BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15591
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q6T|A Chain A, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|B Chain B, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|C Chain C, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|D Chain D, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
Length = 444
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 98 RTCTSQLQINLFMVDHVCMMEGTGTG 123
R SQ Q+ L ++D++ +M G G+G
Sbjct: 303 RRLVSQNQVGLIIIDYLQLMSGPGSG 328
>pdb|1T5A|A Chain A, Human Pyruvate Kinase M2
pdb|1T5A|B Chain B, Human Pyruvate Kinase M2
pdb|1T5A|C Chain C, Human Pyruvate Kinase M2
pdb|1T5A|D Chain D, Human Pyruvate Kinase M2
Length = 567
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 34 SEASAQECQTRQIYCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNGCCVKMVRNSRTQF 93
SEA QT+Q++ D++ +H C+ L D PP+ N + + +
Sbjct: 42 SEAGTAFIQTQQLHAAMADTFLEHMCR-------LDIDSPPITARNTGIICTIGPASRSV 94
Query: 94 ESIRRTCTSQLQINLFMVDH 113
E+++ S + + H
Sbjct: 95 ETLKEMIKSGMNVARLNFSH 114
>pdb|1ZJH|A Chain A, Structure Of Human Muscle Pyruvate Kinase (Pkm2)
pdb|4B2D|A Chain A, Human Pkm2 With L-serine And Fbp Bound.
pdb|4B2D|B Chain B, Human Pkm2 With L-serine And Fbp Bound.
pdb|4B2D|C Chain C, Human Pkm2 With L-serine And Fbp Bound
Length = 548
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 34 SEASAQECQTRQIYCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNGCCVKMVRNSRTQF 93
SEA QT+Q++ D++ +H C+ L D PP+ N + + +
Sbjct: 23 SEAGTAFIQTQQLHAAMADTFLEHMCR-------LDIDSPPITARNTGIICTIGPASRSV 75
Query: 94 ESIRRTCTSQLQINLFMVDH 113
E+++ S + + H
Sbjct: 76 ETLKEMIKSGMNVARLNFSH 95
>pdb|4B2D|D Chain D, Human Pkm2 With L-serine And Fbp Bound
Length = 548
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 34 SEASAQECQTRQIYCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNGCCVKMVRNSRTQF 93
SEA QT+Q++ D++ +H C+ L D PP+ N + + +
Sbjct: 23 SEAGTAFIQTQQLHAAMADTFLEHMCR-------LDIDSPPITARNTGIICTIGPASRSV 75
Query: 94 ESIRRTCTSQLQINLFMVDH 113
E+++ S + + H
Sbjct: 76 ETLKEMIKSGMNVARLNFSH 95
>pdb|3U2Z|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3U2Z|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3U2Z|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3U2Z|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
Length = 533
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 34 SEASAQECQTRQIYCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNGCCVKMVRNSRTQF 93
SEA QT+Q++ D++ +H C+ L D PP+ N + + +
Sbjct: 8 SEAGTAFIQTQQLHAAMADTFLEHMCR-------LDIDSPPITARNTGIICTIGPASRSV 60
Query: 94 ESIRRTCTSQLQINLFMVDH 113
E+++ S + + H
Sbjct: 61 ETLKEMIKSGMNVARLNFSH 80
>pdb|3SRF|C Chain C, Human M1 Pyruvate Kinase
pdb|3SRF|A Chain A, Human M1 Pyruvate Kinase
pdb|3SRF|B Chain B, Human M1 Pyruvate Kinase
pdb|3SRF|D Chain D, Human M1 Pyruvate Kinase
pdb|3SRF|E Chain E, Human M1 Pyruvate Kinase
pdb|3SRF|F Chain F, Human M1 Pyruvate Kinase
pdb|3SRF|G Chain G, Human M1 Pyruvate Kinase
pdb|3SRF|H Chain H, Human M1 Pyruvate Kinase
Length = 551
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 34 SEASAQECQTRQIYCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNGCCVKMVRNSRTQF 93
SEA QT+Q++ D++ +H C+ L D PP+ N + + +
Sbjct: 26 SEAGTAFIQTQQLHAAMADTFLEHMCR-------LDIDSPPITARNTGIICTIGPASRSV 78
Query: 94 ESIRRTCTSQLQINLFMVDH 113
E+++ S + + H
Sbjct: 79 ETLKEMIKSGMNVARLNFSH 98
>pdb|3SRD|A Chain A, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
Bisphosphate And Oxalate.
pdb|3SRD|B Chain B, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
Bisphosphate And Oxalate.
pdb|3SRD|C Chain C, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
Bisphosphate And Oxalate.
pdb|3SRD|D Chain D, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
Bisphosphate And Oxalate.
pdb|3SRH|A Chain A, Human M2 Pyruvate Kinase
pdb|3SRH|B Chain B, Human M2 Pyruvate Kinase
pdb|3SRH|C Chain C, Human M2 Pyruvate Kinase
pdb|3SRH|D Chain D, Human M2 Pyruvate Kinase
Length = 551
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 34 SEASAQECQTRQIYCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNGCCVKMVRNSRTQF 93
SEA QT+Q++ D++ +H C+ L D PP+ N + + +
Sbjct: 26 SEAGTAFIQTQQLHAAMADTFLEHMCR-------LDIDSPPITARNTGIICTIGPASRSV 78
Query: 94 ESIRRTCTSQLQINLFMVDH 113
E+++ S + + H
Sbjct: 79 ETLKEMIKSGMNVARLNFSH 98
>pdb|3GQY|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GQY|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GQY|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GQY|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GR4|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GR4|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GR4|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GR4|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3H6O|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3H6O|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3H6O|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3H6O|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3ME3|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3ME3|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3ME3|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3ME3|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
Length = 550
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 34 SEASAQECQTRQIYCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNGCCVKMVRNSRTQF 93
SEA QT+Q++ D++ +H C+ L D PP+ N + + +
Sbjct: 25 SEAGTAFIQTQQLHAAMADTFLEHMCR-------LDIDSPPITARNTGIICTIGPASRSV 77
Query: 94 ESIRRTCTSQLQINLFMVDH 113
E+++ S + + H
Sbjct: 78 ETLKEMIKSGMNVARLNFSH 97
>pdb|3G2G|A Chain A, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
pdb|3G2G|B Chain B, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
pdb|3G2G|C Chain C, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
pdb|3G2G|D Chain D, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
Length = 533
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 34 SEASAQECQTRQIYCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNGCCVKMVRNSRTQF 93
SEA QT+Q++ D++ +H C+ L D PP+ N + + +
Sbjct: 8 SEAGTAFIQTQQLHAAMADTFLEHMCR-------LDIDSPPITARNTGIICTIGPASRSV 60
Query: 94 ESIRRTCTSQLQINLFMVDH 113
E+++ S + + H
Sbjct: 61 ETLKEMIKSGMNVARLNFSH 80
>pdb|3BJT|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJT|B Chain B, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJT|C Chain C, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJT|D Chain D, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
Length = 530
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 34 SEASAQECQTRQIYCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNGCCVKMVRNSRTQF 93
SEA QT+Q++ D++ +H C+ L D PP+ N + + +
Sbjct: 5 SEAGTAFIQTQQLHAAMADTFLEHMCR-------LDIDSPPITARNTGIICTIGPASRSV 57
Query: 94 ESIRRTCTSQLQINLFMVDH 113
E+++ S + + H
Sbjct: 58 ETLKEMIKSGMNVARLNFSH 77
>pdb|3N25|A Chain A, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|B Chain B, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|C Chain C, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|D Chain D, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|E Chain E, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|F Chain F, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|G Chain G, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|H Chain H, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
Length = 531
Score = 27.3 bits (59), Expect = 4.3, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 34 SEASAQECQTRQIYCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNGCCVKMVRNSRTQF 93
SEA + QT+Q++ D++ +H+C+ L D P+ N + + +
Sbjct: 6 SEAGSAFIQTQQLHAAMADTFLEHKCR-------LDIDSAPITARNTGIICTIGPASRSV 58
Query: 94 ESIRRTCTSQLQINLFMVDH 113
E+++ S + + H
Sbjct: 59 ETLKEMIKSGMNVARMNFSH 78
>pdb|2G50|A Chain A, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|B Chain B, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|C Chain C, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|D Chain D, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|E Chain E, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|F Chain F, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|G Chain G, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|H Chain H, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase
Length = 530
Score = 27.3 bits (59), Expect = 4.3, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 34 SEASAQECQTRQIYCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNGCCVKMVRNSRTQF 93
SEA + QT+Q++ D++ +H+C+ L D P+ N + + +
Sbjct: 5 SEAGSAFIQTQQLHAAMADTFLEHKCR-------LDIDSAPITARNTGIICTIGPASRSV 57
Query: 94 ESIRRTCTSQLQINLFMVDH 113
E+++ S + + H
Sbjct: 58 ETLKEMIKSGMNVARMNFSH 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.133 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,107,750
Number of Sequences: 62578
Number of extensions: 134150
Number of successful extensions: 367
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 364
Number of HSP's gapped (non-prelim): 14
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)