RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1559
         (138 letters)



>d1xwdb1 g.17.1.4 (B:3-107) Follicle stimulating hormone,
           follitropin, beta chain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 105

 Score = 67.1 bits (164), Expect = 3e-16
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 49  IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 108
           I    C G C + +   ++ P +      C       + V +  C  + +    +Y Y  
Sbjct: 21  INTTWCAGYCYTRDLV-YKDPARPKIQKTCTFKELVYETVRVPGCAHHAD---SLYTYPV 76

Query: 109 ALSCKCSVCKSSEASCE 125
           A  C C  C S    C 
Sbjct: 77  ATQCHCGKCDSDSTDCT 93


>d1hcnb_ g.17.1.4 (B:) Gonadotropin B chain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 110

 Score = 67.2 bits (164), Expect = 4e-16
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 49  IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 108
           +    C G C +      +         VC +     + + L  C   V     V  Y  
Sbjct: 28  VNTTICAGYCPTMT-RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVN---PVVSYAV 83

Query: 109 ALSCKCSVCKSSEASCEGLR 128
           ALSC+C++C+ S   C G +
Sbjct: 84  ALSCQCALCRRSTTDCGGPK 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.133    0.436 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 527,667
Number of extensions: 23656
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 7
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.6 bits)