RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15590
(217 letters)
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 140
Score = 78.4 bits (193), Expect = 3e-19
Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 99 TRPRMTTNEKIFLASMF--YPLFAIASQLSPEPKSSGIEVLEA-DTFKLHCYQTLTGVKF 155
+ + + + F + + + + ++ ++ + + + + T ++F
Sbjct: 24 PPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRF 83
Query: 156 MIVGDT-NQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 209
+++ D + G+ +Y+LY +A+ NPFY PIR FD +Q L ++H
Sbjct: 84 IMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKH 137
>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 27.9 bits (62), Expect = 0.31
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 9/69 (13%)
Query: 35 PLNIKLTPENKKIVV------SFGQRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSK 88
+ ++L + I V S G+ G + +N D + L +
Sbjct: 15 KIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD---KAHKVLKQ 71
Query: 89 PESFPVKLT 97
+ +T
Sbjct: 72 AFGEKITMT 80
>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 27.1 bits (60), Expect = 0.54
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 50 SFGQRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101
S ++ G+L G L VN ++ V+ + + V+L P
Sbjct: 38 SPAEKAGLLAGDRLVEVNGENVEKETHQ---QVVSRIRAALN-AVRLLVVDP 85
>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId:
1280]}
Length = 173
Score = 28.0 bits (62), Expect = 0.72
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 39 KLTPENKKIVV---SFGQRDGILVGHVLTAVNDAVIKNGQ 75
LT NK I + R+G+ GH + V +A + NGQ
Sbjct: 94 NLTKNNKGIAILGSRVESRNGMHAGHAMAVVGNAKLNNGQ 133
>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 96
Score = 26.1 bits (57), Expect = 1.4
Identities = 8/69 (11%), Positives = 20/69 (28%), Gaps = 7/69 (10%)
Query: 39 KLTPENKKIVVSFGQRDG-------ILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPES 91
E + + G + G L ++N + ++ ++
Sbjct: 28 INRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSE 87
Query: 92 FPVKLTFTR 100
P ++ F R
Sbjct: 88 SPWEIAFIR 96
>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 26.0 bits (57), Expect = 1.4
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 100
R G+ VG L VN ++ + + +E L + V++ R
Sbjct: 53 ARAGVRVGDKLLEVNGVALQGAEHH---EAVEALRGAGT-AVQMRVWR 96
>d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB
esterase) {Bacillus subtilis [TaxId: 1423]}
Length = 483
Score = 27.0 bits (58), Expect = 2.0
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 127 PEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS 164
PEP +VL+A + C Q + QS
Sbjct: 41 PEPPEVWEDVLDATAYGPICPQPSDLLSLSYTELPRQS 78
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase,
C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}
Length = 105
Score = 25.6 bits (56), Expect = 2.1
Identities = 8/56 (14%), Positives = 21/56 (37%)
Query: 141 TFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCE 196
F ++ T+ G + G+ + G K I ++ + P + ++ +
Sbjct: 9 RFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAG 64
>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 25.2 bits (55), Expect = 2.4
Identities = 6/49 (12%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 53 QRDGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRP 101
+R G+ + +N+ +++ + ++ + S + L R
Sbjct: 32 ERAGLQQLDTVLQLNERPVEHWKCV---ELAHEIRSCPS-EIILLVWRM 76
>d1w7ca2 d.17.2.1 (A:43-169) Lysyl oxidase PplO, domains 1 and 2
{Yeast (Pichia pastoris) [TaxId: 4922]}
Length = 127
Score = 25.1 bits (55), Expect = 4.1
Identities = 7/58 (12%), Positives = 16/58 (27%), Gaps = 2/58 (3%)
Query: 40 LTPENKKIVVSFGQRDGILVGHVLTAVNDAVIK--NGQLDDGTDVLEFLSKPESFPVK 95
L E + V+ + + + T+ L +L + P +
Sbjct: 22 LAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDEDGDLPPR 79
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 25.5 bits (55), Expect = 6.4
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 184 NPFYSLEMPIRCELFDTHLQNL 205
P E IR E F ++ +
Sbjct: 202 FPASRDEHCIRVEFFGDEIERI 223
>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId:
1280]}
Length = 183
Score = 24.9 bits (54), Expect = 6.9
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 39 KLTPENKKIVVS----FGQRDGILVGHVLTAVNDAVIKNGQ 75
+LT +N I++ + +GH L V +A I + +
Sbjct: 104 QLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQE 144
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
10090]}
Length = 382
Score = 25.0 bits (54), Expect = 8.4
Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 55 DGILVGHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFT 99
D +++ ++ V++ V++ G++ + + PE +L FT
Sbjct: 321 DAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPE----ELVFT 361
>d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C,
MoaC {Escherichia coli [TaxId: 562]}
Length = 146
Score = 24.5 bits (53), Expect = 8.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 1 MVIYGVYIVSKSGG 14
MVI V +++KSGG
Sbjct: 127 MVIGPVRLLAKSGG 140
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.401
Gapped
Lambda K H
0.267 0.0609 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 788,375
Number of extensions: 35890
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 14
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)