RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15591
         (159 letters)



>gnl|CDD|235264 PRK04247, PRK04247, hypothetical protein; Provisional.
          Length = 238

 Score = 31.8 bits (73), Expect = 0.11
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 22/79 (27%)

Query: 61  DPFNYTVLPKDQPPLMTCNGCCVK-MVRNSRTQFESIRRTCTSQLQINLFMVDHVCMMEG 119
           +P N+      QPP     G   +  V + R   ESIRR    +L++    V +V   + 
Sbjct: 70  EPVNW------QPP-----GSKTEAYVDDGRLVLESIRRRPKERLEVRFHEVYYVTAFDV 118

Query: 120 TG------TGHMCFCEEDM 132
                   TG     E DM
Sbjct: 119 EDYEELELTGS----EADM 133


>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome].
          Length = 555

 Score = 28.8 bits (64), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 7/42 (16%)

Query: 105 QINLFMVDHVCMMEGT-------GTGHMCFCEEDMCNAAMST 139
           ++N FMV     MEGT       GTG M + E+++   A+ T
Sbjct: 488 RLNHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQT 529


>gnl|CDD|205161 pfam12956, DUF3845, Domain of Unknown Function with PDB structure. 
           Member PDB:3GF6 has statistically significant similarity
           to TNF-like jelly roll fold may indicate an
           immunomodulatory function or a bioadhesion role.
          Length = 244

 Score = 28.0 bits (62), Expect = 1.9
 Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 17/54 (31%)

Query: 69  PKDQPPLMTCNGCCVKMVRNSRTQFESIRRTCT------------SQLQINLFM 110
           P   P +  C G   K        F+S RRT T            SQL  NLF+
Sbjct: 166 PASFPEVFMCKGGEQKF-----GTFDSFRRTWTFDITYDRSDLSFSQLYFNLFV 214


>gnl|CDD|145227 pfam01939, DUF91, Protein of unknown function DUF91.  The function
           of this prokaryotic protein is unknown.
          Length = 228

 Score = 27.8 bits (62), Expect = 2.5
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 11/61 (18%)

Query: 58  RCKDPFNYTVLPKDQPPLMTCNGCCVKMVRNSRTQFESIRRTCTSQLQINLFMVDHVCMM 117
           R ++P N+      QPP     G  +  V        SIRR    +L++ +  V HV + 
Sbjct: 44  RKREPVNW------QPP-----GSWLTEVSGGENSLISIRRKPGERLEVEIEEVYHVSVF 92

Query: 118 E 118
            
Sbjct: 93  L 93


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.133    0.438 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,285,465
Number of extensions: 576331
Number of successful extensions: 647
Number of sequences better than 10.0: 1
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 18
Length of query: 159
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 70
Effective length of database: 6,990,096
Effective search space: 489306720
Effective search space used: 489306720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.2 bits)