Query psy15591
Match_columns 159
No_of_seqs 103 out of 272
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 16:31:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00117 LU Ly-6 antigen / uPA 97.9 2.2E-05 4.7E-10 53.8 5.1 65 46-136 1-79 (79)
2 PF01064 Activin_recp: Activin 97.4 0.00044 9.5E-09 47.5 5.3 76 46-138 1-80 (83)
3 smart00134 LU Ly-6 antigen / u 97.4 0.00047 1E-08 47.2 5.4 65 46-134 1-79 (79)
4 PF00021 UPAR_LY6: u-PAR/Ly-6 96.9 0.0022 4.7E-08 41.6 4.6 64 48-134 1-77 (77)
5 PF00087 Toxin_1: Snake toxin; 96.7 0.0054 1.2E-07 40.9 5.4 41 81-134 22-63 (63)
6 cd00206 snake_toxin Snake toxi 96.4 0.0081 1.8E-07 40.2 4.8 41 81-134 23-64 (64)
7 PF06579 Ly-6_related: Caenorh 95.5 0.016 3.4E-07 44.3 3.4 62 74-136 39-129 (129)
8 PF05444 DUF753: Protein of un 94.6 0.074 1.6E-06 41.0 5.0 73 49-137 1-77 (152)
9 KOG3653|consensus 91.4 2.3 5E-05 39.3 10.2 58 81-139 68-131 (534)
10 PF02988 PLA2_inh: Phospholipa 77.6 10 0.00022 26.9 5.8 66 47-135 2-83 (83)
11 KOG2052|consensus 77.3 10 0.00023 34.9 7.2 54 80-135 54-109 (513)
12 PF01684 ET: ET module; Inter 75.4 6.3 0.00014 27.8 4.3 60 76-137 18-81 (82)
13 PF01307 Plant_vir_prot: Plant 42.0 50 0.0011 24.2 4.1 32 123-156 55-86 (104)
14 PRK03625 tatE twin arginine tr 41.1 23 0.00049 24.1 2.0 16 18-33 5-20 (67)
15 PF08917 ecTbetaR2: Transformi 39.9 23 0.00051 26.7 2.1 56 81-137 37-101 (118)
16 PRK00442 tatA twin arginine tr 37.4 30 0.00065 25.0 2.2 17 17-33 4-20 (92)
17 COG1826 TatA Sec-independent p 36.3 28 0.00061 24.7 2.0 17 17-33 4-20 (94)
18 PRK00404 tatB sec-independent 35.3 28 0.0006 27.1 1.9 17 18-34 5-21 (141)
19 PRK00708 sec-independent trans 34.8 27 0.00058 28.8 1.8 16 18-33 5-20 (209)
20 PF13677 MotB_plug: Membrane M 31.6 63 0.0014 20.9 2.9 24 13-36 11-41 (58)
21 PRK14857 tatA twin arginine tr 31.4 39 0.00084 24.3 2.0 16 18-33 7-22 (90)
22 PRK03100 sec-independent trans 29.9 38 0.00083 26.1 1.9 16 18-33 6-21 (136)
23 PRK14859 tatA twin arginine tr 29.8 47 0.001 22.3 2.1 16 18-33 5-20 (63)
24 PRK03554 tatA twin arginine tr 29.8 46 0.001 24.0 2.1 17 18-34 5-21 (89)
25 PRK14860 tatA twin arginine tr 29.7 43 0.00093 22.5 1.9 17 18-34 5-21 (64)
26 PF02416 MttA_Hcf106: mttA/Hcf 29.4 49 0.0011 21.1 2.1 16 18-33 2-17 (53)
27 PRK08944 motB flagellar motor 29.4 55 0.0012 28.1 3.0 31 5-35 3-40 (302)
28 PRK14858 tatA twin arginine tr 29.0 42 0.00092 24.9 1.9 16 18-33 5-20 (108)
29 PRK01770 sec-independent trans 28.3 41 0.00089 26.9 1.9 16 18-33 5-20 (171)
30 PRK00182 tatB sec-independent 28.3 43 0.00094 26.5 2.0 17 18-34 6-22 (160)
31 PF12365 DUF3649: Protein of u 27.2 63 0.0014 18.3 2.0 21 12-32 4-24 (28)
32 PRK04598 tatA twin arginine tr 27.1 55 0.0012 23.1 2.1 16 18-33 5-20 (81)
33 PRK14861 tatA twin arginine tr 27.0 54 0.0012 21.8 2.0 17 17-33 5-21 (61)
34 PRK00575 tatA twin arginine tr 26.3 53 0.0011 23.8 2.0 16 18-33 5-20 (92)
35 PRK00191 tatA twin arginine tr 26.0 58 0.0013 23.2 2.1 16 18-33 4-19 (84)
36 PF13721 SecD-TM1: SecD export 25.7 68 0.0015 23.1 2.5 24 14-37 2-25 (101)
37 PRK01614 tatE twin arginine tr 25.1 62 0.0014 23.1 2.1 16 18-33 5-20 (85)
38 PRK01470 tatA twin arginine tr 25.1 63 0.0014 20.8 2.0 16 18-33 4-19 (51)
39 TIGR01410 tatB twin arginine-t 24.6 49 0.0011 23.0 1.5 16 18-33 4-19 (80)
40 PRK04654 sec-independent trans 24.5 54 0.0012 27.2 1.9 16 18-33 5-20 (214)
41 TIGR01411 tatAE twin arginine- 23.1 74 0.0016 19.9 2.0 16 18-33 3-18 (47)
42 PRK01919 tatB sec-independent 22.9 52 0.0011 26.3 1.5 16 18-33 5-20 (169)
43 PRK01833 tatA twin arginine tr 22.9 75 0.0016 22.0 2.1 16 18-33 5-20 (74)
44 PRK04098 sec-independent trans 22.7 60 0.0013 25.7 1.9 16 18-33 5-20 (158)
45 PF09324 DUF1981: Domain of un 22.1 35 0.00077 23.7 0.4 23 4-26 45-67 (86)
46 PF11027 DUF2615: Protein of u 21.1 1.1E+02 0.0024 22.5 2.8 6 128-133 32-37 (103)
47 PRK00720 tatA twin arginine tr 20.5 89 0.0019 21.9 2.1 16 19-34 6-21 (78)
No 1
>cd00117 LU Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these domains is similar to that of snake venom neurotoxins.
Probab=97.92 E-value=2.2e-05 Score=53.77 Aligned_cols=65 Identities=29% Similarity=0.660 Sum_probs=41.1
Q ss_pred eeEEEcCCCCCCCCCCCCCCCCCCCCCCCCccCcc---CceEEEEecCC----ceeEEEeccccCccccceeccCcccee
Q psy15591 46 IYCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNG---CCVKMVRNSRT----QFESIRRTCTSQLQINLFMVDHVCMME 118 (159)
Q Consensus 46 I~CY~CnS~~dp~C~Dpf~~~~~~~d~~p~~~c~~---~C~Kivq~~~g----~~~ivRR~C~~~~~~~~~~~d~~C~~~ 118 (159)
|+||.|.+.++..|..+. +||. .|.|.+..+.. ...++ |+|+.. |...
T Consensus 1 L~C~~C~~~~~~~C~~~~-------------~C~~~~~~C~~~~~~~~~~~~~~~~~~-rgC~~~-----------C~~~ 55 (79)
T cd00117 1 LECYSCTGVSTSSCSTET-------------NCPSPDDQCLTAVATVIEESVRLSLVV-RGCASD-----------CPFT 55 (79)
T ss_pred CccCcCCCCCCCCCCCCC-------------ccCCCCCEeeEEEEEEEeeccccceEE-CcccCC-----------CCCC
Confidence 589999876556774432 3643 59988877532 23356 699952 5332
Q ss_pred CC-------CCeEEEecCCCCCCCC
Q psy15591 119 GT-------GTGHMCFCEEDMCNAA 136 (159)
Q Consensus 119 ~~-------~~~~~C~C~~D~CN~A 136 (159)
.. +....| |++|+||++
T Consensus 56 ~~~~~~~~~~~~~~C-C~tD~CN~~ 79 (79)
T cd00117 56 NVFGQLSITFLKVSC-CQEDLCNAA 79 (79)
T ss_pred CccCccccceEeeee-CCCCccCCC
Confidence 11 122477 999999986
No 2
>PF01064 Activin_recp: Activin types I and II receptor domain; InterPro: IPR000472 Transforming growth factor-beta (TGF-beta) forms a family with other growth factors described in PDOC00223 from PROSITEDOC. The receptors for most of the members of this growth factor family are related. These proteins are receptor-type kinases of Ser/Thr type PDOC00100 from PROSITEDOC), which have a single transmembrane domain and a specific hydrophilic Cys-rich ligand-binding domain [, , ]. The C-terminal part of the extracellular domain is conserved. Some of the receptors of this family contain subclass-specific N-terminal extensions of this homology domain. The type I receptors also possess 7 extracellular residues preceding the cysteine box.; GO: 0004675 transmembrane receptor protein serine/threonine kinase activity, 0005024 transforming growth factor beta-activated receptor activity, 0016020 membrane; PDB: 3EVS_C 1BTE_A 1LX5_B 2GOO_C 2HLR_A 4FAO_W 2H64_C 2H62_D 1S4Y_C 1NYU_C ....
Probab=97.38 E-value=0.00044 Score=47.51 Aligned_cols=76 Identities=26% Similarity=0.611 Sum_probs=49.9
Q ss_pred eeEEEcCCCCCCCCCCCCCCCCCCCCCCCCccCc--cCceEEEEecCCc-eeEEEeccccCccccceeccCccceeC-CC
Q psy15591 46 IYCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCN--GCCVKMVRNSRTQ-FESIRRTCTSQLQINLFMVDHVCMMEG-TG 121 (159)
Q Consensus 46 I~CY~CnS~~dp~C~Dpf~~~~~~~d~~p~~~c~--~~C~Kivq~~~g~-~~ivRR~C~~~~~~~~~~~d~~C~~~~-~~ 121 (159)
|+|| |++.. |.+. ...|. ++|-+.+....+. ..+++|+|....+...... ..|...+ ..
T Consensus 1 l~C~-C~~~~---C~~~------------n~~C~t~~~Cf~~~~~~~~~~~~~~~~GC~~~~~~~~~~~-~~C~~~~~~~ 63 (83)
T PF01064_consen 1 LKCY-CDSDD---CNET------------NQTCETGGFCFTSWEQDNGGGVEIVKKGCWSNEEDCPLCR-NQCRSSSSPS 63 (83)
T ss_dssp EEEE-EETTC---HCTT------------TEEEEESCEEEEEEEEETTESEEEEEEEEEESTGGGTTTS-SSEEECSSST
T ss_pred CEeE-eCccc---CCCC------------CCEeCCCCEEEEEEEEeeccceeEEEcCccCCccCcceec-ceeeccCCCC
Confidence 6899 99653 6531 12354 5799999987764 5666679998765321011 5687743 35
Q ss_pred CeEEEecCCCCCCCCCC
Q psy15591 122 TGHMCFCEEDMCNAAMS 138 (159)
Q Consensus 122 ~~~~C~C~~D~CN~A~~ 138 (159)
...+|-|++|+||+..+
T Consensus 64 ~~~~CC~~~D~CN~~~~ 80 (83)
T PF01064_consen 64 SVVFCCCSGDFCNSNLS 80 (83)
T ss_dssp CEEEEEESSTTGGGSEE
T ss_pred CeEEECCCCCccCCCCC
Confidence 56788678999998754
No 3
>smart00134 LU Ly-6 antigen / uPA receptor -like domain. Three-fold repeated domain in urokinase-type plasminogen activator receptor; occurs singly in other GPI-linked cell-surface glycoproteins (Ly-6 family, CD59, thymocyte B cell antigen, Sgp-2). Topology of these domains is similar to that of snake venom neurotoxins.
Probab=97.38 E-value=0.00047 Score=47.23 Aligned_cols=65 Identities=23% Similarity=0.613 Sum_probs=39.1
Q ss_pred eeEEEcCCCCCCCCCCCCCCCCCCCCCCCCccCcc---CceEEEEec--CC-ceeEEEeccccCccccceeccCccceeC
Q psy15591 46 IYCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNG---CCVKMVRNS--RT-QFESIRRTCTSQLQINLFMVDHVCMMEG 119 (159)
Q Consensus 46 I~CY~CnS~~dp~C~Dpf~~~~~~~d~~p~~~c~~---~C~Kivq~~--~g-~~~ivRR~C~~~~~~~~~~~d~~C~~~~ 119 (159)
|+||.|.+..+..|..+ .+||. .|.|.+..+ .+ ..+++ |+|+.... |....
T Consensus 1 L~C~~C~~~~~~~C~~~-------------~~C~~~~~~C~~~~~~~~~~~~~~~~~-rgC~~~~~---------Cp~~~ 57 (79)
T smart00134 1 LQCYSCTGNPDSSCSSE-------------EECRSPDDVCLTVVAEVISGSVGSVVY-KGCATSPI---------CPGSH 57 (79)
T ss_pred CcceecCCcCCCCCCCc-------------ceeCCCCCEeEEEEEEEEecCCCceEE-cCccCCCC---------CCCCc
Confidence 58999987655566432 23643 699886543 22 45677 59994321 43221
Q ss_pred ----C-C--Ce-EEEecCCCCCC
Q psy15591 120 ----T-G--TG-HMCFCEEDMCN 134 (159)
Q Consensus 120 ----~-~--~~-~~C~C~~D~CN 134 (159)
. + .. .+| |++|+||
T Consensus 58 ~~~~~~~~~~~~~~C-C~tDlCN 79 (79)
T smart00134 58 SYEIHLTIANLKVSC-CQTDLCN 79 (79)
T ss_pred cccccccEEEEeeEe-cCCCCCC
Confidence 1 1 12 467 9999999
No 4
>PF00021 UPAR_LY6: u-PAR/Ly-6 domain omitted due to poor similarity.; InterPro: IPR001526 CD59 (also called 1F-5Ag, H19, HRF20, MACIF, MIRL, P-18 or protectin) inhibits formation of membrane attack complex (MAC), thus protecting cells from complement mediated lysis. It has a signalling role, as a GPI-anchored molecule, in T cell activation and appears to have some role in cell adhesion through CD2 (controversial). CD59 associates with C9, inhibiting incorporation into C5b-8 preventing terminal steps in polymerisation of the (MAC) in plasma membranes. Genetic defects in GPI-anchor attachment that cause a reduction or loss of both CD59 and CD55 on erythrocytes produce the symptoms of the disease paroxysmal nocturnal haemoglobinuria (PNH). A variety of GPI-linked cell-surface glycoproteins are composed of one or more copies of a conserved domain of about 100 amino-acid residues [], []. Among these proteins, U-PAR contains three tandem copies of the domain, while all the others are made up of a single domain. As shown in the following schematic, this conserved domain contains 10 cysteine residues involved in five disulphide bonds - in U-PAR, the first copy of the domain lacks the fourth disulphide bond. +------+ +------------------------+ +---+ | | | | | | xCxxCxxxxxxCxxxxxCxxxxxCxxxxxxxxxxxxxxxxxxCxxxxCxxxxxxxxxxxxxxCCxxxCxxxxxxxx | | | | +---------------------+ +--------------+ 'C': conserved cysteine involved in a disulphide bond. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/).; PDB: 2I9B_H 1YWH_E 3BT2_U 2FD6_U 3U74_U 3BT1_U 3U73_U 2L03_A 3LAQ_V 2J8B_A ....
Probab=96.89 E-value=0.0022 Score=41.64 Aligned_cols=64 Identities=28% Similarity=0.726 Sum_probs=40.1
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCCCCCCccCcc---CceEEEEecC--C-ceeEEEeccccCccccceeccCcccee---
Q psy15591 48 CYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNG---CCVKMVRNSR--T-QFESIRRTCTSQLQINLFMVDHVCMME--- 118 (159)
Q Consensus 48 CY~CnS~~dp~C~Dpf~~~~~~~d~~p~~~c~~---~C~Kivq~~~--g-~~~ivRR~C~~~~~~~~~~~d~~C~~~--- 118 (159)
||+|.+..+..|... ++||+ .|..++..+. + ...++.|+|+.... |...
T Consensus 1 C~~C~~~~~~~C~~~-------------~~C~~~~~~C~~~~~~~~~g~~~~~~~~kgC~~~~~---------C~~~~~~ 58 (77)
T PF00021_consen 1 CYSCYSPSSSSCSGE-------------VTCPGSEDVCYTATVTVTSGGNSVTLVSKGCATQSS---------CRFLSDF 58 (77)
T ss_dssp EEEEECSTTTTSCTE-------------EEECTTTSEEEEEEEEEETTTCCEEEEEEEEEETTC---------CSEEEEE
T ss_pred CCcccCCCCCCCCCC-------------CCcCCCCCeeEEEEEEeeecccCceEEEeeccccCC---------ccccccc
Confidence 899998877778542 35754 4988887653 2 23334469996432 6221
Q ss_pred -CCC--C-eEEEecCCCCCC
Q psy15591 119 -GTG--T-GHMCFCEEDMCN 134 (159)
Q Consensus 119 -~~~--~-~~~C~C~~D~CN 134 (159)
..+ + .++| |++|+||
T Consensus 59 ~~~~~~~~~~~C-C~~dlCN 77 (77)
T PF00021_consen 59 SNGGIIKVSVSC-CNTDLCN 77 (77)
T ss_dssp ESSSEECEEEEE-ESSTTTT
T ss_pred cccceeEEEEEe-CCCCCCC
Confidence 112 1 2678 9999999
No 5
>PF00087 Toxin_1: Snake toxin; InterPro: IPR003571 Snake toxins belong to a family of proteins [] which groups short and long neurotoxins, cytotoxins and short toxins, as well as a other miscellaneous venom peptides. Most of these toxins act by binding to the nicotinic acetylcholine receptors in the postsynaptic membrane of skeletal muscles and prevent the binding of acetylcholine, thereby blocking the excitation of muscles. Snake toxins are proteins that consist of sixty to seventy five amino acids. Among the invariant residues are eight cysteines all involved in disulphide bonds. The structure is small, disulphide-rich, nearly all beta sheet.; GO: 0005576 extracellular region; PDB: 3NEQ_B 2H5F_A 3PLC_A 1NOR_A 1UG4_A 1FFJ_A 1CCQ_A 1CB9_A 1VB0_A 1ONJ_A ....
Probab=96.68 E-value=0.0054 Score=40.94 Aligned_cols=41 Identities=27% Similarity=0.596 Sum_probs=28.6
Q ss_pred Cce-EEEEecCCceeEEEeccccCccccceeccCccceeCCCCeEEEecCCCCCC
Q psy15591 81 CCV-KMVRNSRTQFESIRRTCTSQLQINLFMVDHVCMMEGTGTGHMCFCEEDMCN 134 (159)
Q Consensus 81 ~C~-Kivq~~~g~~~ivRR~C~~~~~~~~~~~d~~C~~~~~~~~~~C~C~~D~CN 134 (159)
.|- |+........+++ |+|+.. |.....+....| |.+|.||
T Consensus 22 ~Cy~k~~~~~~~~~~~~-rGCa~t-----------CP~~~~~~~v~C-C~TD~CN 63 (63)
T PF00087_consen 22 ICYKKTWMDHPRGMRVE-RGCAAT-----------CPTPKPGEKVKC-CSTDKCN 63 (63)
T ss_dssp EEEEEEEEETSTEEEEE-EEEESS-----------SSSSBSSEEEEE-ESSTTTT
T ss_pred eeEEEEEecCCCCceEe-cchhcc-----------CcCCCCCCeEEE-cCCCCCC
Confidence 497 5555544567777 599953 755444556788 9999999
No 6
>cd00206 snake_toxin Snake toxin domain, present in short and long neurotoxins, cytotoxins and short toxins, and in other miscellaneous venom peptides. The toxin acts by binding to the nicotinic acetylcholine receptors in the postsynaptic membrane of skeletal muscles and preventing the binding of acetylcholine, thereby blocking the excitation of muscles. This domain contains 60-75 amino acids that are fixed by 4-5 disulfide bridges and is nearly all beta sheet; it exists as either monomers or dimers.
Probab=96.40 E-value=0.0081 Score=40.16 Aligned_cols=41 Identities=27% Similarity=0.542 Sum_probs=26.6
Q ss_pred CceEEEEec-CCceeEEEeccccCccccceeccCccceeCCCCeEEEecCCCCCC
Q psy15591 81 CCVKMVRNS-RTQFESIRRTCTSQLQINLFMVDHVCMMEGTGTGHMCFCEEDMCN 134 (159)
Q Consensus 81 ~C~Kivq~~-~g~~~ivRR~C~~~~~~~~~~~d~~C~~~~~~~~~~C~C~~D~CN 134 (159)
.|-|..-.. ....++. |+|+.. |.....+....| |++|.||
T Consensus 23 ~Cyk~~~~~~~~g~~i~-rGCa~t-----------CP~~~~~~~v~C-C~TD~CN 64 (64)
T cd00206 23 ICYKKSWKDTPRGVRIE-RGCAAT-----------CPKVKPGEYVTC-CTTDKCN 64 (64)
T ss_pred ccceeEEEcCCCCCEEE-ccccCc-----------CcCCCCCcceEe-cCCCCCC
Confidence 487664333 3445677 599953 754444445688 9999999
No 7
>PF06579 Ly-6_related: Caenorhabditis elegans ly-6-related protein; InterPro: IPR010558 This family consists of several Caenorhabditis elegans specific ly-6-related HOT and ODR proteins. These proteins are involved in the olfactory system. Odr-2 mutants are known to be defective in the ability to chemotax to odorants that are recognised by the two AWC olfactory neurons. Odr-2 encodes a membrane-associated protein related to the Ly-6 superfamily of GPI-linked signalling proteins [].
Probab=95.47 E-value=0.016 Score=44.28 Aligned_cols=62 Identities=24% Similarity=0.497 Sum_probs=39.5
Q ss_pred CCccCccCceEEEEec--CC---ceeEEEeccccCcc-ccce--------eccCccceeC---------------CCCeE
Q psy15591 74 PLMTCNGCCVKMVRNS--RT---QFESIRRTCTSQLQ-INLF--------MVDHVCMMEG---------------TGTGH 124 (159)
Q Consensus 74 p~~~c~~~C~Kivq~~--~g---~~~ivRR~C~~~~~-~~~~--------~~d~~C~~~~---------------~~~~~ 124 (159)
|.+.|+..|+-+++.. .| ...+|| +|.-.-- .+.. +....|..-+ ..++.
T Consensus 39 ~~~~C~s~Cvtl~e~~~~~gg~~~~~yIR-GC~~~I~~~G~n~t~t~~~~~~~~~C~~~~~s~Lf~~~~~~~~~~~~~v~ 117 (129)
T PF06579_consen 39 PTVPCSSICVTLFEPLDIFGGTRGFGYIR-GCLDSILRHGFNDTITLSFLDRRDICRRLRLSQLFPPGRRREHPSDSTVQ 117 (129)
T ss_pred ceeecCchheeeEeccccccccccccEEE-cCHHHHHHhCCCCchHHHHhcCCCeeeeccHHHhcCcccccccCCCCeEE
Confidence 4677988899999983 23 466895 9985431 0110 0112486411 12368
Q ss_pred EEecCCCCCCCC
Q psy15591 125 MCFCEEDMCNAA 136 (159)
Q Consensus 125 ~C~C~~D~CN~A 136 (159)
.|+|.+|+||+|
T Consensus 118 vCsC~gd~CN~s 129 (129)
T PF06579_consen 118 VCSCYGDRCNGS 129 (129)
T ss_pred EEEECCCccCCC
Confidence 999999999986
No 8
>PF05444 DUF753: Protein of unknown function (DUF753); InterPro: IPR008472 This entry contains sequences which are repeated in several uncharacterised proteins from Drosophila melanogaster.
Probab=94.61 E-value=0.074 Score=40.95 Aligned_cols=73 Identities=32% Similarity=0.593 Sum_probs=39.5
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCCCCCCccCcc---CceEEEEecCCceeEEEeccccCccccceeccCccceeCCCCeEE
Q psy15591 49 YECDSWKDHRCKDPFNYTVLPKDQPPLMTCNG---CCVKMVRNSRTQFESIRRTCTSQLQINLFMVDHVCMMEGTGTGHM 125 (159)
Q Consensus 49 Y~CnS~~dp~C~Dpf~~~~~~~d~~p~~~c~~---~C~Kivq~~~g~~~ivRR~C~~~~~~~~~~~d~~C~~~~~~~~~~ 125 (159)
|+|+|-.++.|.++-.... +...|++ .|.-++.. ...++ |+|....... ....|...+ ...
T Consensus 1 ~~C~s~~~~~C~~~~~~~~------~~~~C~~~~~~C~t~~~~---~~~~~-RGC~~~~~~~---~~~~C~~~~---~~~ 64 (152)
T PF05444_consen 1 YSCDSCEDPNCTDPDPSTS------ATEECPQQDDQCYTRFDD---DGTTI-RGCLSDLPAE---EQSSCSAGN---DAN 64 (152)
T ss_pred CCccCCcCCCCCCCCCCce------ecccCCCCCCCCEEEEeC---CCceE-cCchhhcchh---hcccccCCC---CCc
Confidence 6899999999933221111 1234644 38777753 22256 6999764311 123464321 125
Q ss_pred E-ecCCCCCCCCC
Q psy15591 126 C-FCEEDMCNAAM 137 (159)
Q Consensus 126 C-~C~~D~CN~A~ 137 (159)
| .|++|+||.+.
T Consensus 65 C~~C~~~~CN~~~ 77 (152)
T PF05444_consen 65 CVTCSGDGCNNAV 77 (152)
T ss_pred ccCcCCCCCCCcc
Confidence 6 57777777743
No 9
>KOG3653|consensus
Probab=91.40 E-value=2.3 Score=39.30 Aligned_cols=58 Identities=28% Similarity=0.548 Sum_probs=37.5
Q ss_pred CceEEEEecCCceeEEEeccccC--ccccceeccCccceeC---CC-CeEEEecCCCCCCCCCCC
Q psy15591 81 CCVKMVRNSRTQFESIRRTCTSQ--LQINLFMVDHVCMMEG---TG-TGHMCFCEEDMCNAAMST 139 (159)
Q Consensus 81 ~C~Kivq~~~g~~~ivRR~C~~~--~~~~~~~~d~~C~~~~---~~-~~~~C~C~~D~CN~A~~l 139 (159)
.|.-+-....|..+++.-+|... ++.+-+ +...|.... .+ +.++|-|.+|.||.-.++
T Consensus 68 ~C~avW~~t~~~~~~v~qGC~~~~~D~~~c~-~~~eCv~s~~~~~g~t~~~CcCs~~~CN~n~s~ 131 (534)
T KOG3653|consen 68 HCFAVWNKTSGTIEVVKQGCWSHITDDINCE-DSSECVVSAEPPPGQTLYFCCCSTDFCNANFSH 131 (534)
T ss_pred ceEEEeeccCCceeEEeecCccccCCccccc-cccccccCCCCCCCCeEEEEecCCCcccCCccc
Confidence 58878777778888888899853 222211 123465421 22 378999999999986543
No 10
>PF02988 PLA2_inh: Phospholipase A2 inhibitor; InterPro: IPR004126 Proteins in this entry inhibit basic phospholipase A2 isozymes in snake's venom [, ].; GO: 0004859 phospholipase inhibitor activity, 0005576 extracellular region
Probab=77.61 E-value=10 Score=26.92 Aligned_cols=66 Identities=27% Similarity=0.652 Sum_probs=38.4
Q ss_pred eEEEcCCCCCCCCCCCCCCCCCCCCCCCCccCc---cCceEEEEecC--C-ceeEEEeccccCccccceeccCccceeC-
Q psy15591 47 YCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCN---GCCVKMVRNSR--T-QFESIRRTCTSQLQINLFMVDHVCMMEG- 119 (159)
Q Consensus 47 ~CY~CnS~~dp~C~Dpf~~~~~~~d~~p~~~c~---~~C~Kivq~~~--g-~~~ivRR~C~~~~~~~~~~~d~~C~~~~- 119 (159)
.|..|++.. +.|.-++ ..|. ..|.+++.++- | ..+.+-+.|..... |....
T Consensus 2 ~CEvC~~~G-~~C~G~~------------~tC~~~eDtC~~~~~E~~~~~~s~~~~~K~C~~S~~---------C~~~~~ 59 (83)
T PF02988_consen 2 SCEVCHGSG-KDCSGKM------------KTCEDGEDTCVTVVTEVSSAGVSFRTTHKGCFSSSD---------CHLGYV 59 (83)
T ss_pred CcceecCcC-CCCCCCe------------eEcCCCCCEEEEEEEEeccCCeEEEEEEecccCccc---------cCCCCE
Confidence 478888753 6776543 2342 24999987753 2 23233258986532 65421
Q ss_pred ---CCC------eEEEecCCCCCCC
Q psy15591 120 ---TGT------GHMCFCEEDMCNA 135 (159)
Q Consensus 120 ---~~~------~~~C~C~~D~CN~ 135 (159)
.++ ..+| |++|+||.
T Consensus 60 ~~n~g~~~y~rs~~~C-C~gd~C~~ 83 (83)
T PF02988_consen 60 STNMGHGDYMRSRIHC-CQGDGCNT 83 (83)
T ss_pred EEecCCCCEEEeeeee-ECCCccCC
Confidence 121 1478 99999994
No 11
>KOG2052|consensus
Probab=77.35 E-value=10 Score=34.92 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=31.1
Q ss_pred cCceEEEEe-cCCceeEEEeccccCccccceeccCccceeC-CCCeEEEecCCCCCCC
Q psy15591 80 GCCVKMVRN-SRTQFESIRRTCTSQLQINLFMVDHVCMMEG-TGTGHMCFCEEDMCNA 135 (159)
Q Consensus 80 ~~C~Kivq~-~~g~~~ivRR~C~~~~~~~~~~~d~~C~~~~-~~~~~~C~C~~D~CN~ 135 (159)
+.|-+.+.+ ..|+.... |+|....+.........|...+ ..+..+| |++|+||.
T Consensus 54 g~C~~s~~~~~~g~~~~~-~gC~~~~~~~~~~~~~~~~~~s~~~~~~~C-C~~d~CN~ 109 (513)
T KOG2052|consen 54 GACFVSVEENDDGKEQHH-RGCMTLEESLPRCNPFKCAHSSPDFRNIEC-CYGDYCNN 109 (513)
T ss_pred CeEEEEEEecCCCceEEE-ecccccccccccCCCccccCCCCCceEEEe-cCcccccc
Confidence 579999885 45665667 5999764321100111222211 1244688 89999995
No 12
>PF01684 ET: ET module; InterPro: IPR002603 The proteins in this entry have no known function, and are found in Caenorhabditis elegans and in Caenorhabditis briggsae. Each repeat contains 8-10 conserved cysteines that probably form 4-5 disulphide bridges. By inspection of the conservation of cysteines it looks like cysteines 1, 2, 3, 4, 9 and 10 are always present and that sometimes the pair 5 and 8 or the pair 6 and 7 are missing. This suggests that cysteines 5/8 and 6/7 make disulphide bridges.
Probab=75.44 E-value=6.3 Score=27.78 Aligned_cols=60 Identities=22% Similarity=0.464 Sum_probs=39.4
Q ss_pred ccCccCceEEEE-ecCCceeEEEeccccCcc-ccceeccCccceeCCC-CeEEEecC-CCCCCCCC
Q psy15591 76 MTCNGCCVKMVR-NSRTQFESIRRTCTSQLQ-INLFMVDHVCMMEGTG-TGHMCFCE-EDMCNAAM 137 (159)
Q Consensus 76 ~~c~~~C~Kivq-~~~g~~~ivRR~C~~~~~-~~~~~~d~~C~~~~~~-~~~~C~C~-~D~CN~A~ 137 (159)
+.|.|.|.++.. .++|....+= .|..... ..++ .++.|..-..+ .+..|-|+ .|.||...
T Consensus 18 ~~C~G~CaSvs~~~~ng~~~t~y-~C~P~~vC~~L~-l~n~C~~i~~~~~vtgCCC~~~dnC~~p~ 81 (82)
T PF01684_consen 18 VACQGQCASVSITTYNGHNVTLY-TCDPTSVCRSLN-LNNSCNTIEGGREVTGCCCNNSDNCNDPT 81 (82)
T ss_pred EEeCCEEEEEEEEeECCceEEEE-EechHHHHhhhc-ccCcccccCCCCcEEEEECCCCccccCCC
Confidence 358899999988 7888766663 7876533 1111 13457653333 47788798 99999753
No 13
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=41.99 E-value=50 Score=24.21 Aligned_cols=32 Identities=9% Similarity=0.185 Sum_probs=14.6
Q ss_pred eEEEecCCCCCCCCCCCchhHHHHHHHHHHHHHh
Q psy15591 123 GHMCFCEEDMCNAAMSTETSHFLLLFLVTLSMAL 156 (159)
Q Consensus 123 ~~~C~C~~D~CN~A~~l~~~~~l~~l~l~~~~a~ 156 (159)
+.|+ ..... |+........+.+++.++|+++|
T Consensus 55 I~Y~-~P~~~-~~~~~~~~~~~~~~~vl~L~~~I 86 (104)
T PF01307_consen 55 INYN-SPNKL-SSSSSSSSKFQPFLLVLLLILLI 86 (104)
T ss_pred EEeC-CCCCC-CcccCCCccHHHHHHHHHHHHHH
Confidence 4554 33344 44444433444444444444444
No 14
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=41.05 E-value=23 Score=24.10 Aligned_cols=16 Identities=13% Similarity=0.511 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
+|.++|++++++++++
T Consensus 5 g~~elliIlvI~lllF 20 (67)
T PRK03625 5 SITKLLVVAALVVLLF 20 (67)
T ss_pred cHHHHHHHHHHHHHHc
Confidence 5667777777777654
No 15
>PF08917 ecTbetaR2: Transforming growth factor beta receptor 2 ectodomain; InterPro: IPR015013 The Transforming growth factor beta receptor 2 ectodomain is a compact fold consisting of nine beta-strands and a single helix stabilised by a network of six intra strand disulphide bonds. The folding topology includes a central five-stranded antiparallel beta-sheet, eight-residues long at its centre, covered by a second layer consisting of two segments of two-stranded antiparallel beta-sheets (beta1-beta4, beta3-beta9) []. ; GO: 0005026 transforming growth factor beta receptor activity, type II, 0005524 ATP binding, 0046872 metal ion binding, 0006468 protein phosphorylation, 0016020 membrane; PDB: 1KTZ_B 3KFD_E 1M9Z_A 2PJY_B 1PLO_A 1KS6_A.
Probab=39.92 E-value=23 Score=26.71 Aligned_cols=56 Identities=23% Similarity=0.523 Sum_probs=35.7
Q ss_pred CceEEEEecCCceeEEEeccccCccc--ccee---ccCccceeC----CCCeEEEecCCCCCCCCC
Q psy15591 81 CCVKMVRNSRTQFESIRRTCTSQLQI--NLFM---VDHVCMMEG----TGTGHMCFCEEDMCNAAM 137 (159)
Q Consensus 81 ~C~Kivq~~~g~~~ivRR~C~~~~~~--~~~~---~d~~C~~~~----~~~~~~C~C~~D~CN~A~ 137 (159)
.|+-|--+.++...+- --|.-.... |..- ....|.+.. ++..+.|.|.+|.||.--
T Consensus 37 VCvAiWRk~~~nitie-TlCHdP~~~l~G~~l~d~ns~~C~Mkek~~~g~~~~~CsC~~eECNd~l 101 (118)
T PF08917_consen 37 VCVAIWRKNDENITIE-TLCHDPKLPLHGFMLEDYNSSKCIMKEKKSEGGTFFMCSCSGEECNDKL 101 (118)
T ss_dssp EEEEEEEEETTEEEEE-EEEE-TTSBCTTCB-TTTTCSSEEEEEEEETTCEEEEEEESSTTCCCEE
T ss_pred EEEEEEEECCCCeEEE-EeecCCCCcccceEecCCCCCeeEEEeeeCCCCcEEEEecCccccCCeE
Confidence 5988887777766655 378855331 1100 235798742 356789999999999643
No 16
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=37.41 E-value=30 Score=25.04 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHHh
Q psy15591 17 PGWSQMLTIPVLLLFFI 33 (159)
Q Consensus 17 ~~~~~~l~~~v~~~~~~ 33 (159)
.+|.++|++++++|++|
T Consensus 4 ~g~~elliIlvIvlllF 20 (92)
T PRK00442 4 FDWKHWIVILVVVVLVF 20 (92)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 34556666666655554
No 17
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=36.28 E-value=28 Score=24.72 Aligned_cols=17 Identities=41% Similarity=0.806 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHh
Q psy15591 17 PGWSQMLTIPVLLLFFI 33 (159)
Q Consensus 17 ~~~~~~l~~~v~~~~~~ 33 (159)
.+|.++|+++|++++++
T Consensus 4 ig~~elliIlvV~lllf 20 (94)
T COG1826 4 IGWSELLIILVVALLVF 20 (94)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 57788888888777665
No 18
>PRK00404 tatB sec-independent translocase; Provisional
Probab=35.31 E-value=28 Score=27.07 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHhh
Q psy15591 18 GWSQMLTIPVLLLFFIS 34 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~~ 34 (159)
||+++|+|+|+.|++|-
T Consensus 5 G~~ELlvI~VVaLlV~G 21 (141)
T PRK00404 5 SFSELLLVGLVALLVLG 21 (141)
T ss_pred cHHHHHHHHHHHHHhcC
Confidence 67888888888887653
No 19
>PRK00708 sec-independent translocase; Provisional
Probab=34.77 E-value=27 Score=28.84 Aligned_cols=16 Identities=38% Similarity=1.057 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
||.++|+|+|+.|++|
T Consensus 5 G~~ELlvI~vVaLvV~ 20 (209)
T PRK00708 5 GWSELLVIAIVLIVVV 20 (209)
T ss_pred cHHHHHHHHHHHHhhc
Confidence 6778888888888655
No 20
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=31.58 E-value=63 Score=20.92 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=11.7
Q ss_pred ccCchhH-------HHHHHHHHHHHHHhhhc
Q psy15591 13 RSRWPGW-------SQMLTIPVLLLFFISEA 36 (159)
Q Consensus 13 ~~~~~~~-------~~~l~~~v~~~~~~~~~ 36 (159)
-.+-|+| +-.|+.++++++.++..
T Consensus 11 ~~~~~~WlvtyaDlmTLLl~fFVlL~s~s~~ 41 (58)
T PF13677_consen 11 EEGSPRWLVTYADLMTLLLAFFVLLFSMSSV 41 (58)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555566 33444444555444443
No 21
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=31.42 E-value=39 Score=24.26 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
||.++|+++|+.|+++
T Consensus 7 G~~ElliIlvVaLlvf 22 (90)
T PRK14857 7 GLPEMAVILVIALLVF 22 (90)
T ss_pred cHHHHHHHHHHHHHHc
Confidence 4556777776666544
No 22
>PRK03100 sec-independent translocase; Provisional
Probab=29.93 E-value=38 Score=26.10 Aligned_cols=16 Identities=38% Similarity=0.789 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
||.++|+|+|+.|++|
T Consensus 6 G~~EllvI~vVaLvv~ 21 (136)
T PRK03100 6 GWGEMLVLVVAGLVIL 21 (136)
T ss_pred cHHHHHHHHHHHHhhc
Confidence 6778888888877655
No 23
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=29.83 E-value=47 Score=22.27 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
|+.++|++++++|+++
T Consensus 5 G~~ElliIlvv~Llvf 20 (63)
T PRK14859 5 GMPELIVILVIVLIVF 20 (63)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 5667777777777654
No 24
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=29.80 E-value=46 Score=23.96 Aligned_cols=17 Identities=24% Similarity=0.465 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHhh
Q psy15591 18 GWSQMLTIPVLLLFFIS 34 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~~ 34 (159)
|+.++|++++|+|++|-
T Consensus 5 G~~eLlIIlvIvLLlFG 21 (89)
T PRK03554 5 SIWQLLIIAVIVVLLFG 21 (89)
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 45566666666665543
No 25
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=29.66 E-value=43 Score=22.55 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHhh
Q psy15591 18 GWSQMLTIPVLLLFFIS 34 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~~ 34 (159)
+|.++|++++++++++-
T Consensus 5 G~~ElliI~vIalllfG 21 (64)
T PRK14860 5 GMPELIVILVIALVVFG 21 (64)
T ss_pred cHHHHHHHHHHHHhhcC
Confidence 56677777777776553
No 26
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=29.43 E-value=49 Score=21.14 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
||.++++++++.++++
T Consensus 2 g~~El~iI~vvalllf 17 (53)
T PF02416_consen 2 GFPELLIILVVALLLF 17 (53)
T ss_dssp -HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHh
Confidence 4567777777666554
No 27
>PRK08944 motB flagellar motor protein MotB; Reviewed
Probab=29.37 E-value=55 Score=28.14 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=19.0
Q ss_pred hhccCcccccCchhHHH-------HHHHHHHHHHHhhh
Q psy15591 5 AQRKTPQVRSRWPGWSQ-------MLTIPVLLLFFISE 35 (159)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-------~l~~~v~~~~~~~~ 35 (159)
+.+|.+--..+.|+||- +|+.+++||+.++.
T Consensus 3 ~~~~~~~~~~g~~~Wm~TfADlmTLLm~FFVlL~S~S~ 40 (302)
T PRK08944 3 AEKKCKCPPPGAPAWLATFADLMSLLMCFFVLLLSFSE 40 (302)
T ss_pred cccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666789999964 45555555555543
No 28
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=29.04 E-value=42 Score=24.89 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
||.++|+|+|+.|++|
T Consensus 5 G~~ElliIlvVallvf 20 (108)
T PRK14858 5 GMPELIVILVIALIVI 20 (108)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 5567777777777654
No 29
>PRK01770 sec-independent translocase; Provisional
Probab=28.34 E-value=41 Score=26.91 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
||.++|+|+|+.|++|
T Consensus 5 G~~ELllI~vVaLlV~ 20 (171)
T PRK01770 5 GFSELLLVFVIGLVVL 20 (171)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 5678888888877655
No 30
>PRK00182 tatB sec-independent translocase; Provisional
Probab=28.25 E-value=43 Score=26.55 Aligned_cols=17 Identities=29% Similarity=0.757 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHhh
Q psy15591 18 GWSQMLTIPVLLLFFIS 34 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~~ 34 (159)
||.++|+|+||.|++|-
T Consensus 6 G~~EllvIlvIaLlVfG 22 (160)
T PRK00182 6 GWGEILLLLIVGLIVIG 22 (160)
T ss_pred cHHHHHHHHHHHHHhcC
Confidence 67788888888777653
No 31
>PF12365 DUF3649: Protein of unknown function (DUF3649) ; InterPro: IPR022109 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length.
Probab=27.23 E-value=63 Score=18.27 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=17.1
Q ss_pred cccCchhHHHHHHHHHHHHHH
Q psy15591 12 VRSRWPGWSQMLTIPVLLLFF 32 (159)
Q Consensus 12 ~~~~~~~~~~~l~~~v~~~~~ 32 (159)
+||-|-+|.-+++...++...
T Consensus 4 ~rsa~rAW~Gll~~a~~l~~~ 24 (28)
T PF12365_consen 4 ARSAWRAWLGLLLPAALLALL 24 (28)
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 689999999988888777643
No 32
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=27.08 E-value=55 Score=23.09 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
++.++|+++++++++|
T Consensus 5 g~~elliIlvivlllF 20 (81)
T PRK04598 5 SIWQLLIIAVIVVLLF 20 (81)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 4446666666555544
No 33
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=27.02 E-value=54 Score=21.78 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHh
Q psy15591 17 PGWSQMLTIPVLLLFFI 33 (159)
Q Consensus 17 ~~~~~~l~~~v~~~~~~ 33 (159)
.||.++++++++.++++
T Consensus 5 ig~~ElliI~vi~llvf 21 (61)
T PRK14861 5 IGFPGLILILVVALIIF 21 (61)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 36778888888877655
No 34
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=26.32 E-value=53 Score=23.76 Aligned_cols=16 Identities=6% Similarity=0.177 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
|+.++++|++++|++|
T Consensus 5 G~~ElliIlvi~LllF 20 (92)
T PRK00575 5 SPWHWAILAVVVILLF 20 (92)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 4557777777666655
No 35
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=26.01 E-value=58 Score=23.16 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
||.++|+++++++++|
T Consensus 4 g~~ElliI~vI~lllF 19 (84)
T PRK00191 4 GPWEIGIIVLLIIVLF 19 (84)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 4557777777666554
No 36
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=25.72 E-value=68 Score=23.09 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=18.5
Q ss_pred cCchhHHHHHHHHHHHHHHhhhcc
Q psy15591 14 SRWPGWSQMLTIPVLLLFFISEAS 37 (159)
Q Consensus 14 ~~~~~~~~~l~~~v~~~~~~~~~~ 37 (159)
.+.|.|--+|+++++++.++++--
T Consensus 2 N~yp~WKyllil~vl~~~~lyALP 25 (101)
T PF13721_consen 2 NRYPLWKYLLILVVLLLGALYALP 25 (101)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhh
Confidence 367889888888888887777644
No 37
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=25.12 E-value=62 Score=23.09 Aligned_cols=16 Identities=13% Similarity=0.555 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
++.++|+++++++++|
T Consensus 5 G~~ELLIIlvIvLLLF 20 (85)
T PRK01614 5 SITKLLVVGILIVLLF 20 (85)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 4456666666666554
No 38
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=25.08 E-value=63 Score=20.76 Aligned_cols=16 Identities=13% Similarity=0.561 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
++.++++++++.++++
T Consensus 4 g~~elliI~vi~llvF 19 (51)
T PRK01470 4 SFSHLLIVLLIIFVLF 19 (51)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 3456666666666544
No 39
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=24.55 E-value=49 Score=22.97 Aligned_cols=16 Identities=38% Similarity=0.727 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
||.++|+++|+.++++
T Consensus 4 g~~EllvI~vvallv~ 19 (80)
T TIGR01410 4 GFSELLLIAVVALVVL 19 (80)
T ss_pred cHHHHHHHHHHHHheE
Confidence 5678888888877654
No 40
>PRK04654 sec-independent translocase; Provisional
Probab=24.45 E-value=54 Score=27.21 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
||.++|+|+|+.|++|
T Consensus 5 G~~ELLlI~VVALlV~ 20 (214)
T PRK04654 5 GVGELTLIAVVALVVL 20 (214)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 5667777777777655
No 41
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=23.06 E-value=74 Score=19.90 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
+|.+++.++++.++++
T Consensus 3 g~~ElliI~vi~llvf 18 (47)
T TIGR01411 3 SPPEWLIILVVILLLF 18 (47)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 4567777776666554
No 42
>PRK01919 tatB sec-independent translocase; Provisional
Probab=22.93 E-value=52 Score=26.34 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
||+++|+|.|+.|++|
T Consensus 5 G~~ElliI~VVALiV~ 20 (169)
T PRK01919 5 GLSKLALIGVVALVVI 20 (169)
T ss_pred cHHHHHHHHHHHHhee
Confidence 5667777777666544
No 43
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=22.88 E-value=75 Score=22.02 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
++.++|++++++++++
T Consensus 5 g~~elliIl~i~lllF 20 (74)
T PRK01833 5 SIWQLLIIVAIIVLLF 20 (74)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 4456666666555544
No 44
>PRK04098 sec-independent translocase; Provisional
Probab=22.74 E-value=60 Score=25.67 Aligned_cols=16 Identities=31% Similarity=0.727 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHh
Q psy15591 18 GWSQMLTIPVLLLFFI 33 (159)
Q Consensus 18 ~~~~~l~~~v~~~~~~ 33 (159)
||.++|+|+|+.+++|
T Consensus 5 G~~EllvI~vVaLlvf 20 (158)
T PRK04098 5 GFFEILVILVVAIIFL 20 (158)
T ss_pred cHHHHHHHHHHHHhhc
Confidence 5667777777777654
No 45
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=22.08 E-value=35 Score=23.67 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=17.2
Q ss_pred hhhccCcccccCchhHHHHHHHH
Q psy15591 4 SAQRKTPQVRSRWPGWSQMLTIP 26 (159)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~ 26 (159)
-.+.+....|||||-..++|..+
T Consensus 45 il~~~~~~i~SGW~~if~il~~a 67 (86)
T PF09324_consen 45 ILQSRGENIKSGWKVIFSILRAA 67 (86)
T ss_pred HHHHhHHHHHhccHHHHHHHHHH
Confidence 34566678999999888777654
No 46
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=21.06 E-value=1.1e+02 Score=22.53 Aligned_cols=6 Identities=33% Similarity=1.309 Sum_probs=2.9
Q ss_pred cCCCCC
Q psy15591 128 CEEDMC 133 (159)
Q Consensus 128 C~~D~C 133 (159)
|+...|
T Consensus 32 CTDteC 37 (103)
T PF11027_consen 32 CTDTEC 37 (103)
T ss_pred cCcchh
Confidence 444455
No 47
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=20.45 E-value=89 Score=21.89 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhh
Q psy15591 19 WSQMLTIPVLLLFFIS 34 (159)
Q Consensus 19 ~~~~l~~~v~~~~~~~ 34 (159)
+.++|+++++++++|-
T Consensus 6 ~~ellIIlvIvlllFG 21 (78)
T PRK00720 6 IWHWLIVLAVVLLLFG 21 (78)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3466666666665553
Done!