BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15592
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 230 bits (586), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 128/299 (42%), Positives = 181/299 (60%), Gaps = 29/299 (9%)
Query: 7 FLTGSQ---EEFYSPSLNKKCRNS-----SLR--------WRDPNLTEVISFLSNPNNVI 50
F+ G + +++Y L + R S SLR WR P L EVI+ L + +
Sbjct: 5 FMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAV 64
Query: 51 KANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQND 110
K+NAAAYLQHLCY +D K R L GIP LV LL H +V ACGAL+N+S+GR D
Sbjct: 65 KSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124
Query: 111 ENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHI 170
NK AIKN G+P L+ LLRK D ++ E++TG LWNLSS + +K I+D L + + +
Sbjct: 125 -NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEV 183
Query: 171 IIPHSGWDPVSAGETC------WSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLY 224
IIPHSGW+ E C W ++ NT+G LRN SS AR+KLREC+GL+D+L++
Sbjct: 184 IIPHSGWE-REPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIF 242
Query: 225 VVKSAIEKSNIGNKSVENCVCILRNLSFRCQEVEDPNYDKH----PVVSQSRTSPQAKG 279
+V++ I + + +K VENCVC+LRNLS++ E P +++ P V+ + + A+G
Sbjct: 243 IVQAEIGQKDSDSKLVENCVCLLRNLSYQVHR-EIPQAERYQEAAPNVANNTGTSPARG 300
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 15/80 (18%)
Query: 49 VIKANAAAYLQHLC--------YMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGAL 100
+++A+A A +Q+LC Y+ + R + + LL +E V + A GAL
Sbjct: 325 ILEASAGA-IQNLCAGRWTYGRYI----RSALRQEKALSAIADLLTNEHERVVKAASGAL 379
Query: 101 RNLSYGRQNDE--NKRAIKN 118
RNL+ +N E K AI N
Sbjct: 380 RNLAVDARNKELIGKHAIPN 399
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 164 bits (414), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 137/219 (62%), Gaps = 6/219 (2%)
Query: 38 EVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNAC 97
+ + +LS+ + +A A Y+QH C+ D+ KQ+ LGGI LV LL + +V + A
Sbjct: 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65
Query: 98 GALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKS 157
GALRNL + ++ NK + GI ++LLR+T +AE+++ +TG+LWNLSS ++LK+
Sbjct: 66 GALRNLVF--RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 158 IIDDGLQVVVNHIIIPHSGW---DPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRE 214
+I D L V+ + +IIP SGW + + E +F N +G LRN SSA + R+ +R
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRN 182
Query: 215 CEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFR 253
GLIDSL+ V++ + S +KSVENC+C+L NLS+R
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR 221
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 77 GIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE 136
G+P + +LL + DV R+ L N+S PLL ++ E
Sbjct: 332 GLPQIARLLQSGNSDVVRSGASLLSNMSRH----------------PLLHRVMGNQVFPE 375
Query: 137 VKELVTGVLWNLSSCEDLKKS 157
V L+T N S+ ED+ S
Sbjct: 376 VTRLLTSHTGNTSNSEDILSS 396
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of
Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant
Length = 233
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 126/205 (61%), Gaps = 5/205 (2%)
Query: 54 AAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENK 113
AA ++QH C+ +++ L GI L++LL ++ DV R CGALRNL + ++++NK
Sbjct: 30 AATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF--EDNDNK 87
Query: 114 RAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIP 173
+ G+P L+ +L++T D E K+ +TG+LWNLSS + LK +I + L + +IIIP
Sbjct: 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIP 147
Query: 174 HSGW---DPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAI 230
SGW D A IF N +G LRN SSAG RK +R C+GLIDSL++ V+ I
Sbjct: 148 FSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTI 207
Query: 231 EKSNIGNKSVENCVCILRNLSFRCQ 255
+K+ ENCVCIL NLS++ +
Sbjct: 208 ADYQPDDKATENCVCILHNLSYQLE 232
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACG 98
++ L++ ++ ++ AA L ++ D + GG+ LVKLL +V + A
Sbjct: 49 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 108
Query: 99 ALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLK-KS 157
AL N++ G DE +AI +AGG+ +L+ LL T D+EV++ L N++S D K+
Sbjct: 109 ALANIASG--PDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKA 165
Query: 158 IID-DGLQVVV 167
I+D G++V+V
Sbjct: 166 IVDAGGVEVLV 176
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 5/135 (3%)
Query: 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFR 94
++ +++ L++ ++ + AA L + + GG+ LVKLL +V +
Sbjct: 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 95 NACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDL 154
A AL N++ G DE +AI +AGG+ +L+ LL T D+EV++ L N++S D
Sbjct: 63 EAARALANIASG--PDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDE 119
Query: 155 K-KSIID-DGLQVVV 167
K+I+D G++V+V
Sbjct: 120 AIKAIVDAGGVEVLV 134
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACG 98
++ L++ ++ ++ AA L ++ D + GG+ LVKLL +V + A
Sbjct: 133 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 192
Query: 99 ALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
AL N++ G + +AI +AGG+ +L LL T D+EV++ L N+ S
Sbjct: 193 ALANIASGPTS--AIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALENIKS 241
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 36/256 (14%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ L +P + + A L +L + K R GG+ +V LL +
Sbjct: 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 154
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 155 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212
Query: 151 CEDLKKSIID-DGLQVVVNHIIIPHSG------W------DPVSAGETCWS--------- 188
C K +I++ G+Q + H+ P W D + E
Sbjct: 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 272
Query: 189 -----TIFRNTSGVLRNASSAGEYARKKLRECE-GLIDSLLYVVKSAIEKSNIGNKSVEN 242
+ +G+L N + Y + K+ C+ G I++L+ V A ++ +I E
Sbjct: 273 GSDDINVVTCAAGILSNL-TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDI----TEP 326
Query: 243 CVCILRNLSFRCQEVE 258
+C LR+L+ R QE E
Sbjct: 327 AICALRHLTSRHQEAE 342
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVK--LLGHESPDVF 93
L ++ L + + + AA L +L + NK +GGI LV+ L + D+
Sbjct: 265 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324
Query: 94 RNACGALRNLSYGRQNDE-NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
A ALR+L+ Q E + A++ G+P+++ LL + + + G++ NL+ C
Sbjct: 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102
L++P+ + N L++L D KQ+ G + LV+LLG + +V A G L N
Sbjct: 233 LTDPSQRLVQNCLWTLRNLS--DAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSN 289
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE-VKELVTGVLWNLSS----CEDLKKS 157
L+ N +NK + GGI L+ + + D E + E L +L+S E + +
Sbjct: 290 LTC--NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 347
Query: 158 I-IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN 200
+ + GL VVV ++ P S W + A T G++RN
Sbjct: 348 VRLHYGLPVVVK-LLHPPSHWPLIKA-----------TVGLIRN 379
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 63 YMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAI-KNAGG 121
Y DD + TR+ IP L KLL E V A + LS + + ++ AI ++
Sbjct: 5 YQDDA-ELATRA---IPELTKLLNDEDQVVVNKAAVMVHQLS---KKEASRHAIMRSPQM 57
Query: 122 IPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
+ ++ ++ T D E G L NLS + +I G
Sbjct: 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG 98
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 108/256 (42%), Gaps = 36/256 (14%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + +++ L +P + + +A L +L + K R GG+ +V LL +
Sbjct: 231 FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 290
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 291 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348
Query: 151 CEDLKKSIID-DGLQVVVNHIIIPHSG------W------DPVSAGETCWS--------- 188
C K +I++ G+Q + H+ P W D + E
Sbjct: 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 408
Query: 189 -----TIFRNTSGVLRNASSAGEYARKKLRECE-GLIDSLLYVVKSAIEKSNIGNKSVEN 242
+ +G+L N + Y + K+ C+ G I++L+ V A ++ +I E
Sbjct: 409 GSDDINVVTCAAGILSNL-TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDI----TEP 462
Query: 243 CVCILRNLSFRCQEVE 258
+C LR+L+ R Q+ E
Sbjct: 463 AICALRHLTSRHQDAE 478
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRN 95
+ E+ L++ + V+ AA + L + RS + +V+ + + DV
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM-QNTNDVETA 210
Query: 96 AC--GALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCED 153
C G L NLS+ R E AI +GGIP L+N+L D+ + +T + L E
Sbjct: 211 RCTSGTLHNLSHHR---EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267
Query: 154 LKKSI-IDDGLQVVV 167
K ++ + GLQ +V
Sbjct: 268 AKMAVRLAGGLQKMV 282
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVK--LLGHESPDVF 93
L ++ L + + + AA L +L + NK +GGI LV+ L + D+
Sbjct: 401 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 460
Query: 94 RNACGALRNLSYGRQNDE-NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
A ALR+L+ Q+ E + A++ G+P+++ LL + + + G++ NL+ C
Sbjct: 461 EPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 519
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102
L++P+ + N L++L D KQ+ G + LV+LLG + +V A G L N
Sbjct: 369 LTDPSQRLVQNCLWTLRNLS--DAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSN 425
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE-VKELVTGVLWNLSS----CEDLKKS 157
L+ N +NK + GGI L+ + + D E + E L +L+S E + +
Sbjct: 426 LTC--NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA 483
Query: 158 I-IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN 200
+ + GL VVV ++ P S W + + T G++RN
Sbjct: 484 VRLHYGLPVVVK-LLHPPSHW-----------PLIKATVGLIRN 515
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 36/256 (14%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ L +P + + A L +L + K R GG+ +V LL +
Sbjct: 96 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 155
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 156 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 213
Query: 151 CEDLKKSIID-DGLQVVVNHIIIPHSG------W------DPVSAGETCWS--------- 188
C K +I++ G+Q + H+ P W D + E
Sbjct: 214 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 273
Query: 189 -----TIFRNTSGVLRNASSAGEYARKKLRECE-GLIDSLLYVVKSAIEKSNIGNKSVEN 242
+ +G+L N + Y + K+ C+ G I++L+ V A ++ +I E
Sbjct: 274 GSDDINVVTCAAGILSNL-TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDI----TEP 327
Query: 243 CVCILRNLSFRCQEVE 258
+C LR+L+ R QE E
Sbjct: 328 AICALRHLTSRHQEAE 343
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 54 AAAYLQHLCYMDDPNKQKTRSLGGIPPLVK--LLGHESPDVFRNACGALRNLSYGRQNDE 111
AA L +L + NK +GGI LV+ L + D+ A ALR+L+ Q E
Sbjct: 284 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 343
Query: 112 NKR-AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
+ A++ G+P+++ LL + + + G++ NL+ C
Sbjct: 344 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 384
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102
L++P+ + N L++L D KQ+ G + LV+LLG + +V A G L N
Sbjct: 234 LTDPSQRLVQNCLWTLRNLS--DAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSN 290
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE-VKELVTGVLWNLSS----CEDLKKS 157
L+ N +NK + GGI L+ + + D E + E L +L+S E + +
Sbjct: 291 LTCN--NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 348
Query: 158 I-IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN 200
+ + GL VVV ++ P S W + A T G++RN
Sbjct: 349 VRLHYGLPVVVK-LLHPPSHWPLIKA-----------TVGLIRN 380
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 77 GIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAI-KNAGGIPLLINLLRKTADA 135
IP L KLL E V A + LS + + ++ AI ++ + ++ ++ T D
Sbjct: 16 AIPELTKLLNDEDQVVVNKAAVMVHQLS---KKEASRHAIMRSPQMVSAIVRTMQNTNDV 72
Query: 136 EVKELVTGVLWNLSSCEDLKKSIIDDG 162
E G L NLS + +I G
Sbjct: 73 ETARCTAGTLHNLSHHREGLLAIFKSG 99
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 36/256 (14%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ L +P + + A L +L + K R GG+ +V LL +
Sbjct: 101 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 160
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 161 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 218
Query: 151 CEDLKKSIID-DGLQVVVNHIIIPHSG------W------DPVSAGETCWS--------- 188
C K +I++ G+Q + H+ P W D + E
Sbjct: 219 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 278
Query: 189 -----TIFRNTSGVLRNASSAGEYARKKLRECE-GLIDSLLYVVKSAIEKSNIGNKSVEN 242
+ +G+L N + Y + K+ C+ G I++L+ V A ++ +I E
Sbjct: 279 GSDDINVVTCAAGILSNL-TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDI----TEP 332
Query: 243 CVCILRNLSFRCQEVE 258
+C LR+L+ R QE E
Sbjct: 333 AICALRHLTSRHQEAE 348
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVK--LLGHESPDVF 93
L ++ L + + + AA L +L + NK +GGI LV+ L + D+
Sbjct: 271 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 330
Query: 94 RNACGALRNLSYGRQNDENKR-AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
A ALR+L+ Q E + A++ G+P+++ LL + + + G++ NL+ C
Sbjct: 331 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 389
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102
L++P+ + N L++L D KQ+ G + LV+LLG + +V A G L N
Sbjct: 239 LTDPSQRLVQNCLWTLRNLS--DAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSN 295
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE-VKELVTGVLWNLSS----CEDLKKS 157
L+ N +NK + GGI L+ + + D E + E L +L+S E + +
Sbjct: 296 LTC--NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 353
Query: 158 I-IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN 200
+ + GL VVV ++ P S W + A T G++RN
Sbjct: 354 VRLHYGLPVVVK-LLHPPSHWPLIKA-----------TVGLIRN 385
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 63 YMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAI-KNAGG 121
Y DD + TR+ IP L KLL E V A + LS + + ++ AI ++
Sbjct: 11 YQDDA-ELATRA---IPELTKLLNDEDQVVVNKAAVMVHQLS---KKEASRHAIMRSPQM 63
Query: 122 IPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
+ ++ ++ T D E G L NLS + +I G
Sbjct: 64 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG 104
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 36/256 (14%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ L +P + + A L +L + K R GG+ +V LL +
Sbjct: 100 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 159
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 160 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 217
Query: 151 CEDLKKSIID-DGLQVVVNHIIIPHSG------W------DPVSAGETCWS--------- 188
C K +I++ G+Q + H+ P W D + E
Sbjct: 218 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 277
Query: 189 -----TIFRNTSGVLRNASSAGEYARKKLRECE-GLIDSLLYVVKSAIEKSNIGNKSVEN 242
+ +G+L N + Y + K+ C+ G I++L+ V A ++ +I E
Sbjct: 278 GSDDINVVTCAAGILSNL-TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDI----TEP 331
Query: 243 CVCILRNLSFRCQEVE 258
+C LR+L+ R QE E
Sbjct: 332 AICALRHLTSRHQEAE 347
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVK--LLGHESPDVF 93
L ++ L + + + AA L +L + NK +GGI LV+ L + D+
Sbjct: 270 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 329
Query: 94 RNACGALRNLSYGRQNDENKR-AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
A ALR+L+ Q E + A++ G+P+++ LL + + + G++ NL+ C
Sbjct: 330 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 388
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102
L++P+ + N L++L D KQ+ G + LV+LLG + +V A G L N
Sbjct: 238 LTDPSQRLVQNCLWTLRNLS--DAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSN 294
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE-VKELVTGVLWNLSS----CEDLKKS 157
L+ N +NK + GGI L+ + + D E + E L +L+S E + +
Sbjct: 295 LTC--NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 352
Query: 158 I-IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN 200
+ + GL VVV ++ P S W + A T G++RN
Sbjct: 353 VRLHYGLPVVVK-LLHPPSHWPLIKA-----------TVGLIRN 384
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 63 YMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAI-KNAGG 121
Y DD + TR+ IP L KLL E V A + LS + + ++ AI ++
Sbjct: 10 YQDDA-ELATRA---IPELTKLLNDEDQVVVNKAAVMVHQLS---KKEASRHAIMRSPQM 62
Query: 122 IPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
+ ++ ++ T D E G L NLS + +I G
Sbjct: 63 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG 103
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 36/256 (14%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ L +P + + A L +L + K R GG+ +V LL +
Sbjct: 99 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 158
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 159 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 216
Query: 151 CEDLKKSIID-DGLQVVVNHIIIPHSG------W------DPVSAGETCWS--------- 188
C K +I++ G+Q + H+ P W D + E
Sbjct: 217 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 276
Query: 189 -----TIFRNTSGVLRNASSAGEYARKKLRECE-GLIDSLLYVVKSAIEKSNIGNKSVEN 242
+ +G+L N + Y + K+ C+ G I++L+ V A ++ +I E
Sbjct: 277 GSDDINVVTCAAGILSNL-TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDI----TEP 330
Query: 243 CVCILRNLSFRCQEVE 258
+C LR+L+ R QE E
Sbjct: 331 AICALRHLTSRHQEAE 346
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVK--LLGHESPDVF 93
L ++ L + + + AA L +L + NK +GGI LV+ L + D+
Sbjct: 269 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 328
Query: 94 RNACGALRNLSYGRQNDENKR-AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
A ALR+L+ Q E + A++ G+P+++ LL + + + G++ NL+ C
Sbjct: 329 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 387
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102
L++P+ + N L++L D KQ+ G + LV+LLG + +V A G L N
Sbjct: 237 LTDPSQRLVQNCLWTLRNLS--DAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSN 293
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE-VKELVTGVLWNLSS----CEDLKKS 157
L+ N +NK + GGI L+ + + D E + E L +L+S E + +
Sbjct: 294 LTC--NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 351
Query: 158 I-IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN 200
+ + GL VVV ++ P S W + A T G++RN
Sbjct: 352 VRLHYGLPVVVK-LLHPPSHWPLIKA-----------TVGLIRN 383
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 63 YMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAI-KNAGG 121
Y DD + TR+ IP L KLL E V A + LS + + ++ AI ++
Sbjct: 9 YQDDA-ELATRA---IPELTKLLNDEDQVVVNKAAVMVHQLS---KKEASRHAIMRSPQM 61
Query: 122 IPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
+ ++ ++ T D E G L NLS + +I G
Sbjct: 62 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG 102
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 36/256 (14%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ L +P + + A L +L + K R GG+ +V LL +
Sbjct: 102 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 161
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 162 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 219
Query: 151 CEDLKKSIID-DGLQVVVNHIIIPHSG------W------DPVSAGETCWS--------- 188
C K +I++ G+Q + H+ P W D + E
Sbjct: 220 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 279
Query: 189 -----TIFRNTSGVLRNASSAGEYARKKLRECE-GLIDSLLYVVKSAIEKSNIGNKSVEN 242
+ +G+L N + Y + K+ C+ G I++L+ V A ++ +I E
Sbjct: 280 GSDDINVVTCAAGILSNL-TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDI----TEP 333
Query: 243 CVCILRNLSFRCQEVE 258
+C LR+L+ R QE E
Sbjct: 334 AICALRHLTSRHQEAE 349
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVK--LLGHESPDVF 93
L ++ L + + + AA L +L + NK +GGI LV+ L + D+
Sbjct: 272 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 331
Query: 94 RNACGALRNLSYGRQNDENKR-AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
A ALR+L+ Q E + A++ G+P+++ LL + + + G++ NL+ C
Sbjct: 332 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 390
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102
L++P+ + N L++L D KQ+ G + LV+LLG + +V A G L N
Sbjct: 240 LTDPSQRLVQNCLWTLRNLS--DAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSN 296
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE-VKELVTGVLWNLSS----CEDLKKS 157
L+ N +NK + GGI L+ + + D E + E L +L+S E + +
Sbjct: 297 LTC--NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 354
Query: 158 I-IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN 200
+ + GL VVV ++ P S W + A T G++RN
Sbjct: 355 VRLHYGLPVVVK-LLHPPSHWPLIKA-----------TVGLIRN 386
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 63 YMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAI-KNAGG 121
Y DD + TR+ IP L KLL E V A + LS + + ++ AI ++
Sbjct: 12 YQDDA-ELATRA---IPELTKLLNDEDQVVVNKAAVMVHQLS---KKEASRHAIMRSPQM 64
Query: 122 IPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
+ ++ ++ T D E G L NLS + +I G
Sbjct: 65 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG 105
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 36/256 (14%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ L +P + + A L +L + K R GG+ +V LL +
Sbjct: 100 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 159
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 160 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 217
Query: 151 CEDLKKSIID-DGLQVVVNHIIIPHSG------W------DPVSAGETCWS--------- 188
C K +I++ G+Q + H+ P W D + E
Sbjct: 218 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 277
Query: 189 -----TIFRNTSGVLRNASSAGEYARKKLRECE-GLIDSLLYVVKSAIEKSNIGNKSVEN 242
+ +G+L N + Y + K+ C+ G I++L+ V A ++ +I E
Sbjct: 278 GSDDINVVTCAAGILSNL-TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDI----TEP 331
Query: 243 CVCILRNLSFRCQEVE 258
+C LR+L+ R QE E
Sbjct: 332 AICALRHLTSRHQEAE 347
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVK--LLGHESPDVF 93
L ++ L + + + AA L +L + NK +GGI LV+ L + D+
Sbjct: 270 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 329
Query: 94 RNACGALRNLSYGRQNDENKR-AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
A ALR+L+ Q E + A++ G+P+++ LL + + + G++ NL+ C
Sbjct: 330 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 388
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102
L++P+ + N L++L D KQ+ G + LV+LLG + +V A G L N
Sbjct: 238 LTDPSQRLVQNCLWTLRNLS--DAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSN 294
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE-VKELVTGVLWNLSS----CEDLKKS 157
L+ N +NK + GGI L+ + + D E + E L +L+S E + +
Sbjct: 295 LTC--NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 352
Query: 158 I-IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN 200
+ + GL VVV ++ P S W + A T G++RN
Sbjct: 353 VRLHYGLPVVVK-LLHPPSHWPLIKA-----------TVGLIRN 384
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 63 YMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAI-KNAGG 121
Y DD + TR+ IP L KLL E V A + LS + + ++ AI ++
Sbjct: 10 YQDDA-ELATRA---IPELTKLLNDEDQVVVNKAAVMVHQLS---KKEASRHAIMRSPQM 62
Query: 122 IPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
+ ++ ++ T D E G L NLS + +I G
Sbjct: 63 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG 103
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 36/256 (14%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ L +P + + A L +L + K R GG+ +V LL +
Sbjct: 83 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 142
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 143 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 200
Query: 151 CEDLKKSIID-DGLQVVVNHIIIPHSG------W------DPVSAGETCWS--------- 188
C K +I++ G+Q + H+ P W D + E
Sbjct: 201 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 260
Query: 189 -----TIFRNTSGVLRNASSAGEYARKKLRECE-GLIDSLLYVVKSAIEKSNIGNKSVEN 242
+ +G+L N + Y + K+ C+ G I++L+ V A ++ +I E
Sbjct: 261 GSDDINVVTCAAGILSNL-TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDI----TEP 314
Query: 243 CVCILRNLSFRCQEVE 258
+C LR+L+ R QE E
Sbjct: 315 AICALRHLTSRHQEAE 330
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVK--LLGHESPDVF 93
L ++ L + + + AA L +L + NK +GGI LV+ L + D+
Sbjct: 253 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 312
Query: 94 RNACGALRNLSYGRQNDENKR-AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
A ALR+L+ Q E + A++ G+P+++ LL + + + G++ NL+ C
Sbjct: 313 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 371
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102
L++P+ + N L++L D KQ+ G + LV+LLG + +V A G L N
Sbjct: 221 LTDPSQRLVQNCLWTLRNLS--DAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSN 277
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE-VKELVTGVLWNLSS----CEDLKKS 157
L+ N +NK + GGI L+ + + D E + E L +L+S E + +
Sbjct: 278 LTC--NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 335
Query: 158 I-IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN 200
+ + GL VVV ++ P S W + A T G++RN
Sbjct: 336 VRLHYGLPVVVK-LLHPPSHWPLIKA-----------TVGLIRN 367
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 36/256 (14%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ L +P + + A L +L + K R GG+ +V LL +
Sbjct: 83 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 142
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 143 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 200
Query: 151 CEDLKKSIID-DGLQVVVNHIIIPHSG------W------DPVSAGETCWS--------- 188
C K +I++ G+Q + H+ P W D + E
Sbjct: 201 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 260
Query: 189 -----TIFRNTSGVLRNASSAGEYARKKLRECE-GLIDSLLYVVKSAIEKSNIGNKSVEN 242
+ +G+L N + Y + K+ C+ G I++L+ V A ++ +I E
Sbjct: 261 GSDDINVVTCAAGILSNL-TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDI----TEP 314
Query: 243 CVCILRNLSFRCQEVE 258
+C LR+L+ R QE E
Sbjct: 315 AICALRHLTSRHQEAE 330
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVK--LLGHESPDVF 93
L ++ L + + + AA L +L + NK +GGI LV+ L + D+
Sbjct: 253 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 312
Query: 94 RNACGALRNLSYGRQNDENKR-AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
A ALR+L+ Q E + A++ G+P+++ LL + + + G++ NL+ C
Sbjct: 313 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 371
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102
L++P+ + N L++L D KQ+ G + LV+LLG + +V A G L N
Sbjct: 221 LTDPSQRLVQNCLWTLRNLS--DAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSN 277
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE-VKELVTGVLWNLSS----CEDLKKS 157
L+ N +NK + GGI L+ + + D E + E L +L+S E + +
Sbjct: 278 LTC--NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 335
Query: 158 I-IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN 200
+ + GL VVV ++ P S W + A T G++RN
Sbjct: 336 VRLHYGLPVVVK-LLHPPSHWPLIKA-----------TVGLIRN 367
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 36/256 (14%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ L +P + + A L +L + K R GG+ +V LL +
Sbjct: 85 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 144
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 145 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 202
Query: 151 CEDLKKSIID-DGLQVVVNHIIIPHSG------W------DPVSAGETCWS--------- 188
C K +I++ G+Q + H+ P W D + E
Sbjct: 203 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 262
Query: 189 -----TIFRNTSGVLRNASSAGEYARKKLRECE-GLIDSLLYVVKSAIEKSNIGNKSVEN 242
+ +G+L N + Y + K+ C+ G I++L+ V A ++ +I E
Sbjct: 263 GSDDINVVTCAAGILSNL-TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDI----TEP 316
Query: 243 CVCILRNLSFRCQEVE 258
+C LR+L+ R QE E
Sbjct: 317 AICALRHLTSRHQEAE 332
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVK--LLGHESPDVF 93
L ++ L + + + AA L +L + NK +GGI LV+ L + D+
Sbjct: 255 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 314
Query: 94 RNACGALRNLSYGRQNDENKR-AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
A ALR+L+ Q E + A++ G+P+++ LL + + + G++ NL+ C
Sbjct: 315 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 373
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102
L++P+ + N L++L D KQ+ G + LV+LLG + +V A G L N
Sbjct: 223 LTDPSQRLVQNCLWTLRNLS--DAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSN 279
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE-VKELVTGVLWNLSS----CEDLKKS 157
L+ N +NK + GGI L+ + + D E + E L +L+S E + +
Sbjct: 280 LTC--NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 337
Query: 158 I-IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN 200
+ + GL VVV ++ P S W + A T G++RN
Sbjct: 338 VRLHYGLPVVVK-LLHPPSHWPLIKA-----------TVGLIRN 369
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 36/256 (14%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ L +P + + A L +L + K R GG+ +V LL +
Sbjct: 87 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 146
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 147 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 204
Query: 151 CEDLKKSIID-DGLQVVVNHIIIPHSG------W------DPVSAGETCWS--------- 188
C K +I++ G+Q + H+ P W D + E
Sbjct: 205 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 264
Query: 189 -----TIFRNTSGVLRNASSAGEYARKKLRECE-GLIDSLLYVVKSAIEKSNIGNKSVEN 242
+ +G+L N + Y + K+ C+ G I++L+ V A ++ +I E
Sbjct: 265 GSDDINVVTCAAGILSNL-TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDI----TEP 318
Query: 243 CVCILRNLSFRCQEVE 258
+C LR+L+ R QE E
Sbjct: 319 AICALRHLTSRHQEAE 334
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVK--LLGHESPDVF 93
L ++ L + + + AA L +L + NK +GGI LV+ L + D+
Sbjct: 257 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 316
Query: 94 RNACGALRNLSYGRQNDENKR-AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
A ALR+L+ Q E + A++ G+P+++ LL + + + G++ NL+ C
Sbjct: 317 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 375
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102
L++P+ + N L++L D KQ+ G + LV+LLG + +V A G L N
Sbjct: 225 LTDPSQRLVQNCLWTLRNLS--DAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSN 281
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE-VKELVTGVLWNLSS----CEDLKKS 157
L+ N +NK + GGI L+ + + D E + E L +L+S E + +
Sbjct: 282 LTC--NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 339
Query: 158 I-IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN 200
+ + GL VVV ++ P S W + A T G++RN
Sbjct: 340 VRLHYGLPVVVK-LLHPPSHWPLIKA-----------TVGLIRN 371
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 36/256 (14%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ L +P + + A L +L + K R GG+ +V LL +
Sbjct: 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 157
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 158 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215
Query: 151 CEDLKKSIID-DGLQVVVNHIIIPHSG------W------DPVSAGETCWS--------- 188
C K +I++ G+Q + H+ P W D + E
Sbjct: 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 275
Query: 189 -----TIFRNTSGVLRNASSAGEYARKKLRECE-GLIDSLLYVVKSAIEKSNIGNKSVEN 242
+ +G+L N + Y + K+ C+ G I++L+ V A ++ +I E
Sbjct: 276 GSDDINVVTCAAGILSNL-TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDI----TEP 329
Query: 243 CVCILRNLSFRCQEVE 258
+C LR+L+ R QE E
Sbjct: 330 AICALRHLTSRHQEAE 345
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 54 AAAYLQHLCYMDDPNKQKTRSLGGIPPLVK--LLGHESPDVFRNACGALRNLSYGRQNDE 111
AA L +L + NK +GGI LV+ L + D+ A ALR+L+ Q E
Sbjct: 286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 345
Query: 112 NKR-AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
+ A++ G+P+++ LL + + + G++ NL+ C
Sbjct: 346 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102
L++P+ + N L++L D KQ+ G + LV+LLG + +V A G L N
Sbjct: 236 LTDPSQRLVQNCLWTLRNLS--DAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSN 292
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE-VKELVTGVLWNLSS----CEDLKKS 157
L+ N +NK + GGI L+ + + D E + E L +L+S E + +
Sbjct: 293 LTC--NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 350
Query: 158 I-IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN 200
+ + GL VVV ++ P S W + A T G++RN
Sbjct: 351 VRLHYGLPVVVK-LLHPPSHWPLIKA-----------TVGLIRN 382
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 63 YMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAI-KNAGG 121
Y DD + TR+ IP L KLL E V A + LS + + ++ AI ++
Sbjct: 8 YQDDA-ELATRA---IPELTKLLNDEDQVVVNKAAVMVHQLS---KKEASRHAIMRSPQM 60
Query: 122 IPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
+ ++ ++ T D E G L NLS + +I G
Sbjct: 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG 101
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 36/256 (14%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ L +P + + A L +L + K R GG+ +V LL +
Sbjct: 96 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 155
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 156 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 213
Query: 151 CEDLKKSIID-DGLQVVVNHIIIPHSG------W------DPVSAGETCWS--------- 188
C K +I++ G+Q + H+ P W D + E
Sbjct: 214 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 273
Query: 189 -----TIFRNTSGVLRNASSAGEYARKKLRECE-GLIDSLLYVVKSAIEKSNIGNKSVEN 242
+ +G+L N + Y + K+ C+ G I++L+ V A ++ +I E
Sbjct: 274 GSDDINVVTCAAGILSNL-TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDI----TEP 327
Query: 243 CVCILRNLSFRCQEVE 258
+C LR+L+ R QE E
Sbjct: 328 AICALRHLTSRHQEAE 343
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 54 AAAYLQHLCYMDDPNKQKTRSLGGIPPLVK--LLGHESPDVFRNACGALRNLSYGRQNDE 111
AA L +L + NK +GGI LV+ L + D+ A ALR+L+ Q E
Sbjct: 284 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 343
Query: 112 NKR-AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
+ A++ G+P+++ LL + + + G++ NL+ C
Sbjct: 344 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 384
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102
L++P+ + N L++L D KQ+ G + LV+LLG + +V A G L N
Sbjct: 234 LTDPSQRLVQNCLWTLRNLS--DAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSN 290
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE-VKELVTGVLWNLSS----CEDLKKS 157
L+ N +NK + GGI L+ + + D E + E L +L+S E + +
Sbjct: 291 LTC--NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 348
Query: 158 I-IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN 200
+ + GL VVV ++ P S W + A T G++RN
Sbjct: 349 VRLHYGLPVVVK-LLHPPSHWPLIKA-----------TVGLIRN 380
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 63 YMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAI-KNAGG 121
Y DD + TR+ IP L KLL E V A + LS + + ++ AI ++
Sbjct: 6 YQDDA-ELATRA---IPELTKLLNDEDQVVVNKAAVMVHQLS---KKEASRHAIMRSPQM 58
Query: 122 IPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
+ ++ ++ T D E G L NLS + +I G
Sbjct: 59 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG 99
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 49 VIKANAAAYLQHLCYMDDPNKQKTRSLGG-IPPLVKLLGHESPDVFRNACGALRNLSYGR 107
++ A L +L + D NK S+ G + LV L ES D+ + LRNLS+ R
Sbjct: 99 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW-R 157
Query: 108 QNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSI--IDDGLQ 164
+ +K+ ++ G + L+ + + V LWNLS+ C + K I +D L
Sbjct: 158 ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 217
Query: 165 VVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS---AGEYARKKLRECEGLIDS 221
+V + +T I + G+LRN SS E R+ LRE + +
Sbjct: 218 FLVGTLTYR---------SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQT 267
Query: 222 LLYVVKS 228
LL +KS
Sbjct: 268 LLQHLKS 274
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 61 LCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAG 120
L ++ ++Q R + L++ L S + NACG L NLS +N +++ A+ + G
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDMG 305
Query: 121 GIPLLINLLR 130
+ +L NL+
Sbjct: 306 AVSMLKNLIH 315
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 49 VIKANAAAYLQHLCYMDDPNKQKTRSLGG-IPPLVKLLGHESPDVFRNACGALRNLSYGR 107
++ A L +L + D NK S+ G + LV L ES D+ + LRNLS+ R
Sbjct: 99 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW-R 157
Query: 108 QNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSI--IDDGLQ 164
+ +K+ ++ G + L+ + + V LWNLS+ C + K I +D L
Sbjct: 158 ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 217
Query: 165 VVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS---AGEYARKKLRECEGLIDS 221
+V + +T I + G+LRN SS E R+ LRE + +
Sbjct: 218 FLVGTLTYR---------SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQT 267
Query: 222 LLYVVKS 228
LL +KS
Sbjct: 268 LLQHLKS 274
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 61 LCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAG 120
L ++ ++Q R + L++ L S + NACG L NLS +N +++ A+ + G
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDMG 305
Query: 121 GIPLLINLLR 130
+ +L NL+
Sbjct: 306 AVSMLKNLIH 315
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 49 VIKANAAAYLQHLCYMDDPNKQKTRSLGG-IPPLVKLLGHESPDVFRNACGALRNLSYGR 107
++ A L +L + D NK S+ G + LV L ES D+ + LRNLS+ R
Sbjct: 101 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW-R 159
Query: 108 QNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSI--IDDGLQ 164
+ +K+ ++ G + L+ + + V LWNLS+ C + K I +D L
Sbjct: 160 ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 219
Query: 165 VVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS---AGEYARKKLRECEGLIDS 221
+V + +T I + G+LRN SS E R+ LRE + +
Sbjct: 220 FLVGTLTYR---------SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQT 269
Query: 222 LLYVVKS 228
LL +KS
Sbjct: 270 LLQHLKS 276
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 61 LCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAG 120
L ++ ++Q R + L++ L S + NACG L NLS +N +++ A+ + G
Sbjct: 250 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDMG 307
Query: 121 GIPLLINLLR 130
+ +L NL+
Sbjct: 308 AVSMLKNLIH 317
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 49 VIKANAAAYLQHLCYMDDPNKQKTRSLGG-IPPLVKLLGHESPDVFRNACGALRNLSYGR 107
++ A L +L + D NK S+ G + LV L ES D+ + LRNLS+ R
Sbjct: 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW-R 273
Query: 108 QNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSI--IDDGLQ 164
+ +K+ ++ G + L+ + + V LWNLS+ C + K I +D L
Sbjct: 274 ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 333
Query: 165 VVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS---AGEYARKKLRECEGLIDS 221
+V + +T I + G+LRN SS E R+ LRE + +
Sbjct: 334 FLVGTLTYR---------SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQT 383
Query: 222 LLYVVKS 228
LL +KS
Sbjct: 384 LLQHLKS 390
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 61 LCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAG 120
L ++ ++Q R + L++ L S + NACG L NLS +N +++ A+ + G
Sbjct: 364 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDMG 421
Query: 121 GIPLLINLLR 130
+ +L NL+
Sbjct: 422 AVSMLKNLIH 431
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 104/255 (40%), Gaps = 34/255 (13%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ LS+P + A L +L + K R G+ +V LL +P
Sbjct: 100 FKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNP 159
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I GG L+ ++R + ++ + VL LS
Sbjct: 160 KFLAITTDCLQLLAYG--NQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSV 217
Query: 151 CEDLKKSIID-DGLQVVVNHI------IIPHSGW------DPVSAGETCWST-------- 189
C K +I++ G+Q + H+ ++ + W D + E S
Sbjct: 218 CPSNKPAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGLESVLKILVNQL 277
Query: 190 ------IFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENC 243
+ +G L N + + + + G +++L++ + A +K +I E
Sbjct: 278 SVDDVNVLTCATGTLSNLTCNNSKNKTLVTQNSG-VEALIHAILRAGDKDDI----TEPA 332
Query: 244 VCILRNLSFRCQEVE 258
VC LR+L+ R E E
Sbjct: 333 VCALRHLTSRHPEAE 347
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 60 HLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNA 119
HL D + TR+L P L KLL E P V A + LS + + ++RA+ +
Sbjct: 6 HLINYQDDAELATRAL---PELTKLLNDEDPVVVTKAAMIVNQLS---KKEASRRALMGS 59
Query: 120 GG-IPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
+ ++ ++ T+D + T +L NLS + +I G
Sbjct: 60 PQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSG 103
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 18/187 (9%)
Query: 49 VIKANAAAYLQHLCYMDDPNKQKTRSLGGIP-PLVKLLGHESPDVFRNACGALRNLSYGR 107
++ A L +L + D NK S G LV L ES D+ + LRNLS+ R
Sbjct: 99 TLRRYAGXALTNLTFGDVANKATLCSXKGCXRALVAQLKSESEDLQQVIASVLRNLSW-R 157
Query: 108 QNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSI--IDDGLQ 164
+ +K+ ++ G + L + + V LWNLS+ C + K I +D L
Sbjct: 158 ADVNSKKTLREVGSVKALXECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 217
Query: 165 VVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS---AGEYARKKLRECEGLIDS 221
+V + +T I + G+LRN SS E R+ LRE + +
Sbjct: 218 FLVGTLTYR---------SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQT 267
Query: 222 LLYVVKS 228
LL +KS
Sbjct: 268 LLQHLKS 274
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 61 LCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAG 120
L ++ ++Q R + L++ L S + NACG L NLS +N +++ A+ + G
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDXG 305
Query: 121 GIPLLINLLR 130
+ L NL+
Sbjct: 306 AVSXLKNLIH 315
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 18/187 (9%)
Query: 49 VIKANAAAYLQHLCYMDDPNKQKTRSLGGIP-PLVKLLGHESPDVFRNACGALRNLSYGR 107
++ A L +L + D NK S G LV L ES D+ + LRNLS+ R
Sbjct: 108 TLRRYAGXALTNLTFGDVANKATLCSXKGCXRALVAQLKSESEDLQQVIASVLRNLSW-R 166
Query: 108 QNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSI--IDDGLQ 164
+ +K+ ++ G + L + + V LWNLS+ C + K I +D L
Sbjct: 167 ADVNSKKTLREVGSVKALXECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 226
Query: 165 VVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS---AGEYARKKLRECEGLIDS 221
+V + +T I + G+LRN SS E R+ LRE + +
Sbjct: 227 FLVGTLTYR---------SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQT 276
Query: 222 LLYVVKS 228
LL +KS
Sbjct: 277 LLQHLKS 283
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 61 LCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAG 120
L ++ ++Q R + L++ L S + NACG L NLS +N +++ A+ + G
Sbjct: 257 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDXG 314
Query: 121 GIPLLINLLR 130
+ L NL+
Sbjct: 315 AVSXLKNLIH 324
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 16/165 (9%)
Query: 61 LCYMDDPNKQKTRSL---GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L Y+ D K +++ G P LV+LL H SP V A + N+ G +D + I
Sbjct: 230 LSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG--DDAQTQCII 287
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGW 177
+ +P L++LL + +K+ W +S+ K D +Q V+N II
Sbjct: 288 DHQALPCLLSLLTQNLKKSIKK---EACWTISNITAGNK----DQIQAVINAGIIGPL-- 338
Query: 178 DPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSL 222
V+ +T I + + + NA+S G + + K EG I L
Sbjct: 339 --VNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 381
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 12 QEEFYSPSLNKKCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMD-DPNKQ 70
++ SP L + ++ +L +I + + +N ++ A + L ++ P +
Sbjct: 14 RQHMDSPDLGTDDDDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIE 73
Query: 71 KTRSLGGIPPLVKLLGHES-PDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLL 129
+ G +P V+ L E P + A AL N++ G EN + + + G +P+ + LL
Sbjct: 74 EVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG--TSENTKVVIDHGAVPIFVKLL 131
Query: 130 RKTADAEVKELVTGVLWNLSS----CEDL 154
++D +V+E L N++ C DL
Sbjct: 132 GSSSD-DVREQAVWALGNVAGDSPKCRDL 159
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 20 LNKKCRNSSLRWRDPNL-TEVISFLSNPNNVIKAN-AAAYLQHLCYMDDPNKQKTRSLGG 77
L+KK + R P + + ++ + N N+V A A L +L + + +S GG
Sbjct: 40 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS-GG 98
Query: 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKT 132
IP LVK+LG V A L NL ++ K A++ AGG+ ++ LL KT
Sbjct: 99 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEG--AKMAVRLAGGLQKMVALLNKT 151
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 63 YMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAI-KNAGG 121
Y DD + TR+ IP L KLL E V A + LS + + ++ AI ++
Sbjct: 4 YQDDA-ELATRA---IPELTKLLNDEDQVVVNKAAVMVHQLS---KKEASRHAIMRSPQM 56
Query: 122 IPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
+ ++ ++ T D E G L NLS + +I G
Sbjct: 57 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG 97
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 20 LNKKCRNSSLRWRDPNL-TEVISFLSNPNNVIKAN-AAAYLQHLCYMDDPNKQKTRSLGG 77
L+KK + R P + + ++ + N N+V A A L +L + + +S GG
Sbjct: 40 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS-GG 98
Query: 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKT 132
IP LVK+LG V A L NL ++ K A++ AGG+ ++ LL KT
Sbjct: 99 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA--KMAVRLAGGLQKMVALLNKT 151
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 63 YMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAI-KNAGG 121
Y DD + TR+ IP L KLL E V A + LS + + ++ AI ++
Sbjct: 4 YQDDA-ELATRA---IPELTKLLNDEDQVVVNKAAVMVHQLS---KKEASRHAIMRSPQM 56
Query: 122 IPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
+ ++ ++ T D E G L NLS + +I G
Sbjct: 57 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG 97
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 16/165 (9%)
Query: 61 LCYMDDPNKQKTRSL---GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L Y+ D K +++ G P LV+LL H SP V A + N+ G +D + I
Sbjct: 268 LSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG--DDAQTQCII 325
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGW 177
+ +P L++LL + +K+ W +S+ K D +Q V+N II
Sbjct: 326 DHQALPCLLSLLTQNLKKSIKK---EACWTISNITAGNK----DQIQAVINAGIIGPL-- 376
Query: 178 DPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSL 222
V+ +T I + + + NA+S G + + K EG I L
Sbjct: 377 --VNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 419
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 44 SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHES-PDVFRNACGALRN 102
S+ NN+ + + L P ++ G +P V+ L E P + A AL N
Sbjct: 85 SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTN 144
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS----CEDL 154
++ G EN + + + G +P+ + LL ++D +V+E L N++ C DL
Sbjct: 145 IASG--TSENTKVVIDHGAVPIFVKLLGSSSD-DVREQAVWALGNVAGDSPKCRDL 197
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 20/199 (10%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ L +P + + A L +L + K R GG+ V LL +
Sbjct: 40 FKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKXVALLNKTNV 99
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N+ R ++ + VL LS
Sbjct: 100 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIXRTYTYEKLLWTTSRVLKVLSV 157
Query: 151 CEDLKKSIID-DGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYAR 209
C K +I++ G Q + H+ P + +N LRN S A
Sbjct: 158 CSSNKPAIVEAGGXQALGLHLTDPS-------------QRLVQNCLWTLRNLSDAA---- 200
Query: 210 KKLRECEGLIDSLLYVVKS 228
K EGL+ +L+ ++ S
Sbjct: 201 TKQEGXEGLLGTLVQLLGS 219
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVK--LLGHESPDVF 93
L ++ L + + + AA L +L + NK +GGI LV+ L + D+
Sbjct: 210 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDREDIT 269
Query: 94 RNACGALRNLSYGRQNDENKR-AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
A ALR+L+ Q E + A++ G+P+++ LL + + + G++ NL+ C
Sbjct: 270 EPAICALRHLTSRHQEAEXAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 328
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102
L++P+ + N L++L D KQ+ G + LV+LLG + +V A G L N
Sbjct: 178 LTDPSQRLVQNCLWTLRNLS--DAATKQEGXE-GLLGTLVQLLGSDDINVVTCAAGILSN 234
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE-VKELVTGVLWNLSS----CEDLKKS 157
L+ N +NK + GGI L+ + + D E + E L +L+S E + +
Sbjct: 235 LTC--NNYKNKXXVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEXAQNA 292
Query: 158 I-IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN 200
+ + GL VVV ++ P S W + A T G++RN
Sbjct: 293 VRLHYGLPVVVK-LLHPPSHWPLIKA-----------TVGLIRN 324
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L +LC +P +P LV+LL H P+V ++C A+ L+ G +E +
Sbjct: 170 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVV 227
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
G +P L+ LL T V + + ++ ++ + +ID G
Sbjct: 228 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 272
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
IS L++P+ I A L ++ + G I PL+ LL PD+ ACG
Sbjct: 105 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA--VPDLSTLACGY 162
Query: 100 LRNLSYGRQN 109
LRNL++ N
Sbjct: 163 LRNLTWTLSN 172
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L +LC +P +P LV+LL H P+V ++C A+ L+ G +E +
Sbjct: 159 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVV 216
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
G +P L+ LL T V + + ++ ++ + +ID G
Sbjct: 217 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 261
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
IS L++P+ I A L ++ + G I PL+ LL PD+ ACG
Sbjct: 94 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA--VPDLSTLACGY 151
Query: 100 LRNLSYGRQN 109
LRNL++ N
Sbjct: 152 LRNLTWTLSN 161
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L +LC +P +P LV+LL H P+V ++C A+ L+ G +E +
Sbjct: 163 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVV 220
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
G +P L+ LL T V + + ++ ++ + +ID G
Sbjct: 221 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 265
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
IS L++P+ I A L ++ + G I PL+ LL PD+ ACG
Sbjct: 98 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA--VPDLSTLACGY 155
Query: 100 LRNLSYGRQN 109
LRNL++ N
Sbjct: 156 LRNLTWTLSN 165
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L +LC +P +P LV+LL H P+V ++C A+ L+ G +E +
Sbjct: 164 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVV 221
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
G +P L+ LL T V + + ++ ++ + +ID G
Sbjct: 222 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 266
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
IS L++P+ I A L ++ + G I PL+ LL PD+ ACG
Sbjct: 99 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA--VPDLSTLACGY 156
Query: 100 LRNLSYGRQN 109
LRNL++ N
Sbjct: 157 LRNLTWTLSN 166
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L +LC +P +P LV+LL H P+V ++C A+ L+ G +E +
Sbjct: 164 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVV 221
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
G +P L+ LL T V + + ++ ++ + +ID G
Sbjct: 222 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 266
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
IS L++P+ I A L ++ + G I PL+ LL PD+ ACG
Sbjct: 99 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA--VPDLSTLACGY 156
Query: 100 LRNLSYGRQN 109
LRNL++ N
Sbjct: 157 LRNLTWTLSN 166
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L +LC +P +P LV+LL H P+V ++C A+ L+ G +E +
Sbjct: 159 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVV 216
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
G +P L+ LL T V + + ++ ++ + +ID G
Sbjct: 217 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 261
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
IS L++P+ I A L ++ + G I PL+ LL PD+ ACG
Sbjct: 94 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA--VPDLSTLACGY 151
Query: 100 LRNLSYGRQN 109
LRNL++ N
Sbjct: 152 LRNLTWTLSN 161
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L +LC +P +P LV+LL H P+V ++C A+ L+ G +E +
Sbjct: 164 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVV 221
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
G +P L+ LL T V + + ++ ++ + +ID G
Sbjct: 222 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 266
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
IS L++P+ I A L ++ + G I PL+ LL PD+ ACG
Sbjct: 99 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA--VPDLSTLACGY 156
Query: 100 LRNLSYGRQN 109
LRNL++ N
Sbjct: 157 LRNLTWTLSN 166
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L +LC +P +P LV+LL H P+V ++C A+ L+ G +E +
Sbjct: 233 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVV 290
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
G +P L+ LL T V + + ++ ++ + +ID G
Sbjct: 291 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 335
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
IS L++P+ I A L ++ + G I PL+ LL PD+ ACG
Sbjct: 168 ISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA--VPDLSTLACGY 225
Query: 100 LRNLSYGRQN 109
LRNL++ N
Sbjct: 226 LRNLTWTLSN 235
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L +LC +P +P LV+LL H P+V ++C A+ L+ G +E +
Sbjct: 190 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVV 247
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
G +P L+ LL T V + + ++ ++ + +ID G
Sbjct: 248 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 292
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
IS L++P+ I A L ++ + G I PL+ LL PD+ ACG
Sbjct: 125 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA--VPDLSTLACGY 182
Query: 100 LRNLSYGRQN 109
LRNL++ N
Sbjct: 183 LRNLTWTLSN 192
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L +LC +P +P LV+LL H P+V ++C A+ L+ G +E +
Sbjct: 163 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVV 220
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
G +P L+ LL T V + + ++ ++ + +ID G
Sbjct: 221 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 265
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
IS L++P+ I A L ++ + G I PL+ LL PD+ ACG
Sbjct: 98 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA--VPDLSTLACGY 155
Query: 100 LRNLSYGRQN 109
LRNL++ N
Sbjct: 156 LRNLTWTLSN 165
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L +LC +P +P LV+LL H P+V ++C A+ L+ G +E +
Sbjct: 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVV 271
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVV 166
G +P L+ LL T V + + ++ ++ + +ID G V
Sbjct: 272 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAV 320
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
IS L++P+ I A L ++ + G I PL+ LL PD+ ACG
Sbjct: 149 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA--VPDLSTLACGY 206
Query: 100 LRNLSYGRQN 109
LRNL++ N
Sbjct: 207 LRNLTWTLSN 216
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L +LC +P +P LV+LL H P+V ++C A+ L+ G +E +
Sbjct: 198 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVV 255
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVV 166
G +P L+ LL T V + + ++ ++ + +ID G V
Sbjct: 256 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAV 304
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
IS L++P+ I A L ++ + G I PL+ LL PD+ ACG
Sbjct: 133 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA--VPDLSTLACGY 190
Query: 100 LRNLSYGRQN 109
LRNL++ N
Sbjct: 191 LRNLTWTLSN 200
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L +LC +P +P LV+LL H P+V ++C A+ L+ G +E +
Sbjct: 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVV 271
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
G +P L+ LL T V + + ++ ++ + +ID G
Sbjct: 272 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 316
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
IS L++P+ I A L ++ + G I PL+ LL PD+ ACG
Sbjct: 149 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA--VPDLSTLACGY 206
Query: 100 LRNLSYGRQN 109
LRNL++ N
Sbjct: 207 LRNLTWTLSN 216
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L +LC +P +P LV+LL H P+V ++C A+ L+ G +E +
Sbjct: 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVV 271
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
G +P L+ LL T V + + ++ ++ + +ID G
Sbjct: 272 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 316
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
IS L++P+ I A L ++ + G I PL+ LL PD+ ACG
Sbjct: 149 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA--VPDLSTLACGY 206
Query: 100 LRNLSYGRQN 109
LRNL++ N
Sbjct: 207 LRNLTWTLSN 216
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEV 137
+P LV+LL H P+V ++C A+ L+ G +E + G +P L+ LL T V
Sbjct: 220 LPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVVKKGVVPQLVKLLGATELPIV 277
Query: 138 KELVTGVLWNLSSCEDLKKSIIDDG 162
+ + ++ ++ + +ID G
Sbjct: 278 TPALRAIGNIVTGTDEQTQKVIDAG 302
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
IS L++P+ I A L ++ + G I PL+ LL PD+ ACG
Sbjct: 135 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA--VPDLSTLACGY 192
Query: 100 LRNLSYGRQN 109
LRNL++ N
Sbjct: 193 LRNLTWTLSN 202
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
L +LC +P +P LV+LL H+ P+V + C A+ L+ G +E +
Sbjct: 165 LSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGP--NERIGMVV 222
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
G +P L+ LL + V + + ++ ++ + +ID G
Sbjct: 223 KTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAG 267
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
IS L++P+ I A L ++ + G + PL+ LL PD+ ACG
Sbjct: 100 ISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLA--VPDMSSLACGY 157
Query: 100 LRNLSYGRQN 109
LRNL++ N
Sbjct: 158 LRNLTWTLSN 167
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 42 FLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALR 101
LS+P IK A + ++ + Q IPPLVKLL + AC A+
Sbjct: 263 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAIS 322
Query: 102 NLSY-GRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNL 148
N S G Q + R + + G I L +LL + AD + E+ L N+
Sbjct: 323 NASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIADNRIIEVTLDALENI 369
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 42 FLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALR 101
LS+P IK A + ++ + Q IPPLVKLL + AC A+
Sbjct: 263 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAIS 322
Query: 102 NLSY-GRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNL 148
N S G Q + R + + G I L +LL + AD + E+ L N+
Sbjct: 323 NASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIADNRIIEVTLDALENI 369
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 42 FLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALR 101
LS+P IK A + ++ + Q IPPLVKLL + AC A+
Sbjct: 262 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAIS 321
Query: 102 NLSY-GRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNL 148
N S G Q + R + + G I L +LL + AD + E+ L N+
Sbjct: 322 NASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIADNRIIEVTLDALENI 368
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 42 FLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALR 101
LS+P IK A + ++ + Q IPPLVKLL + AC A+
Sbjct: 262 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAIS 321
Query: 102 NLSY-GRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNL 148
N S G Q + R + + G I L +LL + AD + E+ L N+
Sbjct: 322 NASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIADNRIIEVTLDALENI 368
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 42 FLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALR 101
LS+P IK A + ++ + Q IPPLVKLL + AC A+
Sbjct: 261 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 320
Query: 102 NLSY-GRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNL 148
N S G Q + R + + G I L +LL + AD + E+ L N+
Sbjct: 321 NASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIADNRIIEVTLDALENI 367
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 42 FLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALR 101
LS+P IK A + ++ + Q IPPLVKLL + AC A+
Sbjct: 261 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 320
Query: 102 NLSY-GRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNL 148
N S G Q + R + + G I L +LL + AD + E+ L N+
Sbjct: 321 NASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIADNRIIEVTLDALENI 367
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 57/136 (41%), Gaps = 4/136 (2%)
Query: 42 FLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALR 101
LS+P IK A + ++ + Q IPPLVKLL + AC A+
Sbjct: 349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 408
Query: 102 NLSY-GRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIID 160
N S G Q + R + + G I L +LL + AD + E+ L N+ + K
Sbjct: 409 NASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIADNRIIEVTLDALENILKMGEADKEA-- 465
Query: 161 DGLQVVVNHIIIPHSG 176
GL + N I +G
Sbjct: 466 RGLNINENADFIEKAG 481
>pdb|3BAN|A Chain A, The Crystal Structure Of Mannonate Dehydratase From
Streptococcus Suis Serotype2
pdb|3BAN|B Chain B, The Crystal Structure Of Mannonate Dehydratase From
Streptococcus Suis Serotype2
pdb|3BDK|A Chain A, Crystal Structure Of Streptococcus Suis Mannonate
Dehydratase Complexed With Substrate Analogue
pdb|3BDK|B Chain B, Crystal Structure Of Streptococcus Suis Mannonate
Dehydratase Complexed With Substrate Analogue
pdb|3DBN|A Chain A, Crystal Structure Of The Streptoccocus Suis Serotype2 D-
Mannonate Dehydratase In Complex With Its Substrate
pdb|3DBN|B Chain B, Crystal Structure Of The Streptoccocus Suis Serotype2 D-
Mannonate Dehydratase In Complex With Its Substrate
pdb|3FVM|A Chain A, Crystal Structure Of Steptococcus Suis Mannonate
Dehydratase With Metal Mn++
pdb|3FVM|B Chain B, Crystal Structure Of Steptococcus Suis Mannonate
Dehydratase With Metal Mn++
Length = 386
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 11/101 (10%)
Query: 105 YGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQ 164
YG+++ IK IP + ++ D V G W L + +LKK + + GL+
Sbjct: 28 YGKKDPVTLEEIK---AIPGMQGIVTAVYDVPV-----GQAWPLENILELKKMVEEAGLE 79
Query: 165 VVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAG 205
+ V I H + + G+ + N +RN +AG
Sbjct: 80 ITVIESIPVH---EDIKQGKPNRDALIENYKTSIRNVGAAG 117
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 188 STIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKS 233
S +F +S V + +A +AR E E +ID ++ V+ SA+EK+
Sbjct: 83 SQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNVIDSAVEKT 128
>pdb|1ZJC|A Chain A, Aminopeptidase S From S. Aureus
Length = 418
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 236 GNKSVENCVCILRNLSFRCQEVEDPNYDKHPVVSQSRTSPQAKGKSNIW 284
GN VEN + NLS Q+++ NY VS+ K++IW
Sbjct: 186 GNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIW 234
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 53 NAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN 112
NA L +LC P + + + L LL DV +AC AL LS G ++
Sbjct: 166 NAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP--NDK 223
Query: 113 KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSII 159
+A+ +AG L+ LL D +V + N+ + +D++ +I
Sbjct: 224 IQAVIDAGVCRRLVELLMHN-DYKVVSPALRAVGNIVTGDDIQTQVI 269
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 53 NAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN 112
NA L +LC P + + + L LL DV +AC AL LS G ++
Sbjct: 169 NAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP--NDK 226
Query: 113 KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSII 159
+A+ +AG L+ LL D +V + N+ + +D++ +I
Sbjct: 227 IQAVIDAGVCRRLVELLMHN-DYKVVSPALRAVGNIVTGDDIQTQVI 272
>pdb|3EU7|A Chain A, Crystal Structure Of A Palb2 BRCA2 COMPLEX
Length = 356
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 144 VLWNLSSCEDLKKSIIDDGLQVVVNH 169
V+WNL + + LKK IDD Q V H
Sbjct: 206 VIWNLKTGQLLKKMHIDDSYQASVCH 231
>pdb|2W18|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Human
Palb2
Length = 356
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 144 VLWNLSSCEDLKKSIIDDGLQVVVNH 169
V+WNL + + LKK IDD Q V H
Sbjct: 206 VIWNLKTGQLLKKMHIDDSYQASVCH 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,594,713
Number of Sequences: 62578
Number of extensions: 336695
Number of successful extensions: 1139
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 167
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)