eEEeecccccccceeE
Confidence 46799999999966521 12 45677888998877777662 12 4567888999999953
No 5
>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein; 2.21A {Homo sapiens}
Probab=28.75 E-value=1.4e+02 Score=20.33 Aligned_cols=85 Identities=19% Similarity=0.320 Sum_probs=51.0
Q ss_pred cCCceeeeeeEEEEecCCCCCccee----eEEEeeeeeeeccCcCCCccC---------------CCCCCCCCceecCce
Q psy1559 23 TLDCHRRVYKYRVSQTDSLGRKCWD----DIEVLSCWGRCDSNETSDWRF---------------PYKRSHHPVCQHGAR 83 (138)
Q Consensus 23 ~~~C~~~~~t~~vek~dC~~~~C~~----~I~tt~C~G~C~T~e~p~~~~---------------p~~~~~q~vCty~~~ 83 (138)
...|.++...+..+.-+-.. |+ ..+..-|.|-|..-- +.... +.....++.|...+.
T Consensus 5 ~~~C~r~~l~VdF~dlGW~~---WIiaP~~y~a~yC~G~C~~pl-~~~~~~tnHa~vq~l~~~~~~~~~~~~pCCvPt~l 80 (110)
T 2qcq_A 5 PRNCARRYLKVDFADIGWSE---WIISPKSFDAYYCSGACQFPM-PKSLKPSNHATIQSIVRAVGVVPGIPEPCCVPEKM 80 (110)
T ss_dssp CSBSEEECCEEETTTTTCTT---TEEECSEEECCEEECBCCSSC-CGGGCCCHHHHHHHHHHHTCCSTTCCCCCEEECSE
T ss_pred CCCcEEEEEEEEeeccCCcc---eEECCCceEeEEeEeECCCCc-ccccCCChhHHHHHHHHhccCCCCCCCCcCCCeeE
Confidence 34588888777775433332 22 568899999998531 11100 112245889999888
Q ss_pred EEEEEEeCCCCCCccCCeeeEEEe--eeeceecC
Q psy1559 84 ALKVVILNNCEENVEQGTEVYRYL--EALSCKCS 115 (138)
Q Consensus 84 ~y~tv~L~gC~~gvdp~~~~~tYp--vA~SC~C~ 115 (138)
+...+.-- +++- .+.+-+|| +|.+|.|+
T Consensus 81 ~~ls~ly~--d~~~--~v~~~~~~~Mvv~~CgC~ 110 (110)
T 2qcq_A 81 SSLSILFF--DENK--NVVLKVYPNMTVESCACR 110 (110)
T ss_dssp EEEEEEEE--CTTC--CEEEEEEEEEEECCEEEC
T ss_pred ccEEEEEE--eCCC--CEEEEEcCCcEEeecccC
Confidence 87665433 1221 23344666 99999995
No 6
>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain, kazal domain, PROT complex, hormone-growth factor complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A*
Probab=28.65 E-value=1.4e+02 Score=20.40 Aligned_cols=84 Identities=13% Similarity=0.198 Sum_probs=50.3
Q ss_pred cCCceeeeeeEEEEecCCCCCccee----eEEEeeeeeeeccCcCCCc-------------------cCCCCCCCCCcee
Q psy1559 23 TLDCHRRVYKYRVSQTDSLGRKCWD----DIEVLSCWGRCDSNETSDW-------------------RFPYKRSHHPVCQ 79 (138)
Q Consensus 23 ~~~C~~~~~t~~vek~dC~~~~C~~----~I~tt~C~G~C~T~e~p~~-------------------~~p~~~~~q~vCt 79 (138)
...|.++...+..+.-+-.. |+ ..+..-|.|-|..-- ..+ ..| ....++.|.
T Consensus 8 ~~~C~r~~l~VdF~dlGW~~---WIiaP~~y~a~yC~G~C~~p~-~~~~~tn~a~~~~~i~~~~~~~~~p-~~~~~pCCv 82 (116)
T 2arp_A 8 VNICCKKQFFVSFKDIGWND---WIIAPSGYHANYCEGECPSHI-AGTSGSSLSFHSTVINHYRMRGHSP-FANLKSCCV 82 (116)
T ss_dssp -CCSEEECCEEEHHHHTCTT---TEEECSEEECCEEESCCCC----------CCHHHHHHHHTTSTTCSS-CCCCCCCEE
T ss_pred CCCceeEEEEEEhhhcCCcc---cEECCCceEeEEEeeeCCCCc-cccCCcchHHHHHHHHhhhccccCC-CCCCCCccc
Confidence 45799888777776544432 22 578899999997532 110 012 234578999
Q ss_pred cCceEEEEEEeCCCCCCccCCeeeEEEe--eeeceecC
Q psy1559 80 HGARALKVVILNNCEENVEQGTEVYRYL--EALSCKCS 115 (138)
Q Consensus 80 y~~~~y~tv~L~gC~~gvdp~~~~~tYp--vA~SC~C~ 115 (138)
..+.+...+.-- +++- .+.+-+|| +|.+|.|+
T Consensus 83 Pt~l~~ls~ly~--d~~~--~v~~~~~~~Mvv~~CgC~ 116 (116)
T 2arp_A 83 PTKLRPMSMLYY--DDGQ--NIIKKDIQNMIVEECGCS 116 (116)
T ss_dssp EEEEEEEEEEEE--CTTC--CEEEEEEEEEEEEEEEEC
T ss_pred cccCccEEEEEE--eCCC--CEEEEEcCCeEEeecccC
Confidence 877776655432 1121 23345677 99999985
No 7
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, CLE PAIR of basic residues, cytokine; HET: CIT; 2.15A {Mus musculus} SCOP: g.17.1.0 PDB: 3sek_B*
Probab=21.07 E-value=1.8e+02 Score=19.71 Aligned_cols=85 Identities=15% Similarity=0.229 Sum_probs=51.1
Q ss_pred CcCCceeeeeeEEEEecCCCCCccee----eEEEeeeeeeeccCcCCCcc--------CCCCCCCCCceecCceEEEEEE
Q psy1559 22 ITLDCHRRVYKYRVSQTDSLGRKCWD----DIEVLSCWGRCDSNETSDWR--------FPYKRSHHPVCQHGARALKVVI 89 (138)
Q Consensus 22 ~~~~C~~~~~t~~vek~dC~~~~C~~----~I~tt~C~G~C~T~e~p~~~--------~p~~~~~q~vCty~~~~y~tv~ 89 (138)
....|.++...+..+.-+= . |+ ..+..-|.|-|..--...+. .| ....++.|...+.+...+.
T Consensus 11 ~~~~C~r~~l~V~F~dlGW---d-WIiaP~~y~a~yC~G~C~~p~~~~~~h~~l~~~~~p-~~~~~pCCvPt~l~~ls~l 85 (109)
T 3hh2_A 11 TESRCCRYPLTVDFEAFGW---D-WIIAPKRYKANYCSGECEFVFLQKYPHTHLVHQANP-RGSAGPCCTPTKMSPINML 85 (109)
T ss_dssp CCCBSEEECCEEEHHHHTC---T-TEEECSEEECCEEECBCCTTTTCCCHHHHHHHHHCC-TTCCCCCEEEEEEEEEEEE
T ss_pred CCCCcEEEEEEEeHHHcCC---C-eEeCCCcccceeecccCCCcccccCchhhhhhhcCc-ccCCCceEeeeeeccEEEE
Confidence 3467999887776654322 2 42 56899999999753111110 11 1356899998777766655
Q ss_pred eCCCCCCccCCeeeEEEe--eeeceecC
Q psy1559 90 LNNCEENVEQGTEVYRYL--EALSCKCS 115 (138)
Q Consensus 90 L~gC~~gvdp~~~~~tYp--vA~SC~C~ 115 (138)
-- +.+-+ +.+-+|+ +|.+|.|+
T Consensus 86 y~--d~~~~--v~~~~~~~Mvv~~CgCs 109 (109)
T 3hh2_A 86 YF--NGKEQ--IIYGKIPAMVVDRCGCS 109 (109)
T ss_dssp EE--CTTCC--EEEEEEEEEEEEEEEEC
T ss_pred EE--eCCCC--EEEEEcCCeEEeeeEeC
Confidence 43 11112 2234566 99999996
No 8
>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth factor, sulfates, hormone/growth factor complex; 1.55A {Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C*
Probab=18.87 E-value=2.4e+02 Score=19.54 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=53.3
Q ss_pred CcCCceeeeeeEEEEecCCCCCcceeeEEEeeeeeeeccCcCCCcc-------------CC--CCCCCCCceecCceEEE
Q psy1559 22 ITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWR-------------FP--YKRSHHPVCQHGARALK 86 (138)
Q Consensus 22 ~~~~C~~~~~t~~vek~dC~~~~C~~~I~tt~C~G~C~T~e~p~~~-------------~p--~~~~~q~vCty~~~~y~ 86 (138)
....|.++...+.++.-+=+.-. -..++..-|.|-|.... ..+- .| -....++.|.....+..
T Consensus 12 ~~~~C~l~~l~V~f~dLGw~~~a-p~~y~a~yC~G~C~~~~-tnHa~vl~~l~~~~~~~~p~~~~~~~~PCCvPt~~~~i 89 (113)
T 2ask_A 12 GARGCRLRSQLVPVRALGLGHRS-DELVRFRFCSGSCRRAR-SPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRYEAV 89 (113)
T ss_dssp -CCBSEEEEEEEEGGGGSSSCCC-CCEEEEEEEECBCGGGC-CHHHHHHHHHHHHTCSCCCSSSCCCSSCEEEEEEEEEE
T ss_pred CCCCceeEEEEEEHHHcCCCccC-cCeeeeeeeeeeCCCCC-CcHHHHHHHHHHhccccCcccCCCCCCCCccCceecce
Confidence 45679999988888654433210 02567899999997643 1111 11 13456899998777755
Q ss_pred EEEeCCCCCCccCCeeeEEEeeeeceecC
Q psy1559 87 VVILNNCEENVEQGTEVYRYLEALSCKCS 115 (138)
Q Consensus 87 tv~L~gC~~gvdp~~~~~tYpvA~SC~C~ 115 (138)
.+ | +. +-..+.|.=.+|.+|.|.
T Consensus 90 S~-L---d~--~v~~k~~~~Mva~~CgC~ 112 (113)
T 2ask_A 90 SF-M---DV--NSTWRTVDRLSATACGCL 112 (113)
T ss_dssp EE-E---CT--TSCEEEEEEEEEEEEEEE
T ss_pred EE-E---cC--ceeeeecCCcEEeecccC
Confidence 55 3 22 334556666799999983
No 9
>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily, ligand-receptor complex, hormone/growth factor complex; 1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A 3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A
Probab=17.60 E-value=2.5e+02 Score=19.16 Aligned_cols=85 Identities=15% Similarity=0.312 Sum_probs=51.0
Q ss_pred CcCCceeeeeeEEEEecCCCCCcce----eeEEEeeeeeeeccCcCCCc--------------cCCCCCCCCCceecCce
Q psy1559 22 ITLDCHRRVYKYRVSQTDSLGRKCW----DDIEVLSCWGRCDSNETSDW--------------RFPYKRSHHPVCQHGAR 83 (138)
Q Consensus 22 ~~~~C~~~~~t~~vek~dC~~~~C~----~~I~tt~C~G~C~T~e~p~~--------------~~p~~~~~q~vCty~~~ 83 (138)
....|.++...+..+.-+-.. | ...+..-|.|-|..--...+ ..| ...++.|...+.
T Consensus 10 ~~~~C~r~~l~VdF~dlGW~~---WIiaP~gy~a~yC~G~C~~p~~~~~~~tnHaivq~l~~~~~~--~~~~pCCvPt~l 84 (114)
T 2h62_A 10 LKSSCKRHPLYVDFSDVGWND---WIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNS--KIPKACCVPTEL 84 (114)
T ss_dssp -CCBSEEECCEEEHHHHTCTT---TEEECSEEECCEEECBCCSSCCTTSEECHHHHHHHHHHHHCT--TSCCCCEEEEEE
T ss_pred CCCCceeEEEEEEeeecCCcc---cEEcCCceEeEeeeeECCCCcccccCCchHHHHHHHHHhcCC--CCCCCcccceee
Confidence 346798888777775434332 1 15688999999986421110 012 245789998887
Q ss_pred EEEEEEeCCCCCCccCCeeeEEEe--eeeceecC
Q psy1559 84 ALKVVILNNCEENVEQGTEVYRYL--EALSCKCS 115 (138)
Q Consensus 84 ~y~tv~L~gC~~gvdp~~~~~tYp--vA~SC~C~ 115 (138)
+...+.-- +++ ..+.+-+|| +|.+|.|+
T Consensus 85 ~~is~ly~--d~~--~~v~~~~~~~Mvv~~CgC~ 114 (114)
T 2h62_A 85 SAISMLYL--DEN--EKVVLKNYQDMVVEGCGCR 114 (114)
T ss_dssp EEEEEEEE--CTT--SCEEEEEEEEEEEEEEEEC
T ss_pred ccEEEEEE--eCC--CCEEEEEcCCeEEecccCC
Confidence 76655432 121 122234566 99999985
No 10
>2kcn_A Antifungal protein; NMR {Penicillium chrysogenum}
Probab=17.20 E-value=41 Score=21.12 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=24.8
Q ss_pred CCCceecCceEEEEEEeCCCCCCccCCeeeEEEeeeeceecCCCCCCCCccccccCCcCC
Q psy1559 74 HHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSYN 133 (138)
Q Consensus 74 ~q~vCty~~~~y~tv~L~gC~~gvdp~~~~~tYpvA~SC~C~~C~~~~tdC~~~~~~~~~ 133 (138)
.|+.|+|..-.=++... .||.-+| ..|.+|..+|+ +|||+
T Consensus 10 ~~n~CkY~~~~GK~~i~-kC~~~aN----------------~kC~kD~n~C~---yD~~~ 49 (55)
T 2kcn_A 10 SKNECKYKNDAGKDTFI-KCPKFDN----------------KKCTKDNNKCT---VDTYN 49 (55)
T ss_dssp SCCEEEEEETTTEEEEE-ECSCTTT----------------CCCCSTTCCEE---EETTT
T ss_pred cccEEEEecCCCcEeEE-eCcchhc----------------cccCCCCCcce---eeccC
Confidence 46778874332222222 4777544 36899999999 67775
Done!