RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1559
         (138 letters)



>1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo
           sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B*
          Length = 145

 Score = 53.1 bits (127), Expect = 5e-10
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 49  IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 108
           +    C G C +      +         VC +     + + L  C   V     V  Y  
Sbjct: 29  VNTTICAGYCPTMT-RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVN---PVVSYAV 84

Query: 109 ALSCKCSVCKSSEASCEGLR 128
           ALSC+C++C+ S   C G +
Sbjct: 85  ALSCQCALCRRSTTDCGGPK 104


>4ay9_B Follitropin subunit beta; hormone-receptor complex, leucine-rich
           repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens}
           PDB: 1xwd_B* 1fl7_B*
          Length = 111

 Score = 51.5 bits (123), Expect = 1e-09
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 4/80 (5%)

Query: 49  IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 108
           I    C G C + +   ++ P +      C       + V +  C  + +    +Y Y  
Sbjct: 23  INTTWCAGYCYTRD-LVYKDPARPKIQKTCTFKELVYETVRVPGCAHHAD---SLYTYPV 78

Query: 109 ALSCKCSVCKSSEASCEGLR 128
           A  C C  C S    C    
Sbjct: 79  ATQCHCGKCDSDSTDCTVRG 98


>2apl_A Hypothetical protein PG0816; structural genomics, PSI, protein
           initiative, midwest center for structural genomics,
           MCSG, U function; 2.01A {Porphyromonas gingivalis} SCOP:
           a.258.1.1
          Length = 157

 Score = 25.8 bits (56), Expect = 4.9
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 16/74 (21%)

Query: 70  YKRSHHPVCQH-----GARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASC 124
           Y   H P          AR+ +   L    + V QG   + + EA S       +SE   
Sbjct: 19  YLNEHFPEMSGNNPFITARSDEA--LTAYCDAVAQG---FSHPEAES------MASEVLY 67

Query: 125 EGLRYSSYNSLNMI 138
           +GL +S Y++L  +
Sbjct: 68  QGLHFSRYDTLVSV 81


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.133    0.436 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,058,521
Number of extensions: 107587
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 10
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.2 bits)