RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15591
         (159 letters)



>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS)
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 194

 Score = 27.3 bits (59), Expect = 0.74
 Identities = 12/90 (13%), Positives = 19/90 (21%), Gaps = 3/90 (3%)

Query: 47  YCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNGCCVKMVRNSRTQFESIRRTCTSQLQI 106
              E    + +   + +       D              +    T  E            
Sbjct: 45  VHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLD 104

Query: 107 NLFMV---DHVCMMEGTGTGHMCFCEEDMC 133
              +V   DHV    GTG  H      +  
Sbjct: 105 RESLVINGDHVTTDAGTGCVHTAPGHGEDD 134


>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 88

 Score = 26.0 bits (56), Expect = 1.0
 Identities = 10/45 (22%), Positives = 16/45 (35%)

Query: 46 IYCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNGCCVKMVRNSR 90
          + C EC +     C  P        D   +  C  C  +M R ++
Sbjct: 34 VECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQ 78


>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 110

 Score = 26.1 bits (57), Expect = 1.3
 Identities = 3/64 (4%), Positives = 17/64 (26%), Gaps = 6/64 (9%)

Query: 50  ECDSWKDHRCKDPFNYTVLPKDQPPLMTCNGCCVKMVRNSRTQF------ESIRRTCTSQ 103
           +     D   +    + +        +  +G  + +     + F       +  +   ++
Sbjct: 22  QDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSKVIMAK 81

Query: 104 LQIN 107
             + 
Sbjct: 82  KNVG 85


>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
           L-like {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 104

 Score = 24.0 bits (51), Expect = 6.2
 Identities = 5/54 (9%), Positives = 13/54 (24%)

Query: 103 QLQINLFMVDHVCMMEGTGTGHMCFCEEDMCNAAMSTETSHFLLLFLVTLSMAL 156
           +       + +V MM       + F   D     ++      + +         
Sbjct: 34  EALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87


>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 192

 Score = 24.3 bits (51), Expect = 6.6
 Identities = 12/129 (9%), Positives = 38/129 (29%), Gaps = 1/129 (0%)

Query: 30  LFFISEASAQECQTRQIYCYECDSWKDHRCKDPFNYTVLPKDQPPLMTCNGCCVKMVRNS 89
           +F I    +               +  +   +     +  +D    ++ +G    +V  S
Sbjct: 43  IFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNIS 102

Query: 90  RTQFESIRRTCTSQLQINLFMVDHVCMMEGTGTGHMCFCEEDMCNAA-MSTETSHFLLLF 148
           +   +   +      + +  +     ++           +E +   A + T      ++F
Sbjct: 103 KKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKMKQERDEILSQLAPLGTMFELTAMIF 162

Query: 149 LVTLSMALL 157
           L  L   ++
Sbjct: 163 LDALVAEIM 171


>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 275

 Score = 23.9 bits (50), Expect = 9.9
 Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 2/94 (2%)

Query: 52  DSWKDHRCKDPFNYTVLPKDQPPLMTCNGC-CVKMVRNSRTQFESIRRTCTSQLQINLFM 110
            SW D R  D  NY  + ++Q     C  C           +    R+       +++  
Sbjct: 36  KSW-DWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQN 94

Query: 111 VDHVCMMEGTGTGHMCFCEEDMCNAAMSTETSHF 144
           V           G+     +      +  ET + 
Sbjct: 95  VIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNN 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.133    0.438 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 574,311
Number of extensions: 24322
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 22
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.0 bits)