RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15591
         (159 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.0 bits (67), Expect = 0.41
 Identities = 16/107 (14%), Positives = 37/107 (34%), Gaps = 37/107 (34%)

Query: 16  WPGWSQMLTIPVLLLFFISEASAQECQTRQIYCYEC-------DSWKDHRCKDPFNYTVL 68
           W  +   +   + +LFFI       C   + Y           DS  ++    P   +  
Sbjct: 289 WESFFVSVRKAITVLFFI----GVRCY--EAYPNTSLPPSILEDSL-ENNEGVP---S-- 336

Query: 69  PKDQPPLMTCNGCCVKMVRNSRTQFES-IRRTCT-----SQLQINLF 109
                P+++ +         ++ Q +  + +T +      Q++I+L 
Sbjct: 337 -----PMLSISNL-------TQEQVQDYVNKTNSHLPAGKQVEISLV 371


>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase,
           soybean lipoxygenase-B, fatty acid biosynthesis, lipid
           synthesis; 2.4A {Glycine max}
          Length = 853

 Score = 28.3 bits (62), Expect = 1.4
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 6/52 (11%)

Query: 31  FFISEASAQECQTRQIYCYECDSWKDHRCKDPF------NYTVLPKDQPPLM 76
           F++     ++        + C+SW  +            N T LP + P  +
Sbjct: 121 FYLKSLILEDIPNHGTIHFICNSWVYNSKHYKTDRIFFANNTYLPSETPAPL 172


>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR
           riboflavin synthase, luminescence, luminescent protein;
           HET: RBF; 2.50A {Photobacterium leiognathi}
          Length = 186

 Score = 27.1 bits (61), Expect = 2.5
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 9/40 (22%)

Query: 78  CNGCCVKMVRNSRTQF-----ESIRRTCTSQLQ----INL 108
            NGC   +VR           +++  T    L+    +NL
Sbjct: 44  VNGCSNTVVRILGDMVYFDIDQALGTTTFDGLKEGDQVNL 83


>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin
           synthase, luminescent protein; HET: RBF; 1.42A
           {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A*
          Length = 190

 Score = 26.7 bits (60), Expect = 2.9
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 9/40 (22%)

Query: 78  CNGCCVKMVRNSRTQF-----ESIRRTCTSQLQ----INL 108
            NGC + +VR S         ++I  T   +L+    +NL
Sbjct: 44  VNGCSLTVVRISGDVVYFDIDQAINTTTFRELEVGNKVNL 83


>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
           genomics, protein structure initiative, PSI-2; HET: MSE;
           1.50A {Novosphingobium aromaticivorans}
          Length = 285

 Score = 27.0 bits (60), Expect = 3.0
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 5/35 (14%)

Query: 15  RWPGWSQMLTIPVLLL-----FFISEASAQECQTR 44
            WP +  + T P+L+L       +S  +A +  +R
Sbjct: 218 MWPLFDALATRPLLVLRGETSDILSAQTAAKMASR 252


>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding,
           oxidoreductase, oxylipin biosynthesis, soybean
           lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine
           max}
          Length = 864

 Score = 27.2 bits (59), Expect = 3.4
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 6/50 (12%)

Query: 31  FFISEASAQECQTRQIYCYECDSW----KDHRCKDPF--NYTVLPKDQPP 74
           FF+     ++        + C+SW    + ++    F  N T LP   P 
Sbjct: 133 FFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDTYLPSATPA 182


>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids,
           oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1
           b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A
           1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A*
           1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ...
          Length = 839

 Score = 26.7 bits (58), Expect = 4.2
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 31  FFISEASAQECQTRQIYCYECDSW----KDHRCKDPF--NYTVLPKDQPP 74
           FF+   + +    +    + C+SW    K ++    F  N+T +P + P 
Sbjct: 107 FFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPA 156


>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase,
            glutaminase, thioester intermediate, ligas; HET: ADP;
            1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A*
            3umm_A*
          Length = 1303

 Score = 25.8 bits (56), Expect = 9.9
 Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 31/86 (36%)

Query: 78   CNGC---------------CVKMVRNSRTQFESIRRTCTSQLQIN--LFMVDHVCMMEGT 120
            CNGC                 + VRN   +FE+  R    ++  +  L +      M G+
Sbjct: 1143 CNGCQMMSNLRELIPGSELWPRFVRNHSDRFEA--RFSLVEVTQSPSLLLQG----MVGS 1196

Query: 121  --------GTGHMCFCEEDMCNAAMS 138
                    G G +   ++    A  S
Sbjct: 1197 QMPIAVSHGEGRVEVRDDAHLAALES 1222


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.133    0.438 

Gapped
Lambda     K      H
   0.267   0.0482    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,230,789
Number of extensions: 111319
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 38
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.8 bits)