Query psy15590
Match_columns 217
No_of_seqs 176 out of 529
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 16:29:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3t_D Trafficking protein par 100.0 7.3E-80 2.5E-84 533.2 21.8 217 1-217 1-217 (219)
2 2j3t_C Trafficking protein par 100.0 7.6E-45 2.6E-49 295.8 14.4 106 105-210 32-138 (145)
3 3cue_A Transport protein parti 100.0 4.1E-44 1.4E-48 309.4 17.1 135 1-210 1-219 (219)
4 3cue_C Transport protein parti 100.0 6.9E-44 2.4E-48 294.6 11.5 143 1-210 1-157 (159)
5 2j3w_A Sedlin, trafficking pro 100.0 3.1E-34 1.1E-38 232.0 15.9 101 107-210 35-140 (142)
6 3pr6_A Trapp-associated protei 99.7 4E-16 1.4E-20 129.5 12.1 105 86-191 15-134 (162)
7 2nut_C Vesicle-trafficking pro 95.2 0.23 7.7E-06 40.9 11.2 91 118-212 38-130 (196)
8 3bw6_A Synaptobrevin homolog Y 94.4 0.16 5.4E-06 40.2 7.9 88 117-212 47-139 (144)
9 3kyq_A YKT6, synaptobrevin hom 93.3 0.3 1E-05 40.9 8.0 88 116-211 43-133 (199)
10 4b93_A Vesicle-associated memb 91.6 1.6 5.5E-05 35.8 10.2 88 120-212 32-121 (189)
11 2vgl_S AP-2 complex subunit si 86.6 7.4 0.00025 30.0 10.3 46 135-181 48-95 (142)
12 1r6j_A Syntenin 1; PDZ, membra 86.6 0.13 4.6E-06 37.1 0.1 41 53-97 37-77 (82)
13 2vx8_A Nucleoporin-like protei 85.7 2.9 9.9E-05 34.0 7.7 58 118-179 72-131 (169)
14 1wi4_A Synip, syntaxin binding 84.3 0.32 1.1E-05 36.0 1.2 46 53-101 55-104 (109)
15 2vsp_A PDZ domain-containing p 83.7 0.45 1.5E-05 33.6 1.7 45 53-101 41-85 (91)
16 2he4_A Na(+)/H(+) exchange reg 83.7 0.52 1.8E-05 33.0 2.1 45 53-101 42-86 (90)
17 4afi_A AP-3 complex subunit de 82.4 15 0.00053 29.8 10.7 86 119-211 83-172 (173)
18 1kwa_A Hcask/LIN-2 protein; PD 82.3 0.4 1.4E-05 34.0 1.0 45 53-101 39-84 (88)
19 1w63_Q Adapter-related protein 79.7 21 0.0007 28.1 11.4 46 135-181 48-95 (158)
20 3e17_A Tight junction protein 79.4 0.51 1.7E-05 33.4 0.7 45 53-101 35-80 (88)
21 2dls_A PDZ-rhogef, RHO guanine 78.1 1.4 4.8E-05 31.2 2.7 44 53-101 43-86 (93)
22 2v90_A PDZ domain-containing p 77.4 0.89 3E-05 32.2 1.5 45 53-101 44-88 (96)
23 2vz5_A TAX1-binding protein 3; 77.3 0.79 2.7E-05 35.5 1.3 46 53-101 78-123 (139)
24 2rcz_A Tight junction protein 77.0 0.77 2.6E-05 31.0 1.0 42 53-98 35-77 (81)
25 2pa1_A PDZ and LIM domain prot 76.7 0.92 3.1E-05 31.5 1.4 44 53-100 40-83 (87)
26 2yt7_A Amyloid beta A4 precurs 76.3 0.94 3.2E-05 32.7 1.4 46 53-101 51-98 (101)
27 1v6b_A Harmonin isoform A1; st 76.2 0.21 7.2E-06 37.5 -2.3 48 53-100 57-105 (118)
28 1v5l_A PDZ and LIM domain 3; a 75.7 1.4 4.8E-05 31.8 2.2 45 53-101 43-87 (103)
29 2e7k_A Maguk P55 subfamily mem 75.5 2.9 9.9E-05 29.5 3.8 68 29-101 13-87 (91)
30 1ujv_A Membrane associated gua 75.4 1.4 4.7E-05 31.7 2.0 47 52-101 43-90 (96)
31 2d92_A INAD-like protein; PDZ 74.8 0.79 2.7E-05 33.5 0.6 46 53-101 58-104 (108)
32 1i16_A Interleukin 16, LCF; cy 74.8 0.85 2.9E-05 34.6 0.8 45 53-100 71-116 (130)
33 1d5g_A Human phosphatase HPTP1 74.8 1.4 4.9E-05 31.0 2.0 44 53-100 47-91 (96)
34 2uzc_A Human pdlim5, PDZ and L 74.6 1.2 3.9E-05 31.0 1.4 44 53-100 41-84 (88)
35 3sfj_A TAX1-binding protein 3; 74.5 0.95 3.2E-05 32.4 1.0 43 53-98 59-101 (104)
36 2fcf_A Multiple PDZ domain pro 74.3 1.5 5E-05 31.4 2.0 45 53-101 53-98 (103)
37 2yuy_A RHO GTPase activating p 74.2 0.93 3.2E-05 34.1 0.9 45 53-101 75-119 (126)
38 2pkt_A PDZ and LIM domain prot 74.0 0.89 3.1E-05 31.9 0.7 44 53-100 41-84 (91)
39 2vsv_A Rhophilin-2; scaffold p 73.9 1.5 5.3E-05 32.7 2.1 46 53-101 58-103 (109)
40 1wif_A RSGI RUH-020, riken cDN 73.9 1.4 4.9E-05 33.9 1.9 47 52-101 62-110 (126)
41 1g9o_A NHE-RF; PDZ domain, com 73.5 1 3.5E-05 31.5 0.9 43 53-98 41-83 (91)
42 1wh1_A KIAA1095 protein; PDZ d 73.3 1.1 3.8E-05 33.6 1.1 43 53-100 62-105 (124)
43 1v62_A KIAA1719 protein; struc 73.1 1.1 3.6E-05 33.4 1.0 45 53-101 56-101 (117)
44 3cyy_A Tight junction protein 72.3 1.4 4.7E-05 30.7 1.4 44 53-100 37-81 (92)
45 1vb7_A PDZ and LIM domain 2; P 72.1 1.9 6.5E-05 30.4 2.1 45 53-101 44-88 (94)
46 1y7n_A Amyloid beta A4 precurs 71.9 0.7 2.4E-05 33.1 -0.3 42 53-98 45-86 (90)
47 3o46_A Maguk P55 subfamily mem 71.5 0.84 2.9E-05 32.2 0.1 45 53-101 42-87 (93)
48 2edz_A PDZ domain-containing p 71.3 1.3 4.5E-05 32.5 1.1 45 52-100 51-95 (114)
49 2jil_A GRIP1 protein, glutamat 71.2 0.81 2.8E-05 32.4 -0.1 44 53-100 46-90 (97)
50 1qau_A Neuronal nitric oxide s 70.1 1.1 3.6E-05 32.7 0.4 46 53-101 40-86 (112)
51 2jxo_A Ezrin-radixin-moesin-bi 69.7 0.81 2.8E-05 32.5 -0.4 43 53-98 47-89 (98)
52 2i04_A Membrane-associated gua 69.4 1.6 5.6E-05 30.0 1.2 42 53-97 39-82 (85)
53 2fe5_A Presynaptic protein SAP 69.4 1.5 5E-05 30.7 1.0 44 53-100 47-91 (94)
54 2kjp_A Uncharacterized protein 69.2 2.2 7.4E-05 30.6 1.9 41 56-101 17-58 (91)
55 1wi2_A Riken cDNA 2700099C19; 69.1 1.7 5.8E-05 31.4 1.3 43 53-100 55-97 (104)
56 3cbz_A Dishevelled-2; PDZ doma 69.0 1.2 4.2E-05 32.5 0.5 46 53-101 47-95 (108)
57 2q3g_A PDZ and LIM domain prot 69.0 1.4 4.7E-05 30.7 0.8 42 53-98 41-82 (89)
58 2dmz_A INAD-like protein; PDZ 68.2 1.2 4E-05 33.4 0.3 44 53-100 60-104 (129)
59 2ejy_A 55 kDa erythrocyte memb 67.9 1.2 4.1E-05 32.6 0.2 71 25-99 15-93 (97)
60 2eeg_A PDZ and LIM domain prot 67.3 2.4 8.3E-05 29.9 1.8 44 53-100 46-89 (94)
61 2awx_A Synapse associated prot 67.2 1.7 5.9E-05 31.3 1.0 45 53-101 47-92 (105)
62 1ihj_A INAD; intermolecular di 66.7 1.1 3.9E-05 31.7 -0.1 44 53-100 51-95 (98)
63 4amh_A Disks large homolog 1; 66.7 2 6.8E-05 31.3 1.3 45 53-101 46-91 (106)
64 1n7t_A 99-MER peptide of densi 66.4 2.4 8.3E-05 30.3 1.7 43 53-100 57-99 (103)
65 1b8q_A Protein (neuronal nitri 66.3 1.4 4.7E-05 32.9 0.3 46 53-101 47-93 (127)
66 1ujd_A KIAA0559 protein; PDZ d 66.2 2.7 9.3E-05 31.0 1.9 44 53-100 63-107 (117)
67 1uew_A Membrane associated gua 66.1 2.2 7.5E-05 31.3 1.4 45 53-101 57-102 (114)
68 2db5_A INAD-like protein; PDZ 65.9 1.8 6.1E-05 32.4 0.9 44 53-100 68-113 (128)
69 2zpm_A Regulator of sigma E pr 65.6 1.7 5.9E-05 30.2 0.7 43 53-100 18-60 (91)
70 1n7e_A AMPA receptor interacti 65.5 2 6.8E-05 30.4 1.0 44 53-100 44-88 (97)
71 2iwn_A Multiple PDZ domain pro 65.5 1.6 5.4E-05 30.5 0.5 43 53-99 47-90 (97)
72 1ueq_A Membrane associated gua 65.1 2.1 7E-05 32.0 1.1 45 53-100 58-104 (123)
73 2kjd_A Sodium/hydrogen exchang 64.7 1.5 5.1E-05 32.6 0.2 45 53-100 47-91 (128)
74 2kl1_A YLBL protein; structure 64.2 2 7E-05 30.7 0.9 43 53-101 19-62 (94)
75 2koj_A Partitioning defective 64.1 1.5 5.2E-05 31.8 0.2 45 53-100 53-99 (111)
76 3bpu_A Membrane-associated gua 64.0 2.2 7.6E-05 29.5 1.0 42 55-99 41-83 (88)
77 2eeh_A PDZ domain-containing p 63.9 2.5 8.5E-05 30.2 1.3 43 53-100 50-92 (100)
78 2dm8_A INAD-like protein; PDZ 63.9 2.6 9E-05 30.7 1.5 44 53-100 57-101 (116)
79 2r4h_A Membrane-associated gua 63.7 2.7 9.2E-05 30.8 1.5 44 53-100 63-107 (112)
80 3k1r_A Harmonin; protein-prote 63.7 2.3 8E-05 34.2 1.2 42 53-99 124-165 (192)
81 2iwq_A Multiple PDZ domain pro 62.7 2.7 9.4E-05 31.6 1.4 44 53-100 73-117 (123)
82 1q3o_A Shank1; PDZ, GKAP, pept 62.5 1.4 4.7E-05 32.1 -0.3 42 53-98 59-100 (109)
83 1uep_A Membrane associated gua 62.4 1.9 6.6E-05 31.0 0.4 43 53-98 48-92 (103)
84 1rgw_A ZAsp protein; PDZ, cyph 62.3 4.3 0.00015 27.7 2.3 43 54-100 40-82 (85)
85 2kom_A Partitioning defective 61.9 1.8 6.3E-05 32.3 0.3 45 53-100 72-118 (121)
86 2qkv_A Inactivation-NO-after-p 61.8 2.8 9.5E-05 29.8 1.2 47 52-102 44-91 (96)
87 2jre_A C60-1 PDZ domain peptid 61.7 1.8 6.1E-05 31.2 0.2 44 53-100 58-102 (108)
88 1vae_A Rhophilin 2, rhophilin, 61.4 1.8 6.1E-05 32.2 0.1 45 53-100 50-94 (111)
89 3l4f_D SH3 and multiple ankyri 61.2 3.1 0.00011 31.7 1.5 44 53-100 79-122 (132)
90 1wfg_A Regulating synaptic mem 60.7 2 7E-05 32.6 0.3 45 53-100 79-125 (131)
91 1wha_A KIAA0147 protein, scrib 60.1 3.6 0.00012 29.5 1.6 44 53-100 52-96 (105)
92 2dc2_A GOPC, golgi associated 59.9 1.9 6.5E-05 31.2 0.0 43 53-99 49-92 (103)
93 3r68_A Na(+)/H(+) exchange reg 59.7 1.8 6.1E-05 30.3 -0.2 41 53-96 43-83 (95)
94 2kv8_A RGS12, regulator of G-p 59.4 3.5 0.00012 28.2 1.4 44 53-100 37-80 (83)
95 1whd_A RGS3, regulator of G-pr 59.0 2.6 8.8E-05 30.2 0.6 44 53-100 50-93 (100)
96 2dkr_A LIN-7 homolog B; LIN-7B 58.5 4 0.00014 28.3 1.5 43 54-100 45-88 (93)
97 2djt_A Unnamed protein product 57.9 2.8 9.7E-05 29.9 0.7 45 53-101 52-97 (104)
98 2qg1_A Multiple PDZ domain pro 57.5 2.9 0.0001 29.1 0.7 45 53-101 43-88 (92)
99 2edp_A Fragment, shroom family 57.5 3.9 0.00013 29.3 1.4 43 53-100 49-92 (100)
100 3khf_A Microtubule-associated 57.4 2.3 7.8E-05 30.1 0.1 44 53-100 48-91 (99)
101 1m5z_A GRIP, AMPA receptor int 57.0 3 0.0001 28.9 0.7 22 53-74 46-67 (91)
102 2jik_A Synaptojanin-2 binding 56.9 3.1 0.00011 29.5 0.8 42 53-98 51-93 (101)
103 1fc6_A Photosystem II D1 prote 56.8 2.7 9.3E-05 37.6 0.5 31 44-74 98-134 (388)
104 1v5q_A GRIP1 homolog, glutamat 56.4 2.1 7E-05 32.0 -0.3 45 53-100 59-105 (122)
105 2eaq_A LIM domain only protein 56.4 2.3 7.9E-05 29.5 -0.0 22 53-74 42-63 (90)
106 3r0h_A INAD, inactivation-NO-a 56.3 2.8 9.6E-05 33.3 0.5 45 53-101 150-195 (206)
107 2f5y_A Regulator of G-protein 56.3 3.1 0.00011 29.1 0.7 44 53-100 38-81 (91)
108 1wf7_A Enigma homologue protei 56.3 3.5 0.00012 29.5 0.9 44 53-100 43-86 (103)
109 2w4f_A Protein LAP4; structura 56.2 3.2 0.00011 29.1 0.7 44 53-100 48-91 (97)
110 2cs5_A Tyrosine-protein phosph 55.8 3.3 0.00011 30.5 0.7 46 53-101 55-105 (119)
111 2q9v_A Membrane-associated gua 55.6 2.2 7.4E-05 29.7 -0.3 22 53-74 41-63 (90)
112 2edv_A FERM and PDZ domain-con 55.4 3.2 0.00011 29.6 0.6 43 55-101 46-88 (96)
113 3soe_A Membrane-associated gua 55.4 4.2 0.00014 31.0 1.3 45 52-99 45-90 (113)
114 1qav_A Alpha-1 syntrophin (res 55.2 4 0.00014 28.3 1.1 41 53-97 44-85 (90)
115 1ufx_A KIAA1526 protein; PDZ d 54.9 1.9 6.5E-05 31.5 -0.7 45 53-100 46-95 (103)
116 2qt5_A Glutamate receptor-inte 54.7 3.3 0.00011 33.0 0.6 44 53-100 149-193 (200)
117 1mfg_A ERB-B2 interacting prot 54.1 4.6 0.00016 28.3 1.3 42 53-99 49-90 (95)
118 2d8i_A T-cell lymphoma invasio 54.1 3.4 0.00012 30.9 0.6 43 53-101 58-100 (114)
119 3ngh_A PDZ domain-containing p 54.1 2.5 8.6E-05 30.3 -0.2 44 53-100 40-83 (106)
120 1q7x_A PDZ2B domain of PTP-BAS 53.9 3.6 0.00012 29.6 0.7 45 53-101 56-101 (108)
121 2o2t_A Multiple PDZ domain pro 53.8 2.4 8.3E-05 31.0 -0.3 45 53-101 63-109 (117)
122 1nf3_C PAR-6B; semi-CRIB motif 53.7 2.4 8.2E-05 31.9 -0.3 44 53-100 79-123 (128)
123 1uju_A Scribble; PDZ domain, c 53.6 3.1 0.00011 30.2 0.3 44 53-100 58-102 (111)
124 1um1_A KIAA1849 protein, RSGI 52.9 4.9 0.00017 29.0 1.3 45 53-101 50-95 (110)
125 3tsv_A Tight junction protein 52.8 3.7 0.00013 30.9 0.6 45 53-100 65-110 (124)
126 2d90_A PDZ domain containing p 52.8 5 0.00017 28.5 1.3 44 53-100 44-87 (102)
127 3b76_A E3 ubiquitin-protein li 52.8 2.5 8.4E-05 31.8 -0.4 44 53-100 67-111 (118)
128 2vwr_A Ligand of NUMB protein 52.5 4 0.00014 28.6 0.7 42 53-98 43-85 (95)
129 2ego_A General receptor for ph 52.5 4.4 0.00015 28.6 1.0 42 53-98 51-92 (96)
130 2eei_A PDZ domain-containing p 52.3 3 0.0001 29.8 0.1 21 53-73 46-66 (106)
131 2byg_A Channel associated prot 52.0 2.7 9.2E-05 31.2 -0.3 42 53-98 68-110 (117)
132 1uf1_A KIAA1526 protein; PDZ d 51.7 5.4 0.00019 29.7 1.4 43 53-100 60-102 (128)
133 2g5m_B Neurabin-2; spinophilin 51.7 3.8 0.00013 29.7 0.5 44 53-100 49-93 (113)
134 1p1d_A PDZ45, glutamate recept 51.2 4.9 0.00017 32.0 1.1 44 53-100 149-193 (196)
135 3qe1_A Sorting nexin-27, G pro 51.0 3.4 0.00012 29.6 0.2 45 53-101 57-101 (107)
136 3nfk_A Tyrosine-protein phosph 50.5 4.1 0.00014 29.2 0.5 43 53-98 57-104 (107)
137 1uez_A KIAA1526 protein; PDZ d 49.8 7.4 0.00025 27.5 1.8 42 53-99 49-90 (101)
138 1x5q_A LAP4 protein; PDZ domai 49.7 4.6 0.00016 29.1 0.7 44 53-100 60-103 (110)
139 2lob_A Golgi-associated PDZ an 54.9 3.5 0.00012 30.5 0.0 26 53-78 67-93 (112)
140 3i18_A LMO2051 protein; alpha- 49.3 5.5 0.00019 28.5 1.1 40 56-100 23-63 (100)
141 2iwo_A Multiple PDZ domain pro 49.0 4.8 0.00016 30.0 0.7 44 53-100 67-111 (120)
142 1x5n_A Harmonin; PDZ domain, u 48.9 6 0.00021 28.7 1.2 43 53-100 55-97 (114)
143 2i1n_A Discs, large homolog 3; 48.5 5 0.00017 28.5 0.7 43 53-99 48-91 (102)
144 2la8_A Inactivation-NO-after-p 47.9 5 0.00017 29.3 0.7 46 52-101 38-84 (106)
145 1va8_A Maguk P55 subfamily mem 47.9 3.4 0.00012 30.3 -0.3 68 29-100 32-106 (113)
146 1wfv_A Membrane associated gua 47.8 5.1 0.00018 28.3 0.7 44 53-100 50-94 (103)
147 2gzv_A PRKCA-binding protein; 47.2 3.6 0.00012 30.5 -0.3 41 53-97 64-105 (114)
148 3egg_C Spinophilin; PP1, serin 47.1 3.6 0.00012 33.0 -0.3 41 53-97 125-166 (170)
149 3qik_A Phosphatidylinositol 3, 47.1 3.6 0.00012 31.0 -0.3 43 53-98 53-97 (101)
150 3axa_A Afadin, nectin-3, prote 47.1 3.6 0.00012 29.5 -0.3 45 53-101 52-97 (106)
151 1k32_A Tricorn protease; prote 46.8 15 0.00052 36.0 4.1 60 35-100 738-813 (1045)
152 2z17_A Pleckstrin homology SEC 46.7 2.4 8.2E-05 30.5 -1.3 40 53-96 62-101 (104)
153 2fne_A Multiple PDZ domain pro 46.6 3.7 0.00013 30.5 -0.3 44 53-100 67-111 (117)
154 2kpk_A Membrane-associated gua 46.6 3.7 0.00013 30.9 -0.3 43 53-98 57-101 (129)
155 2daz_A INAD-like protein; PDZ 46.2 4.6 0.00016 30.0 0.2 45 53-101 65-110 (124)
156 2dlu_A INAD-like protein; PDZ 46.0 5.9 0.0002 28.6 0.8 44 53-100 52-96 (111)
157 2opg_A Multiple PDZ domain pro 45.9 5.8 0.0002 27.8 0.7 44 53-100 44-88 (98)
158 2eno_A Synaptojanin-2-binding 45.9 6.4 0.00022 29.0 0.9 22 53-74 61-83 (120)
159 1wg6_A Hypothetical protein (r 45.0 3.6 0.00012 31.0 -0.6 45 53-100 69-120 (127)
160 1uhp_A Hypothetical protein KI 44.9 7.5 0.00026 27.9 1.2 42 53-98 55-97 (107)
161 2ehr_A INAD-like protein; PDZ 44.7 7.9 0.00027 28.2 1.3 45 52-100 63-108 (117)
162 3i4w_A Disks large homolog 4; 44.4 6.7 0.00023 27.7 0.8 44 53-100 49-93 (104)
163 3gge_A PDZ domain-containing p 44.3 5.3 0.00018 29.7 0.3 44 56-102 46-90 (95)
164 4e34_A Golgi-associated PDZ an 44.2 8.4 0.00029 26.3 1.3 22 53-74 42-64 (87)
165 1wf8_A Neurabin-I; PDZ domain, 44.1 6.1 0.00021 28.4 0.6 44 53-100 54-98 (107)
166 3kzd_A TIAM-1, T-lymphoma inva 43.9 4.7 0.00016 29.6 -0.1 32 53-87 49-80 (94)
167 1um7_A Synapse-associated prot 43.9 7 0.00024 28.0 0.9 44 53-100 53-97 (113)
168 2qbw_A PDZ-fibronectin fusion 42.3 8.6 0.00029 30.2 1.3 22 53-75 38-59 (195)
169 3suz_A Amyloid beta A4 precurs 42.1 5.3 0.00018 35.9 0.0 34 52-88 328-361 (388)
170 2yub_A LIMK-2, LIM domain kina 41.3 9.6 0.00033 28.5 1.3 43 54-100 61-103 (118)
171 2i6v_A General secretion pathw 41.2 8.1 0.00028 26.8 0.8 21 53-73 33-53 (87)
172 2h2b_A Tight junction protein 41.2 9.5 0.00032 27.2 1.2 20 55-74 54-73 (107)
173 2x5c_A Hypothetical protein OR 40.6 50 0.0017 25.1 5.2 41 142-182 62-111 (131)
174 3id1_A Regulator of sigma E pr 40.6 8.5 0.00029 27.4 0.9 44 53-101 16-60 (95)
175 3hpk_A Protein interacting wit 40.3 5.3 0.00018 29.6 -0.3 44 53-100 59-103 (125)
176 1p1d_A PDZ45, glutamate recept 40.2 8.5 0.00029 30.5 0.9 44 53-99 50-95 (196)
177 3gsl_A Disks large homolog 4; 40.0 8 0.00027 30.0 0.7 44 53-100 144-188 (196)
178 2qf4_A Cell shape determining 39.4 12 0.0004 30.2 1.7 52 44-97 22-78 (172)
179 1uit_A Human discs large 5 pro 38.1 7.1 0.00024 28.5 0.1 44 53-100 56-99 (117)
180 2csj_A TJP2 protein; PDZ domai 37.9 10 0.00035 27.7 1.0 40 55-98 61-100 (117)
181 1tp5_A Presynaptic density pro 37.9 9.6 0.00033 27.8 0.8 43 53-99 52-95 (119)
182 2i4s_A General secretion pathw 36.2 12 0.00039 27.0 1.0 41 53-98 51-92 (105)
183 1te0_A Protease DEGS; two doma 34.7 14 0.00049 31.7 1.6 44 53-101 258-302 (318)
184 1x6d_A Interleukin-16; PDZ dom 33.8 6.3 0.00021 28.9 -0.8 41 53-96 56-97 (119)
185 2l97_A HTRA, putative serine p 33.3 12 0.00039 28.4 0.6 41 55-100 72-113 (134)
186 3tsz_A Tight junction protein 32.3 12 0.00039 33.9 0.6 21 53-73 45-65 (391)
187 1w9e_A Syntenin 1; cell adhesi 32.0 16 0.00055 28.1 1.3 22 53-74 121-142 (166)
188 2wx3_A MRNA-decapping enzyme 1 31.9 26 0.00088 23.5 2.1 15 167-181 28-42 (51)
189 3l7h_A RE64145P, roadblock; LC 31.9 1.5E+02 0.0052 21.7 7.5 73 59-161 19-95 (97)
190 2j5u_A MREC protein; bacterial 31.3 17 0.00058 31.1 1.4 53 43-97 83-140 (255)
191 2csp_A RIM-BP2, RIM binding pr 31.3 20 0.00068 28.4 1.7 47 45-91 22-76 (130)
192 4fgm_A Aminopeptidase N family 30.7 40 0.0014 32.2 4.0 61 34-100 485-552 (597)
193 2pzd_A Serine protease HTRA2; 30.2 17 0.00058 26.1 1.1 40 53-99 49-88 (113)
194 1w9e_A Syntenin 1; cell adhesi 29.8 16 0.00055 28.1 1.0 43 53-98 41-83 (166)
195 2krg_A Na(+)/H(+) exchange reg 28.7 8 0.00027 32.2 -1.1 42 53-98 47-89 (216)
196 4a8c_A Periplasmic PH-dependen 28.7 20 0.00069 32.5 1.6 42 53-100 377-418 (436)
197 2p3w_A Probable serine proteas 28.3 19 0.00066 25.9 1.1 19 54-72 50-68 (112)
198 3k50_A Putative S41 protease; 27.1 25 0.00085 32.0 1.9 59 33-98 73-142 (403)
199 1w63_M Adaptor-related protein 26.7 25 0.00085 31.8 1.8 46 135-181 48-95 (423)
200 2qt5_A Glutamate receptor-inte 26.7 20 0.00067 28.3 1.0 43 53-99 47-90 (200)
201 3r4r_A Hypothetical fimbrial a 26.2 38 0.0013 29.6 2.7 56 5-65 48-104 (296)
202 3gsl_A Disks large homolog 4; 26.1 19 0.00063 27.8 0.7 21 53-73 49-70 (196)
203 3r0h_A INAD, inactivation-NO-a 25.3 19 0.00065 28.3 0.6 47 53-100 59-106 (206)
204 2d7e_A Primosomal protein N'; 24.7 1.1E+02 0.0037 22.1 4.7 34 29-63 13-47 (105)
205 3pv2_A DEGQ; trypsin fold, PDZ 24.3 27 0.00093 31.9 1.6 42 53-100 400-441 (451)
206 4epi_A Pesticin, lysozyme chim 24.2 27 0.00094 31.5 1.5 100 44-157 92-194 (330)
207 1z87_A Alpha-1-syntrophin; pro 24.1 26 0.0009 30.1 1.3 27 149-175 233-259 (263)
208 1y8t_A Hypothetical protein RV 23.9 32 0.0011 29.5 1.8 43 53-100 256-299 (324)
209 2hga_A Conserved protein MTH13 23.1 45 0.0016 25.0 2.4 39 57-101 42-81 (125)
210 3op1_A Macrolide-efflux protei 23.1 26 0.0009 30.9 1.2 20 45-64 20-40 (308)
211 3msh_A Hepatitis B virus X-int 21.5 1.6E+02 0.0056 22.0 5.1 38 111-148 41-78 (99)
212 3dwg_C 9.5 kDa culture filtrat 20.8 44 0.0015 23.4 1.8 22 61-82 58-84 (93)
213 2wx4_A DCP1, decapping protein 20.4 37 0.0013 22.3 1.2 15 167-181 26-40 (46)
No 1
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=100.00 E-value=7.3e-80 Score=533.20 Aligned_cols=217 Identities=55% Similarity=0.988 Sum_probs=207.8
Q ss_pred CeEEEEEEEeccceeEEecccCCCccccceecccCccccccccCceeEEeeccccceeeeeeEEeeeceeecccccCCCc
Q psy15590 1 MVIYGVYIVSKSGGLIFNYDHNVPKIENAVTFQFPLNIKLTPENKKIVVSFGQRDGILVGHVLTAVNDAVIKNGQLDDGT 80 (217)
Q Consensus 1 M~iy~~~i~~~~~~~i~~~d~~~~~~~~~~t~~~p~~~~l~~~~~~~~v~~g~~~~~~~g~~~~~~ng~~~~~~~~~dg~ 80 (217)
|+|||||||||||+|||++||+.|++|+||||+||||++|+.+|+|++|+|||||||++||+++++||.+|+|++++|||
T Consensus 1 m~iy~~yi~~~~~~liy~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ng~~~~~~~~~d~~ 80 (219)
T 2j3t_D 1 MAIFSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVGHAVLAINGMDVNGRYTADGK 80 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECC----CEEEEECSSCSSEEEECSSSEEEEECCCTTCCTTCEEEEETTEECBTTBCTTSS
T ss_pred CeEEEEEEEecCCceEEecccCCCCcceeeeccCCcceeeeeccceeEEeecccCCccccceeeecCCccCCCcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCeeeeeCCCCCCchhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEecCcEEEEEEEeCCCcEEEEEec
Q psy15590 81 DVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGD 160 (217)
Q Consensus 81 ~~~~~~~~~~n~Pl~l~~~~~~l~sne~llLag~l~SL~~i~~kLsp~~~s~g~~~~~T~~yklh~yeT~TGiKFVlitd 160 (217)
+|+++|.+++|+||+||++++++++|++++|+|++|||++|++||+|.++++|+++++|++||+|||+|+||+||||+||
T Consensus 81 ~v~~~iigk~N~PLyir~f~~~l~sn~~L~lag~lhSLd~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd 160 (219)
T 2j3t_D 81 EVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLAD 160 (219)
T ss_dssp BHHHHTTCGGGCSEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEEC
T ss_pred eeeeeeecCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999877889999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHhhhcCCcCC
Q psy15590 161 TNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNV 217 (217)
Q Consensus 161 ~~~~~l~~~L~~IYelYvdyVlkNPfy~~~~pI~s~~Fd~~l~~ll~~~~~~~~~~~ 217 (217)
+++++++++|++||++|+|||||||||+++|||+|++||++|++++++++++|+.++
T Consensus 161 ~~~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s~~Fd~~v~~l~~~~~~~~~~~~ 217 (219)
T 2j3t_D 161 PRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAGTFGP 217 (219)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCCHHHHHHHHHHHHHHTTSCCC--
T ss_pred CCchHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHHHHHHHHHHHHhhccCcccc
Confidence 999999999999999999999999999999999999999999999999999998753
No 2
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=100.00 E-value=7.6e-45 Score=295.77 Aligned_cols=106 Identities=26% Similarity=0.532 Sum_probs=103.0
Q ss_pred chhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEecCcEEEEEEEeCCCcEEEEEecCCchhHHHHHHHHH-HHHHhhhhc
Q psy15590 105 TNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIY-ELYADYALK 183 (217)
Q Consensus 105 sne~llLag~l~SL~~i~~kLsp~~~s~g~~~~~T~~yklh~yeT~TGiKFVlitd~~~~~l~~~L~~IY-elYvdyVlk 183 (217)
+|+.++++|++|||++|++||+|.++++|+++++|++||+|||+|+||+||||+||+++++++++|++|| ++|+|||||
T Consensus 32 ~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~~i~~~l~~iy~~lYv~~v~k 111 (145)
T 2j3t_C 32 EEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVK 111 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEECTTCCCCHHHHHHHHHTTHHHHTTT
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEecCCcchHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999987789999999999999999999999999999999999999999999 899999999
Q ss_pred CCCCCCCCcccchhHHHHHHHHHHHhh
Q psy15590 184 NPFYSLEMPIRCELFDTHLQNLLQQHE 210 (217)
Q Consensus 184 NPfy~~~~pI~s~~Fd~~l~~ll~~~~ 210 (217)
||||+++|||+|++||.+|+++++++.
T Consensus 112 NPfy~~~~pI~s~~Fd~~v~~~~~~~~ 138 (145)
T 2j3t_C 112 NPLCPLGQTVQSELFRSRLDSYVRSLP 138 (145)
T ss_dssp CTTSCTTSCCCCHHHHHHHHHHHTTST
T ss_pred CCCCCCCCceecHHHHHHHHHHHHhCc
Confidence 999999999999999999999999875
No 3
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-44 Score=309.42 Aligned_cols=135 Identities=40% Similarity=0.720 Sum_probs=124.0
Q ss_pred CeEEEEEEEeccceeEEecccCCCccccceecccCccccccccCceeEEeeccccceeeeeeEEeeeceeecccccCCCc
Q psy15590 1 MVIYGVYIVSKSGGLIFNYDHNVPKIENAVTFQFPLNIKLTPENKKIVVSFGQRDGILVGHVLTAVNDAVIKNGQLDDGT 80 (217)
Q Consensus 1 M~iy~~~i~~~~~~~i~~~d~~~~~~~~~~t~~~p~~~~l~~~~~~~~v~~g~~~~~~~g~~~~~~ng~~~~~~~~~dg~ 80 (217)
|+||++|||||||+|||+++|...
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~-------------------------------------------------------- 24 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTND-------------------------------------------------------- 24 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSC--------------------------------------------------------
T ss_pred CeeEEEEEEeCCCCEEeehhhccC--------------------------------------------------------
Confidence 999999999999999999999542
Q ss_pred chhhhccCCCCCCeeeeeCCCCCCchhhHHHhhhhhcHHHHHhhhCCCC-------------------------------
Q psy15590 81 DVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEP------------------------------- 129 (217)
Q Consensus 81 ~~~~~~~~~~n~Pl~l~~~~~~l~sne~llLag~l~SL~~i~~kLsp~~------------------------------- 129 (217)
..++++||+|+|||+||||++|++||+|.+
T Consensus 25 -------------------~~~l~snd~l~lag~lhsv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~ 85 (219)
T 3cue_A 25 -------------------EQKLNSNEYLILASTLHGVFAIASQLTPKALQLTQQTNIENTIPYIPYVGMSSNRSDTRNG 85 (219)
T ss_dssp -------------------CCCSCHHHHHHHHHHHHHHHHHHHHTCCSCC-----------CCCCCSCCC----------
T ss_pred -------------------cCCCCcchhhhhhhhhHHHHHHHhhcCCCcccccccccccccccccccccccccccccccc
Confidence 024679999999999999999999999965
Q ss_pred -----------------------------CCCceeEEecCcEEEEEEEeCCCcEEEEEecCCc-----------------
Q psy15590 130 -----------------------------KSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQ----------------- 163 (217)
Q Consensus 130 -----------------------------~s~g~~~~~T~~yklh~yeT~TGiKFVlitd~~~----------------- 163 (217)
.+.||++++|++|++|||+|+||+||||+||+..
T Consensus 86 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~ 165 (219)
T 3cue_A 86 GGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPK 165 (219)
T ss_dssp ------------------CCSCCSCCCCCCSSSCCEEEESSCEEEEEECTTSCEEEEEESSCC-----------------
T ss_pred cccccccccccccccccccccccccccccCCCceEEEEeCCEEEEEEEcCCCCEEEEEecCCCccccccccccccccccc
Confidence 2358999999999999999999999999999987
Q ss_pred -------hhHHHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHhh
Q psy15590 164 -------SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHE 210 (217)
Q Consensus 164 -------~~l~~~L~~IYelYvdyVlkNPfy~~~~pI~s~~Fd~~l~~ll~~~~ 210 (217)
++++++|++||++|+|||||||||.++|||+|++||.+|++++++++
T Consensus 166 ~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~~~pI~S~~Fd~~V~~~~~~~~ 219 (219)
T 3cue_A 166 STSNLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENLQ 219 (219)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHSCTTCCTTSCCCCHHHHHHHHHHHHHHC
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999999999999863
No 4
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-44 Score=294.56 Aligned_cols=143 Identities=23% Similarity=0.402 Sum_probs=124.4
Q ss_pred CeEEEEEEEeccceeEEecccCCCccccceecccCccccccccCceeEEeeccccceeeeeeEEeeeceeecccccCCCc
Q psy15590 1 MVIYGVYIVSKSGGLIFNYDHNVPKIENAVTFQFPLNIKLTPENKKIVVSFGQRDGILVGHVLTAVNDAVIKNGQLDDGT 80 (217)
Q Consensus 1 M~iy~~~i~~~~~~~i~~~d~~~~~~~~~~t~~~p~~~~l~~~~~~~~v~~g~~~~~~~g~~~~~~ng~~~~~~~~~dg~ 80 (217)
|+||++|||||||+|||.++|..++.+.+++
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~------------------------------------------------- 31 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGT------------------------------------------------- 31 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-----------------------------------------------------------
T ss_pred CeEEEEEEEcCCCceEEeeeecccccccccc-------------------------------------------------
Confidence 9999999999999999999998754322211
Q ss_pred chhhhccCCCCCCeeeeeCCCCCCchhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEecCcEEEEEEEeCCCcEEEEEec
Q psy15590 81 DVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGD 160 (217)
Q Consensus 81 ~~~~~~~~~~n~Pl~l~~~~~~l~sne~llLag~l~SL~~i~~kLsp~~~s~g~~~~~T~~yklh~yeT~TGiKFVlitd 160 (217)
.+++.++|+.++++|++|||++|++||+|.+..+||++++|++||+|||||+||+||||+||
T Consensus 32 ------------------~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td 93 (159)
T 3cue_C 32 ------------------INSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSD 93 (159)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECC
T ss_pred ------------------ccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeC
Confidence 12345689999999999999999999999877789999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHH-HHHhhhhcCC-----CCCCC--------CcccchhHHHHHHHHHHHhh
Q psy15590 161 TNQSGLDLILKKIYE-LYADYALKNP-----FYSLE--------MPIRCELFDTHLQNLLQQHE 210 (217)
Q Consensus 161 ~~~~~l~~~L~~IYe-lYvdyVlkNP-----fy~~~--------~pI~s~~Fd~~l~~ll~~~~ 210 (217)
+++++++++|++||+ +|+|||+||| ||.++ |||+|++||.+|+++++++.
T Consensus 94 ~~~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~~~~~~~~~~pI~s~~Fd~~l~~~~~~~~ 157 (159)
T 3cue_C 94 FKQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLESFLAPMV 157 (159)
T ss_dssp SSSSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSCTTTTTSCCCCCCCHHHHHHHHHHTSCC-
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhCCCccccccccccccccccCcCcccHHHHHHHHHHHHhcc
Confidence 999999999999996 9999999999 99999 99999999999999998763
No 5
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=100.00 E-value=3.1e-34 Score=231.95 Aligned_cols=101 Identities=22% Similarity=0.418 Sum_probs=90.1
Q ss_pred hhHHHh-hhhhcHHHHHhhhCCCCCCCc---eeEEecCcEEEEEEEeCCCcEEEEEecCC-chhHHHHHHHHHHHHHhhh
Q psy15590 107 EKIFLA-SMFYPLFAIASQLSPEPKSSG---IEVLEADTFKLHCYQTLTGVKFMIVGDTN-QSGLDLILKKIYELYADYA 181 (217)
Q Consensus 107 e~llLa-g~l~SL~~i~~kLsp~~~s~g---~~~~~T~~yklh~yeT~TGiKFVlitd~~-~~~l~~~L~~IYelYvdyV 181 (217)
+.++++ +++||+..+.++++|.+ +| ..+..++.|++|||+|+||+|||++||++ +++++++|++||++|+|+|
T Consensus 35 ~~~l~~~~i~hs~ldiv~~~~~~~--~~~~l~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~~~~~i~~~~~~iy~~Y~~~v 112 (142)
T 2j3w_A 35 DHRHLNQFIAHAALDLVDENMWLS--NNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFA 112 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGC--SCSEEEEEEEETTEEEEEEECTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--CcceeEeeecccceEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHHHHHHHHHh
Confidence 444444 89999999999999853 44 36678899999999999999999999995 9999999999999999999
Q ss_pred hcCCCCCCCCcccchhHHHHHHHHHHHhh
Q psy15590 182 LKNPFYSLEMPIRCELFDTHLQNLLQQHE 210 (217)
Q Consensus 182 lkNPfy~~~~pI~s~~Fd~~l~~ll~~~~ 210 (217)
+ ||||+++|||+|++||.+|+++++++-
T Consensus 113 ~-NPfy~~~~pI~s~~Fd~~v~~~~~~~l 140 (142)
T 2j3w_A 113 M-NPFYEPNSPIRSSAFDRKVQFLGKKHL 140 (142)
T ss_dssp H-STTCCTTCCCCCHHHHHHHHHHHHHHT
T ss_pred c-CCCCCCCCceecHHHHHHHHHHHHHhc
Confidence 7 999999999999999999999999873
No 6
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=99.67 E-value=4e-16 Score=129.45 Aligned_cols=105 Identities=14% Similarity=0.176 Sum_probs=80.5
Q ss_pred ccCCCCCCeeeeeCCCC-CCchhhHHHhhhhh-cHHHHHhhhCCCCC--C-Cce-eEEecCcEEEEEEE-eCCCcEEEEE
Q psy15590 86 LSKPESFPVKLTFTRPR-MTTNEKIFLASMFY-PLFAIASQLSPEPK--S-SGI-EVLEADTFKLHCYQ-TLTGVKFMIV 158 (217)
Q Consensus 86 ~~~~~n~Pl~l~~~~~~-l~sne~llLag~l~-SL~~i~~kLsp~~~--s-~g~-~~~~T~~yklh~ye-T~TGiKFVli 158 (217)
+-+++|.||+|+..++. .+.|..+.+.-+.| ||+.+.++++.... . .++ ..+.++.+++|+|+ |+||+|||++
T Consensus 15 IIg~~n~PLyI~~~~~~~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt~vKfVl~ 94 (162)
T 3pr6_A 15 LIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQTGLKIVIG 94 (162)
T ss_dssp EECTTSCEEEEECCC-------CHHHHHHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTTCCEEEEE
T ss_pred EECCCCceeEEEeCCCccccccchhHHHHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCCceEEEEE
Confidence 34789999999875442 23455677777778 99999999953211 1 123 46789999999998 9999999999
Q ss_pred ecCC------c--hhHHHHHHHHHHHHHhhhhcCCCCCCCC
Q psy15590 159 GDTN------Q--SGLDLILKKIYELYADYALKNPFYSLEM 191 (217)
Q Consensus 159 td~~------~--~~l~~~L~~IYelYvdyVlkNPfy~~~~ 191 (217)
++.+ + .++|++|+++|++|++.+ +||||.++.
T Consensus 95 ~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk~l-~NPFy~~~d 134 (162)
T 3pr6_A 95 FEQKSLSGADDEFEAINQIFETVRKIYIRVK-CNPLLVSGD 134 (162)
T ss_dssp EEGGGCCCCHHHHHHHHHHHHHHHHHHHHHH-TCTTGGGSC
T ss_pred EccCCcccccchHHHHHHHHHHHHHHHHHHh-cCCCCCCCc
Confidence 9863 4 799999999999999955 899999983
No 7
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=95.20 E-value=0.23 Score=40.90 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=64.1
Q ss_pred HHHHHhhhCCCCCCCceeEEecCcEEEEEEEeCCCcEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCCCCCCCcccc
Q psy15590 118 LFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPFYSLEMPIRC 195 (217)
Q Consensus 118 L~~i~~kLsp~~~s~g~~~~~T~~yklh~yeT~TGiKFVlitd~~~~--~l~~~L~~IYelYvdyVlkNPfy~~~~pI~s 195 (217)
.+.+.+++.|. .....+++.+.|.+| |....|+=|++++|..-+ -.-.+|.+|.+.|..-. .+-.-....|...
T Consensus 38 a~~il~ki~~~--~~~r~s~~~~~y~fh-y~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~-~~~~~~~~~~~~~ 113 (196)
T 2nut_C 38 AKQLFRKLNEQ--SPTRCTLEAGAMTFH-YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQH-GKKVPTVSRPYSF 113 (196)
T ss_dssp HHHHHHHCCTT--SCSEEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH-TTTTTTCCSTTTT
T ss_pred HHHHHHhcCCC--CCCeEEEEeCCEEEE-EEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhc-cchhccccCCCch
Confidence 46677888763 245678999999999 777899999999998743 45678888886554422 1211112235555
Q ss_pred hhHHHHHHHHHHHhhhc
Q psy15590 196 ELFDTHLQNLLQQHEKT 212 (217)
Q Consensus 196 ~~Fd~~l~~ll~~~~~~ 212 (217)
..|+..|+++++.++.+
T Consensus 114 ~~f~~~l~~~~~~y~~~ 130 (196)
T 2nut_C 114 IEFDTFIQKTKKLYIDS 130 (196)
T ss_dssp GGGHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 68999999999888654
No 8
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=94.41 E-value=0.16 Score=40.23 Aligned_cols=88 Identities=15% Similarity=0.155 Sum_probs=57.0
Q ss_pred cHHHHHhhhCCCCCCCceeEEecCcEEEEEEEeCCCcEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q psy15590 117 PLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPFYSLEMPIR 194 (217)
Q Consensus 117 SL~~i~~kLsp~~~s~g~~~~~T~~yklh~yeT~TGiKFVlitd~~~~--~l~~~L~~IYelYvdyVlkNPfy~~~~pI~ 194 (217)
-.+.+++|+.| ....+++.+.|.+|++....|+=+++++|..-+ -.=.+|++|.+-|..-. |-.......+
T Consensus 47 ~ar~i~~r~~~----~~R~sv~~~~y~fH~~~~~~gl~~l~i~D~~yp~rvAF~~L~~i~~eF~~~y---~~~~~~~~~~ 119 (144)
T 3bw6_A 47 FAETVASRTGA----GQRQSIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEYLVAH---PKEEWADVTE 119 (144)
T ss_dssp HHHHHHHHCCT----TEEEEEEETTEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHS---CGGGTTTCSS
T ss_pred HHHHHHhhCCC----CceEEEEeCCEEEEEEEecCCEEEEEEECCCCChhHHHHHHHHHHHHHHHHc---cchhhhhccc
Confidence 45667777755 246889999999999988999999999998733 44567788875554311 1110111111
Q ss_pred ---chhHHHHHHHHHHHhhhc
Q psy15590 195 ---CELFDTHLQNLLQQHEKT 212 (217)
Q Consensus 195 ---s~~Fd~~l~~ll~~~~~~ 212 (217)
.-.| ..+++++++++.+
T Consensus 120 ~~~~~~f-~~l~~~i~kYqdp 139 (144)
T 3bw6_A 120 TNDALKM-KQLDTYISKYQDP 139 (144)
T ss_dssp CCGGGCC-THHHHHHHHTSCC
T ss_pred ccCCcch-HHHHHHHHHhCch
Confidence 3344 5677777777543
No 9
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=93.30 E-value=0.3 Score=40.89 Aligned_cols=88 Identities=11% Similarity=0.183 Sum_probs=58.6
Q ss_pred hcHHHHHhhhCCCCCCCceeEEecCcEEEEEEEeCCCcEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCC-CCCCCc
Q psy15590 116 YPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPF-YSLEMP 192 (217)
Q Consensus 116 ~SL~~i~~kLsp~~~s~g~~~~~T~~yklh~yeT~TGiKFVlitd~~~~--~l~~~L~~IYelYvdyVlkNPf-y~~~~p 192 (217)
+.-+.+++++.|. ...+++.+.|.+|+|....|+=+++++|..-+ -.-.+|.+|.+-|....-.+-+ .....|
T Consensus 43 f~~r~il~r~~~~----~r~s~~~~~y~fH~y~~~~gl~yl~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~ 118 (199)
T 3kyq_A 43 FTSQLIVERSAKG----SRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPAT 118 (199)
T ss_dssp HHHHHHHHTSCTT----EEEEEECSSEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTT
T ss_pred HHHHHHHhcCCCC----CeEEEEeCCEEEEEEEecCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccccc
Confidence 4667888887662 45789999999999999999999999998744 4566888888655442211111 011122
Q ss_pred ccchhHHHHHHHHHHHhhh
Q psy15590 193 IRCELFDTHLQNLLQQHEK 211 (217)
Q Consensus 193 I~s~~Fd~~l~~ll~~~~~ 211 (217)
. .| ..+++++++++.
T Consensus 119 ~---~f-~~l~~~m~~Y~d 133 (199)
T 3kyq_A 119 I---HY-TALDGHLSRYQN 133 (199)
T ss_dssp C---CC-CTHHHHHHHTTS
T ss_pred c---cc-HHHHHHHHHhCC
Confidence 2 34 456667766654
No 10
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=91.61 E-value=1.6 Score=35.79 Aligned_cols=88 Identities=10% Similarity=0.127 Sum_probs=56.9
Q ss_pred HHHhhhCCCCCCCceeEEecCcEEEEEEEeCCCcEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCCCCCCCcccchh
Q psy15590 120 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPFYSLEMPIRCEL 197 (217)
Q Consensus 120 ~i~~kLsp~~~s~g~~~~~T~~yklh~yeT~TGiKFVlitd~~~~--~l~~~L~~IYelYvdyVlkNPfy~~~~pI~s~~ 197 (217)
.+-+|+.| +....+++.+.|.+| |..-.|+-|++++|..-+ -.-.+|.+|.+-|....- +.-....-+-.+..
T Consensus 32 ~iL~kip~---~~~k~s~~~~~y~fH-yl~~~gl~yl~i~d~~yp~r~af~fL~~i~~eF~~~~~-~~~~~~~~~~~~~~ 106 (189)
T 4b93_A 32 QILAKIPS---ENNKLTYSHGNYLFH-YICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYG-SRAQTALPYAMNSE 106 (189)
T ss_dssp HHHTTCCS---SSEEEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHG-GGGGTCCTTTTHHH
T ss_pred HHHHhCCC---CCCeEEEEECCEEEE-EEEeCCeEEEEEEcCccCHHHHHHHHHHHHHHHHhhcc-ccccccCCccccch
Confidence 34455544 346788999999999 677899999999998733 445677777744433210 11011111123457
Q ss_pred HHHHHHHHHHHhhhc
Q psy15590 198 FDTHLQNLLQQHEKT 212 (217)
Q Consensus 198 Fd~~l~~ll~~~~~~ 212 (217)
|+..+++.++.++.+
T Consensus 107 f~~~l~~~~~~y~d~ 121 (189)
T 4b93_A 107 FSSVLAAQLKHHSEN 121 (189)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHhhhcc
Confidence 999999999988653
No 11
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=86.62 E-value=7.4 Score=30.00 Aligned_cols=46 Identities=24% Similarity=0.433 Sum_probs=34.9
Q ss_pred eEEecCcEEEEEEEeCCCcEEEEEecCCch--hHHHHHHHHHHHHHhhh
Q psy15590 135 EVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYA 181 (217)
Q Consensus 135 ~~~~T~~yklh~yeT~TGiKFVlitd~~~~--~l~~~L~~IYelYvdyV 181 (217)
..++.+.+++ .|....++-|+++++.+++ .+-++|+++.++.-+|.
T Consensus 48 ~~~~~~~~~~-vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf 95 (142)
T 2vgl_S 48 NFVEFRNFKI-IYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYF 95 (142)
T ss_dssp SEEEETTEEE-EEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEECCEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456677765 5677789999999998755 45678888888888875
No 12
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=86.58 E-value=0.13 Score=37.08 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=29.8
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeee
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLT 97 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~ 97 (217)
++.|+++|+.+++|||++|.|... .+|.+.|. ++...+.|.
T Consensus 37 ~~aGl~~GD~Il~VNG~~v~~~~~---~evv~llr-~~g~~V~L~ 77 (82)
T 1r6j_A 37 ARNGLLTEHNICEINGQNVIGLKD---SQIADILS-TSGTVVTIT 77 (82)
T ss_dssp HHHTCCSSEEEEEETTEECTTCCH---HHHHHHHH-HSCSEEEEE
T ss_pred HHcCCCCCCEEEEECCEEcCCCCH---HHHHHHHh-cCCCEEEEE
Confidence 567999999999999999988653 34556665 444445554
No 13
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=85.72 E-value=2.9 Score=33.98 Aligned_cols=58 Identities=9% Similarity=0.153 Sum_probs=43.9
Q ss_pred HHHHHhhhCCCCCCCceeEEecCcEEEEEEEeCCCcEEEEEecCCch--hHHHHHHHHHHHHHh
Q psy15590 118 LFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYAD 179 (217)
Q Consensus 118 L~~i~~kLsp~~~s~g~~~~~T~~yklh~yeT~TGiKFVlitd~~~~--~l~~~L~~IYelYvd 179 (217)
.+.+.+|+.+. .+..+++.+.|.+|++. -.|+=|++++|..-+ -.-.+|.+|.+-|.+
T Consensus 72 ak~ll~kl~~~---~~r~s~~~~~y~fHyl~-~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~ 131 (169)
T 2vx8_A 72 TEQILAKIPSE---NNKLTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVKKRFQT 131 (169)
T ss_dssp HHHHHTTSCSS---CEEEEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCC---CCceEEEECCEEEEEEE-ECCEEEEEEEccccchHHHHHHHHHHHHHHHH
Confidence 46667777662 45688999999999998 479999999998733 456677777755544
No 14
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=84.30 E-value=0.32 Score=36.03 Aligned_cols=46 Identities=17% Similarity=0.432 Sum_probs=35.4
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCC---CCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPE---SFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~---n~Pl~l~~~~~ 101 (217)
+++| +++|-.+++|||.++.+...+ ++.+.|.... +.++.|.+.+.
T Consensus 55 ~~aG~l~~GD~Il~Vng~~~~~~~~~---~~~~~l~~~~~r~~~~~~l~v~R~ 104 (109)
T 1wi4_A 55 YKDGRLKPGDQLVSINKESMIGVSFE---EAKSIITRAKLRSESPWEIAFIRS 104 (109)
T ss_dssp HHHCSCCTTCBEEEETTSCCTTCCHH---HHHHHHHHSCCSSSSCEEEEEECC
T ss_pred HHCCCCCCCCEEEEECCEECCCCCHH---HHHHHHHccccCCCceEEEEEEeC
Confidence 5679 999999999999998875433 4666665555 88888887665
No 15
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=83.71 E-value=0.45 Score=33.56 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=34.2
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.|++.|-.+++|||.++.+.. -.++.+.|... ..++.|...+.
T Consensus 41 ~~aGl~~GD~I~~ing~~v~~~~---~~~~~~~l~~~-g~~v~l~v~r~ 85 (91)
T 2vsp_A 41 DLAGLEDEDVIIEVNGVNVLDEP---YEKVVDRIQSS-GKNVTLLVCGK 85 (91)
T ss_dssp HHTTCCTTCEEEEETTEECTTSC---HHHHHHHHTTS-CSEEEEEEEC-
T ss_pred HHcCCCCCCEEEEECCEECCCCC---HHHHHHHHHcC-CCEEEEEEEeC
Confidence 45689999999999999998643 34677777776 77888876554
No 16
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=83.67 E-value=0.52 Score=33.03 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=33.9
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.|++.|-.+++|||.++.+... .++.+.|... ..++.+...++
T Consensus 42 ~~aGl~~GD~I~~ing~~v~~~~~---~~~~~~l~~~-~~~v~l~v~r~ 86 (90)
T 2he4_A 42 ARSGLRAQDRLIEVNGQNVEGLRH---AEVVASIKAR-EDEARLLVVGP 86 (90)
T ss_dssp HHHTCCTTCEEEEETTEECTTSCH---HHHHHHHTTS-SSEEEEEEECC
T ss_pred HHCCCCCCCEEEEECCEECCCCCH---HHHHHHHHcC-CCcEEEEEEcc
Confidence 456899999999999999876432 4677777765 66777776655
No 17
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=82.39 E-value=15 Score=29.76 Aligned_cols=86 Identities=14% Similarity=0.244 Sum_probs=55.2
Q ss_pred HHHHhhhCCCCCCCceeEEecCcEEEEEEEeCCCcEEEEEecCCc--hhHHHHHHHHHHHHHh-hhhcCCCCCCCCcc-c
Q psy15590 119 FAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQ--SGLDLILKKIYELYAD-YALKNPFYSLEMPI-R 194 (217)
Q Consensus 119 ~~i~~kLsp~~~s~g~~~~~T~~yklh~yeT~TGiKFVlitd~~~--~~l~~~L~~IYelYvd-yVlkNPfy~~~~pI-~ 194 (217)
+.+.+|+.|. .+..+++.+.|.+|+... .|+-|++++|..- .-.-.+|.+|-+-|.. |- +-. ....|- -
T Consensus 83 ~~iL~kip~~---~~r~t~~~~~y~fHyl~~-dgl~yl~i~D~~~~rr~aF~FLedI~~eF~~~yg--~~~-~ta~pya~ 155 (173)
T 4afi_A 83 EQILAKIPSE---NNKLTYSHGNYLFHYICQ-DRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYG--SRA-QTALPYAM 155 (173)
T ss_dssp HHHHTTSCSS---SEEEEEEETTEEEEEEEE-TTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHG--GGG-GTCCTTTT
T ss_pred HHHHHhCCCC---CCeEEEEECCEEEEEEEE-CCEEEEEEECCccChhHHHHHHHHHHHHHHHHhc--hhh-hhccCcch
Confidence 3444555552 456789999999999984 8999999999874 3445567777644433 21 100 001111 1
Q ss_pred chhHHHHHHHHHHHhhh
Q psy15590 195 CELFDTHLQNLLQQHEK 211 (217)
Q Consensus 195 s~~Fd~~l~~ll~~~~~ 211 (217)
+..|...|++.++.++.
T Consensus 156 ~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 156 NSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 45799999999988764
No 18
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=82.29 E-value=0.4 Score=33.96 Aligned_cols=45 Identities=13% Similarity=0.339 Sum_probs=34.0
Q ss_pred cc-cceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QR-DGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~-~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++ -|+++|..+++|||.++.|...+ ++.+.|....+ ++.+...++
T Consensus 39 ~~~agL~~GD~I~~Ing~~v~~~~~~---~~~~~l~~~~~-~v~l~v~r~ 84 (88)
T 1kwa_A 39 HRQGTLHVGDEIREINGISVANQTVE---QLQKMLREMRG-SITFKIVPS 84 (88)
T ss_dssp HHHTCCCTTCEEEEETTEEGGGSCHH---HHHHHHHHCCE-EEEEEEECC
T ss_pred HHcCCCCCCCEEEEECCEECCCCCHH---HHHHHHhcCCC-cEEEEEECC
Confidence 45 47999999999999999875443 56677766655 888877665
No 19
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=79.68 E-value=21 Score=28.14 Aligned_cols=46 Identities=17% Similarity=0.243 Sum_probs=34.4
Q ss_pred eEEecCcEEEEEEEeCCCcEEEEEecCCch--hHHHHHHHHHHHHHhhh
Q psy15590 135 EVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYA 181 (217)
Q Consensus 135 ~~~~T~~yklh~yeT~TGiKFVlitd~~~~--~l~~~L~~IYelYvdyV 181 (217)
..++.+.+++ .|....++-|+++++.+++ .+-++|+++.++.-+|.
T Consensus 48 ~~i~~~~~~~-vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf 95 (158)
T 1w63_Q 48 SFLEWRDLKV-VYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYF 95 (158)
T ss_dssp SEEEETTEEE-EEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEECCEEE-EEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4566677775 5677789999999998754 45678888888777775
No 20
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=79.40 E-value=0.51 Score=33.42 Aligned_cols=45 Identities=24% Similarity=0.468 Sum_probs=32.1
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.| ++.|-.+++|||.++.|...+ ++.+.|....+ .+.+...++
T Consensus 35 ~~aG~L~~GD~Il~ing~~v~~~~~~---~~~~~i~~~~~-~v~L~v~~~ 80 (88)
T 3e17_A 35 TKDGNLHEGDIILKINGTVTENMSLT---DARKLIEKSRG-KLQLVVLRD 80 (88)
T ss_dssp HHHCCCCTTCEEEEETTEECTTCCHH---HHHHHHHHTTT-EEEEEECCC
T ss_pred HHcCCCCCCCEEEEECCEECCCCCHH---HHHHHHHcCCC-eEEEEEeCC
Confidence 5678 999999999999999876554 45555555443 666665544
No 21
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=78.06 E-value=1.4 Score=31.17 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=32.4
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.|++.|-.+++|||.++.+.... ++.+.+. ...++.|...+.
T Consensus 43 ~~aGL~~GD~I~~ing~~v~~~~~~---~~~~~~~--~g~~v~l~v~R~ 86 (93)
T 2dls_A 43 MKAGVKEGDRIIKVNGTMVTNSSHL---EVVKLIK--SGAYVALTLLGS 86 (93)
T ss_dssp TTTTCCSSCEEEEETTEECSSSCHH---HHHHHHT--SSSEEEEEEECC
T ss_pred HHcCCCCCCEEEEECCEECCCCCHH---HHHHhhc--CCCEEEEEEEEC
Confidence 4668999999999999999864322 4666665 367777766554
No 22
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=77.44 E-value=0.89 Score=32.19 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=33.3
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.|++.|-.+++|||.++.+... .++.+.|... ..++.|...+.
T Consensus 44 ~~aGl~~GD~I~~ing~~v~~~~~---~~~~~~l~~~-g~~v~l~v~r~ 88 (96)
T 2v90_A 44 KKAGMQAGDRLVAVAGESVEGLGH---EETVSRIQGQ-GSCVSLTVVDP 88 (96)
T ss_dssp HHTTCCTTEEEEEETTEECTTCCH---HHHHHHHHTT-TTEEEEEEECC
T ss_pred HHcCCCCCCEEEEECCEECCCCCH---HHHHHHHHcC-CCEEEEEEECC
Confidence 356899999999999999876322 3566777665 77888876654
No 23
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=77.33 E-value=0.79 Score=35.48 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=35.2
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.|++.|-.+++|||.++.+. +-.++.+.|..+...++.|...+.
T Consensus 78 ~~aGL~~GD~I~~vng~~v~~~---~~~~~~~~l~~~~g~~v~l~v~R~ 123 (139)
T 2vz5_A 78 EIAGLQIGDKIMQVNGWDMTMV---THDQARKRLTKRSEEVVRLLVTRQ 123 (139)
T ss_dssp HHHTCCTTCEEEEETTEECTTC---CHHHHHHHHCCTTCSEEEEEEEEC
T ss_pred HHCCCCCCCEEEEECCEEcCCC---CHHHHHHHHHhCCCCEEEEEEEEC
Confidence 4568999999999999998763 233677788776778888876554
No 24
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=77.04 E-value=0.77 Score=31.00 Aligned_cols=42 Identities=29% Similarity=0.450 Sum_probs=29.9
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeee
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTF 98 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~ 98 (217)
++.| ++.|-.+++|||.++.+.. -.++.+.+....+ ++.+..
T Consensus 35 ~~aG~l~~GD~I~~ing~~v~~~~---~~~~~~~l~~~~~-~v~l~v 77 (81)
T 2rcz_A 35 ARDGNIQEGDVVLKINGTVTENMS---LTDAKTLIERSKG-KLKMVV 77 (81)
T ss_dssp HHHSSCCTTCEEEEETTEECTTCC---HHHHHHHHHTSTT-EEEEEE
T ss_pred HHCCCCCCCCEEEEECCEECCCCC---HHHHHHHHHCCCC-eEEEEE
Confidence 4568 9999999999999987642 2356666665544 665554
No 25
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=76.73 E-value=0.92 Score=31.52 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=32.5
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++-|++.|-.+++|||.++.+.. -.++.+.|.... .++.+...+
T Consensus 40 ~~aGL~~GD~I~~ing~~v~~~~---~~~~~~~l~~~~-~~v~l~v~R 83 (87)
T 2pa1_A 40 KDADLRPGDIIVAINGESAEGML---HAEAQSKIRQSP-SPLRLQLDR 83 (87)
T ss_dssp HHTTCCTTCEEEEETTEESTTCC---HHHHHHHHHTCC-SSEEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCCCC---HHHHHHHHHcCC-CeEEEEEEe
Confidence 45689999999999999987532 235777777665 777776544
No 26
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=76.27 E-value=0.94 Score=32.66 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=33.5
Q ss_pred cc-cceeeeeeEEeeeceeecccccCCCcchhhhccCC-CCCCeeeeeCCC
Q psy15590 53 QR-DGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKP-ESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~-~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~-~n~Pl~l~~~~~ 101 (217)
++ -|+++|-.+++|||.++.|...+ ++.++|... ...++.|...+.
T Consensus 51 ~~~ggl~~GD~I~~Ing~~v~~~~~~---~~~~~l~~~~~g~~v~l~v~R~ 98 (101)
T 2yt7_A 51 ERSGALSIGDRLTAINGTSLVGLPLA---ACQAAVRETKSQTSVTLSIVHC 98 (101)
T ss_dssp GGGSSCCTTCEEEEESSCBCTTSCHH---HHHHHHHHTTTSSEEEEEECCC
T ss_pred HHcCCCCCCCEEEEECCEECCCCCHH---HHHHHHHhCCCCCeEEEEEEeC
Confidence 44 35999999999999999875443 566777653 566787776553
No 27
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=76.15 E-value=0.21 Score=37.48 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=30.3
Q ss_pred ccc-ceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRD-GILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~-~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++. |+++|-.+++|||.++.+...++=.+.+.-...+...++.|...+
T Consensus 57 ~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r 105 (118)
T 1v6b_A 57 ERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAV 105 (118)
T ss_dssp HHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEe
Confidence 456 999999999999999887544332222222212235677776554
No 28
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=75.73 E-value=1.4 Score=31.78 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=33.8
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++-|++.|-.+++|||.++.+.. =.++.++|... ..++.|...+.
T Consensus 43 ~~aGL~~GD~I~~ing~~v~~~~---~~~~~~~l~~~-g~~v~l~v~R~ 87 (103)
T 1v5l_A 43 AAANLCPGDVILAIDGFGTESMT---HADAQDRIKAA-SYQLCLKIDRA 87 (103)
T ss_dssp GGGTCCTTCBEEEETTEECSSCC---HHHHHHHHTTC-CSEEECEECCC
T ss_pred HHcCCCCCCEEEEECCEECCCCC---HHHHHHHHHhC-CCeEEEEEEEC
Confidence 45699999999999999987532 23577777766 77888877553
No 29
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.49 E-value=2.9 Score=29.53 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=43.0
Q ss_pred ceecccCccccccccCceeEEee------ccccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 29 AVTFQFPLNIKLTPENKKIVVSF------GQRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 29 ~~t~~~p~~~~l~~~~~~~~v~~------g~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
.|.-..+|.+.+...++.+.|.- .++.| ++.|-.+++|||.++ +...+ ++.++|... ..++.+...+.
T Consensus 13 ~k~~~~~lG~~i~~~~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~---~~~~~l~~~-~~~v~l~v~~~ 87 (91)
T 2e7k_A 13 RKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPR---ALQELLRNA-SGSVILKILSG 87 (91)
T ss_dssp CCCTTCCCCEEEEESSSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHH---HHHHHHHTC-CSSBCEEEECC
T ss_pred EECCCCcEeEEEEecCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHH---HHHHHHHcC-CCeEEEEEEEC
Confidence 34334566666665555555532 23435 999999999999999 75443 466666654 44677765543
No 30
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=75.41 E-value=1.4 Score=31.69 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=34.1
Q ss_pred ccccceeeeeeEEeeeceeecccccCCCcchhhhccCC-CCCCeeeeeCCC
Q psy15590 52 GQRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKP-ESFPVKLTFTRP 101 (217)
Q Consensus 52 g~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~-~n~Pl~l~~~~~ 101 (217)
-++-|++.|-.+++|||.+|.+... .++.+.|... ...++.|...|.
T Consensus 43 a~~aGL~~GD~I~~vng~~v~~~~~---~~~~~~l~~~~~g~~v~l~v~R~ 90 (96)
T 1ujv_A 43 QGCPGLCEGDLIVEINQQNVQNLSH---TEVVDILKDCPIGSETSLIIHRG 90 (96)
T ss_dssp GGSTTCCSSCEEEEETTEECSSCCH---HHHHHHHHHSCTTSEEEEEEECC
T ss_pred cccCCCCCCCEEEEECCEECCCCCH---HHHHHHHHcCCCCCEEEEEEEEC
Confidence 3567899999999999999886432 3566677664 367777766553
No 31
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=74.83 E-value=0.79 Score=33.48 Aligned_cols=46 Identities=28% Similarity=0.402 Sum_probs=33.8
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.| +++|-.+++|||.++.+...+ ++.+.|......++.|...++
T Consensus 58 ~~aG~L~~GD~Il~Vng~~v~~~~~~---~~~~~l~~~~~~~v~l~v~R~ 104 (108)
T 2d92_A 58 ERSGGLLPGDRLVSVNEYCLDNTSLA---EAVEILKAVPPGLVHLGICSG 104 (108)
T ss_dssp HHHTCCCTTCEEEEESSCBCTTCCHH---HHHHHHHHSCSEEEEEEEECC
T ss_pred HHCCCCCCCCEEEEECCEECCCCCHH---HHHHHHHhCCCCeEEEEEEcC
Confidence 5568 999999999999998864332 466677665445788777665
No 32
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=74.79 E-value=0.85 Score=34.63 Aligned_cols=45 Identities=9% Similarity=0.192 Sum_probs=34.0
Q ss_pred ccc-ceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRD-GILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~-~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++. |+++|-.+++|||.++.+... .++.+.|....+.++.|...+
T Consensus 71 ~~aggL~~GD~Il~Vng~~v~~~~~---~~~~~~l~~~~~~~v~l~v~r 116 (130)
T 1i16_A 71 EQSETVQPGDEILQLGGTAMQGLTR---FEAWNIIKALPDGPVTIVIRR 116 (130)
T ss_dssp SSSCCCCTTCCEEECSSCBGGGSCH---HHHHHHHHTSCSSEEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCCCceEEEEEEe
Confidence 466 999999999999999987532 357777777777777775544
No 33
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=74.75 E-value=1.4 Score=30.99 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=30.8
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.+.. -.++.+.+.. ...++.+...+
T Consensus 47 ~~aG~l~~GD~I~~vng~~v~~~~---~~~~~~~l~~-~g~~v~l~v~R 91 (96)
T 1d5g_A 47 ESDGRIHKGDRVLAVNGVSLEGAT---HKQAVETLRN-TGQVVHLLLEK 91 (96)
T ss_dssp HHTTCCCTTCEEEEETTEECTTCC---HHHHHHHHHS-CCSEEEEEEEC
T ss_pred HHcCCCCCCCEEEEECCEECCCCC---HHHHHHHHHc-CCCeEEEEEEc
Confidence 4578 9999999999999988642 2345566655 34566665544
No 34
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=74.60 E-value=1.2 Score=30.98 Aligned_cols=44 Identities=9% Similarity=0.176 Sum_probs=31.2
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.++.+..+ .++.+.+... ..++.+...+
T Consensus 41 ~~aGl~~GD~I~~ing~~v~~~~~---~~~~~~~~~~-g~~v~l~v~R 84 (88)
T 2uzc_A 41 AQANVRIGDVVLSIDGINAQGMTH---LEAQNKIKGC-TGSLNMTLQR 84 (88)
T ss_dssp HHTTCCTTCEEEEETTEECTTCCH---HHHHHHHHTC-CSEEEEEEEC
T ss_pred HHcCCCCCCEEEEECCEECCCCCH---HHHHHHHHhC-CCeEEEEEEe
Confidence 456999999999999999886432 2455666554 5677666544
No 35
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=74.53 E-value=0.95 Score=32.44 Aligned_cols=43 Identities=19% Similarity=0.168 Sum_probs=32.0
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeee
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTF 98 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~ 98 (217)
++.|++.|-.+++|||.++.+... .++.+.+..+...++.+..
T Consensus 59 ~~aGl~~GD~I~~ing~~v~~~~~---~~~~~~l~~~~g~~v~l~v 101 (104)
T 3sfj_A 59 EIAGLQIGDKIMQVNGWDMTMVTH---DQARKRLTKRSEEVVRLLV 101 (104)
T ss_dssp HHHTCCTTCEEEEETTEECTTCCH---HHHHHHHTCTTCSEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCCCCEEEEEE
Confidence 456999999999999999875432 2577777766666776654
No 36
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=74.30 E-value=1.5 Score=31.35 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=32.6
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.| ++.|-.+++|||.+|.+... .++.++|....+ ++.+...+.
T Consensus 53 ~~aG~l~~GD~I~~ing~~v~~~~~---~~~~~~l~~~~~-~v~l~v~r~ 98 (103)
T 2fcf_A 53 GKNGTLKPGDRIVEVDGMDLRDASH---EQAVEAIRKAGN-PVVFMVQSI 98 (103)
T ss_dssp HHHCCCCTTCEEEEETTEECTTCCH---HHHHHHHHTCCS-SEEEEEECC
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCCC-cEEEEEEEC
Confidence 4568 99999999999999876332 357777766644 777765443
No 37
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.24 E-value=0.93 Score=34.09 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=33.2
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.|++.|-.+++|||.+|.+...+ ++.+.|... ..++.|...+.
T Consensus 75 ~~aGL~~GD~I~~ing~~v~~~~~~---~~~~~l~~~-g~~v~l~v~r~ 119 (126)
T 2yuy_A 75 FEAGLCTGDRIIKVNGESVIGKTYS---QVIALIQNS-DTTLELSVMPK 119 (126)
T ss_dssp HHHTCCSSCCCCEETTEECSSCCHH---HHHHHHHTC-TTEEEEECCCC
T ss_pred HHcCCCCCCEEEEECCEECCCCCHH---HHHHHHHcC-CCEEEEEEEEC
Confidence 4669999999999999999865433 566666654 67777766554
No 38
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=73.98 E-value=0.89 Score=31.85 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=31.5
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.++.+.... ++.+.+.. ...++.+...+
T Consensus 41 ~~aGl~~GD~I~~ing~~v~~~~~~---~~~~~l~~-~g~~v~l~v~R 84 (91)
T 2pkt_A 41 ALANLCIGDVITAIDGENTSNMTHL---EAQNRIKG-CTDNLTLTVAR 84 (91)
T ss_dssp HHTTCCTTCEEEEETTEECTTCCHH---HHHHHHHT-CSSEEEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCCCCHH---HHHHHHHc-CCCeEEEEEEE
Confidence 4569999999999999998753221 56666666 66677776544
No 39
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=73.95 E-value=1.5 Score=32.68 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=34.6
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++-|++.|-.+++|||.+|.+.. -.++.+.|....+.++.+...++
T Consensus 58 ~~AGL~~GD~Il~VnG~~v~~~~---~~dv~~~i~~~~~~~v~l~V~~~ 103 (109)
T 2vsv_A 58 SVAGAREGDYIVSIQLVDCKWLT---LSEVMKLLKSFGEDEIEMKVVSL 103 (109)
T ss_dssp HHTTCCTTCEEEEETTEECTTCC---HHHHHHHHHTTTTSCEEEEEESC
T ss_pred HHcCCCCCCEEEEECCEECCCCC---HHHHHHHHHhCCCCeEEEEEEEC
Confidence 45699999999999999987532 23566777777777788876554
No 40
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=73.87 E-value=1.4 Score=33.93 Aligned_cols=47 Identities=23% Similarity=0.322 Sum_probs=35.4
Q ss_pred ccccc-eeeeeeEEeeeceeecccccCCCcchhhhccC-CCCCCeeeeeCCC
Q psy15590 52 GQRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSK-PESFPVKLTFTRP 101 (217)
Q Consensus 52 g~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~-~~n~Pl~l~~~~~ 101 (217)
.++.| ++.|-.+++|||.+|.|... .++.++|.+ +...++.|...|.
T Consensus 62 A~~aG~L~~GD~Il~VnG~~v~~~s~---~d~~~~l~~~~~G~~v~l~V~R~ 110 (126)
T 1wif_A 62 AASDGILQPGDVLISVGHANVLGYTL---REFLKLLQNITIGTVLQIKAYRG 110 (126)
T ss_dssp GGGCSSSCTTCBEEEESSSCCTTCCH---HHHHHHHTSCCSSCEEEEEEESS
T ss_pred HHHcCCCCCCCEEEEECCEEcCCCCH---HHHHHHHhcCCCCCEEEEEEEEC
Confidence 35678 99999999999999876433 357777776 5577888876554
No 41
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=73.52 E-value=1 Score=31.49 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=30.0
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeee
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTF 98 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~ 98 (217)
++.|++.|-.+++|||.++.+.... ++.+.+....+....+..
T Consensus 41 ~~aGL~~GD~I~~ing~~v~~~~~~---~~~~~l~~~~~~~~~~~~ 83 (91)
T 1g9o_A 41 EKAGLLAGDRLVEVNGENVEKETHQ---QVVSRIRAALNAVRLLVV 83 (91)
T ss_dssp HHTTCCTTCEEEEETTEECTTCCHH---HHHHHHHTCSSEEEEEEE
T ss_pred HHCCCCCCCEEEEECCEECCCCCHH---HHHHHHHcCCCcEEEEEE
Confidence 4568999999999999998764322 466666665555544443
No 42
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=73.27 E-value=1.1 Score=33.56 Aligned_cols=43 Identities=23% Similarity=0.416 Sum_probs=32.6
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.+|.. -.++.++|......++.|...+
T Consensus 62 ~~aG~l~~GD~I~~ing~~v~~-----~~~~~~~l~~~~g~~v~l~v~R 105 (124)
T 1wh1_A 62 AKDGRIREGDRIIQINGIEVQN-----REEAVALLTSEENKNFSLLIAR 105 (124)
T ss_dssp HHTCCCCTTCEEEEESSCBCCS-----HHHHHHHHTCSSCCSCCEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCC-----HHHHHHHHHhCCCCEEEEEEEE
Confidence 4568 99999999999999873 3477788877656677665544
No 43
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=73.08 E-value=1.1 Score=33.42 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=32.8
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.| +++|-.+++|||.+|.|...+ ++.+.|. +...++.|...+.
T Consensus 56 ~~aG~l~~GD~Il~Ing~~v~~~~~~---~~~~~l~-~~g~~v~l~v~r~ 101 (117)
T 1v62_A 56 DRSGALHPGDHILSIDGTSMEHCSLL---EATKLLA-SISEKVRLEILPV 101 (117)
T ss_dssp HHHTCCCTTCBEEEETTEETTSCCHH---HHHHHHH-SCSSEEEEEECCB
T ss_pred HHcCCCCCCCEEEEECCEECCCCCHH---HHHHHHH-hCCCeEEEEEEEC
Confidence 4568 999999999999999875443 4666666 3566777766543
No 44
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=72.26 E-value=1.4 Score=30.68 Aligned_cols=44 Identities=32% Similarity=0.529 Sum_probs=31.6
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.+... .++.+.|..... ++.+...+
T Consensus 37 ~~aG~l~~GD~I~~ing~~v~~~~~---~~~~~~l~~~~~-~v~l~v~r 81 (92)
T 3cyy_A 37 ARDGNIQEGDVVLKINGTVTENMSL---TDAKTLIERSKG-KLKMVVQR 81 (92)
T ss_dssp HHSCCCCTTCEEEEETTEECTTCCH---HHHHHHHHTTTT-EEEEEEEC
T ss_pred HhcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHcCCC-cEEEEEEe
Confidence 4568 99999999999999875433 356666766444 77776654
No 45
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=72.11 E-value=1.9 Score=30.43 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=32.6
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++-|++.|-.+++|||.++.+... .++.+++.... .++.|...|.
T Consensus 44 ~~aGL~~GD~I~~ing~~v~~~~~---~~~~~~l~~~~-~~v~l~v~R~ 88 (94)
T 1vb7_A 44 EAADLRPGDIIVAINGQSAENMLH---AEAQSKIRQSA-SPLRLQLDRS 88 (94)
T ss_dssp HHHTCCTTCEEEEETTEECTTCCH---HHHHHHHHTCC-SSEEEEEECC
T ss_pred HHCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCC-CcEEEEEEEC
Confidence 355899999999999999875322 35667776655 7777766554
No 46
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=71.94 E-value=0.7 Score=33.13 Aligned_cols=42 Identities=19% Similarity=0.383 Sum_probs=29.1
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeee
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTF 98 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~ 98 (217)
++.|++.|-.+++|||.+|.+.... ++.+.|.. ...++.|..
T Consensus 45 ~~aGL~~GD~Il~Ing~~v~~~~~~---~~~~~l~~-~g~~v~l~v 86 (90)
T 1y7n_A 45 ERGGVRVGHRIIEINGQSVVATPHE---KIVHILSN-AVGEIHMKT 86 (90)
T ss_dssp HHHTCCSSCEEEEETTEECTTSCHH---HHHHHHHH-CCEEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCCCCHH---HHHHHHHc-CCCeEEEEE
Confidence 4669999999999999999764333 45555543 245565554
No 47
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=71.47 E-value=0.84 Score=32.21 Aligned_cols=45 Identities=20% Similarity=0.468 Sum_probs=32.2
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.| ++.|-.+++|||.++.|...+ ++.+.|....+ ++.+...+.
T Consensus 42 ~~aG~L~~GD~I~~ing~~v~~~~~~---~~~~~l~~~~~-~v~l~v~~~ 87 (93)
T 3o46_A 42 DRSGLIHVGDELREVNGIPVEDKRPE---EIIQILAQSQG-AITFKIIPG 87 (93)
T ss_dssp HHHTCCCTTCEEEEETTEESTTSCHH---HHHHHHHHCCE-EEEEEEECC
T ss_pred HHcCCCCCCCEEEEECCEECCCCCHH---HHHHHHHhCCC-eEEEEEEeC
Confidence 3458 999999999999999775443 46666655554 677765443
No 48
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=71.33 E-value=1.3 Score=32.52 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=32.8
Q ss_pred ccccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 52 GQRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 52 g~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
.++.|++.|-.+++|||.+|.+... .++.+.+... ..++.|...+
T Consensus 51 A~~aGL~~GD~I~~ing~~v~~~~~---~~~~~~l~~~-g~~v~l~v~R 95 (114)
T 2edz_A 51 AEKAGLLDGDRVLRINGVFVDKEEH---AQVVELVRKS-GNSVTLLVLD 95 (114)
T ss_dssp TGGGTCCTTCEEEEESSSBCSSSCH---HHHHHHHHHT-CSEEEEEEEC
T ss_pred HHHcCCCCCCEEEEECCEECCCCCH---HHHHHHHHcC-CCEEEEEEEE
Confidence 3566899999999999999886322 3566666543 6778887655
No 49
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=71.18 E-value=0.81 Score=32.41 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=31.4
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.+.. -.++.+.|.. ...++.|...+
T Consensus 46 ~~aG~l~~GD~I~~ing~~v~~~~---~~~~~~~l~~-~g~~v~l~v~R 90 (97)
T 2jil_A 46 DREGTIKPGDRLLSVDGIRLLGTT---HAEAMSILKQ-CGQEAALLIEY 90 (97)
T ss_dssp HHHCCCCTTCEEEEETTEECSSCC---HHHHHHHHHH-SCSEEEEEEEE
T ss_pred HHCCCCCCCCEEEEECCEECCCCC---HHHHHHHHHc-CCCeEEEEEEe
Confidence 4558 9999999999999987632 2356666665 56677665543
No 50
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=70.14 E-value=1.1 Score=32.68 Aligned_cols=46 Identities=24% Similarity=0.267 Sum_probs=33.4
Q ss_pred cccce-eeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDGI-LVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~~-~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.|+ +.|-.+++|||.++.+.. -.++.+.+....+.++.+...+.
T Consensus 40 ~~aGll~~GD~I~~ing~~v~~~~---~~~~~~~l~~~~g~~v~l~v~R~ 86 (112)
T 1qau_A 40 EQSGLIQAGDIILAVNDRPLVDLS---YDSALEVLRGIASETHVVLILRG 86 (112)
T ss_dssp HHHTCCCTTCEEEEETTEECTTSC---HHHHHHHHHHSCSSSEEEEEEEC
T ss_pred HHcCCCCCCCEEEEECCEECCCCC---HHHHHHHHHhCCCCcEEEEEEeC
Confidence 45687 999999999999987632 23566677666667777766543
No 51
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=69.68 E-value=0.81 Score=32.53 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=31.1
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeee
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTF 98 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~ 98 (217)
++.|++.|-.+++|||.++.+.. -.++.+.|....+.++.+..
T Consensus 47 ~~aGl~~GD~I~~ing~~v~~~~---~~~~~~~l~~~~~~~~~l~v 89 (98)
T 2jxo_A 47 EASGLRAQDRIVEVNGVCMEGKQ---HGDVVSAIRAGGDETKLLVV 89 (98)
T ss_dssp HHHTCCTTCEEEEETTEECTTCC---HHHHHHHHHTTTTEEEEEEC
T ss_pred HHcCCCCCCEEEEECCEECCCCC---HHHHHHHHHhCCCcEEEEEE
Confidence 45689999999999999987532 23566777766666665654
No 52
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=69.42 E-value=1.6 Score=29.99 Aligned_cols=42 Identities=24% Similarity=0.364 Sum_probs=28.8
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCC-CCCCeeee
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKP-ESFPVKLT 97 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~-~n~Pl~l~ 97 (217)
++.| ++.|-.+++|||.++.+... .++.++|... ...++.+.
T Consensus 39 ~~aG~l~~GD~I~~vng~~v~~~~~---~~~~~~l~~~~~g~~v~l~ 82 (85)
T 2i04_A 39 ALDGKMETGDVIVSVNDTCVLGHTH---AQVVKIFQSIPIGASVDLE 82 (85)
T ss_dssp HHHCCCCTTCEEEEETTEECTTCCH---HHHHHHHHTSCTTCEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCCCCCeEEEE
Confidence 4568 99999999999999876322 2455666553 24555554
No 53
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=69.36 E-value=1.5 Score=30.74 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=29.7
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.+... .++.+.+..... ++.+...+
T Consensus 47 ~~aG~l~~GD~I~~vng~~v~~~~~---~~~~~~~~~~~~-~v~l~v~R 91 (94)
T 2fe5_A 47 QKDGRLQIGDRLLAVNNTNLQDVRH---EEAVASLKNTSD-MVYLKVAK 91 (94)
T ss_dssp HHHCCCCTTCEEEEETTEECTTCBH---HHHHHHHHTCCS-EEEEEEEC
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHcCCC-eEEEEEEc
Confidence 4568 99999999999999876422 245555554433 66665543
No 54
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=69.22 E-value=2.2 Score=30.60 Aligned_cols=41 Identities=17% Similarity=0.322 Sum_probs=31.9
Q ss_pred ceeeeeeEEeeeceeecccccCCCcchhhhccCC-CCCCeeeeeCCC
Q psy15590 56 GILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKP-ESFPVKLTFTRP 101 (217)
Q Consensus 56 ~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~-~n~Pl~l~~~~~ 101 (217)
|++.|=.+++|||.++.. -.++.++|... ...++.|...|.
T Consensus 17 GL~~GD~I~~InG~~v~~-----~~~l~~~l~~~~~g~~v~l~v~R~ 58 (91)
T 2kjp_A 17 KIEVGDKIISADGKNYQS-----AEKLIDYISSKKAGDKVTLKIERE 58 (91)
T ss_dssp CCCSSCEEEEETTBCCSS-----HHHHHHHHSSCCSSCEECEEEESS
T ss_pred cCCCCCEEEEECCEECCC-----HHHHHHHHHcCCCCCEEEEEEEEC
Confidence 899999999999999863 34677777765 577788776653
No 55
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=69.14 E-value=1.7 Score=31.37 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=30.3
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.+|.+... .++.++|.. ..++.|...+
T Consensus 55 ~~aGL~~GD~I~~ing~~v~~~~~---~~~~~~l~~--~~~v~l~v~r 97 (104)
T 1wi2_A 55 HRAGLQEGDQVLAVNDVDFQDIEH---SKAVEILKT--AREISMRVRF 97 (104)
T ss_dssp HHHTCCTTCEEEEETTEECSSCCH---HHHHHHHHH--SSSEEEEEEC
T ss_pred HHcCCCCCCEEEEECCEECCCCCH---HHHHHHHhC--CCEEEEEEEE
Confidence 356899999999999999876322 356666665 4566665543
No 56
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=69.01 E-value=1.2 Score=32.55 Aligned_cols=46 Identities=30% Similarity=0.394 Sum_probs=32.9
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCC--CCCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKP--ESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~--~n~Pl~l~~~~~ 101 (217)
++.| ++.|-.+++|||.++.+... .++.+.|... ...++.|...++
T Consensus 47 ~~aG~L~~GD~Il~Vng~~v~~~~~---~~~~~~l~~~~~~~~~v~l~v~R~ 95 (108)
T 3cbz_A 47 AADGRIEPGDMLLQVNDMNFENMSN---DDAVRVLRDIVHKPGPIVLTVAKS 95 (108)
T ss_dssp HHHCCCCTTCEEEEETTEETTSCCH---HHHHHHHHHHHTSSSCEEEEEECC
T ss_pred HhcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhcccCCCeEEEEEEeC
Confidence 5679 99999999999999887432 3566666554 334677766554
No 57
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=68.99 E-value=1.4 Score=30.70 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=28.6
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeee
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTF 98 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~ 98 (217)
++.|++.|-.+++|||.++.+. +-.++.+.+... ..++.+..
T Consensus 41 ~~aGl~~GD~I~~ing~~v~~~---~~~~~~~~~~~~-g~~v~l~v 82 (89)
T 2q3g_A 41 AQAGVAVGDWVLSIDGENAGSL---THIEAQNKIRAC-GERLSLGL 82 (89)
T ss_dssp HHTTCCTTCEEEEETTEEGGGC---CHHHHHHHHHTC-TTEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCCC---CHHHHHHHHHhC-CCEEEEEE
Confidence 4669999999999999999864 222455555543 44555544
No 58
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=68.17 E-value=1.2 Score=33.42 Aligned_cols=44 Identities=32% Similarity=0.380 Sum_probs=31.8
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|..+++|||.++.+... .++.++|.. ...++.|...+
T Consensus 60 ~~aG~L~~GD~I~~vng~~v~~~~~---~~~~~~l~~-~~~~v~l~v~R 104 (129)
T 2dmz_A 60 YHNGHIQVNDKIVAVDGVNIQGFAN---HDVVEVLRN-AGQVVHLTLVR 104 (129)
T ss_dssp HHHTCCCSSCBEEEETTBCCTTCCH---HHHHHHHHH-CCSSEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHc-CCCeEEEEEEe
Confidence 4568 99999999999999886433 356666665 56677765543
No 59
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=67.86 E-value=1.2 Score=32.61 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=43.4
Q ss_pred ccccceecccCccccccc-cCceeEEee------ccccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeee
Q psy15590 25 KIENAVTFQFPLNIKLTP-ENKKIVVSF------GQRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKL 96 (217)
Q Consensus 25 ~~~~~~t~~~p~~~~l~~-~~~~~~v~~------g~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l 96 (217)
..+.+|.-.-+|.+.+.. .++.+.|.- .++.| +++|-.+++|||.+|.+...+ ++.+.|... ..++.|
T Consensus 15 ~v~l~K~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~---~~~~~l~~~-~~~v~L 90 (97)
T 2ejy_A 15 LIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVD---QLQKAMKET-KGMISL 90 (97)
T ss_dssp EEEEEECSSSCCSEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSH---HHHHHHHHC-CEEEEE
T ss_pred EEEEEeCCCCCeeEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHH---HHHHHHHcC-CCeEEE
Confidence 334455555566666654 334454432 35669 999999999999998864333 455555543 346666
Q ss_pred eeC
Q psy15590 97 TFT 99 (217)
Q Consensus 97 ~~~ 99 (217)
...
T Consensus 91 ~V~ 93 (97)
T 2ejy_A 91 KVI 93 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 60
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.26 E-value=2.4 Score=29.86 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=29.8
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.++.+. +-.++.+.+.. ...++.+...+
T Consensus 46 ~~aGl~~GD~I~~ing~~v~~~---~~~~~~~~~~~-~g~~v~l~v~R 89 (94)
T 2eeg_A 46 ALAALCPGDLIQAINGESTELM---THLEAQNRIKG-CHDHLTLSVSS 89 (94)
T ss_dssp HHTTCCTTCEEEEETTEETTTC---CHHHHHHHHHT-CCSCEEEEEEC
T ss_pred HHcCCCCCCEEEEECCEECCCC---CHHHHHHHHHc-CCCeEEEEEEe
Confidence 4569999999999999998753 11245555544 34566666544
No 61
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=67.23 E-value=1.7 Score=31.31 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=31.6
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.| ++.|-.+++|||.++.+... .++...+... ..++.|...+.
T Consensus 47 ~~aG~L~~GD~I~~vng~~v~~~~~---~~~~~~~~~~-~~~v~l~v~R~ 92 (105)
T 2awx_A 47 HKDGKLQIGDKLLAVNSVSLEEVTH---EEAVTALKNT-SDFVYLKVAKP 92 (105)
T ss_dssp HHHCCCCTTCEEEEETTEECTTCBH---HHHHHHHHSC-CSEEEEEEECC
T ss_pred HHCCCCCCCCEEEEECCEECCCCCH---HHHHHHHHcC-CCeEEEEEEcC
Confidence 4679 99999999999999886422 2355555444 46777766554
No 62
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=66.74 E-value=1.1 Score=31.68 Aligned_cols=44 Identities=18% Similarity=0.419 Sum_probs=29.9
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.+.... ++.+.+.. ...++.|...+
T Consensus 51 ~~aG~L~~GD~I~~ing~~v~~~~~~---~~~~~l~~-~g~~v~l~v~R 95 (98)
T 1ihj_A 51 HLCGRLKVGDRILSLNGKDVRNSTEQ---AVIDLIKE-ADFKIELEIQT 95 (98)
T ss_dssp HHHCSCCTTCEEEEETTEECTTCCHH---HHHHHHHH-SCSEEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCHH---HHHHHHhc-CCCeEEEEEEe
Confidence 3558 999999999999998764322 45555554 45666665533
No 63
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=66.74 E-value=2 Score=31.29 Aligned_cols=45 Identities=24% Similarity=0.463 Sum_probs=31.2
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.| ++.|-.+++|||.+|.+...+ ++.+.+..... ++.+...+.
T Consensus 46 ~~aG~L~~GD~Il~Vng~~v~~~~~~---~~~~~l~~~~~-~v~l~v~R~ 91 (106)
T 4amh_A 46 HKDGKLQIGDKLLAVNNVALEEVTHE---EAVTALKNTSD-FVYLKVAKP 91 (106)
T ss_dssp HHHCCCCTTCEEEEETTEECSSCCHH---HHHHHHHSCCS-EEEEEEECC
T ss_pred HHCCCCCCCCEEEEECCEECCCCCHH---HHHHHHhCCCC-eEEEEEEeC
Confidence 4579 999999999999999873322 45555555433 677766554
No 64
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=66.37 E-value=2.4 Score=30.30 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=28.9
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++ |++.|-.+++|||.++.+... .++...+. +...++.|...+
T Consensus 57 ~~-gL~~GD~I~~vng~~v~~~~~---~~~~~~~~-~~g~~v~l~v~R 99 (103)
T 1n7t_A 57 SK-LLQPGDKIIQANGYSFINIEH---GQAVSLLK-TFQNTVELIIVR 99 (103)
T ss_dssp SS-SCCTTCEEEEETTEECSSCCH---HHHHHHHH-HCCSEEEEEEEC
T ss_pred HH-CCCCCCEEEEECCEECCCCCH---HHHHHHhh-cCCCeEEEEEEe
Confidence 45 999999999999999876332 23444444 335666666544
No 65
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=66.31 E-value=1.4 Score=32.94 Aligned_cols=46 Identities=24% Similarity=0.267 Sum_probs=34.7
Q ss_pred cccce-eeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDGI-LVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~~-~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.|+ +.|-.+++|||.++.+.. -.++.+.|.+..+.++.+...+.
T Consensus 47 ~~aGll~~GD~I~~ing~~v~~~~---~~~~~~~l~~~~g~~v~l~v~R~ 93 (127)
T 1b8q_A 47 EQSGLIQAGDIILAVNDRPLVDLS---YDSALEVLRGIASETHVVLILRG 93 (127)
T ss_dssp HHHSSCCTTTCCCEETTEECSSSC---HHHHHHHHHSCCSSCEEEEEECC
T ss_pred HHcCCCCCCCEEEEECCEECCCCC---HHHHHHHHHhCCCCeEEEEEEeC
Confidence 45688 999999999999987632 23677777776677888876654
No 66
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=66.19 E-value=2.7 Score=31.04 Aligned_cols=44 Identities=14% Similarity=0.235 Sum_probs=31.1
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.+... .++.+.|.. ...++.|...+
T Consensus 63 ~~aG~L~~GD~Il~vng~~v~~~~~---~~~~~~l~~-~~~~v~l~v~R 107 (117)
T 1ujd_A 63 EQTGKLMEGMQVLEWNGIPLTSKTY---EEVQSIISQ-QSGEAEICVRL 107 (117)
T ss_dssp HHHSSCCTTCEEEEETTEECTTCCH---HHHHHHHSC-CSSCEEEEEES
T ss_pred HHcCCCCCCCEEEEECCEEcCCCCH---HHHHHHHhc-CCCEEEEEEEE
Confidence 4668 99999999999999886433 346666665 44566665443
No 67
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=66.12 E-value=2.2 Score=31.27 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=32.8
Q ss_pred cc-cceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QR-DGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~-~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++ -|+++|-.+++|||.+|.+... .++.++|.. ...++.|...+.
T Consensus 57 ~~~agL~~GD~I~~ing~~v~~~~~---~~~~~~l~~-~g~~v~l~v~r~ 102 (114)
T 1uew_A 57 DRCAKLKVGDRILAVNGQSIINMPH---ADIVKLIKD-AGLSVTLRIIPQ 102 (114)
T ss_dssp GGGSSCCTTCBEEEETTBCTTTSCH---HHHHHHHHH-TTTEEEEEECCC
T ss_pred HHhCCCCCCCEEEEECCEECCCCCH---HHHHHHHHc-CCCeEEEEEEeC
Confidence 45 6999999999999999876322 356666665 667777766554
No 68
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=65.86 E-value=1.8 Score=32.42 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=29.6
Q ss_pred cccc-eeeeeeEEeeeceeec-ccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIK-NGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~-~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.+|. +...+ ++.+.|.. ...++.|...+
T Consensus 68 ~~aG~L~~GD~Il~ing~~v~~~~~~~---~~~~~l~~-~~~~v~l~v~r 113 (128)
T 2db5_A 68 DRDQRLKENDQILAINHTPLDQNISHQ---QAIALLQQ-TTGSLRLIVAR 113 (128)
T ss_dssp HHTCCCCSSCBEEEESSCBCSTTSCHH---HHHHHHHH-CCSEEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCCHH---HHHHHHHc-CCCeEEEEEEc
Confidence 4679 9999999999999986 64433 45555544 33556554433
No 69
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=65.56 E-value=1.7 Score=30.25 Aligned_cols=43 Identities=12% Similarity=0.254 Sum_probs=30.2
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++-|++.|-.+++|||.++.. -.++.+.+......++.+...|
T Consensus 18 ~~aGl~~GD~I~~ing~~v~~-----~~~~~~~l~~~~g~~v~l~v~R 60 (91)
T 2zpm_A 18 SXAGLQAGDRIVXVDGQPLTQ-----WVTFVMLVRDNPGXSLALEIER 60 (91)
T ss_dssp HHTTCCTTCEEEEETTEECCC-----HHHHHHHHHHCTTCCEEEEEEE
T ss_pred HhcCCCCCCEEEEECCeEcCC-----HHHHHHHHhcCCCCeEEEEEEE
Confidence 456999999999999999863 2356666655555566665543
No 70
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=65.54 E-value=2 Score=30.44 Aligned_cols=44 Identities=25% Similarity=0.478 Sum_probs=31.1
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.+... .++.+.+. ....++.|...+
T Consensus 44 ~~aG~l~~GD~I~~vng~~v~~~~~---~~~~~~l~-~~g~~v~l~v~R 88 (97)
T 1n7e_A 44 ERTGAIHIGDRILAINSSSLKGKPL---SEAIHLLQ-MAGETVTLKIKK 88 (97)
T ss_dssp HHHTCCCTTCEEEEETTEECTTCCH---HHHHHHHH-TCCSEEEEEEEC
T ss_pred HHCCCCCCCCEEEEECCEECCCCCH---HHHHHHHH-cCCCeEEEEEEe
Confidence 4558 99999999999999886432 24556665 455666666544
No 71
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=65.52 E-value=1.6 Score=30.49 Aligned_cols=43 Identities=26% Similarity=0.378 Sum_probs=29.7
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFT 99 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~ 99 (217)
++.| ++.|-.+++|||.++.+.... ++.+.+.. ...++.|...
T Consensus 47 ~~aG~l~~GD~I~~vng~~v~~~~~~---~~~~~~~~-~~~~v~l~v~ 90 (97)
T 2iwn_A 47 EHDGRIQIGDQIIAVDGTNLQGFTNQ---QAVEVLRH-TGQTVLLTLM 90 (97)
T ss_dssp HHHCCCCTTCEEEEETTEECTTSCHH---HHHHHHHT-CCSEEEEEEE
T ss_pred HhCCCCCCCCEEEEECCEECCCCCHH---HHHHHHHc-CCCeEEEEEE
Confidence 4568 999999999999998864322 45555554 5566666543
No 72
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=65.14 E-value=2.1 Score=32.00 Aligned_cols=45 Identities=22% Similarity=0.426 Sum_probs=32.1
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCC-CCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPE-SFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~-n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.+|.+... .++.++|.... ..++.|...+
T Consensus 58 ~~aG~L~~GD~Il~Vng~~v~~~~~---~~~~~~l~~~~~g~~v~l~v~R 104 (123)
T 1ueq_A 58 AQDGKMETGDVIVYINEVCVLGHTH---ADVVKLFQSVPIGQSVNLVLCR 104 (123)
T ss_dssp HHTSCCCTTCEEEEETTEECTTSCH---HHHHHHHHTSCTTCEEEEEEEE
T ss_pred HHCCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCCCCCeEEEEEEe
Confidence 4568 99999999999999886432 35666776643 6677665543
No 73
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=64.71 E-value=1.5 Score=32.63 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=33.9
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.++.+.. -.++.++|....+.++.+...+
T Consensus 47 ~~aGl~~GD~I~~ing~~v~~~~---~~~~~~~l~~~~~~~~~l~v~R 91 (128)
T 2kjd_A 47 EASGLRAQDRIVEVNGVCMEGKQ---HGDVVSAIRAGGDETKLLVVDR 91 (128)
T ss_dssp HHHTCCTTCEEEEETTEECTTCC---HHHHHHHHHTTCSEEEEEEECH
T ss_pred HHcCCCCCCEEEEECCEECCCCC---HHHHHHHHHhCCCCEEEEEEEe
Confidence 45689999999999999987532 2357777777777777776644
No 74
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=64.22 E-value=2 Score=30.68 Aligned_cols=43 Identities=16% Similarity=0.364 Sum_probs=31.9
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCC-CCCCeeeeeCCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKP-ESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~-~n~Pl~l~~~~~ 101 (217)
++ |++.|=.+++|||.++.. -.++.+++... .+.++.+.+.|.
T Consensus 19 ~~-GL~~GD~Il~InG~~v~~-----~~~l~~~l~~~~~g~~v~l~v~R~ 62 (94)
T 2kl1_A 19 AG-RLEAGDRIAAIDGQPINT-----SEQIVSYVREKQAGDRVRVTFIRD 62 (94)
T ss_dssp BT-TBCTTCEEEEETTBCCCC-----HHHHHHHHHHSCTTCCEEEEEEET
T ss_pred Hh-CCCCCCEEEEECCEECCC-----HHHHHHHHHhCCCCCEEEEEEEEC
Confidence 35 899999999999999864 24666777654 577888876553
No 75
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=64.11 E-value=1.5 Score=31.79 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=31.3
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccC-CCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSK-PESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~-~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.+|.+... .++.+.|.. +...++.+...+
T Consensus 53 ~~aG~l~~GD~I~~ing~~v~~~~~---~~~~~~l~~~~~g~~v~l~v~R 99 (111)
T 2koj_A 53 IQDGRLKAGDRLIEVNGVDLAGKSQ---EEVVSLLRSTKMEGTVSLLVFR 99 (111)
T ss_dssp HHHCSSCTTCEEEEETTEECTTSCH---HHHHHHHHHCCCSSEEEEEEEE
T ss_pred HHCCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCCCCCeEEEEEEe
Confidence 3458 99999999999999876332 246666655 346677665543
No 76
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=64.03 E-value=2.2 Score=29.54 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=29.8
Q ss_pred cceeeeeeEEeeeceeecccccCCCcchhhhcc-CCCCCCeeeeeC
Q psy15590 55 DGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLS-KPESFPVKLTFT 99 (217)
Q Consensus 55 ~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~-~~~n~Pl~l~~~ 99 (217)
-|++.|-.+++|||.++.+... .++.+.+. .+...++.+...
T Consensus 41 aGl~~GD~I~~vng~~v~~~~~---~~~~~~l~~~~~g~~v~l~v~ 83 (88)
T 3bpu_A 41 RGLKEGDLIVEVNKKNVQALTH---NQVVDMLVESPKGSEVTLLVQ 83 (88)
T ss_dssp TTCCTTCEEEEETTEECTTSCH---HHHHHHHHTSCTTCEEEEEEE
T ss_pred hCCCCCCEEEEECCEEcCCCCH---HHHHHHHHhCCCCCEEEEEEE
Confidence 4899999999999999876422 35666665 345667766543
No 77
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.93 E-value=2.5 Score=30.16 Aligned_cols=43 Identities=23% Similarity=0.432 Sum_probs=30.2
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.+|.+..+ .++.+.+.. ..++.|...+
T Consensus 50 ~~aGL~~GD~I~~ing~~v~~~~~---~~~~~~~~~--~~~v~l~v~R 92 (100)
T 2eeh_A 50 ERAGLCVGDKITEVNGLSLESTTM---GSAVKVLTS--SSRLHMMVRR 92 (100)
T ss_dssp HHHTCCSSCEEEEETTEECSSCCH---HHHHHHHHS--CSSEEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCCCCH---HHHHHhhcC--CCEEEEEEEE
Confidence 456899999999999999886432 346666655 4666665433
No 78
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=63.93 E-value=2.6 Score=30.70 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=31.0
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.+|.+... .++.+.+.... .++.|...+
T Consensus 57 ~~aG~L~~GD~I~~vng~~v~~~~~---~~~~~~l~~~~-~~v~l~v~R 101 (116)
T 2dm8_A 57 ARDGRLWAGDQILEVNGVDLRNSSH---EEAITALRQTP-QKVRLVVYR 101 (116)
T ss_dssp HHHTCCCTTCEEEEETTEECSSSCH---HHHHHHHHTCC-SEEEEEEEC
T ss_pred HhCCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCC-CeEEEEEEe
Confidence 4568 99999999999999886432 24666665544 566665544
No 79
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=63.70 E-value=2.7 Score=30.82 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=29.7
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.+|.+.. -.++.+.+.. ...++.|...+
T Consensus 63 ~~aG~L~~GD~Il~Vng~~v~~~~---~~~~~~~l~~-~g~~v~l~v~R 107 (112)
T 2r4h_A 63 ERSGKMRIGDEILEINGETTKNMK---HSRAIELIKN-GGRRVRLFLKR 107 (112)
T ss_dssp HHTTCCCTTCEEEEETTEECTTCC---HHHHHHHHHT-TTTEEEEEEEC
T ss_pred HHcCCCCCCCEEEEECCEECCCCC---HHHHHHHHHc-CCCeEEEEEEe
Confidence 4558 9999999999999998642 2245555554 34566665544
No 80
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=63.67 E-value=2.3 Score=34.15 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=30.3
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFT 99 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~ 99 (217)
++.|++.|-.+++|||.+|.+... .++.+.|.. ..++.|...
T Consensus 124 ~~aGL~~GD~Il~vng~~v~~~~~---~~~~~~l~~--~~~v~l~v~ 165 (192)
T 3k1r_A 124 DSVGLQVGDEIVRINGYSISSCTH---EEVINLIRT--EKTVSIKVR 165 (192)
T ss_dssp HHTTCCTTEEEEEETTEECTTCCH---HHHHHHHTS--SSEEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCCCCH---HHHHHHHcC--CCeEEEEEE
Confidence 466999999999999999987433 356666666 456665443
No 81
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=62.75 E-value=2.7 Score=31.60 Aligned_cols=44 Identities=16% Similarity=0.354 Sum_probs=31.1
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.+|.+... .++.+.|....+ ++.|...+
T Consensus 73 ~~aG~L~~GD~Il~Vng~~v~~~~~---~~~~~~l~~~~~-~v~l~v~r 117 (123)
T 2iwq_A 73 GKNGTLKPGDRIVEVDGMDLRDASH---EQAVEAIRKAGN-PVVFMVQS 117 (123)
T ss_dssp HHHCCCCTTCEEEEETTEECTTCCH---HHHHHHHHHCCS-SEEEEEEC
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHcCCC-eEEEEEEE
Confidence 4568 99999999999999886433 346666655444 77776544
No 82
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=62.50 E-value=1.4 Score=32.05 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=28.4
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeee
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTF 98 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~ 98 (217)
++.|++.|-.+++|||.+|.+.. -.++.+.+... ..++.+..
T Consensus 59 ~~aGl~~GD~I~~vng~~v~~~~---~~~~~~~l~~~-~~~v~l~v 100 (109)
T 1q3o_A 59 WRAGLRMGDFLIEVNGQNVVKVG---HRQVVNMIRQG-GNTLMVKV 100 (109)
T ss_dssp HHTTCCTTCEEEEETTEECTTCC---HHHHHHHHHHT-TTEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCCCC---HHHHHHHHHhC-CCEEEEEE
Confidence 45699999999999999988642 23455555543 33455543
No 83
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=62.44 E-value=1.9 Score=31.01 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=29.0
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCC-CCCeeeee
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPE-SFPVKLTF 98 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~-n~Pl~l~~ 98 (217)
++.| ++.|-.+++|||.+|.+... .++.+.|.... ..++.|..
T Consensus 48 ~~aG~L~~GD~Il~ing~~v~~~~~---~~~~~~l~~~~~g~~v~l~v 92 (103)
T 1uep_A 48 DRDGRLHPGDELVYVDGIPVAGKTH---RYVIDLMHHAARNGQVNLTV 92 (103)
T ss_dssp GGGTCCCTTCEEEEETTEECTTSCH---HHHHHHHHHHHHHTEEEEEE
T ss_pred HhCCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCCCCCcEEEEE
Confidence 5679 99999999999999987432 24555554432 44555543
No 84
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=62.34 E-value=4.3 Score=27.65 Aligned_cols=43 Identities=9% Similarity=0.237 Sum_probs=28.8
Q ss_pred ccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 54 RDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 54 ~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
+-|++.|-.+++|||.++.+.. -.++.+.+.... .++.+...+
T Consensus 40 ~aGl~~GD~I~~vng~~v~~~~---~~~~~~~~~~~~-~~v~l~v~R 82 (85)
T 1rgw_A 40 QSQLSQGDLVVAIDGVNTDTMT---HLEAQNKIKSAS-YNLSLTLQK 82 (85)
T ss_dssp HSSCCCCSBEEEETTEECTTCC---HHHHHHHHTTCS-SCEEEEEES
T ss_pred HcCCCCCCEEEEECCEECCCcC---HHHHHHHHHcCC-CeEEEEEEe
Confidence 5589999999999999987642 124555555433 346665543
No 85
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=61.94 E-value=1.8 Score=32.30 Aligned_cols=45 Identities=24% Similarity=0.289 Sum_probs=30.9
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccC-CCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSK-PESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~-~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.+|.+... .++.+.|.. +...++.|...+
T Consensus 72 ~~aG~L~~GD~Il~Ing~~v~~~~~---~~~~~~l~~~~~g~~v~l~v~R 118 (121)
T 2kom_A 72 IQDGRLKAGDRLIEVNGVDLVGKSQ---EEVVSLLRSTKMEGTVSLLVFR 118 (121)
T ss_dssp HHHTCCCSSSEEEEETTEECTTSCH---HHHHHHHHHCCSSCEEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEEcCCCCH---HHHHHHHhcCCCCCEEEEEEEe
Confidence 3458 99999999999999876322 356666655 345666666543
No 86
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=61.82 E-value=2.8 Score=29.79 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=31.3
Q ss_pred ccccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCCC
Q psy15590 52 GQRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPR 102 (217)
Q Consensus 52 g~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~~ 102 (217)
.++.| ++.|-.+++|||.++.+... .++...+..+. .++.+...+++
T Consensus 44 A~~aG~L~~GD~I~~Ing~~v~~~~~---~~~~~~~~~~~-~~v~l~v~R~~ 91 (96)
T 2qkv_A 44 PEIDSKLQRGDIITKFNGDALEGLPF---QVSYALFKGAN-GKVSMEVTRPK 91 (96)
T ss_dssp HHHHHHCCTTCEEEEETTEECTTCCH---HHHHHHHHTCS-SEEEEEEECCC
T ss_pred HHhcCCCCCCCEEEEECCEECCCCCH---HHHHHHHhcCC-CcEEEEEEeCC
Confidence 35678 99999999999999886332 23444444433 35777666653
No 87
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=61.73 E-value=1.8 Score=31.24 Aligned_cols=44 Identities=30% Similarity=0.423 Sum_probs=29.8
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.+|.+... .++.+.+.. ...++.|...+
T Consensus 58 ~~aG~l~~GD~I~~vng~~v~~~~~---~~~~~~l~~-~g~~v~l~v~R 102 (108)
T 2jre_A 58 ALDGRIEPNDKILRVDDVNVQGMAQ---SDVVEVLRN-AGNPVRLLLIR 102 (108)
T ss_dssp HHHSSCCSSEEEEEETTEECTTSCH---HHHHHHHHH-HCSEEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHc-CCCeEEEEEEe
Confidence 4568 99999999999999986422 245555554 44566665433
No 88
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=61.42 E-value=1.8 Score=32.22 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=31.5
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++-|++.|-.+++|||.+|.+. +=.++.+.|....+.++.|..-+
T Consensus 50 ~~aGL~~GD~Il~InG~~v~~~---~~~d~~~~i~~~~~~~v~l~V~~ 94 (111)
T 1vae_A 50 SLAGAKEGDYIVSIQGVDCKWL---TVSEVMKLLKSFGGEEVEMKVVS 94 (111)
T ss_dssp HHHHCCTTCEEEEETTEECSSC---CHHHHHHHHHHTTTSEECEEEEC
T ss_pred HHcCCCCCCEEEEECCEECCCC---CHHHHHHHHHhCCCceEEEEEEe
Confidence 3458999999999999998853 22356666666556666665433
No 89
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=61.22 E-value=3.1 Score=31.68 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=29.9
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.+|.+... .++.+.|.. ...++.|...+
T Consensus 79 ~~aGL~~GD~Il~Vng~~v~~~~~---~~~~~~l~~-~g~~v~l~v~~ 122 (132)
T 3l4f_D 79 WRAGLRMGDFLIEVNGQNVVKVGH---RQVVNMIRQ-GGNTLMVKVVM 122 (132)
T ss_dssp GGGTCCTTCEEEEESSSBCTTSCH---HHHHHHHHH-TTTEEEEEEEC
T ss_pred HHcCCCCCCEEEEECCEECCCCCH---HHHHHHHHc-CCCEEEEEEEE
Confidence 567999999999999999886433 345555554 33455554433
No 90
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=60.73 E-value=2 Score=32.63 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=30.7
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCC-CCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKP-ESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~-~n~Pl~l~~~~ 100 (217)
++.| +++|-.+++|||.++.+... .++.++|... ...++.|...+
T Consensus 79 ~~aG~L~~GD~Il~ing~~v~~~~~---~~~~~~l~~~~~g~~v~l~v~R 125 (131)
T 1wfg_A 79 DTVGHLRPGDEVLEWNGRLLQGATF---EEVYNIILESKPEPQVELVVSR 125 (131)
T ss_dssp HHTSCCCTTCEEEEETTEECTTCCH---HHHHHHHHHTSSSSEEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhcCCCCEEEEEEEc
Confidence 4668 99999999999999876432 2455666543 44556665443
No 91
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=60.05 E-value=3.6 Score=29.53 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=31.0
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.+... .++.+.+... ..++.|...+
T Consensus 52 ~~aG~L~~GD~I~~vng~~v~~~~~---~~~~~~l~~~-g~~v~l~v~R 96 (105)
T 1wha_A 52 HRAGTLQVGDRVLSINGVDVTEARH---DHAVSLLTAA-SPTIALLLER 96 (105)
T ss_dssp HHHSSCCTTCEEEEESSCBCTTCCH---HHHHHHHTSC-CSCEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHcC-CCeEEEEEEE
Confidence 4568 99999999999999886432 2466666554 5566665544
No 92
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=59.91 E-value=1.9 Score=31.18 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=28.5
Q ss_pred ccc-ceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeC
Q psy15590 53 QRD-GILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFT 99 (217)
Q Consensus 53 ~~~-~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~ 99 (217)
++. |+++|-.+++|||.+|.+...+ ++.+.+....+ .+.|...
T Consensus 49 ~~a~gL~~GD~Il~Ing~~v~~~~~~---~~~~~l~~~~~-~v~l~v~ 92 (103)
T 2dc2_A 49 DRCGGLHVGDAILAVNGVNLRDTKHK---EAVTILSQQRG-EIEFEVV 92 (103)
T ss_dssp HHHTCCCSSEEEEEETTEESTTSCHH---HHHHHHHHCCS-EEEEEEE
T ss_pred HHhCCCCCCCEEEEECCEECCCCCHH---HHHHHHHhCCC-cEEEEEE
Confidence 354 9999999999999998864322 45555544333 4555443
No 93
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=59.67 E-value=1.8 Score=30.34 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=28.6
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeee
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKL 96 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l 96 (217)
++.|++.|-.+++|||.++.+... .++.+.|....+....+
T Consensus 43 ~~aGl~~GD~I~~ing~~v~~~~~---~~~~~~l~~~~~~~~~~ 83 (95)
T 3r68_A 43 EAAGLKNNDLVVAVNGKSVEALDH---DGVVEMIRKGGDQTTLL 83 (95)
T ss_dssp HHHTCCTTEEEEEETTEECTTCCH---HHHHHHHHTTTTEEEEE
T ss_pred HHCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCCCeEEEE
Confidence 456899999999999999876422 35666666654444443
No 94
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=59.43 E-value=3.5 Score=28.17 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=29.8
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.++.+... .++.+.+.... .++.+...+
T Consensus 37 ~~aGl~~GD~I~~ing~~v~~~~~---~~~~~~l~~~~-~~v~l~v~R 80 (83)
T 2kv8_A 37 DFVGLRAGDQILAVNEINVKKASH---EDVVKLIGKCS-GVLHMVIAE 80 (83)
T ss_dssp TTTTCCTTCEEEEETTEECSSCCH---HHHHHHHTTCS-SCEEEEEEC
T ss_pred HHcCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCC-CeEEEEEEc
Confidence 456999999999999999876432 24556665432 446665544
No 95
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=59.03 E-value=2.6 Score=30.21 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=28.4
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++-|++.|-.+++|||.+|.+... .++.+.+...... +.|...|
T Consensus 50 ~~aGL~~GD~I~~vng~~v~~~~~---~~~~~~l~~~~~~-v~l~v~R 93 (100)
T 1whd_A 50 ERAGLQQLDTVLQLNERPVEHWKC---VELAHEIRSCPSE-IILLVWR 93 (100)
T ss_dssp HHHTCCSSCEEEEETTEECTTCCH---HHHHHHHHHCSSE-EEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCCCCH---HHHHHHHHcCCCe-EEEEEEE
Confidence 356899999999999999876322 2455555543332 5554433
No 96
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.48 E-value=4 Score=28.35 Aligned_cols=43 Identities=28% Similarity=0.388 Sum_probs=28.8
Q ss_pred ccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 54 RDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 54 ~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
+.| ++.|-.+++|||.++.+... .++.+.+.... .++.+...+
T Consensus 45 ~aGgl~~GD~I~~vng~~v~~~~~---~~~~~~~~~~~-~~v~l~v~r 88 (93)
T 2dkr_A 45 RHGGLKRGDQLLSVNGVSVEGEQH---EKAVELLKAAQ-GSVKLVVRS 88 (93)
T ss_dssp HHCCCCTTCBEEEETTEECTTSCH---HHHHHHHHHCC-SEEEEEECC
T ss_pred HcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCC-CcEEEEEEe
Confidence 445 99999999999999886422 34555555433 356666544
No 97
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.93 E-value=2.8 Score=29.92 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=30.8
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.| ++.|-.+++|||.+|.+... .++.+.+.. ...++.|...+.
T Consensus 52 ~~aG~l~~GD~I~~vng~~v~~~~~---~~~~~~~~~-~g~~v~l~v~R~ 97 (104)
T 2djt_A 52 QRCGRLEVGDLVLHINGESTQGLTH---AQAVERIRA-GGPQLHLVIRRP 97 (104)
T ss_dssp HHHCSCCTTCBEEEETTEECTTCCH---HHHHHHHHH-TCSEEEEEECCC
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHc-CCCeEEEEEEEC
Confidence 3458 99999999999999886432 245555554 355677766543
No 98
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=57.55 E-value=2.9 Score=29.09 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=30.3
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.| ++.|-.+++|||.++.+... .++...+... ..++.+...++
T Consensus 43 ~~aG~L~~GD~I~~vng~~v~~~~~---~~~~~~~~~~-~~~v~l~v~R~ 88 (92)
T 2qg1_A 43 DADGRLMQGDQILMVNGEDVRNATQ---EAVAALLKCS-LGTVTLEVGRI 88 (92)
T ss_dssp HHHTCCCTTCEEEEETTEECTTCCH---HHHHHHHHHC-CSEEEEEEECC
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHcC-CCeEEEEEEcc
Confidence 4578 99999999999999986432 3455555432 34566665554
No 99
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.51 E-value=3.9 Score=29.25 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=30.4
Q ss_pred ccc-ceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRD-GILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~-~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++. |++.|-.+++|||.++.+. -.++.+.+... ..++.|...|
T Consensus 49 ~~agGL~~GD~I~~ing~~v~~~----~~~~~~~~~~~-~~~v~l~v~R 92 (100)
T 2edp_A 49 ALSQKMRTGDELVNINGTPLYGS----RQEALILIKGS-FRILKLIVRR 92 (100)
T ss_dssp HHHTSCCTTCEEEEETTEECCSC----SHHHHHHHHTC-CSSCEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEEccch----HHHHHHHHHhC-CCeEEEEEEe
Confidence 456 9999999999999999873 23466666554 4666665544
No 100
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=57.44 E-value=2.3 Score=30.15 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=30.3
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.++.+...+ ++.+.+. +...++.|...+
T Consensus 48 ~~aGl~~GD~I~~ing~~v~~~~~~---~~~~~l~-~~g~~v~l~v~r 91 (99)
T 3khf_A 48 QEAGLRAGDLITHINGESVLGLVHM---DVVELLL-KSGNKISLRTTA 91 (99)
T ss_dssp HHHTCCTTCEEEEETTEECTTCCHH---HHHHHHH-HSCSEEEEEEEC
T ss_pred HHcCCCCCCEEEEECCEECCCCCHH---HHHHHHh-cCCCEEEEEEEE
Confidence 3568999999999999998864433 3555555 345566665544
No 101
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=56.99 E-value=3 Score=28.95 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=18.9
Q ss_pred cccceeeeeeEEeeeceeeccc
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNG 74 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~ 74 (217)
++.|++.|-.+++|||.++.+.
T Consensus 46 ~~aGl~~GD~I~~vng~~v~~~ 67 (91)
T 1m5z_A 46 DLGGLKPYDRLLQVNHVRTRDF 67 (91)
T ss_dssp HHHTCCTTCEEEEETTEECTTC
T ss_pred HHcCCCCCCEEEEECCEECCCC
Confidence 4569999999999999998763
No 102
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=56.95 E-value=3.1 Score=29.54 Aligned_cols=42 Identities=24% Similarity=0.395 Sum_probs=28.0
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeee
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTF 98 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~ 98 (217)
++.| ++.|-.+++|||.++.+... .++.+.+... ..++.|..
T Consensus 51 ~~aG~L~~GD~I~~vng~~v~~~~~---~~~~~~~~~~-g~~v~l~v 93 (101)
T 2jik_A 51 ALDGRLQEGDKILSVNGQDLKNLLH---QDAVDLFRNA-GYAVSLRV 93 (101)
T ss_dssp HHHCCCCTTCEEEEETTEECSSCCH---HHHHHHHHTC-CSEEEEEE
T ss_pred HHCCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhC-CCeEEEEE
Confidence 3558 99999999999999886422 2455555443 34555544
No 103
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=56.83 E-value=2.7 Score=37.56 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=24.1
Q ss_pred CceeEEee------ccccceeeeeeEEeeeceeeccc
Q psy15590 44 NKKIVVSF------GQRDGILVGHVLTAVNDAVIKNG 74 (217)
Q Consensus 44 ~~~~~v~~------g~~~~~~~g~~~~~~ng~~~~~~ 74 (217)
++.+.|.- .++-|++.|-.+++|||.++.+.
T Consensus 98 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~ 134 (388)
T 1fc6_A 98 GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGM 134 (388)
T ss_dssp SSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTC
T ss_pred CCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCC
Confidence 45565543 35569999999999999999874
No 104
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=56.40 E-value=2.1 Score=31.95 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=31.3
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCC-CCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPE-SFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~-n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.+... .++.++|.... ..++.|...+
T Consensus 59 ~~aG~L~~GD~I~~ing~~v~~~~~---~~~~~~l~~~~~g~~v~l~v~R 105 (122)
T 1v5q_A 59 ERCGVLQIGDRVMAINGIPTEDSTF---EEANQLLRDSSITSKVTLEIEF 105 (122)
T ss_dssp HHSCCCCTTCCEEEETTEESSSSCH---HHHHHHHHHHTTTTCEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCCCCCeEEEEEEE
Confidence 4558 99999999999999876332 34666665544 5677665544
No 105
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=56.37 E-value=2.3 Score=29.50 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=18.6
Q ss_pred cccceeeeeeEEeeeceeeccc
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNG 74 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~ 74 (217)
++-|++.|-.+++|||.+|.+.
T Consensus 42 ~~aGl~~GD~I~~ing~~v~~~ 63 (90)
T 2eaq_A 42 EFSQLQVDDEIIAINNTKFSYN 63 (90)
T ss_dssp HHTTCCTTCEEEEETTEECCTT
T ss_pred HHcCCCCCCEEEEECCEEccCC
Confidence 4568999999999999998653
No 106
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=56.32 E-value=2.8 Score=33.32 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=31.6
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.| ++.|-.+++|||.+|.+... .++.+.+..+ ..++.|...|+
T Consensus 150 ~~aG~L~~GD~Il~VNg~~v~~~~~---~~~~~~l~~~-~~~v~L~V~R~ 195 (206)
T 3r0h_A 150 EIDSKLQRGDIITKFNGDALEGLPF---QVCYALFKGA-NGKVSMEVTRP 195 (206)
T ss_dssp HHHHHCCTTCEEEEETTEECTTCCH---HHHHHHHHTC-CSEEEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHcC-CCeEEEEEEeC
Confidence 4568 99999999999999986322 3566666554 44677755554
No 107
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=56.32 E-value=3.1 Score=29.07 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=28.6
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.+|.+.. -.++.+.+....+ ++.+...+
T Consensus 38 ~~aGl~~GD~I~~vng~~v~~~~---~~~~~~~l~~~~~-~v~l~v~R 81 (91)
T 2f5y_A 38 ERAGLQQLDTVLQLNERPVEHWK---CVELAHEIRSCPS-EIILLVWR 81 (91)
T ss_dssp HHHTCCTTCEEEEETTEECTTCC---HHHHHHHHHTCSS-EEEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCCCC---HHHHHHHHHcCCC-eEEEEEEe
Confidence 45699999999999999988632 1245555554322 45554433
No 108
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=56.27 E-value=3.5 Score=29.50 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=28.6
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.++.+... .++.+.+... ..++.+...+
T Consensus 43 ~~aGL~~GD~I~~ing~~v~~~~~---~~~~~~~~~~-g~~v~l~v~R 86 (103)
T 1wf7_A 43 SQAHVRIGDVVLSIDGISAQGMTH---LEAQNKIKAC-TGSLNMTLQR 86 (103)
T ss_dssp HHTTCCTTCBEEEETTEECSSCCH---HHHHHHHHHC-SSEEEEEECC
T ss_pred HHcCCCCCCEEEEECCEECCCCCH---HHHHHHHHcC-CCeEEEEEEe
Confidence 567999999999999999876421 2333444332 3456665544
No 109
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=56.21 E-value=3.2 Score=29.12 Aligned_cols=44 Identities=25% Similarity=0.389 Sum_probs=28.7
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.++.+..- .++...+.. ...++.+...|
T Consensus 48 ~~aGl~~GD~I~~ing~~v~~~~~---~~~~~~~~~-~g~~v~l~v~R 91 (97)
T 2w4f_A 48 ARAGVRVGDKLLEVNGVALQGAEH---HEAVEALRG-AGTAVQMRVWR 91 (97)
T ss_dssp HHHTCCTTCEEEEETTEECTTCCH---HHHHHHHHT-SCSEEEEEEEC
T ss_pred HHcCCCCCCEEEEECCEECCCcCH---HHHHHHHhC-CCCeEEEEEEe
Confidence 456899999999999999876321 123333333 45666666544
No 110
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=55.75 E-value=3.3 Score=30.46 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=30.2
Q ss_pred ccc--ceeeeeeEEeeeceeecccccCCCcchhhhccCCC---CCCeeeeeCCC
Q psy15590 53 QRD--GILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPE---SFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~--~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~---n~Pl~l~~~~~ 101 (217)
++. |++.|-.+++|||.+|.+.... ++.+.+.... ..++.|...+.
T Consensus 55 ~~a~gGL~~GD~Il~ing~~v~~~~~~---~~~~~~~~~~~~~~~~v~l~v~R~ 105 (119)
T 2cs5_A 55 DLCVPRLNEGDQVVLINGRDIAEHTHD---QVVLFIKASCERHSGELMLLVRPN 105 (119)
T ss_dssp TSSSSCCCTTCEEEEETTBCTTSSCHH---HHHHHHHHHHHCCSSCEEEEEECC
T ss_pred HHhhcCCCCCCEEEEECCEECCCCCHH---HHHHHHHhccccCCCEEEEEEEcc
Confidence 455 9999999999999999874322 3444444332 24666655443
No 111
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=55.57 E-value=2.2 Score=29.65 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.1
Q ss_pred cccc-eeeeeeEEeeeceeeccc
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNG 74 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~ 74 (217)
++.| ++.|-.+++|||.++.+.
T Consensus 41 ~~aG~L~~GD~I~~ing~~v~~~ 63 (90)
T 2q9v_A 41 DTDGRLRSGDELISVDGTPVIGK 63 (90)
T ss_dssp HHHCCCCTTCEEEEETTEECTTS
T ss_pred HHCCCCCCCCEEEEECCEECCCC
Confidence 4568 999999999999998763
No 112
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.45 E-value=3.2 Score=29.55 Aligned_cols=43 Identities=12% Similarity=0.215 Sum_probs=29.1
Q ss_pred cceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 55 DGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 55 ~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
-|++.|-.+++|||.+|.+... .++.+.+.. ...++.|...+.
T Consensus 46 agL~~GD~Il~ing~~v~~~~~---~~~~~~~~~-~g~~v~l~v~R~ 88 (96)
T 2edv_A 46 GKLFPGDQILQMNNEPAEDLSW---ERAVDILRE-AEDSLSITVVRC 88 (96)
T ss_dssp TTSCTTCBEEEESSCBSTTCCH---HHHHHHHHH-CSSCEEEEEEEC
T ss_pred hCCCCCCEEEEECCEECCCCCH---HHHHHHHHc-CCCeEEEEEEEC
Confidence 5899999999999999886422 245555544 345666655443
No 113
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=55.45 E-value=4.2 Score=30.95 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=29.4
Q ss_pred ccccceeeeeeEEeeeceeecccccCCCcchhhhccC-CCCCCeeeeeC
Q psy15590 52 GQRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSK-PESFPVKLTFT 99 (217)
Q Consensus 52 g~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~-~~n~Pl~l~~~ 99 (217)
+++-|++.|-.+++|||.+|.+... .++.+.|.. +...++.|...
T Consensus 45 ~~~aGL~~GD~Il~VNG~~v~~~~h---~evv~~lk~~~~G~~v~L~V~ 90 (113)
T 3soe_A 45 QWCQGLQKGDIIKEIYHQNVQNLTH---LQVVEVLKQFPVGADVPLLIL 90 (113)
T ss_dssp GGSTTCCTTCEEEEETTEECTTSCH---HHHHHHHHHSCTTCEEEEEEE
T ss_pred HHhCCCCCCCEEEEECCEECCCCCH---HHHHHHHHcCCCCCEEEEEEE
Confidence 3566999999999999999987432 234455543 33445555443
No 114
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=55.22 E-value=4 Score=28.29 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=26.2
Q ss_pred ccc-ceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeee
Q psy15590 53 QRD-GILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLT 97 (217)
Q Consensus 53 ~~~-~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~ 97 (217)
++. |++.|-.+++|||.++.+... .++.+.+... ..++.+.
T Consensus 44 ~~aggl~~GD~I~~ing~~v~~~~~---~~~~~~~~~~-~~~v~l~ 85 (90)
T 1qav_A 44 DQTEALFVGDAILSVNGEDLSSATH---DEAVQALKKT-GKEVVLE 85 (90)
T ss_dssp HHTTCCCTTEEEEEETTEECTTCCH---HHHHHHHHTC-CSEEEEE
T ss_pred HhcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhC-CCeEEEE
Confidence 344 899999999999999886422 2344444433 2344443
No 115
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=54.93 E-value=1.9 Score=31.45 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=30.6
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccC----CCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSK----PESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~----~~n~Pl~l~~~~ 100 (217)
++.| +++|-.+++|||.++.+...+| +.+.|.. .+..|+.+..-+
T Consensus 46 ~~aG~L~~GD~Il~Vng~~v~~~~~~~---~~~~l~~~~~~~~~~~i~l~v~r 95 (103)
T 1ufx_A 46 HNCGQLKVGHVILEVNGLTLRGKEHRE---AARIIAEAFKTKDRDYIDFLVTE 95 (103)
T ss_dssp HHHCSSCTTCBCCEETTEECTTCBHHH---HHHHHHHHHHCSSCSEEEEEECC
T ss_pred HHCCCCCCCCEEEEECCEECCCCCHHH---HHHHHHHhcccCCCCeEEEEEEE
Confidence 5668 9999999999999998755443 3344433 255666665443
No 116
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=54.67 E-value=3.3 Score=33.00 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=32.4
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.+... .++.++|.. ...++.|...+
T Consensus 149 ~~aG~l~~GD~I~~ing~~v~~~~~---~~~~~~l~~-~~~~v~l~v~R 193 (200)
T 2qt5_A 149 DREGTIKPGDRLLSVDGIRLLGTTH---AEAMSILKQ-CGQEATLLIEY 193 (200)
T ss_dssp HHHCCCCTTCEEEEETTEECTTCCH---HHHHHHHHT-TCSEEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHc-CCCeEEEEEEE
Confidence 4568 99999999999999886433 356667766 66777776543
No 117
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=54.13 E-value=4.6 Score=28.29 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=26.9
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFT 99 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~ 99 (217)
++ |++.|-.+++|||.++.+... .++...+. +...++.|...
T Consensus 49 ~~-gL~~GD~I~~vng~~v~~~~~---~~~~~~~~-~~~~~v~l~v~ 90 (95)
T 1mfg_A 49 SK-LLQPGDKIIQANGYSFINIEH---GQAVSLLK-TFQNTVELIIV 90 (95)
T ss_dssp TT-TCCTTCEEEEETTEECTTCBH---HHHHHHHH-HCCSEEEEEEE
T ss_pred hh-CCCCCCEEEEECCEEcCCCCH---HHHHHHhh-cCCCeEEEEEE
Confidence 45 999999999999999876332 13333333 23455555543
No 118
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.06 E-value=3.4 Score=30.92 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=30.4
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.|++.|-.+++|||.+|..-.. .++.+++..+ ++.|...+.
T Consensus 58 ~~aGL~~GD~Il~Ing~~v~~~~~---~~~~~~l~~~---~v~l~v~R~ 100 (114)
T 2d8i_A 58 SKKGLKAGDEILEINNRAADALNS---SMLKDFLSQP---SLGLLVRTY 100 (114)
T ss_dssp HHHTCCTTCCEEEESSCBGGGCCH---HHHHHHHTSS---EEEEEEEEC
T ss_pred HHcCCCCCCEEEEECCEECCCcCH---HHHHHHHhCC---cEEEEEEEC
Confidence 466999999999999999885322 3566666643 666655443
No 119
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=54.05 E-value=2.5 Score=30.32 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=31.8
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.++.+.... ++.+.+. +...++.+...+
T Consensus 40 ~~aGl~~GD~I~~ing~~v~~~~~~---~~~~~l~-~~g~~v~l~v~r 83 (106)
T 3ngh_A 40 EKAGLLDGDRVLRINGVFVDKEEHA---QVVELVR-KSGNSVTLLVLD 83 (106)
T ss_dssp HHTTCCTTCEEEEETTEECTTSCHH---HHHHHHH-HTTTEEEEEEEC
T ss_pred HHcCCCCCCEEEEECCEECCCCCHH---HHHHHHH-hCCCEEEEEEEE
Confidence 4568999999999999998764322 4666665 345678777654
No 120
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=53.93 E-value=3.6 Score=29.60 Aligned_cols=45 Identities=24% Similarity=0.336 Sum_probs=30.6
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.| ++.|-.+++|||.++.+... .++...+... ..++.|...+.
T Consensus 56 ~~aG~L~~GD~I~~vng~~v~~~~~---~~~~~~~~~~-g~~v~l~v~R~ 101 (108)
T 1q7x_A 56 ESDGRIHKGDRVLAVNGVSLEGATH---KQAVETLRNT-GQVVHLLLEKG 101 (108)
T ss_dssp HHHTCCCSSCEEEEETTEECBSCTT---SHHHHHHHHT-TSEEEEEEECC
T ss_pred HHCCCCCCCCEEEEECCEECCCCCH---HHHHHHHHcC-CCeEEEEEEeC
Confidence 5578 99999999999999987433 3444455443 46666655443
No 121
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=53.77 E-value=2.4 Score=31.01 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=30.5
Q ss_pred cccc-eeeeeeEEeeeceeec-ccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIK-NGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~-~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.| ++.|-.+++|||.++. |...+ ++.+.+.. ...++.|...+.
T Consensus 63 ~~aG~l~~GD~Il~ing~~v~~~~~~~---~~~~~l~~-~~~~v~l~v~R~ 109 (117)
T 2o2t_A 63 HRDGRLKETDQILAINGQALDQTITHQ---QAISILQK-AKDTVQLVIARG 109 (117)
T ss_dssp HHHCCCCTTCEEEEETTEECCTTSCHH---HHHHHHHH-CCSEEEEEEESS
T ss_pred HHCCCCCCCCEEEEECCEECCCCCCHH---HHHHHHHc-CCCEEEEEEEeC
Confidence 4568 9999999999999986 64433 34455543 345666665443
No 122
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=53.73 E-value=2.4 Score=31.91 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=29.3
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| +++|-.+++|||.+|.|...++ +.+.|.... .++.|...+
T Consensus 79 ~~aG~L~~GD~Il~vng~~v~~~~~~~---~~~~l~~~~-~~v~l~v~r 123 (128)
T 1nf3_C 79 QSTGLLAVNDEVLEVNGIEVSGKSLDQ---VTDMMIANS-RNLIITVRP 123 (128)
T ss_dssp HHHTCCCTTCEEEEETTEESTTCCHHH---HHHHHHHTT-TSEEEEEEC
T ss_pred HHCCCCCCCCEEEEECCEECCCCCHHH---HHHHHHcCC-CeEEEEEEE
Confidence 4568 9999999999999998765443 444554222 346665443
No 123
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=53.63 E-value=3.1 Score=30.20 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=31.0
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.+... .++.+.+.. ...++.|...+
T Consensus 58 ~~aG~L~~GD~Il~vng~~v~~~~~---~~~~~~l~~-~g~~v~l~v~r 102 (111)
T 1uju_A 58 GRDGRLRVGLRLLEVNQQSLLGLTH---GEAVQLLRS-VGDTLTVLVCD 102 (111)
T ss_dssp HHHSSCCTTCBCCBBSSCBCTTSCH---HHHHHHHSS-CSSEEEECCCC
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHc-CCCeEEEEEEE
Confidence 4568 99999999999999886432 245666655 34666665544
No 124
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=52.94 E-value=4.9 Score=29.00 Aligned_cols=45 Identities=11% Similarity=0.257 Sum_probs=31.8
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.| ++.|-.+++|||.++.+... .++...+... ..++.|...+.
T Consensus 50 ~~aG~L~~GD~I~~vng~~v~~~~~---~~~~~~~~~~-~~~v~l~v~R~ 95 (110)
T 1um1_A 50 AADGRLSLGDRILEVNGSSLLGLGY---LRAVDLIRHG-GKKMRFLVAKS 95 (110)
T ss_dssp HHHSCCCTTCEEEEESSCBCSSCCH---HHHHHHHHTC-CSEEEEEEECC
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHcC-CCeEEEEEEeC
Confidence 4568 99999999999999886332 2455555543 66777776554
No 125
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=52.84 E-value=3.7 Score=30.89 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=31.7
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccC-CCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSK-PESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~-~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.+|.+... .++.+.|.. +...++.|...+
T Consensus 65 ~~aGL~~GD~Il~Vng~~v~~~~~---~~~~~~l~~~~~g~~v~l~v~R 110 (124)
T 3tsv_A 65 AKEGLEEGDQILRVNNVDFTNIIR---EEAVLFLLDLPKGEEVTILAQK 110 (124)
T ss_dssp HHTTCCTTEEEEEETTEECSSCCH---HHHHHHHHHSCTTCEEEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCCCCH---HHHHHHHHhcCCCCEEEEEEEE
Confidence 456999999999999999875422 345555543 566777776644
No 126
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=52.77 E-value=5 Score=28.55 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=30.6
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.++.+... .++.+.+... ..++.|...+
T Consensus 44 ~~aGl~~GD~I~~ing~~v~~~~~---~~~~~~l~~~-g~~v~l~v~r 87 (102)
T 2d90_A 44 EAAGLKNNDLVVAVNGKSVEALDH---DGVVEMIRKG-GDQTTLLVLD 87 (102)
T ss_dssp TTTTCCTTCEEEEESSCBCTTSCH---HHHHHHHHHS-TTEEEEEECS
T ss_pred HHcCCCCCCEEEEECCEECCCCCH---HHHHHHHHcC-CCEEEEEEEE
Confidence 456899999999999999876422 2455555542 4567776644
No 127
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=52.75 E-value=2.5 Score=31.76 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=30.5
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.|...+ ++.+.|... ..++.|...+
T Consensus 67 ~~aG~L~~GD~Il~VNg~~v~~~~~~---~~~~~l~~~-~~~v~L~v~R 111 (118)
T 3b76_A 67 SRDGRIKTGDILLNVDGVELTEVSRS---EAVALLKRT-SSSIVLKALE 111 (118)
T ss_dssp HHHCSSCTTCEEEEETTEEGGGSCHH---HHHHHHHSC-CSEEEEEEEE
T ss_pred HHCCCCCCCCEEEEECCEECCCCCHH---HHHHHHHcC-CCeEEEEEEE
Confidence 4679 999999999999999875443 455555543 3446665443
No 128
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=52.50 E-value=4 Score=28.63 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=27.1
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeee
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTF 98 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~ 98 (217)
++.| ++.|-.+++|||.++.+... .++...+.. ...++.+..
T Consensus 43 ~~aG~L~~GD~I~~vng~~v~~~~~---~~~~~~~~~-~g~~v~l~v 85 (95)
T 2vwr_A 43 AQDGRLSSNDRVLAINGHDLKYGTP---ELAAQIIQA-SGERVNLTI 85 (95)
T ss_dssp HHHCCCCTTCEEEEETTEECTTCCH---HHHHHHHHH-CCSEEEEEE
T ss_pred HHCCCCCCCCEEEEECCEECCCCCH---HHHHHHHHc-CCCEEEEEE
Confidence 4578 99999999999999876322 233333432 245555544
No 129
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=52.47 E-value=4.4 Score=28.56 Aligned_cols=42 Identities=14% Similarity=0.321 Sum_probs=28.5
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeee
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTF 98 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~ 98 (217)
++.|++.|-.+++|||.++.+... .++.+.|....+ ++.|..
T Consensus 51 ~~aGL~~GD~I~~ing~~v~~~~~---~~~~~~l~~~~~-~v~l~v 92 (96)
T 2ego_A 51 QLAGLTPGDTIASVNGLNVEGIRH---REIVDIIKASGN-VLRLET 92 (96)
T ss_dssp HHTTCCTTCEEEEETTEECTTCCH---HHHHHHHHHTTT-EEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCCC-eEEEEE
Confidence 456899999999999999875322 245555554433 666654
No 130
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.33 E-value=3 Score=29.85 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.5
Q ss_pred cccceeeeeeEEeeeceeecc
Q psy15590 53 QRDGILVGHVLTAVNDAVIKN 73 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~ 73 (217)
++.|++.|-.+++|||.++.+
T Consensus 46 ~~aGl~~GD~I~~vng~~v~~ 66 (106)
T 2eei_A 46 MRAGVLADDHLIEVNGENVED 66 (106)
T ss_dssp HHHTCCSSEEEEEETTEECTT
T ss_pred HHcCCCCCCEEEEECCEECCC
Confidence 456999999999999999875
No 131
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=52.00 E-value=2.7 Score=31.24 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=29.8
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeee
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTF 98 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~ 98 (217)
++.| ++.|-.+++|||.+|.+... .++.+.|... ..++.|..
T Consensus 68 ~~aG~L~~GD~Il~Vng~~v~~~~~---~~~~~~l~~~-g~~v~l~v 110 (117)
T 2byg_A 68 QKDGRLQVGDRLLMVNNYSLEEVTH---EEAVAILKNT-SEVVYLKV 110 (117)
T ss_dssp HHHCCCCTTCEEEEETTEECTTCCH---HHHHHHHHTC-CSEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHcC-CCeEEEEE
Confidence 5679 99999999999999987443 3455666543 45566554
No 132
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=51.70 E-value=5.4 Score=29.68 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=30.2
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++-|++.|-.+++|||.++.+.. + .++.+.+... .++.|...+
T Consensus 60 ~~aGL~~GD~I~~vng~~v~~~~--~-~~~~~~~~~~--~~v~l~v~R 102 (128)
T 1uf1_A 60 EGSGLKVGDQILEVNGRSFLNIL--H-DEAVRLLKSS--RHLILTVKD 102 (128)
T ss_dssp HHHTCCTTCEEEEETTEECSSCC--H-HHHHHHHTTC--SEEEEEEEC
T ss_pred HHCCCCCCCEEEEECCEECCCCC--H-HHHHHHHhcC--CeEEEEEEE
Confidence 45689999999999999987632 2 4566666554 366665444
No 133
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=51.68 E-value=3.8 Score=29.74 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=28.5
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.+.... ++...+... ..++.+...+
T Consensus 49 ~~aG~l~~GD~I~~vng~~v~~~~~~---~~~~~~~~~-g~~v~l~v~R 93 (113)
T 2g5m_B 49 HRDGRIQVNDLLVEVDGTSLVGVTQS---FAASVLRNT-KGRVRFMIGR 93 (113)
T ss_dssp HHHTCSCTTCBEEEETTEECSSCCHH---HHHHHHHHS-CSSCEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCHH---HHHHHHhcC-CCeEEEEEEe
Confidence 4679 999999999999999864322 233334332 4555554443
No 134
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=51.18 E-value=4.9 Score=31.98 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=32.3
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.+.. =.++.++|... ..++.|...+
T Consensus 149 ~~aG~l~~GD~I~~vng~~v~~~~---~~~~~~~l~~~-~~~v~l~v~R 193 (196)
T 1p1d_A 149 HRTGTLELGDKLLAIDNIRLDSCS---MEDAVQILQQC-EDLVKLKIRK 193 (196)
T ss_dssp HHTSCCCTTCEEEEETTEEGGGCC---HHHHHHHHHHC-TTCEEEEEEC
T ss_pred HhcCCCCCCCEEEEECCEECCCCC---HHHHHHHHHhC-CCEEEEEEEe
Confidence 4678 9999999999999988632 23566666655 6777776654
No 135
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=50.99 E-value=3.4 Score=29.62 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=31.0
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.|++.|-.+++|||.++.+...+ ++.+.|.. ...++.|...+.
T Consensus 57 ~~aGl~~GD~I~~ing~~v~~~~~~---~~~~~l~~-~g~~v~l~v~r~ 101 (107)
T 3qe1_A 57 DRAGVRKGDRILEVNGVNVEGATHK---QVVDLIRA-GEKELILTVLSV 101 (107)
T ss_dssp HHHTCCTTCEEEEETTEECTTCCHH---HHHHHHHH-CSSEEEEEEECS
T ss_pred HHcCCCCCCEEEEECCEECCCCCHH---HHHHHHHc-CCCEEEEEEEcC
Confidence 4569999999999999998864333 45555553 355666665544
No 136
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=50.46 E-value=4.1 Score=29.22 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=28.4
Q ss_pred cccc--eeeeeeEEeeeceeecccccCCCcchhhhccCCCC---CCeeeee
Q psy15590 53 QRDG--ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPES---FPVKLTF 98 (217)
Q Consensus 53 ~~~~--~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n---~Pl~l~~ 98 (217)
++.| ++.|-.+++|||.+|.+... .++.+.|....+ .++.|..
T Consensus 57 ~~aG~rL~~GD~Il~ing~~v~~~~~---~~~~~~i~~~~~~~~~~v~l~v 104 (107)
T 3nfk_A 57 DLCVPRLNEGDQVVLINGRDIAEHTH---DQVVLFIKASCERHSGELMLLV 104 (107)
T ss_dssp HHSSSCCCTTCEEEEETTEECTTCCH---HHHHHHHHCGGGSBTTBEEEEE
T ss_pred HHcCCccCCCCEEEEECCEECCCCCH---HHHHHHHHhccccCCcEEEEEE
Confidence 3568 99999999999999886432 245555544432 4555543
No 137
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=49.81 E-value=7.4 Score=27.55 Aligned_cols=42 Identities=19% Similarity=0.333 Sum_probs=28.4
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFT 99 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~ 99 (217)
++.|++.|-.+++|||.+|.+.. + .++.+.+... .++.|...
T Consensus 49 ~~aGL~~GD~I~~ing~~v~~~~--~-~~~~~~~~~~--~~v~l~v~ 90 (101)
T 1uez_A 49 EKEGLRVGDQILRVNDKSLARVT--H-AEAVKALKGS--KKLVLSVY 90 (101)
T ss_dssp HHHTCCSSCCEEEETTEECSSCC--H-HHHHHHSSSS--SSCCEEEC
T ss_pred HHcCCCCCCEEEEECCEECCCcC--H-HHHHHhhcCC--CeEEEEEE
Confidence 45589999999999999997632 2 3455555443 35555443
No 138
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=49.65 E-value=4.6 Score=29.13 Aligned_cols=44 Identities=25% Similarity=0.389 Sum_probs=28.5
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.+|.+... .++...+.. ...++.|...|
T Consensus 60 ~~aGL~~GD~I~~ing~~v~~~~~---~~~~~~~~~-~g~~v~l~v~R 103 (110)
T 1x5q_A 60 ARAGVRVGDKLLEVNGVALQGAEH---HEAVEALRG-AGTAVQMRVWR 103 (110)
T ss_dssp HHHTCCTTCEEEEETTEECTTCCH---HHHHHHHHS-CCSEEEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCCcCH---HHHHHHhhC-CCCeEEEEEEE
Confidence 456899999999999999876322 123333333 45666665543
No 139
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=54.86 E-value=3.5 Score=30.52 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=20.9
Q ss_pred cc-cceeeeeeEEeeeceeecccccCC
Q psy15590 53 QR-DGILVGHVLTAVNDAVIKNGQLDD 78 (217)
Q Consensus 53 ~~-~~~~~g~~~~~~ng~~~~~~~~~d 78 (217)
++ -|++.|-.+++|||.+|.+...++
T Consensus 67 ~~~aGL~~GD~Il~ING~~v~~~~~~~ 93 (112)
T 2lob_A 67 DRCGGLHVGDAILAVNGVNLRDTKHKE 93 (112)
Confidence 45 589999999999999998754443
No 140
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=49.27 E-value=5.5 Score=28.52 Aligned_cols=40 Identities=13% Similarity=0.400 Sum_probs=29.7
Q ss_pred ceeeeeeEEeeeceeecccccCCCcchhhhccC-CCCCCeeeeeCC
Q psy15590 56 GILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSK-PESFPVKLTFTR 100 (217)
Q Consensus 56 ~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~-~~n~Pl~l~~~~ 100 (217)
|++.|=.+++|||.+|.. -.++.++|.. +...++.+...|
T Consensus 23 GL~~GD~I~~Ing~~v~~-----~~dl~~~l~~~~~g~~v~l~v~R 63 (100)
T 3i18_A 23 VLHAGDLITEIDGNAFKS-----SQEFIDYIHSKKVGDTVKINYKH 63 (100)
T ss_dssp TCCTTCEEEEETTBCCSS-----HHHHHHHHHTSCTTCEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCC-----HHHHHHHHHhCCCCCEEEEEEEE
Confidence 899999999999999763 3466666765 356777776654
No 141
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=48.97 E-value=4.8 Score=30.04 Aligned_cols=44 Identities=7% Similarity=0.212 Sum_probs=28.1
Q ss_pred ccc-ceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRD-GILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~-~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++. |+++|-.+++|||.++.+.... ++.+.|....+ .+.|..-+
T Consensus 67 ~~aggL~~GD~Il~VnG~~v~~~~~~---~~~~~l~~~~~-~v~l~v~r 111 (120)
T 2iwo_A 67 AQTQKLRVGDRIVTICGTSTEGMTHT---QAVNLLKNASG-SIEMQVVA 111 (120)
T ss_dssp HHHTCCCTTCEEEEETTEECTTCBHH---HHHHHHHHCCS-EEEEEEEC
T ss_pred HHhCCCCCCCEEEEECCEECCCCCHH---HHHHHHHcCCC-eEEEEEEE
Confidence 456 9999999999999999874322 34444443322 25554433
No 142
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=48.89 E-value=6 Score=28.69 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=30.1
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|..+++|||.+|.+... .++.+.+... .++.+...+
T Consensus 55 ~~aGL~~GD~Il~vng~~v~~~~~---~~~~~~~~~~--~~v~l~v~r 97 (114)
T 1x5n_A 55 AEVGLEIGDQIVEVNGVDFSNLDH---KEAVNVLKSS--RSLTISIVA 97 (114)
T ss_dssp TTTTCCTTCEEEEETTEETTSCCT---THHHHHHHHC--SSEEEEECS
T ss_pred HHcCCCCCCEEEEECCEECCCCCH---HHHHHHHhcC--CeEEEEEEc
Confidence 456899999999999999986532 3455555443 367776644
No 143
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=48.51 E-value=5 Score=28.45 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=28.9
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFT 99 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~ 99 (217)
++.| ++.|-.+++|||.++.+... .++.+.+.. ...++.|...
T Consensus 48 ~~aG~L~~GD~I~~vng~~v~~~~~---~~~~~~~~~-~g~~v~l~v~ 91 (102)
T 2i1n_A 48 AMDGRLGVNDCVLRVNEVDVSEVVH---SRAVEALKE-AGPVVRLVVR 91 (102)
T ss_dssp HHHCCCCTTCEEEEETTEECSSCCH---HHHHHHHHH-SCSEEEEEEE
T ss_pred HHCCCCCCCCEEEEECCEECCCCCH---HHHHHHHHc-CCCeEEEEEE
Confidence 4568 99999999999999876332 244455544 3456666443
No 144
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=47.91 E-value=5 Score=29.31 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=29.7
Q ss_pred ccccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 52 GQRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 52 g~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
.++.| ++.|-.+++|||.+|.+... .++...+..+. .++.+...++
T Consensus 38 A~~aG~L~~GD~Il~Ing~~v~~~~~---~~~~~~~~~~~-~~v~l~v~R~ 84 (106)
T 2la8_A 38 PEIDSKLQRGDIITKFNGDALEGLPF---QVCYALFKGAN-GKVSMEVTRP 84 (106)
T ss_dssp HHHHTTCCTTCEEEEESSCBCSSSCH---HHHHHHHHSCB-SCEEEEEEEC
T ss_pred HHHCCCCCCCCEEEEECCEECCCCCH---HHHHHHHhCCC-CeEEEEEEeC
Confidence 35679 99999999999999986332 23334443332 3566655444
No 145
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=47.88 E-value=3.4 Score=30.28 Aligned_cols=68 Identities=16% Similarity=0.337 Sum_probs=40.6
Q ss_pred ceecccCccccccccCceeEEee------ccccce-eeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 29 AVTFQFPLNIKLTPENKKIVVSF------GQRDGI-LVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 29 ~~t~~~p~~~~l~~~~~~~~v~~------g~~~~~-~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
+|....++.+.+...+..+.|.- .++.|+ +.|-.+++|||.+|.+...+ ++.+.|.... .++.|...+
T Consensus 32 ~k~~~~~lG~~i~~~~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~---~~~~~l~~~~-~~v~l~v~r 106 (113)
T 1va8_A 32 EKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVN---EVFDLLSDMH-GTLTFVLIP 106 (113)
T ss_dssp EECTTCCCCEEEEECSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHH---HHHHHHHHCC-EEEEEEEEC
T ss_pred EeCCCCceeEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHH---HHHHHHHcCC-CeEEEEEEE
Confidence 34433356666655444454432 245599 99999999999999864433 4555554333 255555443
No 146
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=47.77 E-value=5.1 Score=28.31 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=28.5
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.+... .++.+.+. +...++.|...+
T Consensus 50 ~~aG~l~~GD~I~~vng~~v~~~~~---~~~~~~~~-~~g~~v~l~v~R 94 (103)
T 1wfv_A 50 IRNGRMRVGDQIIEINGESTRDMTH---ARAIELIK-SGGRRVRLLLKR 94 (103)
T ss_dssp HHHCSSCTTCEEEEETTEECSSCCH---HHHHHHHH-HHCSEECEEEEC
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHH-cCCCeEEEEEEE
Confidence 3458 99999999999999886432 23444554 334455554433
No 147
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=47.24 E-value=3.6 Score=30.49 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=27.5
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeee
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLT 97 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~ 97 (217)
++.| ++.|-.+++|||.++.|...+ ++.+.|....+ ++.|.
T Consensus 64 ~~aG~L~~GD~I~~Ing~~v~~~~~~---~~~~~l~~~~~-~v~l~ 105 (114)
T 2gzv_A 64 ALDGTVAAGDEITGVNGRSIKGKTKV---EVAKMIQEVKG-EVTIH 105 (114)
T ss_dssp HHHCCCCTTCEEEEETTEECTTCCHH---HHHHHHHHCCS-EEEEE
T ss_pred HHCCCCCCCCEEEEECCEECCCCCHH---HHHHHHHcCCC-eEEEE
Confidence 4568 999999999999998764433 45555554333 34444
No 148
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=47.11 E-value=3.6 Score=33.00 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=27.9
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeee
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLT 97 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~ 97 (217)
++.| +++|-.+++|||.+|.|.... ++.+.|.. ...++.|.
T Consensus 125 ~~aG~L~~GD~Il~VNG~~v~~~~~~---~~~~~l~~-~g~~v~L~ 166 (170)
T 3egg_C 125 HRDGRIQVNDLLVEVDGTSLVGVTQS---FAASVLRN-TKGRVRFM 166 (170)
T ss_dssp HHHCCCCTTCEEEEETTEECTTBCHH---HHHHHHHH-CCSEEEEE
T ss_pred HHCCCCCCCCEEEEECCEECCCCCHH---HHHHHHHc-CCCEEEEE
Confidence 4568 999999999999999875443 34455544 22355544
No 149
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=47.10 E-value=3.6 Score=31.03 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=30.9
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccC--CCCCCeeeee
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSK--PESFPVKLTF 98 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~--~~n~Pl~l~~ 98 (217)
++-|++.|-.+++|||.+|.... =.++.+.+.. ++..|+.|..
T Consensus 53 ~~AGL~~GD~I~~Ing~~v~~~s---~~dv~~~i~~~~~~g~~v~LLV 97 (101)
T 3qik_A 53 EVAGLQVGRKIYSINEDLVFLRP---FSEVESILNQSFCSRRPLRLLV 97 (101)
T ss_dssp HHHTCCTTCBEEEETTEESTTSC---HHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHcCCCCCCEEEEECCEEcCcCC---HHHHHHHHHHhhccCCeEEEEE
Confidence 44599999999999999985332 3356667766 4677777654
No 150
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=47.06 E-value=3.6 Score=29.53 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=30.6
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.| ++.|-.+++|||.++.+.... ++.+.+.. ...++.+...+.
T Consensus 52 ~~aG~L~~GD~I~~ing~~v~~~~~~---~~~~~~~~-~g~~v~l~v~R~ 97 (106)
T 3axa_A 52 DVDGRLAAGDQLLSVDGRSLVGLSQE---RAAELMTR-TSSVVTLEVAKQ 97 (106)
T ss_dssp HHHCCCCTTCEEEEETTEECTTCCHH---HHHHHHHT-CCSEEEEEEECC
T ss_pred HHcCCCCCCCEEEEECCEECCCCCHH---HHHHHHHc-CCCeEEEEEEeC
Confidence 4668 999999999999998864322 34455544 456666665443
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=46.78 E-value=15 Score=36.02 Aligned_cols=60 Identities=12% Similarity=0.245 Sum_probs=40.5
Q ss_pred CccccccccCceeEEee--------------ccccc--eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeee
Q psy15590 35 PLNIKLTPENKKIVVSF--------------GQRDG--ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTF 98 (217)
Q Consensus 35 p~~~~l~~~~~~~~v~~--------------g~~~~--~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~ 98 (217)
-+.+.+...++.+.|.. .++-| ++ |=.+++|||.++.+.. ++.+.|.++...++.|..
T Consensus 738 g~G~~~~~~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~-----~~~~~~~~~~g~~v~l~v 811 (1045)
T 1k32_A 738 RIACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS-----NIYRVLSEKAGTSARIRL 811 (1045)
T ss_dssp BCSEEEEEETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB-----CHHHHHHTTTTSEEEEEE
T ss_pred eecEEEEEeCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh-----hHHHhhcCCCCCEEEEEE
Confidence 34455566677776653 24568 99 9999999999988642 556666666666665554
Q ss_pred CC
Q psy15590 99 TR 100 (217)
Q Consensus 99 ~~ 100 (217)
.+
T Consensus 812 ~r 813 (1045)
T 1k32_A 812 SG 813 (1045)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 152
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=46.70 E-value=2.4 Score=30.47 Aligned_cols=40 Identities=15% Similarity=0.332 Sum_probs=27.3
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeee
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKL 96 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l 96 (217)
++.|++.|-.+++|||.+|.+... .++.+.|....+ ++.|
T Consensus 62 ~~aGl~~GD~I~~vng~~v~~~~~---~~~~~~l~~~~~-~v~l 101 (104)
T 2z17_A 62 HCAGLQAGDVLANINGVSTEGFTY---KQVVDLIRSSGN-LLTI 101 (104)
T ss_dssp HHHTCCTTCBCCEETTEECTTCCH---HHHHHHHHHTTT-EEEE
T ss_pred HHcCCCCCCEEEEECCEEcCCCCH---HHHHHHHHhCCC-cEEE
Confidence 355899999999999999886433 245555555433 5544
No 153
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=46.65 E-value=3.7 Score=30.55 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=29.6
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.+|.+... .++.+.+....+ ++.|...+
T Consensus 67 ~~aG~L~~GD~Il~Vng~~v~~~~~---~~~~~~l~~~~~-~v~l~v~R 111 (117)
T 2fne_A 67 SEDGRLKRGDQIIAVNGQSLEGVTH---EEAVAILKRTKG-TVTLMVLS 111 (117)
T ss_dssp HHHCCCCTTCEEEEETTEECTTCCH---HHHHHHHHHCCS-SEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHcCCC-eEEEEEEe
Confidence 4568 99999999999999987533 245555554333 46665433
No 154
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=46.60 E-value=3.7 Score=30.88 Aligned_cols=43 Identities=23% Similarity=0.388 Sum_probs=29.1
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCC-CCCeeeee
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPE-SFPVKLTF 98 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~-n~Pl~l~~ 98 (217)
++.| ++.|-.+++|||.+|.+... .++.+.|.... ..++.|..
T Consensus 57 ~~aG~L~~GD~Il~vng~~v~~~~~---~~~~~~l~~~~~g~~v~l~v 101 (129)
T 2kpk_A 57 ALDGKMETGDVIVSVNDTCVLGHTH---AQVVKIFQSIPIGASVDLEL 101 (129)
T ss_dssp HHHSSCCTTCEEEEETTEECTTSCH---HHHHHHHHHSCTTEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCCCCCeEEEEE
Confidence 4558 99999999999999986432 24555555433 45555544
No 155
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=46.24 E-value=4.6 Score=30.00 Aligned_cols=45 Identities=24% Similarity=0.441 Sum_probs=29.9
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~ 101 (217)
++.| +++|-.+++|||.+|.+.... ++.+.+....+ ++.|...+.
T Consensus 65 ~~aG~L~~GD~Il~Ing~~v~~~~~~---~~~~~~~~~~~-~v~l~v~R~ 110 (124)
T 2daz_A 65 AADGRMRIGDELLEINNQILYGRSHQ---NASAIIKTAPS-KVKLVFIRN 110 (124)
T ss_dssp HHHTCCCTTCEECEESSCBCTTSCHH---HHHHHHHHSCS-EEEEEEEEC
T ss_pred HHcCCCCCCCEEEEECCEECCCCCHH---HHHHHHHcCCC-eEEEEEEeC
Confidence 4568 999999999999999864332 34444533332 666665443
No 156
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=46.01 E-value=5.9 Score=28.59 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=28.5
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.+|.+... .++.+.+... ..++.|...+
T Consensus 52 ~~aG~l~~GD~I~~vng~~v~~~~~---~~~~~~l~~~-g~~v~l~v~R 96 (111)
T 2dlu_A 52 DRDGRLQTGDHILKIGGTNVQGMTS---EQVAQVLRNC-GNSVRMLVAR 96 (111)
T ss_dssp HHHTCCCSSCEEEEESSCCCTTSCH---HHHHHHHHHH-CSEEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhC-CCeEEEEEEe
Confidence 3558 99999999999999876332 3444555432 3455555433
No 157
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=45.93 E-value=5.8 Score=27.83 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=29.7
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.+... .++.+.+.... .++.+...+
T Consensus 44 ~~aG~l~~GD~I~~vng~~v~~~~~---~~~~~~~~~~~-~~v~l~v~R 88 (98)
T 2opg_A 44 CKDGRLWAGDQILEVNGIDLRKATH---DEAINVLRQTP-QRVRLTLYR 88 (98)
T ss_dssp HHHCCCCTTCEEEEETTEECTTCCH---HHHHHHHHTCC-SEEEEEEEE
T ss_pred HhCCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCC-CeEEEEEEc
Confidence 4558 99999999999999876432 24555555443 566665543
No 158
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.87 E-value=6.4 Score=28.95 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.2
Q ss_pred cccc-eeeeeeEEeeeceeeccc
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNG 74 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~ 74 (217)
++.| ++.|-.+++|||.+|.+.
T Consensus 61 ~~aG~L~~GD~Il~vng~~v~~~ 83 (120)
T 2eno_A 61 ALDGRLQEGDKILSVNGQDLKNL 83 (120)
T ss_dssp HHSCCSCTTCEEEEETTEECCSC
T ss_pred HHCCCCCCCCEEEEECCEECCCC
Confidence 4568 999999999999998864
No 159
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=45.05 E-value=3.6 Score=30.97 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=29.9
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCC------CCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKP------ESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~------~n~Pl~l~~~~ 100 (217)
+++| +++|-.+++|||.++.+.... ++.+.|... ...++.|...+
T Consensus 69 ~~aG~L~~GD~Il~Vng~~v~~~~~~---~~~~~l~~~~~~~g~~~~~v~l~v~R 120 (127)
T 1wg6_A 69 FKDGRLRMNDQLIAVNGETLLGKSNH---EAMETLRRSMSMEGNIRGMIQLVILR 120 (127)
T ss_dssp HHHHTSCSCCBEEEETTEESTTSCHH---HHHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred HHCCCCCCCCEEEEECCEECCCCCHH---HHHHHHHHhhccccCCCCEEEEEEEe
Confidence 5678 999999999999998874322 455555432 34556654433
No 160
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=44.86 E-value=7.5 Score=27.89 Aligned_cols=42 Identities=14% Similarity=0.313 Sum_probs=27.1
Q ss_pred ccc-ceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeee
Q psy15590 53 QRD-GILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTF 98 (217)
Q Consensus 53 ~~~-~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~ 98 (217)
++. |+++|-.+++|||.+|.+.... ++.+.+... ..++.|..
T Consensus 55 ~~aggL~~GD~Il~vng~~v~~~~~~---~~~~~~~~~-~~~v~l~v 97 (107)
T 1uhp_A 55 AKEGGLQIHDRIIEVNGRDLSRATHD---QAVEAFKTA-KEPIVVQV 97 (107)
T ss_dssp HHTTCCCSSCEEEEETTEECTTCCHH---HHHHHHHHC-CSSEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCHH---HHHHHHHcC-CCcEEEEE
Confidence 456 8999999999999998753322 344444432 34555544
No 161
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=44.68 E-value=7.9 Score=28.24 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=30.0
Q ss_pred ccccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 52 GQRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 52 g~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
.++.| +++|-.+++|||.+|.+.... ++.+.+.. ...++.|...+
T Consensus 63 A~~aG~L~~GD~Il~vng~~v~~~~~~---~~~~~~~~-~g~~v~l~v~r 108 (117)
T 2ehr_A 63 AGKTNALKTGDKILEVSGVDLQNASHS---EAVEAIKN-AGNPVVFIVQS 108 (117)
T ss_dssp TTSSCSCCTTCEEEEESSCBCTTCCHH---HHHHHHHT-SCSSEEEEECC
T ss_pred HHHcCCCCCCCEEEEECCEECCCCCHH---HHHHHHHc-CCCeEEEEEEE
Confidence 45668 999999999999998764322 34444543 34566665443
No 162
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=44.42 E-value=6.7 Score=27.74 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=28.5
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.+|.+... .++...+.. ...++.+...+
T Consensus 49 ~~aG~l~~GD~I~~vng~~v~~~~~---~~~~~~~~~-~~~~v~l~v~r 93 (104)
T 3i4w_A 49 DLSGELRKGDQILSVNGVDLRNASH---EQAAIALKN-AGQTVTIIAQY 93 (104)
T ss_dssp HHHCCCCTTEEEEEETTEECTTCCH---HHHHHHHHT-SCSEEEEEEEE
T ss_pred HhcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHc-CCCeEEEEEEE
Confidence 3458 99999999999999876433 234444443 33456665433
No 163
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=44.31 E-value=5.3 Score=29.68 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=32.1
Q ss_pred ceeeeeeEEeeeceeecccccCCCcchhhhccC-CCCCCeeeeeCCCC
Q psy15590 56 GILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSK-PESFPVKLTFTRPR 102 (217)
Q Consensus 56 ~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~-~~n~Pl~l~~~~~~ 102 (217)
.+++|=.+++|||.+|.|.... +|.++|.+ +...++.|+.-+|+
T Consensus 46 ~L~vGD~I~~VNG~~v~g~~h~---evv~lLk~~~~g~~~~L~lv~p~ 90 (95)
T 3gge_A 46 TICVGDHIESINGENIVGWRHY---DVAKKLKELKKEELFTMKLIEPK 90 (95)
T ss_dssp TCCTTCEEEEETTEECTTCCHH---HHHHHHHHSCTTCEEEEEEEEEC
T ss_pred CCCCCCEEEEECCEEccCCCHH---HHHHHHHhCCCCCEEEEEEECcc
Confidence 5899999999999999986553 45566654 45566777766664
No 164
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=44.24 E-value=8.4 Score=26.34 Aligned_cols=22 Identities=32% Similarity=0.598 Sum_probs=18.9
Q ss_pred cc-cceeeeeeEEeeeceeeccc
Q psy15590 53 QR-DGILVGHVLTAVNDAVIKNG 74 (217)
Q Consensus 53 ~~-~~~~~g~~~~~~ng~~~~~~ 74 (217)
++ -|++.|-.+++|||.++.+.
T Consensus 42 ~~~agl~~GD~I~~vng~~v~~~ 64 (87)
T 4e34_A 42 DRCGGLHVGDAILAVNGVNLRDT 64 (87)
T ss_dssp HHHSCCCTTEEEEEETTEECTTC
T ss_pred HhcCCCCCCCEEEEECCEECCCC
Confidence 45 49999999999999998864
No 165
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=44.05 E-value=6.1 Score=28.38 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=28.8
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| +++|-.+++|||.++.+.... ++...+... ..++.|...+
T Consensus 54 ~~aG~L~~GD~I~~vng~~v~~~~~~---~~~~~~~~~-~~~v~l~v~R 98 (107)
T 1wf8_A 54 QRDGRIQVNDQIVEVDGISLVGVTQN---FAATVLRNT-KGNVRFVIGR 98 (107)
T ss_dssp HHHCSSCTTCBEEEETTEECBSCCHH---HHHHHHHHC-CSEEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCHH---HHHHHHhcC-CCeEEEEEEe
Confidence 4568 999999999999998763322 344444432 4566665443
No 166
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=43.92 E-value=4.7 Score=29.64 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=23.8
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhcc
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLS 87 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~ 87 (217)
++-|++.|-.+++|||.+|.+...+ ++.+++.
T Consensus 49 ~~aGL~~GD~Il~vng~~v~~~~~~---~l~~~l~ 80 (94)
T 3kzd_A 49 SKKGLKAGDEILEINNRAADALNSS---MLKDFLS 80 (94)
T ss_dssp HHTTCCTTCEEEEETTEEGGGCCHH---HHHHHHH
T ss_pred HHcCCCCCCEEEEECCEECCCCCHH---HHHHHHh
Confidence 5569999999999999999874332 3555554
No 167
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=43.92 E-value=7 Score=28.05 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=29.2
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.+... .++...+.. ...++.+...+
T Consensus 53 ~~aG~L~~GD~Il~Vng~~v~~~~~---~~~~~~~~~-~~~~v~l~v~r 97 (113)
T 1um7_A 53 DLSGELRRGDRILSVNGVNLRNATH---EQAAAALKR-AGQSVTIVAQY 97 (113)
T ss_dssp HHTTCCCTTCEEEEESSCBCTTCCH---HHHHHHHHS-CCSEEEEEEEC
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHh-CCCcEEEEEEE
Confidence 3558 99999999999999876432 234444443 34566666544
No 168
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=42.29 E-value=8.6 Score=30.20 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=19.2
Q ss_pred cccceeeeeeEEeeeceeecccc
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQ 75 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~ 75 (217)
++ |++.|-.+++|||.++.+..
T Consensus 38 ~~-gl~~GD~I~~vng~~v~~~~ 59 (195)
T 2qbw_A 38 SK-LLQPGDKIIQANGYSFINIE 59 (195)
T ss_dssp TT-TCCTTCEEEEETTEECTTCC
T ss_pred Hh-CCCCCCEEEEECCEECCCCC
Confidence 46 99999999999999998753
No 169
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=42.14 E-value=5.3 Score=35.91 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=0.0
Q ss_pred ccccceeeeeeEEeeeceeecccccCCCcchhhhccC
Q psy15590 52 GQRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSK 88 (217)
Q Consensus 52 g~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~ 88 (217)
.++.|++.|..+++|||.+|.|... .++.+.|..
T Consensus 328 A~~aGL~~GD~Il~VNg~~v~~~s~---~~~~~~l~~ 361 (388)
T 3suz_A 328 AERGGVRVGHRIIEINGQSVVATAH---EKIVQALSN 361 (388)
T ss_dssp -------------------------------------
T ss_pred HHHcCCCCCCEEEEECCEECCCCCH---HHHHHHHHh
Confidence 4678999999999999999987433 345555543
No 170
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=41.30 E-value=9.6 Score=28.47 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=29.9
Q ss_pred ccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 54 RDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 54 ~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
+-|++.|-.+++|||.+|....+ .++.+.|... ..++.|...|
T Consensus 61 ~aGL~~GD~Il~Vng~~v~~~~~---~dl~~~l~~~-g~~v~l~v~R 103 (118)
T 2yub_A 61 RNAIHPGDRILEINGTPVRTLRV---EEVEDAIKQT-SQTLQLLIEH 103 (118)
T ss_dssp HHHCCTTCCEEEESSSBTTTSCH---HHHHHHHHCC-SSCEEEEEEE
T ss_pred HcCCCCCCEEEEECCEECCCcCH---HHHHHHHHhC-CCEEEEEEEE
Confidence 45899999999999999764311 3566666665 6666665543
No 171
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=41.16 E-value=8.1 Score=26.83 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.4
Q ss_pred cccceeeeeeEEeeeceeecc
Q psy15590 53 QRDGILVGHVLTAVNDAVIKN 73 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~ 73 (217)
++-|++.|-.+++|||.+|..
T Consensus 33 ~~aGl~~GD~I~~ing~~v~~ 53 (87)
T 2i6v_A 33 ESIGLQDGDMAVALNGLDLTD 53 (87)
T ss_dssp HHTTCCTTCEEEEETTEETTC
T ss_pred HHCCCCCCCEEEEECCEECCC
Confidence 566999999999999999863
No 172
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=41.16 E-value=9.5 Score=27.19 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=17.7
Q ss_pred cceeeeeeEEeeeceeeccc
Q psy15590 55 DGILVGHVLTAVNDAVIKNG 74 (217)
Q Consensus 55 ~~~~~g~~~~~~ng~~~~~~ 74 (217)
-|++.|-.+++|||.++.+.
T Consensus 54 agl~~GD~I~~vng~~v~~~ 73 (107)
T 2h2b_A 54 GQLQENDRVAMVNGVSMDNV 73 (107)
T ss_dssp TTBCTTCEEEEETTEECTTC
T ss_pred hCCCCCCEEEEECCEECCCc
Confidence 58999999999999998753
No 173
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=40.63 E-value=50 Score=25.11 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=31.8
Q ss_pred EEEEEEEeCCCcEEEEEecCC-------chhHHHHHHHHHHHH--Hhhhh
Q psy15590 142 FKLHCYQTLTGVKFMIVGDTN-------QSGLDLILKKIYELY--ADYAL 182 (217)
Q Consensus 142 yklh~yeT~TGiKFVlitd~~-------~~~l~~~L~~IYelY--vdyVl 182 (217)
-.++.-+|-.|+|.+++-.|. ..++..+|+++.+.- .+||+
T Consensus 62 gsvsivetkngykylvirhpdggthtvpktdisailkelcevkkdleyvl 111 (131)
T 2x5c_A 62 GSVSIVETKNGYKYLVIRHPDGGTHTVPKTDISAILKELCEVKKDLEYVL 111 (131)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCcEEEEEECCCCCccccccccHHHHHHHHHHHHHhHHHHH
Confidence 467888999999999998875 457888999888643 45554
No 174
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=40.57 E-value=8.5 Score=27.43 Aligned_cols=44 Identities=18% Similarity=0.040 Sum_probs=28.7
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCC-CCCeeeeeCCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPE-SFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~-n~Pl~l~~~~~ 101 (217)
++-|++.|-.+++|||.+|.. -.++.+.|.... ..++.+...|.
T Consensus 16 ~~aGl~~GD~I~~ing~~v~~-----~~d~~~~l~~~~~~~~v~l~v~R~ 60 (95)
T 3id1_A 16 AEAQIAPGTELKAVDGIETPD-----WDAVRLQLVDKIGDESTTITVAPF 60 (95)
T ss_dssp HHTTCCTTCEEEEETTEECSS-----HHHHHHHHHHTTTCSEEEEEEECT
T ss_pred HHcCCCCCCEEEEECCEECCC-----HHHHHHHHHHhcCCCcEEEEEEEC
Confidence 456999999999999999763 234555554332 25566655443
No 175
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=40.33 E-value=5.3 Score=29.62 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=30.4
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.++.|...+ ++.+.|....+. +.+...+
T Consensus 59 ~~aG~L~~GD~Il~ing~~v~~~~~~---~~~~~l~~~~~~-v~l~v~r 103 (125)
T 3hpk_A 59 ALDGTVAAGDEITGVNGRSIKGKTKV---EVAKMIQEVKGE-VTIHYNK 103 (125)
T ss_dssp HHHCCCCTTCEEEEETTEECTTCCHH---HHHHHHHHSCSE-EEEEEEE
T ss_pred HHCCCCCCCCEEEEECCEECCCCCHH---HHHHHHHcCCCe-EEEEEEE
Confidence 4568 999999999999998875433 455566554443 6665544
No 176
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=40.23 E-value=8.5 Score=30.53 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=30.9
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCC-CCCeeeeeC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPE-SFPVKLTFT 99 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~-n~Pl~l~~~ 99 (217)
++.| ++.|-.+++|||.++.+... .++.++|.... ..++.+...
T Consensus 50 ~~aG~l~~GD~I~~vng~~v~~~~~---~~~~~~l~~~~~g~~v~l~v~ 95 (196)
T 1p1d_A 50 ERCGVLQIGDRVMAINGIPTEDSTF---EEANQLLRDSSITSKVTLEIE 95 (196)
T ss_dssp HHTSCCCSSCCEEEETTBCSTTSCH---HHHHHHHHTCCSSSEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCCCCCeEEEEEE
Confidence 4559 99999999999999986322 35666676554 456666553
No 177
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=40.05 E-value=8 Score=29.98 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=30.8
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.+|.+... .++.+.|.+. ..++.|...+
T Consensus 144 ~~aG~L~~GD~Il~Vng~~v~~~~~---~~~~~~l~~~-~~~v~l~v~R 188 (196)
T 3gsl_A 144 HKDGRLQIGDKILAVNSVGLEDVMH---EDAVAALKNT-YDVVYLKVAK 188 (196)
T ss_dssp HHHCCCCTTCEEEEETTEECSSCBH---HHHHHHHHSC-CEEEEEEEEE
T ss_pred HhcCCCCCCCEEEEECCCcCCCCCH---HHHHHHHHcC-CCeEEEEEeC
Confidence 4568 99999999999999886322 3466666543 5666665544
No 178
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=39.41 E-value=12 Score=30.17 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=37.8
Q ss_pred CceeEEeeccccceeeeeeEEeeeceeecccccCCCc---chhhhccCC--CCCCeeee
Q psy15590 44 NKKIVVSFGQRDGILVGHVLTAVNDAVIKNGQLDDGT---DVLEFLSKP--ESFPVKLT 97 (217)
Q Consensus 44 ~~~~~v~~g~~~~~~~g~~~~~~ng~~~~~~~~~dg~---~~~~~~~~~--~n~Pl~l~ 97 (217)
.+++++.-|++|||+.|-.|++-+| +.|+-.+=+. .|+-+.+.. ..-|..+.
T Consensus 22 ~~~i~IdkG~~dGv~~gm~Vi~~~G--lVG~V~~V~~~~S~V~Litd~~~~s~v~v~v~ 78 (172)
T 2qf4_A 22 KQELTLDAGRSKGASENMLAIANGG--LIGSVSKVEENSTIVNLLTNTENADKISVKIQ 78 (172)
T ss_dssp SCEEEESCCGGGTCCTTCEEEETTE--EEEEEEEECSSCEEEEETTCSBCCSCCEEEEE
T ss_pred ccEEEEeCCcccCCCCCCEEEECCC--cEEEEEEECCCeEEEEEEECCCCCEEEEEEEE
Confidence 4567888899999999999999998 6787755333 365555555 45566664
No 179
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=38.07 E-value=7.1 Score=28.49 Aligned_cols=44 Identities=9% Similarity=0.136 Sum_probs=27.3
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.+|.+... .++...+ .+...++.|...+
T Consensus 56 ~~aGL~~GD~Il~vng~~v~~~~~---~~~~~~~-~~~g~~v~l~v~r 99 (117)
T 1uit_A 56 HQAGLEYGDQLLEFNGINLRSATE---QQARLII-GQQCDTITILAQY 99 (117)
T ss_dssp HHHTCCTTCEECEETTEETTTCCH---HHHHHHT-TSCCSEEEEEECC
T ss_pred HHcCCCCCCEEEEECCEECCCCCH---HHHHHHH-HcCCCeEEEEEEE
Confidence 455899999999999999875321 1112112 2345566666554
No 180
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=37.90 E-value=10 Score=27.67 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=25.9
Q ss_pred cceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeee
Q psy15590 55 DGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTF 98 (217)
Q Consensus 55 ~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~ 98 (217)
-|++.|-.+++|||.+|.+... .++.+.+.. ...++.|..
T Consensus 61 ~gL~~GD~I~~Vng~~v~~~~~---~~~~~~l~~-~~~~v~l~v 100 (117)
T 2csj_A 61 GLLQENDRVVMVNGTPMEDVLH---SFAVQQLRK-SGKIAAIVV 100 (117)
T ss_dssp HHBCTTCEEEEESSCBCBTCCH---HHHHHHHHH-SCSEEEEEE
T ss_pred ccCCCCCEEEEECCEECCCcCH---HHHHHHHhc-CCCeEEEEE
Confidence 5799999999999999876332 234444443 244555544
No 181
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=37.88 E-value=9.6 Score=27.77 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=26.9
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFT 99 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~ 99 (217)
++.| ++.|-.+++|||.++.+... .++...+.. ...++.+...
T Consensus 52 ~~aG~L~~GD~I~~vng~~v~~~~~---~~~~~~~~~-~~~~v~l~v~ 95 (119)
T 1tp5_A 52 DLSGELRKGDQILSVNGVDLRNASH---EQAAIALKN-AGQTVTIIAQ 95 (119)
T ss_dssp HHHSCCCTTEEEEEETTEECTTCCH---HHHHHHHHT-SCSEEEEEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHc-CCCeEEEEEE
Confidence 3448 99999999999999876421 123333333 2445666543
No 182
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=36.16 E-value=12 Score=27.01 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=26.9
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccC-CCCCCeeeee
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSK-PESFPVKLTF 98 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~-~~n~Pl~l~~ 98 (217)
++-|++.|-.+++|||.+|.. -.++.+++.. +...++.+..
T Consensus 51 ~~aGl~~GDvI~~ing~~v~~-----~~d~~~~~~~~~~g~~v~l~v 92 (105)
T 2i4s_A 51 ESIGLQDGDMAVALNGLDLTD-----PNVMNTLFQSMNEMTEMSLTV 92 (105)
T ss_dssp HHHTCCTTCEEEEETTEETTS-----TTHHHHHHHHHTTCSEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCC-----HHHHHHHHHhcCCCCeEEEEE
Confidence 456999999999999999763 2344444443 3345555544
No 183
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=34.75 E-value=14 Score=31.73 Aligned_cols=44 Identities=11% Similarity=0.250 Sum_probs=32.6
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccC-CCCCCeeeeeCCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSK-PESFPVKLTFTRP 101 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~-~~n~Pl~l~~~~~ 101 (217)
++-|++.|-.+++|||.++.. -.++.++|.. +...++.|...|.
T Consensus 258 ~~aGL~~GD~I~~ing~~v~~-----~~~l~~~l~~~~~g~~v~l~v~R~ 302 (318)
T 1te0_A 258 ANAGIQVNDLIISVDNKPAIS-----ALETMDQVAEIRPGSVIPVVVMRD 302 (318)
T ss_dssp TTTCCCTTCCEEEETTEECCC-----HHHHHHHHHTSCTTCEEEEEEESS
T ss_pred HHCCCCCCCEEEEECCEEcCC-----HHHHHHHHHhcCCCCEEEEEEEEC
Confidence 456899999999999999763 2466677765 5667777776553
No 184
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=33.83 E-value=6.3 Score=28.88 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=28.0
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeee
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKL 96 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l 96 (217)
++.| ++.|-.+++|||.+|.+... .++.+.+....+..+.+
T Consensus 56 ~~aG~L~~GD~Il~ing~~v~~~~~---~~~~~~l~~~~~~~~~l 97 (119)
T 1x6d_A 56 SQEGTIQKGNEVLSINGKSLKGTTH---HDALAILRQAREPRQAV 97 (119)
T ss_dssp HHHTSSCTTCBCCEETTEECSSCCH---HHHHHHHHHTTSSSEEE
T ss_pred HHcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhCCCCeEEE
Confidence 5679 99999999999999986432 24555554444444433
No 185
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=33.32 E-value=12 Score=28.43 Aligned_cols=41 Identities=27% Similarity=0.282 Sum_probs=27.9
Q ss_pred cceeeeeeEEeeeceeecccccCCCcchhhhccCC-CCCCeeeeeCC
Q psy15590 55 DGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKP-ESFPVKLTFTR 100 (217)
Q Consensus 55 ~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~-~n~Pl~l~~~~ 100 (217)
-|++.|=.+++|||.+|.. -.++.+.+... ...++.+...|
T Consensus 72 aGL~~GD~I~~inG~~v~~-----~~~l~~~l~~~~~g~~v~l~v~R 113 (134)
T 2l97_A 72 GHLEKYDVITKVDDKEIAS-----STDLQSALYNHSIGDTIKITYYR 113 (134)
T ss_dssp TTSCSSCEEEEETTEECCC-----HHHHHHHHHHSSTTCEEEEEEEE
T ss_pred HCCCCCCEEEEECCEEcCC-----HHHHHHHHHhCCCCCEEEEEEEE
Confidence 6899999999999999864 23455555443 45566665543
No 186
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=32.30 E-value=12 Score=33.92 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.8
Q ss_pred cccceeeeeeEEeeeceeecc
Q psy15590 53 QRDGILVGHVLTAVNDAVIKN 73 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~ 73 (217)
++.|++.|-.+++|||.+|.+
T Consensus 45 ~~aGL~~GD~Il~VnG~~v~~ 65 (391)
T 3tsz_A 45 AKEGLEEGDQILRVNNVDFTN 65 (391)
T ss_dssp HHTTCCTTEEEEEETTEECTT
T ss_pred HHcCCCCCCEEEEECCEECCC
Confidence 456999999999999999976
No 187
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=32.02 E-value=16 Score=28.13 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.0
Q ss_pred cccceeeeeeEEeeeceeeccc
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNG 74 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~ 74 (217)
++.|++.|..+++|||.++...
T Consensus 121 ~~aGl~~GD~I~~ing~~v~~~ 142 (166)
T 1w9e_A 121 ARNGLLTEHNICEINGQNVIGL 142 (166)
T ss_dssp HHTTCCSSEEEEEETTEECTTC
T ss_pred HHcCCCCCCEEEEECCEECCCC
Confidence 4678999999999999998753
No 188
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=31.92 E-value=26 Score=23.50 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhh
Q psy15590 167 DLILKKIYELYADYA 181 (217)
Q Consensus 167 ~~~L~~IYelYvdyV 181 (217)
.+|+.+|||+|+.-+
T Consensus 28 ~~Fl~~IHeAYl~sl 42 (51)
T 2wx3_A 28 SSFLSTLHEVYLQVL 42 (51)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 579999999999855
No 189
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=31.86 E-value=1.5e+02 Score=21.73 Aligned_cols=73 Identities=10% Similarity=0.221 Sum_probs=43.2
Q ss_pred eeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCCCCCchhhHHHhhhhhcH----HHHHhhhCCCCCCCce
Q psy15590 59 VGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPL----FAIASQLSPEPKSSGI 134 (217)
Q Consensus 59 ~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~~l~sne~llLag~l~SL----~~i~~kLsp~~~s~g~ 134 (217)
.|.+++.-+|.|+. +.++..+....|++++.| ++..+.|.|.+. --|
T Consensus 19 ~G~iI~n~~G~pir----------------------------st~d~~~~~~yA~~~~~L~~~a~~~vrdlDp~de-l~f 69 (97)
T 3l7h_A 19 VGTIVVNNEGIPVK----------------------------STLDNTTTVQYAGLMSQLADKARSVVRDLDPSND-MTF 69 (97)
T ss_dssp EEEEEEETTSCEEE----------------------------ESSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC-EEE
T ss_pred eEEEEECCCCCEeE----------------------------EeCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-eEE
Confidence 57788887888854 134556677788888888 455567888532 233
Q ss_pred eEEecCcEEEEEEEeCCCcEEEEEecC
Q psy15590 135 EVLEADTFKLHCYQTLTGVKFMIVGDT 161 (217)
Q Consensus 135 ~~~~T~~yklh~yeT~TGiKFVlitd~ 161 (217)
.-++|..+.+-.-- -..+-+|++.++
T Consensus 70 LRiRTkk~EimIaP-d~~f~liVvQ~~ 95 (97)
T 3l7h_A 70 LRVRSKKHEIMVAP-DKDFILIVIQNP 95 (97)
T ss_dssp EEEEESSCEEEEEE-ETTEEEEEEEC-
T ss_pred EEEEeCCcEEEEEc-CCCEEEEEEecC
Confidence 44567777655442 223334444443
No 190
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=31.34 E-value=17 Score=31.06 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=37.9
Q ss_pred cCceeEEeeccccceeeeeeEEeeeceeecccccCCCc---chhhhccCCC--CCCeeee
Q psy15590 43 ENKKIVVSFGQRDGILVGHVLTAVNDAVIKNGQLDDGT---DVLEFLSKPE--SFPVKLT 97 (217)
Q Consensus 43 ~~~~~~v~~g~~~~~~~g~~~~~~ng~~~~~~~~~dg~---~~~~~~~~~~--n~Pl~l~ 97 (217)
-.+++++.-|++|||+.|-.|++-+| +.|+-.+=|. .|+-+++... +-|..+.
T Consensus 83 ~~~~i~IdkGs~dGV~~gm~Vi~~~G--lVG~V~~V~~~~S~V~litd~~~~s~v~v~v~ 140 (255)
T 2j5u_A 83 WNDQVEIDKGSSDGVKPDMAVTTPSG--LIGKVTTTGAKSATVELLTSSDVKNRVSAKVQ 140 (255)
T ss_dssp TTTEEEESCCGGGTCCTTCEEEETTE--EEEEEEEECSSCEEEEETTCCCTTCCEEEEEC
T ss_pred cceEEEEeCCcccCCCCCCEEEECCc--cEEEEEEECCCeEEEEEEECCCCCeeEEEEEe
Confidence 34678888999999999999999998 6787764333 3555555552 4566664
No 191
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=31.27 E-value=20 Score=28.35 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=34.7
Q ss_pred ceeEEeeccccce-eeeeeEEee------eceeecccc-cCCCcchhhhccCCCC
Q psy15590 45 KKIVVSFGQRDGI-LVGHVLTAV------NDAVIKNGQ-LDDGTDVLEFLSKPES 91 (217)
Q Consensus 45 ~~~~v~~g~~~~~-~~g~~~~~~------ng~~~~~~~-~~dg~~~~~~~~~~~n 91 (217)
..++|..|..+|+ .|.--...+ ||.+|.|-. ..||+.|.|+...-..
T Consensus 22 ~dVqVe~Gp~pgtLlVsW~Pvt~~~~g~Snga~VtGY~VYadGqkV~eV~~PTad 76 (130)
T 2csp_A 22 QDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFPTAD 76 (130)
T ss_dssp EEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESSSSEEEEECCTTCS
T ss_pred ceeEEEeCCCCcEEEEEeECCcccCCCCCCCcceEEEEEEeCCcEEEEecCCCCC
Confidence 5578888999986 344444443 899999987 6899999998765443
No 192
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=30.65 E-value=40 Score=32.21 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=41.2
Q ss_pred cCccccccccCceeEEee------ccccceeeeeeEEeeeceeecccccCCCcchhhhccC-CCCCCeeeeeCC
Q psy15590 34 FPLNIKLTPENKKIVVSF------GQRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSK-PESFPVKLTFTR 100 (217)
Q Consensus 34 ~p~~~~l~~~~~~~~v~~------g~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~-~~n~Pl~l~~~~ 100 (217)
+-|.+.+...++.++|.- .++-|++.|=.+++|||.+|+. .++.++|.. +...++.|...|
T Consensus 485 ~~lG~~~~~~~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~~------~~l~~~l~~~~~g~~v~l~v~R 552 (597)
T 4fgm_A 485 VNFGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATE------QSVKRILERYIPGDTVTIHAFR 552 (597)
T ss_dssp CCCSEEEEEETTEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCT------TTHHHHHTTCCTTCEEEEEEEE
T ss_pred cccceEEeccCCeEEEEEeCCCChHHHCCCCCCCEEEEECCEECCH------HHHHHHHHhcCCCCEEEEEEEE
Confidence 456666666665566543 2345999999999999999852 345566654 556777776544
No 193
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=30.25 E-value=17 Score=26.14 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=26.3
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFT 99 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~ 99 (217)
++-|++.|-.+++|||.++.. -.++.+.+.. +.++.+...
T Consensus 49 ~~aGl~~GD~I~~ing~~v~~-----~~~~~~~l~~--~~~v~l~v~ 88 (113)
T 2pzd_A 49 HRAGLRPGDVILAIGEQMVQN-----AEDVYEAVRT--QSQLAVQIR 88 (113)
T ss_dssp HHHTCCTTCEEEEETTEECCS-----HHHHHHHHHH--CSSEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCC-----HHHHHHHHhC--CCeEEEEEE
Confidence 355899999999999999762 2345555544 345555443
No 194
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=29.84 E-value=16 Score=28.13 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=27.7
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeee
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTF 98 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~ 98 (217)
++.|++.|-.+++|||.++.+..- ..+.+++......++.+..
T Consensus 41 ~~aGl~~GD~I~~ing~~v~~~~~---~~~~~~~~~~~~~~v~l~v 83 (166)
T 1w9e_A 41 SLVGLRFGDQVLQINGENCAGWSS---DKAHKVLKQAFGEKITMTI 83 (166)
T ss_dssp HHTTCCTTCEEEEETTEECTTCCH---HHHHHHHHHCCSSEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCCCCH---HHHHHHHhcCCCCEEEEEE
Confidence 345999999999999999875321 0233444444444555554
No 195
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=28.74 E-value=8 Score=32.24 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=28.8
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCe-eeee
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPV-KLTF 98 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl-~l~~ 98 (217)
++.|++.|-.+++|||.+|.|.... ++.++|... ..++ .+..
T Consensus 47 ~~aGL~~GD~Il~VNG~~V~~~s~~---dl~~~l~~~-g~~v~~l~V 89 (216)
T 2krg_A 47 EASGLRAQDRIVEVNGVCMEGKQHG---DVVSAIRAG-GDETKLLVV 89 (216)
T ss_dssp HHHTCCTTCBCCEETTEECTTCCTH---HHHHHHHHH-CSEEEEEEC
T ss_pred HHcCCCCCCEEEEECCEECCCCCHH---HHHHHHHhc-CCeEEEEEE
Confidence 4558999999999999999875443 455555443 4455 5544
No 196
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=28.73 E-value=20 Score=32.49 Aligned_cols=42 Identities=17% Similarity=0.296 Sum_probs=30.4
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.+|.. -.++.+++..+.. ++.|...|
T Consensus 377 ~~aGL~~GD~I~~vng~~v~~-----~~~~~~~l~~~~~-~v~l~v~R 418 (436)
T 4a8c_A 377 AQAGLQKDDVIIGVNRDRVNS-----IAEMRKVLAAKPA-IIALQIVR 418 (436)
T ss_pred HHcCCCCCCEEEEECCEECCC-----HHHHHHHHHhCCC-eEEEEEEE
Confidence 467999999999999999752 3466677766443 66665544
No 197
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=28.30 E-value=19 Score=25.86 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=17.0
Q ss_pred ccceeeeeeEEeeeceeec
Q psy15590 54 RDGILVGHVLTAVNDAVIK 72 (217)
Q Consensus 54 ~~~~~~g~~~~~~ng~~~~ 72 (217)
+-|++.|-.+++|||.++.
T Consensus 50 ~aGl~~GD~I~~ing~~v~ 68 (112)
T 2p3w_A 50 RGGIQDGDIIVKVNGRPLV 68 (112)
T ss_dssp HHTCCTTCEEEEETTEECC
T ss_pred HCCCCCCCEEEEECCEECC
Confidence 4599999999999999975
No 198
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=27.14 E-value=25 Score=31.99 Aligned_cols=59 Identities=15% Similarity=0.288 Sum_probs=37.4
Q ss_pred ccCccccccccCc-----eeEEee------ccccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeee
Q psy15590 33 QFPLNIKLTPENK-----KIVVSF------GQRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTF 98 (217)
Q Consensus 33 ~~p~~~~l~~~~~-----~~~v~~------g~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~ 98 (217)
+|-+++.+....+ .+.|.. .++-|++.|-.+++|||.+|.+.. +.+.+.. ...++.|..
T Consensus 73 ~~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~------~~~~l~~-~g~~v~l~v 142 (403)
T 3k50_A 73 SYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV------ESELLQG-STRQLQIGV 142 (403)
T ss_dssp BCSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT------GGGGTSC-SCEEEEEEE
T ss_pred ccceEEEEEEcCCCCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh------HHHHhhC-CCCEEEEEE
Confidence 4666666654322 133432 345699999999999999998742 4455555 555555544
No 199
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=26.69 E-value=25 Score=31.80 Aligned_cols=46 Identities=11% Similarity=0.248 Sum_probs=32.8
Q ss_pred eEEecCcEEEEEEEeCCCcEEEEEecCCch--hHHHHHHHHHHHHHhhh
Q psy15590 135 EVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYA 181 (217)
Q Consensus 135 ~~~~T~~yklh~yeT~TGiKFVlitd~~~~--~l~~~L~~IYelYvdyV 181 (217)
..++++.+++ .|....++-|+++++.+++ .+-++|+++.++.-+|.
T Consensus 48 ~~i~~~~~~~-vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~~l~~yf 95 (423)
T 1w63_M 48 PILAHGGVRF-MWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYF 95 (423)
T ss_dssp SEEEETTEEE-EEEEETTEEEEEEESSCCCTHHHHHHHHHHHHHHHHHS
T ss_pred CEEEECCEEE-EEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456667664 4566778999999987754 45677888888777776
No 200
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=26.68 E-value=20 Score=28.32 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=28.1
Q ss_pred ccc-ceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeC
Q psy15590 53 QRD-GILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFT 99 (217)
Q Consensus 53 ~~~-~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~ 99 (217)
++. |++.|-.+++|||.++.+... .++.+.+... ..++.+...
T Consensus 47 ~~aggl~~GD~I~~vng~~v~~~~~---~~~~~~~~~~-g~~v~l~v~ 90 (200)
T 2qt5_A 47 ARSDQLDVGDYIKAVNGINLAKFRH---DEIISLLKNV-GERVVLEVE 90 (200)
T ss_dssp HHTTSCCTTCEEEEETTEECTTSCH---HHHHHHHHTC-CSEEEEEEE
T ss_pred HhcCCCCCCCEEEEECCEECCCCCH---HHHHHHHHhC-CCeEEEEEe
Confidence 355 999999999999999886432 2344555433 335555543
No 201
>3r4r_A Hypothetical fimbrial assembly protein; transthyretin-like (ALSO known AS prealbumin-like), structur genomics; 2.38A {Parabacteroides distasonis}
Probab=26.18 E-value=38 Score=29.63 Aligned_cols=56 Identities=21% Similarity=0.176 Sum_probs=30.7
Q ss_pred EEEEEeccceeEEecccCCCccccceecccCccccccccCceeEEe-eccccceeeeeeEEe
Q psy15590 5 GVYIVSKSGGLIFNYDHNVPKIENAVTFQFPLNIKLTPENKKIVVS-FGQRDGILVGHVLTA 65 (217)
Q Consensus 5 ~~~i~~~~~~~i~~~d~~~~~~~~~~t~~~p~~~~l~~~~~~~~v~-~g~~~~~~~g~~~~~ 65 (217)
.+.|||.+|.||+..+...+.....++. +-...++-+.+-+. ||..|+ ||.-.|+|
T Consensus 48 ~VAVFD~~G~~I~fq~f~~~nLset~tI----dnL~gY~l~L~gl~tfG~~dk-kvs~~VVA 104 (296)
T 3r4r_A 48 HVAVFDKDGKRIYFKNFYSKDLGEMKTI----GNLSGYELQLEGVRTFGKEDK-KVSVLVVA 104 (296)
T ss_dssp EEEEECTTSBEEEEEEEEHHHHCCCEEE----TTEEEEEEEEEEEEECCSSCE-EEEEEEEE
T ss_pred EEEEEcCCCCEEEEEeccCCCcccceee----cccceeEEEeecccccccccc-ceEEEEEe
Confidence 4789999999999887743333222232 22222333334443 776665 45544443
No 202
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=26.14 E-value=19 Score=27.82 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.5
Q ss_pred cccc-eeeeeeEEeeeceeecc
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKN 73 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~ 73 (217)
++.| ++.|-.+++|||.++.+
T Consensus 49 ~~aG~l~~GD~I~~vng~~v~~ 70 (196)
T 3gsl_A 49 AQDGRLRVNDSILFVNEVDVRE 70 (196)
T ss_dssp HHHCCCCTTCEEEEETTEECTT
T ss_pred HhcCCCCCCCEEEEECCEECCC
Confidence 4579 99999999999999875
No 203
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=25.34 E-value=19 Score=28.33 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=30.0
Q ss_pred cccc-eeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDG-ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~-~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.| ++.|-.+++|||.+|.+.... -.++...+....+.++.+...+
T Consensus 59 ~~aG~L~~GD~Il~vng~~v~~~~~~-~~~~~~~~~~~~~~~v~l~v~R 106 (206)
T 3r0h_A 59 AADKRLKIFDHICDINGTPIHVGSMT-TLKVHQLFHTTYEKAVTLTVFR 106 (206)
T ss_dssp HHHCCCCTTCEEEEETTEECCGGGSC-HHHHHHHHHSCCSSEEEEEEEC
T ss_pred HhcCCCCCCCEEEEECCEEcCCCccC-HHHHHHHHHhcCCCceEEEEEe
Confidence 4567 999999999999998861111 1134455555555545555444
No 204
>2d7e_A Primosomal protein N'; inter-twined, hydrolase; 2.50A {Escherichia coli} PDB: 2d7g_A* 2d7h_A* 2dwl_A 2dwm_A 2dwn_A*
Probab=24.66 E-value=1.1e+02 Score=22.14 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=21.9
Q ss_pred ceecccCccccc-cccCceeEEeeccccceeeeeeE
Q psy15590 29 AVTFQFPLNIKL-TPENKKIVVSFGQRDGILVGHVL 63 (217)
Q Consensus 29 ~~t~~~p~~~~l-~~~~~~~~v~~g~~~~~~~g~~~ 63 (217)
.++|+|-++-.+ -..+.++.|-||.|. ...|.++
T Consensus 13 ~~~f~Y~vp~~l~~~~G~rV~VPfg~r~-~~~G~V~ 47 (105)
T 2d7e_A 13 PRTFDYLLPEGMTVKAGCRVRVPFGKQQ-ERIGIVV 47 (105)
T ss_dssp SCCEEEECCTTCCCCTTCEEEEEETTTE-EEEEEEE
T ss_pred CCCEEEeCCCcCCCCCCcEEEEeCCCcc-EEEEEEE
Confidence 467887554443 346889999999854 1345544
No 205
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=24.30 E-value=27 Score=31.91 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=31.2
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~ 100 (217)
++.|++.|-.+++|||.+|.. -.++.++|.. ...++.|...|
T Consensus 400 ~~aGL~~GD~I~~Vng~~v~~-----~~~~~~~l~~-~~~~v~l~v~R 441 (451)
T 3pv2_A 400 WRAGIRPGDIIISANKKPVTD-----VKSLQTIAQE-KKKELLVQVLR 441 (451)
T ss_dssp HHHTCCTTCEEEEETTEECCS-----HHHHHHHTTS-SCSCEEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCC-----HHHHHHHHhc-CCCeEEEEEEE
Confidence 467999999999999999863 2467777776 45666665543
No 206
>4epi_A Pesticin, lysozyme chimera; bacterial toxin, toxin, hydrolase; 1.74A {Yersinia pestis} PDB: 4exm_A 4arj_A
Probab=24.24 E-value=27 Score=31.53 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=55.0
Q ss_pred CceeEEeecc-ccceeeeeeEEeeeceeecccccCCCcchhhhccCCCCCCeeeeeCCCCCCchhhHHHhhhhhcHHHHH
Q psy15590 44 NKKIVVSFGQ-RDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIA 122 (217)
Q Consensus 44 ~~~~~v~~g~-~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~~~n~Pl~l~~~~~~l~sne~llLag~l~SL~~i~ 122 (217)
.++++|.-|| +||+||= -++...|....+-.--|-+++.+.|.|..|.-+.- +|.-+-+-++ -.|.++-
T Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~l 161 (330)
T 4epi_A 92 EQKITVETGQEKDGVKVY-RVMVLEGTIAESIEHLDKKENEDILNNNRNRIVLA--------DNTVINFDNI-SQLKEFL 161 (330)
T ss_dssp TSCEEEEEEEEETTEEEE-EEEEEEECHHHHHHHHTCGGGHHHHHTSEEEEECT--------TSCEEEESSH-HHHHHHH
T ss_pred eeeeEeecccccCceeEE-EEEEeccchhhhhhhcCccchhhhhcccccceeec--------ccccccCccH-HHHHHHH
Confidence 3678888885 7999984 44555666555555557777888888777654321 2222211111 1222221
Q ss_pred h-hhCCCCCCCceeEE-ecCcEEEEEEEeCCCcEEEE
Q psy15590 123 S-QLSPEPKSSGIEVL-EADTFKLHCYQTLTGVKFMI 157 (217)
Q Consensus 123 ~-kLsp~~~s~g~~~~-~T~~yklh~yeT~TGiKFVl 157 (217)
+ .++. ..+..+ .-+.+++..|.-+.|++=|-
T Consensus 162 ~~~vn~----t~iaLIK~~EG~RlkaY~DpaGVwTIG 194 (330)
T 4epi_A 162 RRSVNI----VCFEMLRCDEGLRLKIYKDTEGYYTIG 194 (330)
T ss_dssp HHHHHG----GGHHHHHHHHCCEEEEEECTTSCEEEE
T ss_pred hhhhhH----HHHHHHHHhcCCcceeeECCCCCeEEE
Confidence 1 1111 112222 24567888888888887666
No 207
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=24.10 E-value=26 Score=30.13 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=23.1
Q ss_pred eCCCcEEEEEecCCchhHHHHHHHHHH
Q psy15590 149 TLTGVKFMIVGDTNQSGLDLILKKIYE 175 (217)
Q Consensus 149 T~TGiKFVlitd~~~~~l~~~L~~IYe 175 (217)
++.|..-+++...+...+..-|+.|+.
T Consensus 233 s~dG~~t~~l~~~d~~~a~~W~~ai~~ 259 (263)
T 1z87_A 233 AADGQDAVFLRAKDEASARSWAGAIQA 259 (263)
T ss_dssp ETTTTEEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCeeEEEEECCHHHHHHHHHHHHH
Confidence 478888888888889999999988884
No 208
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=23.88 E-value=32 Score=29.48 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=29.8
Q ss_pred cccceeeeeeEEeeeceeecccccCCCcchhhhccC-CCCCCeeeeeCC
Q psy15590 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSK-PESFPVKLTFTR 100 (217)
Q Consensus 53 ~~~~~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~-~~n~Pl~l~~~~ 100 (217)
++-|++.|=.+++|||.+|... .++.+++.. +...++.|...|
T Consensus 256 ~~aGl~~GD~I~~ing~~v~~~-----~~l~~~l~~~~~g~~v~l~v~R 299 (324)
T 1y8t_A 256 ANAGVPKGVVVTKVDDRPINSA-----DALVAAVRSKAPGATVALTFQD 299 (324)
T ss_dssp TTTTCCTTCEEEEETTEECCSH-----HHHHHHHHTSCTTCEEEEEEEC
T ss_pred HHcCCCCCCEEEEECCEECCCH-----HHHHHHHHhcCCCCEEEEEEEE
Confidence 3558999999999999997642 355556643 455666666654
No 209
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=23.15 E-value=45 Score=24.99 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=29.3
Q ss_pred eeeeeeEEeeeceeecccccCCCcchhhhccC-CCCCCeeeeeCCC
Q psy15590 57 ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSK-PESFPVKLTFTRP 101 (217)
Q Consensus 57 ~~~g~~~~~~ng~~~~~~~~~dg~~~~~~~~~-~~n~Pl~l~~~~~ 101 (217)
++.|-.+++|||.+|.. -.++.+.+.. +...++.+.. |.
T Consensus 42 L~~GD~Il~InG~~v~~-----~~dl~~~l~~~~~g~~v~l~V-R~ 81 (125)
T 2hga_A 42 LTPGLVIESINGMPTSN-----LTTYSAALKTISVGEVINITT-DQ 81 (125)
T ss_dssp SCTTCEEEEETTEECSS-----HHHHHHHHTTCCTTCEEEEEE-TT
T ss_pred cCCCCEEEEECCEEcCC-----HHHHHHHHHhcCCCCEEEEEE-EC
Confidence 89999999999999763 3456666663 5667888877 53
No 210
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=23.15 E-value=26 Score=30.95 Aligned_cols=20 Identities=45% Similarity=0.542 Sum_probs=16.7
Q ss_pred ceeEEeeccccceeeee-eEE
Q psy15590 45 KKIVVSFGQRDGILVGH-VLT 64 (217)
Q Consensus 45 ~~~~v~~g~~~~~~~g~-~~~ 64 (217)
+..+|+.|..||+..|| .|+
T Consensus 20 ~~~vvtiG~FDGvH~GHq~li 40 (308)
T 3op1_A 20 SDSVVVLGYFDGIHKGHQELF 40 (308)
T ss_dssp SCEEEEESCCSSCCHHHHHHH
T ss_pred CCeEEEEecCCcccHHHHHHH
Confidence 45679999999999999 444
No 211
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*
Probab=21.55 E-value=1.6e+02 Score=21.96 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=30.5
Q ss_pred HhhhhhcHHHHHhhhCCCCCCCceeEEecCcEEEEEEE
Q psy15590 111 LASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQ 148 (217)
Q Consensus 111 Lag~l~SL~~i~~kLsp~~~s~g~~~~~T~~yklh~ye 148 (217)
-+|.+.+|..-|+||.|.+...-.-+++++.-.+...+
T Consensus 41 ~AG~i~~la~~AakL~p~~~~~P~I~LEsDs~~~~Iqk 78 (99)
T 3msh_A 41 HAGVISVLAQQAAKLTSDPTDIPVVCLESDNGNIMIQK 78 (99)
T ss_dssp GHHHHHHHHHHHHHTCCCSSCCCCEEEEETTEEEEEEE
T ss_pred cchHHHHHHHHHHhcCCCCCCCCEEEEEeCCceEEEEe
Confidence 37888999999999999865455678888888776655
No 212
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=20.77 E-value=44 Score=23.41 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=17.1
Q ss_pred eeEEeeeceeec-----ccccCCCcch
Q psy15590 61 HVLTAVNDAVIK-----NGQLDDGTDV 82 (217)
Q Consensus 61 ~~~~~~ng~~~~-----~~~~~dg~~~ 82 (217)
++.++|||+.+. .+.|.||-+|
T Consensus 58 ~~~v~VN~~~v~~~~~~~~~L~~gDeV 84 (93)
T 3dwg_C 58 FVNIYVNDEDVRFSGGLATAIADGDSV 84 (93)
T ss_dssp TEEEEETTEEGGGTTGGGCBCCTTCEE
T ss_pred CEEEEECCEEccCcCCCCcCCCCCCEE
Confidence 688999999987 4567787653
No 213
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=20.45 E-value=37 Score=22.28 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhh
Q psy15590 167 DLILKKIYELYADYA 181 (217)
Q Consensus 167 ~~~L~~IYelYvdyV 181 (217)
.+|+.+||++|++-+
T Consensus 26 ~~Fl~~iHeAYl~sl 40 (46)
T 2wx4_A 26 KEFANKLHKAYLNGC 40 (46)
T ss_dssp TTHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHH
Confidence 468999999999854
Done!