BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15590
(217 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R9J9|TPPC4_PONAB Trafficking protein particle complex subunit 4 OS=Pongo abelii
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 266 bits (679), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 120/213 (56%), Positives = 162/213 (76%)
Query: 1 MVIYGVYIVSKSGGLIFNYDHNVPKIENAVTFQFPLNIKLTPENKKIVVSFGQRDGILVG 60
M I+ VY+V+K+GGLI+ D P+ E TF +PL++ L +++++V+FGQRDGI VG
Sbjct: 1 MAIFSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVG 60
Query: 61 HVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFA 120
H + A+N + DG +VLE+L P ++PV + F RPR+T+NEK+ LASMF+ LFA
Sbjct: 61 HAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFA 120
Query: 121 IASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADY 180
I SQLSPE SSGIE+LE DTFKLHCYQTLTG+KF+++ D Q+G+D +L+KIYE+Y+D+
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180
Query: 181 ALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 213
ALKNPFYSLEMPIRCELFD +L+ L+ EK G
Sbjct: 181 ALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213
>sp|Q9Y296|TPPC4_HUMAN Trafficking protein particle complex subunit 4 OS=Homo sapiens
GN=TRAPPC4 PE=1 SV=1
Length = 219
Score = 266 bits (679), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 120/213 (56%), Positives = 162/213 (76%)
Query: 1 MVIYGVYIVSKSGGLIFNYDHNVPKIENAVTFQFPLNIKLTPENKKIVVSFGQRDGILVG 60
M I+ VY+V+K+GGLI+ D P+ E TF +PL++ L +++++V+FGQRDGI VG
Sbjct: 1 MAIFSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVG 60
Query: 61 HVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFA 120
H + A+N + DG +VLE+L P ++PV + F RPR+T+NEK+ LASMF+ LFA
Sbjct: 61 HAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFA 120
Query: 121 IASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADY 180
I SQLSPE SSGIE+LE DTFKLHCYQTLTG+KF+++ D Q+G+D +L+KIYE+Y+D+
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180
Query: 181 ALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 213
ALKNPFYSLEMPIRCELFD +L+ L+ EK G
Sbjct: 181 ALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213
>sp|Q9ES56|TPPC4_MOUSE Trafficking protein particle complex subunit 4 OS=Mus musculus
GN=Trappc4 PE=1 SV=1
Length = 219
Score = 266 bits (679), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 119/213 (55%), Positives = 163/213 (76%)
Query: 1 MVIYGVYIVSKSGGLIFNYDHNVPKIENAVTFQFPLNIKLTPENKKIVVSFGQRDGILVG 60
M I+ VY+V+K+GGLI+ +D P+ E TF +PL++ L +++++V+FGQRDGI VG
Sbjct: 1 MAIFSVYVVNKAGGLIYQWDSYSPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVG 60
Query: 61 HVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFA 120
H + A+N + DG +VLE+L P ++PV + F RPR+T+NEK+ LASMF+ LFA
Sbjct: 61 HAVLAINGMDVNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFA 120
Query: 121 IASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADY 180
I SQLSPE SSGIE+LE DTFKLHC+QTLTG+KF+++ D Q+G+D +L+KIYE+Y+D+
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180
Query: 181 ALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 213
ALKNPFYSLEMPIRCELFD +L+ L+ EK G
Sbjct: 181 ALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213
>sp|Q2TBL9|TPPC4_BOVIN Trafficking protein particle complex subunit 4 OS=Bos taurus
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 264 bits (675), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 119/213 (55%), Positives = 162/213 (76%)
Query: 1 MVIYGVYIVSKSGGLIFNYDHNVPKIENAVTFQFPLNIKLTPENKKIVVSFGQRDGILVG 60
M I+ VY+V+K+GGLI+ D P+ E TF +PL++ L +++++V+FGQRDGI VG
Sbjct: 1 MAIFSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVG 60
Query: 61 HVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFA 120
H + A+N + DG +VLE+L P ++PV + F RPR+T+NEK+ LASMF+ LFA
Sbjct: 61 HAVLAINGVDVNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFA 120
Query: 121 IASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADY 180
I SQLSPE SSGIE+LE DTFKLHC+QTLTG+KF+++ D Q+G+D +L+KIYE+Y+D+
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180
Query: 181 ALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 213
ALKNPFYSLEMPIRCELFD +L+ L+ EK G
Sbjct: 181 ALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213
>sp|Q69BT7|TPPC4_RAT Trafficking protein particle complex subunit 4 OS=Rattus norvegicus
GN=Trappc4 PE=2 SV=1
Length = 219
Score = 259 bits (663), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 117/213 (54%), Positives = 161/213 (75%)
Query: 1 MVIYGVYIVSKSGGLIFNYDHNVPKIENAVTFQFPLNIKLTPENKKIVVSFGQRDGILVG 60
M I+ VY+V+K+GGLI+ +D P+ E TF +PL++ L +++++V+FGQRDGI VG
Sbjct: 1 MAIFSVYVVNKAGGLIYQWDSYSPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVG 60
Query: 61 HVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFA 120
H + A+N + DG +VLE+ ++PV + F RPR+T+NEK+ LASMF+ LFA
Sbjct: 61 HAVLAINGMDVNGKYTADGKEVLEYPGNSANYPVSIRFGRPRLTSNEKLMLASMFHSLFA 120
Query: 121 IASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADY 180
I SQLSPE SSGIE+LE DTFKLHC+QTLTG+KF+++ D Q+G+D +L+KIYE+Y+D+
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180
Query: 181 ALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 213
ALKNPFYSLEMPIRCELFD +L+ L+ EK G
Sbjct: 181 ALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213
>sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4 OS=Dictyostelium
discoideum GN=trappc4 PE=3 SV=1
Length = 135
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Query: 102 RMTTNEKIFLASMFYPLFAIASQLSP-EPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGD 160
+++ N I L S F+ L AIAS LSP SSGIEV+E + FKL C+QT TG+KF ++ D
Sbjct: 26 KLSHNSYIRLGSTFHSLHAIASNLSPVSGSSSGIEVIETEAFKLQCFQTHTGIKFYVIAD 85
Query: 161 TNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLL 206
N L+ +L +YELY DY LKNPFY +EM IRC+LFD L LL
Sbjct: 86 PNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDLFDYKLNRLL 131
>sp|O43041|TRS23_SCHPO Transport protein particle subunit trs23 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs23 PE=3 SV=1
Length = 132
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 75/107 (70%)
Query: 103 MTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTN 162
+T NE + LA + + AI++Q+SP P SSGI++LEA TF +H QT TG+KF++ +
Sbjct: 26 LTPNEYLVLAGTIHGVHAISTQISPLPGSSGIQLLEAGTFNMHILQTHTGMKFVLFTEKK 85
Query: 163 QSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 209
+ L L+K YELY+DY LKNPFY+LEMPI+C+LFD L+ + H
Sbjct: 86 TTNARLQLQKFYELYSDYVLKNPFYTLEMPIKCQLFDEQLKRYIDSH 132
>sp|Q03784|TRS23_YEAST Trafficking protein particle complex subunit 23 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS23 PE=1
SV=1
Length = 219
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 108/248 (43%), Gaps = 73/248 (29%)
Query: 1 MVIYGVYIVSKSGGLIF--NYDHNVPKIEN------AVTFQ--FPLNIKLTPENKKIVVS 50
M I + +++KSGGLI+ N+ ++ K+ + A T F + +LTP+ ++
Sbjct: 1 MAIETILVINKSGGLIYQRNFTNDEQKLNSNEYLILASTLHGVFAIASQLTPKALQLTQQ 60
Query: 51 FGQRDGI-LVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKI 109
+ I + +V + N + +NG ++ + T NEK+
Sbjct: 61 TNIENTIPYIPYVGMSSNRSDTRNGGGNNN----------------------KHTNNEKL 98
Query: 110 --FLASMFYPLFAIASQLSPEP----KSSGIEVLEADTFKLHCYQTLTGVKFMIVGDT-- 161
F F+ EP SG+ L D F + YQTLTG+KF+ + +
Sbjct: 99 GSFKGDDFFK----------EPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVM 148
Query: 162 -----------------NQSGL-----DLILKKIYELYADYALKNPFYSLEMPIRCELFD 199
+ S L D L+K+Y LY+DY +K+P YS+EMPIR LFD
Sbjct: 149 PQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFD 208
Query: 200 THLQNLLQ 207
++ +++
Sbjct: 209 EKVKKMVE 216
>sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1 OS=Dictyostelium
discoideum GN=trappc1-1 PE=3 SV=1
Length = 142
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 105 TNEKIFLASMFYPLFAIASQLSPEP--KSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTN 162
+ ++ L M Y L A + SP+ +G + T+KLH Y+TL+ +KF+I+ D N
Sbjct: 30 SEDQKLLFGMLYSLKAFITSSSPKKIDDKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPN 89
Query: 163 QSGLDLILKKIY-ELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 208
L LKKIY +++ +Y +KNP Y ++C+ F L L+Q
Sbjct: 90 VPDLRDDLKKIYSQIFVEYVIKNPIYKHGTTVKCDTFINQLNLYLKQ 136
>sp|Q2KMM2|TPPC1_RAT Trafficking protein particle complex subunit 1 OS=Rattus norvegicus
GN=Trappc1 PE=2 SV=1
Length = 145
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 107 EKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGL 166
E + M + + + S++SP G + +KLH Y+T TG+K ++ D +
Sbjct: 34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 167 DLILKKIYE-LYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 207
+L IY LY ++ +KNP L ++ ELF + L + ++
Sbjct: 94 RDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVR 135
>sp|Q5NCF2|TPPC1_MOUSE Trafficking protein particle complex subunit 1 OS=Mus musculus
GN=Trappc1 PE=1 SV=1
Length = 145
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 107 EKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGL 166
E + M + + + S++SP G + +KLH Y+T TG+K ++ D +
Sbjct: 34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 167 DLILKKIYE-LYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 207
+L IY LY ++ +KNP L ++ ELF + L + ++
Sbjct: 94 RDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVR 135
>sp|Q9Y5R8|TPPC1_HUMAN Trafficking protein particle complex subunit 1 OS=Homo sapiens
GN=TRAPPC1 PE=1 SV=1
Length = 145
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 107 EKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGL 166
E + M + + + S++SP G + +KLH Y+T TG+K ++ D +
Sbjct: 34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 167 DLILKKIYE-LYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 207
+L IY LY + +KNP L ++ ELF + L + ++
Sbjct: 94 RDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVR 135
>sp|Q17QI1|TPPC1_BOVIN Trafficking protein particle complex subunit 1 OS=Bos taurus
GN=TRAPPC1 PE=2 SV=1
Length = 145
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 107 EKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGL 166
E + M + + + S++SP G + +KLH Y+T TG+K ++ D +
Sbjct: 34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 167 DLILKKIYE-LYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 207
+L IY LY + +KNP L ++ ELF + L + ++
Sbjct: 94 RDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVR 135
>sp|Q08CN0|TPPC2_DANRE Trafficking protein particle complex subunit 2 OS=Danio rerio
GN=trappc2 PE=2 SV=1
Length = 140
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 146 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 204
+ T ++F+++ D Q G+ +Y+LY +A+ NPFY + PIR F+ +Q
Sbjct: 74 AFVTAGHMRFIMLHDVRQEDGIKNFFNDVYDLYVKFAM-NPFYEVNAPIRSTAFERKVQF 132
Query: 205 LLQQH 209
L ++H
Sbjct: 133 LGKKH 137
>sp|Q5ZKP4|TPPC2_CHICK Trafficking protein particle complex subunit 2 OS=Gallus gallus
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 146 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 204
+ + ++F+++ D Q G+ +Y+LY +A+ NPFY L PIR F+ +Q
Sbjct: 74 AFAFVLHMRFIMLHDVRQEDGIKNFFNDVYDLYIKFAM-NPFYELNSPIRSSAFERKVQF 132
Query: 205 LLQQH 209
L ++H
Sbjct: 133 LGKKH 137
>sp|Q9CQP2|TPPC2_MOUSE Trafficking protein particle complex subunit 2 OS=Mus musculus
GN=Trappc2 PE=1 SV=1
Length = 140
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 146 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 204
+ T ++F+++ D Q G+ +Y+LY +A+ NPFY PIR FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQF 132
Query: 205 LLQQH 209
L ++H
Sbjct: 133 LGKKH 137
>sp|F1SRI0|TPPC2_PIG Trafficking protein particle complex subunit 2 OS=Sus scrofa
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 146 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 204
+ T ++F+++ D Q G+ +Y+LY +A+ NPFY PIR FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQF 132
Query: 205 LLQQH 209
L ++H
Sbjct: 133 LGKKH 137
>sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2 OS=Bos taurus
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 146 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 204
+ T ++F+++ D Q G+ +Y+LY +A+ NPFY PIR FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQF 132
Query: 205 LLQQH 209
L ++H
Sbjct: 133 LGKKH 137
>sp|Q28IG8|TPPC2_XENTR Trafficking protein particle complex subunit 2 OS=Xenopus
tropicalis GN=trappc2 PE=2 SV=1
Length = 140
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 146 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 204
+ T ++F+++ D Q G+ + Y+LY +A+ NPFY + P+R FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDVRQEDGIKNFFNEAYDLYIKFAM-NPFYEINSPLRSTAFDRKIQF 132
Query: 205 LLQQH 209
L ++H
Sbjct: 133 LGKKH 137
>sp|E2QV03|TPPC2_CANFA Trafficking protein particle complex subunit 2 OS=Canis familiaris
GN=TRAPPC2 PE=3 SV=1
Length = 140
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 146 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 204
+ T ++F+++ D Q G+ +Y+LY +A+ NPFY PIR FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQF 132
Query: 205 LLQQH 209
L ++H
Sbjct: 133 LGKKH 137
>sp|P38334|TRS20_YEAST Trafficking protein particle complex subunit 20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS20 PE=1
SV=1
Length = 175
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 146 CYQTLTGVKF-MIVGDTNQSGLDL-------ILKKIYELYADYALKNPFYSLEMPIRCEL 197
Y + +G+KF MI G++ S + + ++++ELY L NPFY + PIR
Sbjct: 102 AYISYSGMKFVMIHGNSANSSVVIDDNNMRSFYQEVHELYVK-TLMNPFYKITDPIRSPA 160
Query: 198 FDTHLQNLLQQH 209
FD+ ++ L ++H
Sbjct: 161 FDSRVRTLARKH 172
>sp|Q5RES6|TPPC2_PONAB Trafficking protein particle complex subunit 2 OS=Pongo abelii
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 146 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 204
+ T ++F+++ D Q G+ +Y+LY +++ NPFY PIR FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPIRSSAFDRKVQF 132
Query: 205 LLQQH 209
L ++H
Sbjct: 133 LGKKH 137
>sp|P0DI82|TPC2B_HUMAN Trafficking protein particle complex subunit 2 protein TRAPPC2P1
OS=Homo sapiens GN=TRAPPC2P1 PE=1 SV=1
Length = 140
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 146 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 204
+ T ++F+++ D Q G+ +Y+LY +++ NPFY PIR FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPIRSSAFDRKVQF 132
Query: 205 LLQQH 209
L ++H
Sbjct: 133 LGKKH 137
>sp|P0DI81|TPC2A_HUMAN Trafficking protein particle complex subunit 2 OS=Homo sapiens
GN=TRAPPC2 PE=1 SV=1
Length = 140
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 146 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 204
+ T ++F+++ D Q G+ +Y+LY +++ NPFY PIR FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPIRSSAFDRKVQF 132
Query: 205 LLQQH 209
L ++H
Sbjct: 133 LGKKH 137
>sp|Q9UT70|BET5_SCHPO Transport protein particle subunit bet5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=bet5 PE=3 SV=2
Length = 155
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 142 FKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIY-ELYADYALKNPFYSLEMP------IR 194
+KLH Y+T T ++ + + + L +L++IY LY ++ +K+P Y+ P I
Sbjct: 78 YKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFVVKHPLYTHVPPSAEEGGIN 137
Query: 195 CELFDTHLQNLLQ 207
CE+F L ++
Sbjct: 138 CEIFRITLDRFVR 150
>sp|Q03630|BET5_YEAST Trafficking protein particle complex subunit BET5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET5 PE=1
SV=1
Length = 159
Score = 37.0 bits (84), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 111 LASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLIL 170
L M + L +I +LS + I + +++H Y T +G+ F+++ D Q +L
Sbjct: 44 LYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVL 103
Query: 171 KKIY-ELYADYALKN 184
+ IY +Y Y N
Sbjct: 104 QYIYSHIYVKYVSNN 118
>sp|Q9USZ5|TRS20_SCHPO Transport protein particle 20 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs20 PE=3 SV=1
Length = 136
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 146 CYQTLTGVKFMIVGDTNQSG--LDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQ 203
Y T + ++FM++ NQS + L ++++ELY L +PFY PIR + FD ++
Sbjct: 72 AYVTPSNMRFMLLHQ-NQSADNIKLFFQELHELYIK-TLMSPFYQPNQPIRSQAFDLKVR 129
Query: 204 NLLQQH 209
++ +++
Sbjct: 130 SIARRY 135
>sp|D3ZVF4|TPPC2_RAT Trafficking protein particle complex subunit 2 OS=Rattus norvegicus
GN=Trappc2 PE=3 SV=1
Length = 140
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 146 CYQTLTGVKFMIVGDTNQS-GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 204
+ T ++ +++ D Q G+ +Y+LY +A+ NPFY PIR F+ +Q
Sbjct: 74 AFVTAGHMRLIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSTAFERKVQF 132
Query: 205 LLQQH 209
L ++H
Sbjct: 133 LGKKH 137
>sp|P04157|PTPRC_RAT Receptor-type tyrosine-protein phosphatase C OS=Rattus norvegicus
GN=Ptprc PE=2 SV=2
Length = 1273
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 70 VIKNGQLDDGTDVLEFLSKPES--FPVKLT-FTRPRMTTNEKIFLASMFYPLFA--IASQ 124
V G DDG D E + P++ P + T FT P ++ + + P F+ +
Sbjct: 21 VTGQGTTDDGLDTTEIVLLPQTDPLPARTTEFTPPSISERGNGSSETTYLPGFSSTLMPH 80
Query: 125 LSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGL 166
L+P+P S ADT L LT + G+T+ G+
Sbjct: 81 LTPQPDSQTPSARGADTQTLSSQADLTTLTAAPSGETDPPGV 122
>sp|Q5M8X5|TPC2L_XENTR Trafficking protein particle complex subunit 2-like protein
OS=Xenopus tropicalis GN=trappc2l PE=2 SV=1
Length = 139
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 140 DTFKLHCYQTLTGVKFMIVGDTNQSGLD-----LILKKIYELYADYALKNPFYSLEMPIR 194
+ +K++ Y T + VKF++V D++ + L + +K++ Y D + NPFY+ PI+
Sbjct: 65 EDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSMFRKLHNSYTD-VMCNPFYNPGDPIQ 123
Query: 195 CELFDTHLQNLL 206
FD + +++
Sbjct: 124 SRAFDNTVTSMM 135
>sp|B5FXJ6|TPC2L_TAEGU Trafficking protein particle complex subunit 2-like protein
OS=Taeniopygia guttata GN=TRAPPC2L PE=2 SV=1
Length = 139
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 140 DTFKLHCYQTLTGVKFMIVGDTNQSGLD-----LILKKIYELYADYALKNPFYSLEMPIR 194
+ +K++ Y T + VKF++V D++ + L + +K++ Y D + NPFY+ I
Sbjct: 65 EDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTD-IMCNPFYNPGDRIH 123
Query: 195 CELFDTHLQNLLQQ 208
FDT + +++ Q
Sbjct: 124 SRAFDTMVNSMMMQ 137
>sp|B2RYU6|TPC2L_RAT Trafficking protein particle complex subunit 2-like protein
OS=Rattus norvegicus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 140 DTFKLHCYQTLTGVKFMIVGDTNQSGLD-----LILKKIYELYADYALKNPFYSLEMPIR 194
+ +K++ Y T + VKF++V D++ + L + +K++ Y D + NPFY+ I+
Sbjct: 65 EDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTD-VMCNPFYNPGDRIQ 123
Query: 195 CELFDTHLQNLLQQ 208
FDT + +++ Q
Sbjct: 124 SRAFDTMVTSMMVQ 137
>sp|Q9JME7|TPC2L_MOUSE Trafficking protein particle complex subunit 2-like protein OS=Mus
musculus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 140 DTFKLHCYQTLTGVKFMIVGDTNQSGLD-----LILKKIYELYADYALKNPFYSLEMPIR 194
+ +K++ Y T + VKF++V D++ + L + +K++ Y D + NPFY+ I+
Sbjct: 65 EDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTD-VMCNPFYNPGDRIQ 123
Query: 195 CELFDTHLQNLLQQ 208
FDT + +++ Q
Sbjct: 124 SRAFDTMVTSMMIQ 137
>sp|O94350|CBL_SCHPO Cystathionine beta-lyase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=str3 PE=3 SV=4
Length = 390
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 131 SSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLE 190
+S + + ++ TFK C + + + G+ +S L + L K+ + + N +L+
Sbjct: 25 ASSVPIYQSATFKQPCLEHMGKFDYTRSGNPTRSVLQVHLAKLMKAKHAFVTSNGMSALD 84
Query: 191 MPIRCELFDTHL 202
M +RC ++H+
Sbjct: 85 MILRCCKSNSHV 96
>sp|Q9ENK7|VP10_CTFVL Microtubule-associated protein VP10 OS=Colorado tick fever virus
(strain USA/Florio N-7180) PE=3 SV=1
Length = 605
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 123 SQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYAL 182
S+LS G VL++DT+ G +V D + GLD LKK L D
Sbjct: 392 SRLSKIFSELGYNVLDSDTY---------GKVLTLVADRGEDGLDDALKKFVRLTPDERK 442
Query: 183 KNP-FYSLEMPIRCELFDTH 201
P + EM CE+F +
Sbjct: 443 AVPSIFETEMDRLCEVFGSR 462
>sp|O64405|TPSD5_ABIGR Gamma-humulene synthase OS=Abies grandis GN=ag5 PE=1 SV=1
Length = 593
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 55 DGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASM 114
+ I GHV T D + NG + G VL + P+ L + E+IFL S
Sbjct: 424 EWIATGHVPTF--DEYLNNGTPNTGMCVLNLI------PLLLMGEHLPIDILEQIFLPSR 475
Query: 115 FYPLFAIASQLSPEPKSSGIEVLEADTFKLHCY 147
F+ L +AS+L + + E D + CY
Sbjct: 476 FHHLIELASRLVDDARDFQAEKDHGDLSCIECY 508
>sp|Q6A9P7|SEPF_PROAC Cell division protein SepF OS=Propionibacterium acnes (strain
KPA171202 / DSM 16379) GN=sepF PE=3 SV=1
Length = 172
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 8 IVSKSGGLIFNYDHNVPKIENAVTFQFPLNIKLTPENKKIVVSFG 52
+V + GLIF + ++ + V P N+ +TPE+K + S G
Sbjct: 123 LVDFAAGLIFGLRGTIERVTSKVFLLCPRNVNVTPEDKARIASGG 167
>sp|Q8C0S4|TT21A_MOUSE Tetratricopeptide repeat protein 21A OS=Mus musculus GN=Ttc21a PE=1
SV=2
Length = 1314
Score = 30.4 bits (67), Expect = 10.0, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 49 VSFGQRDG-ILVGHV-LTAVNDAVIKNG--QLDDGT----DVLEFLSKPESFPVKLTFTR 100
VS G ++G +L G V LT+ V+K L+ GT DVL + K F + F+
Sbjct: 139 VSSGSKEGYVLKGWVDLTSSKPHVVKKSIKYLEQGTQDTKDVLGLMGKATYFMTQQNFSG 198
Query: 101 PRMTTNEKIFLASMFYPLFA------IASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVK 154
N+ S F P +A Q + +G +LE D + +Q L +
Sbjct: 199 ALEVANQVTLACSNFLPALVLKMKLFLARQDWDQTIETGQRILEKDENNIDAWQILAVHE 258
Query: 155 FMIVGDTNQSG 165
+ G+T+++
Sbjct: 259 LVKEGNTDRAA 269
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,666,700
Number of Sequences: 539616
Number of extensions: 3282643
Number of successful extensions: 7609
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 7580
Number of HSP's gapped (non-prelim): 46
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)