Query psy15592
Match_columns 294
No_of_seqs 149 out of 1746
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 16:32:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1048|consensus 100.0 4.3E-34 9.2E-39 273.2 19.1 256 31-287 230-487 (717)
2 KOG0166|consensus 99.9 5.8E-23 1.3E-27 191.7 18.9 224 11-255 126-396 (514)
3 PLN03200 cellulose synthase-in 99.9 8.6E-22 1.9E-26 207.3 21.6 230 9-254 72-314 (2102)
4 KOG4224|consensus 99.9 5.9E-22 1.3E-26 175.4 16.5 222 10-254 182-407 (550)
5 COG5064 SRP1 Karyopherin (impo 99.9 7.9E-22 1.7E-26 173.3 16.2 221 12-254 132-400 (526)
6 KOG4224|consensus 99.9 4.2E-22 9.1E-27 176.3 14.3 220 11-254 142-365 (550)
7 PLN03200 cellulose synthase-in 99.9 2E-21 4.4E-26 204.6 21.0 227 10-255 30-264 (2102)
8 KOG2122|consensus 99.9 1.9E-22 4E-27 201.1 6.7 252 14-282 317-588 (2195)
9 KOG0166|consensus 99.8 1E-18 2.3E-23 163.3 17.0 206 29-255 104-311 (514)
10 PF05804 KAP: Kinesin-associat 99.8 3.6E-17 7.8E-22 160.2 18.9 216 10-254 260-481 (708)
11 KOG2122|consensus 99.8 9.1E-18 2E-22 168.1 14.8 218 16-254 372-603 (2195)
12 PF05804 KAP: Kinesin-associat 99.7 4.1E-16 9E-21 152.9 17.6 203 23-254 320-522 (708)
13 COG5064 SRP1 Karyopherin (impo 99.7 2E-16 4.2E-21 139.5 13.6 218 28-267 108-328 (526)
14 KOG4199|consensus 99.6 8.4E-14 1.8E-18 122.8 16.4 216 23-256 178-407 (461)
15 KOG1048|consensus 99.6 2.4E-14 5.3E-19 138.1 13.5 222 23-255 264-598 (717)
16 PF04826 Arm_2: Armadillo-like 99.6 2.7E-13 5.9E-18 118.8 18.9 198 30-254 8-207 (254)
17 cd00020 ARM Armadillo/beta-cat 99.6 1.4E-13 3E-18 106.3 13.8 118 30-150 3-120 (120)
18 KOG4199|consensus 99.6 4.4E-13 9.5E-18 118.3 18.1 217 26-256 137-363 (461)
19 PF04826 Arm_2: Armadillo-like 99.5 1.7E-13 3.8E-18 120.0 15.3 174 11-204 29-206 (254)
20 cd00020 ARM Armadillo/beta-cat 99.4 1.3E-11 2.8E-16 95.1 13.7 118 71-203 2-120 (120)
21 KOG4500|consensus 99.3 1.1E-10 2.5E-15 106.2 15.0 219 31-254 84-392 (604)
22 PF10508 Proteasom_PSMB: Prote 99.1 4.8E-09 1E-13 101.2 19.8 204 32-253 75-279 (503)
23 PF03224 V-ATPase_H_N: V-ATPas 99.1 3.3E-09 7.1E-14 96.4 13.6 188 35-242 106-304 (312)
24 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.2E-08 2.5E-13 92.8 13.7 205 36-255 57-272 (312)
25 KOG2160|consensus 98.9 1.3E-07 2.9E-12 84.9 19.1 146 24-171 114-262 (342)
26 KOG1222|consensus 98.9 1.2E-08 2.5E-13 94.4 12.5 202 23-253 334-535 (791)
27 PF10508 Proteasom_PSMB: Prote 98.9 1.3E-07 2.9E-12 91.2 19.6 211 27-255 112-322 (503)
28 KOG2160|consensus 98.9 3.7E-07 8.1E-12 82.1 19.1 191 45-255 94-285 (342)
29 cd00256 VATPase_H VATPase_H, r 98.7 7.7E-07 1.7E-11 83.3 16.9 205 38-255 147-428 (429)
30 KOG1293|consensus 98.7 3.8E-07 8.3E-12 87.2 14.5 207 27-254 318-535 (678)
31 KOG1293|consensus 98.6 4.7E-06 1E-10 79.9 19.5 211 30-255 415-630 (678)
32 KOG4500|consensus 98.6 1.7E-06 3.6E-11 79.5 15.2 223 9-250 101-429 (604)
33 KOG1222|consensus 98.6 1.9E-06 4.1E-11 80.1 14.6 180 49-254 278-457 (791)
34 KOG4646|consensus 98.6 5.4E-07 1.2E-11 70.3 9.1 130 34-168 16-147 (173)
35 cd00256 VATPase_H VATPase_H, r 98.5 9.4E-06 2E-10 76.1 17.8 178 34-227 101-286 (429)
36 PF00514 Arm: Armadillo/beta-c 98.5 2.3E-07 4.9E-12 58.0 4.3 40 65-104 1-40 (41)
37 KOG0168|consensus 98.4 6.5E-06 1.4E-10 80.9 15.4 220 10-253 183-414 (1051)
38 PF00514 Arm: Armadillo/beta-c 98.3 1.4E-06 3E-11 54.4 4.5 41 109-150 1-41 (41)
39 KOG0168|consensus 98.2 3.3E-05 7.2E-10 76.1 14.3 193 36-254 169-366 (1051)
40 KOG0946|consensus 98.2 4.9E-05 1.1E-09 74.4 14.5 187 31-228 58-265 (970)
41 KOG4646|consensus 98.2 2.4E-05 5.1E-10 61.3 9.9 128 78-226 18-146 (173)
42 KOG2973|consensus 98.2 6.5E-05 1.4E-09 66.5 13.7 191 36-254 5-206 (353)
43 KOG2759|consensus 98.1 0.0001 2.2E-09 67.7 14.7 204 39-255 161-441 (442)
44 PF09759 Atx10homo_assoc: Spin 98.1 1.7E-05 3.7E-10 59.5 8.0 68 50-119 2-71 (102)
45 PRK09687 putative lyase; Provi 98.1 0.00015 3.3E-09 64.9 14.3 64 35-104 55-119 (280)
46 smart00185 ARM Armadillo/beta- 98.0 1.2E-05 2.6E-10 49.6 5.0 39 66-104 2-40 (41)
47 PRK09687 putative lyase; Provi 98.0 0.00018 3.9E-09 64.4 14.3 98 34-150 23-120 (280)
48 KOG3678|consensus 98.0 0.00014 3.1E-09 67.7 13.7 171 29-219 175-350 (832)
49 KOG2171|consensus 97.9 0.00036 7.7E-09 71.1 16.0 225 35-275 390-616 (1075)
50 PF13646 HEAT_2: HEAT repeats; 97.9 3.9E-05 8.4E-10 55.7 6.5 87 36-146 1-88 (88)
51 PF05536 Neurochondrin: Neuroc 97.8 0.0018 3.9E-08 63.2 17.9 154 35-204 6-169 (543)
52 KOG2759|consensus 97.8 0.00057 1.2E-08 62.9 13.5 175 36-227 116-299 (442)
53 KOG0946|consensus 97.8 0.0021 4.6E-08 63.4 17.4 215 33-270 21-257 (970)
54 PF10165 Ric8: Guanine nucleot 97.7 0.0009 1.9E-08 63.8 14.3 196 55-255 2-221 (446)
55 smart00185 ARM Armadillo/beta- 97.7 9.7E-05 2.1E-09 45.4 5.2 40 110-150 2-41 (41)
56 PRK13800 putative oxidoreducta 97.7 0.0018 4E-08 67.0 17.4 105 32-148 619-741 (897)
57 KOG2171|consensus 97.5 0.011 2.4E-07 60.7 19.0 173 36-229 350-528 (1075)
58 KOG3678|consensus 97.5 0.00061 1.3E-08 63.6 9.2 146 23-171 211-357 (832)
59 COG5369 Uncharacterized conser 97.5 0.0016 3.4E-08 61.8 11.6 144 26-172 465-618 (743)
60 PRK13800 putative oxidoreducta 97.4 0.0058 1.3E-07 63.4 16.7 103 36-150 686-804 (897)
61 COG5369 Uncharacterized conser 97.4 0.00068 1.5E-08 64.2 8.8 188 28-230 425-621 (743)
62 PF01602 Adaptin_N: Adaptin N 97.4 0.0053 1.1E-07 59.5 15.1 183 36-254 116-298 (526)
63 PF05536 Neurochondrin: Neuroc 97.4 0.0062 1.3E-07 59.5 15.0 156 78-255 7-171 (543)
64 PF10165 Ric8: Guanine nucleot 97.3 0.022 4.8E-07 54.4 17.1 220 25-254 13-281 (446)
65 PF09759 Atx10homo_assoc: Spin 97.2 0.0021 4.5E-08 48.3 7.7 67 92-160 2-70 (102)
66 PF13513 HEAT_EZ: HEAT-like re 97.1 0.00087 1.9E-08 44.3 4.3 55 48-103 1-55 (55)
67 PF01602 Adaptin_N: Adaptin N 97.0 0.055 1.2E-06 52.4 17.3 180 34-253 42-222 (526)
68 KOG2973|consensus 96.9 0.024 5.3E-07 50.5 12.6 152 79-253 6-162 (353)
69 PF08045 CDC14: Cell division 96.8 0.019 4.2E-07 50.3 11.2 82 49-132 106-188 (257)
70 KOG2023|consensus 96.7 0.04 8.6E-07 53.9 13.6 233 10-262 143-432 (885)
71 KOG2734|consensus 96.7 0.074 1.6E-06 49.7 14.2 210 29-254 171-402 (536)
72 PF13646 HEAT_2: HEAT repeats; 96.6 0.017 3.7E-07 41.6 8.4 71 78-172 1-72 (88)
73 PF13513 HEAT_EZ: HEAT-like re 96.5 0.0056 1.2E-07 40.3 4.6 55 90-148 1-55 (55)
74 PTZ00429 beta-adaptin; Provisi 96.4 0.13 2.7E-06 52.2 15.1 69 78-152 142-210 (746)
75 PF11841 DUF3361: Domain of un 96.3 0.081 1.8E-06 43.0 11.0 131 69-214 4-143 (160)
76 PTZ00429 beta-adaptin; Provisi 96.3 0.49 1.1E-05 48.1 18.7 140 36-204 70-209 (746)
77 KOG1517|consensus 96.2 0.15 3.2E-06 52.4 14.6 140 30-172 508-652 (1387)
78 PF12348 CLASP_N: CLASP N term 96.2 0.065 1.4E-06 46.0 11.0 189 44-255 17-209 (228)
79 PF13764 E3_UbLigase_R4: E3 ub 96.2 0.48 1E-05 48.3 18.2 234 9-255 83-367 (802)
80 KOG2734|consensus 96.2 0.45 9.8E-06 44.6 16.4 212 29-254 120-348 (536)
81 PF11698 V-ATPase_H_C: V-ATPas 96.1 0.017 3.6E-07 44.6 5.7 69 36-104 45-114 (119)
82 KOG4413|consensus 96.0 0.16 3.4E-06 46.0 12.4 177 36-229 84-267 (524)
83 PF14664 RICTOR_N: Rapamycin-i 96.0 0.37 8E-06 44.9 15.3 171 58-254 7-178 (371)
84 KOG4413|consensus 96.0 0.48 1E-05 43.0 15.1 217 30-254 124-379 (524)
85 KOG4151|consensus 96.0 0.098 2.1E-06 52.1 11.7 197 28-251 498-698 (748)
86 PF11841 DUF3361: Domain of un 95.9 0.2 4.4E-06 40.7 11.5 125 114-255 5-134 (160)
87 KOG1789|consensus 95.6 0.21 4.5E-06 51.6 12.6 142 47-204 1738-1884(2235)
88 PF04063 DUF383: Domain of unk 95.6 0.15 3.2E-06 43.0 10.1 127 45-176 6-158 (192)
89 PF07814 WAPL: Wings apart-lik 95.6 0.84 1.8E-05 42.4 16.1 213 36-255 23-302 (361)
90 KOG1059|consensus 95.6 0.72 1.6E-05 45.8 15.6 83 37-131 147-229 (877)
91 KOG2023|consensus 95.2 0.24 5.1E-06 48.7 11.1 173 34-229 128-307 (885)
92 KOG0212|consensus 95.0 0.26 5.7E-06 47.5 10.7 197 34-255 208-409 (675)
93 PF14664 RICTOR_N: Rapamycin-i 95.0 0.5 1.1E-05 44.0 12.5 202 31-250 63-267 (371)
94 PF12719 Cnd3: Nuclear condens 94.8 1.8 3.9E-05 39.0 15.3 201 34-254 26-235 (298)
95 PF12717 Cnd1: non-SMC mitotic 94.7 0.54 1.2E-05 38.9 10.9 88 33-131 24-112 (178)
96 TIGR02270 conserved hypothetic 94.7 1.3 2.7E-05 42.0 14.4 60 34-104 54-114 (410)
97 PF12348 CLASP_N: CLASP N term 94.6 0.36 7.9E-06 41.3 9.8 110 34-151 94-207 (228)
98 KOG1241|consensus 94.5 2 4.3E-05 43.0 15.4 196 40-261 265-486 (859)
99 KOG0212|consensus 94.4 0.59 1.3E-05 45.1 11.4 191 34-254 250-446 (675)
100 PF11698 V-ATPase_H_C: V-ATPas 94.4 0.1 2.3E-06 40.2 5.4 69 77-148 44-113 (119)
101 PF02985 HEAT: HEAT repeat; I 94.2 0.1 2.2E-06 30.0 3.9 28 36-63 2-29 (31)
102 KOG1789|consensus 94.2 0.64 1.4E-05 48.2 11.5 113 33-150 1770-1883(2235)
103 PF04063 DUF383: Domain of unk 94.2 0.22 4.7E-06 42.0 7.3 82 32-117 50-141 (192)
104 PF12717 Cnd1: non-SMC mitotic 94.1 0.63 1.4E-05 38.6 10.1 110 47-171 1-111 (178)
105 PF02985 HEAT: HEAT repeat; I 94.1 0.1 2.2E-06 30.0 3.8 28 78-105 2-29 (31)
106 PF12755 Vac14_Fab1_bd: Vacuol 94.1 0.27 5.8E-06 36.7 6.9 66 34-103 27-94 (97)
107 PF12755 Vac14_Fab1_bd: Vacuol 94.1 0.5 1.1E-05 35.2 8.4 60 77-142 28-89 (97)
108 KOG1062|consensus 94.1 4.1 8.8E-05 41.2 16.7 100 36-150 315-414 (866)
109 PF14668 RICTOR_V: Rapamycin-i 94.1 0.3 6.5E-06 34.3 6.7 67 93-162 4-70 (73)
110 TIGR02270 conserved hypothetic 94.1 0.56 1.2E-05 44.3 10.6 59 78-150 149-207 (410)
111 KOG3036|consensus 93.8 4.3 9.3E-05 35.5 17.8 149 51-215 96-258 (293)
112 PF08045 CDC14: Cell division 93.5 0.26 5.7E-06 43.3 6.7 83 23-105 122-207 (257)
113 COG5231 VMA13 Vacuolar H+-ATPa 93.4 2 4.2E-05 39.0 12.0 109 38-150 153-265 (432)
114 KOG1242|consensus 93.2 1.8 3.9E-05 42.2 12.3 178 49-254 269-446 (569)
115 KOG1991|consensus 91.8 3 6.4E-05 43.0 12.4 133 33-171 409-553 (1010)
116 PF06371 Drf_GBD: Diaphanous G 91.8 2.2 4.8E-05 35.2 10.1 109 34-149 66-186 (187)
117 KOG2259|consensus 91.6 0.8 1.7E-05 45.1 7.8 111 26-150 365-475 (823)
118 KOG2999|consensus 91.4 5 0.00011 39.0 12.8 157 79-255 86-245 (713)
119 KOG1242|consensus 91.4 6.4 0.00014 38.5 13.7 191 31-254 210-403 (569)
120 COG5096 Vesicle coat complex, 91.3 9.4 0.0002 38.8 15.2 101 78-203 94-195 (757)
121 COG5096 Vesicle coat complex, 91.3 2.4 5.3E-05 42.9 11.2 101 37-150 95-195 (757)
122 COG5231 VMA13 Vacuolar H+-ATPa 91.2 3.4 7.3E-05 37.5 10.8 123 89-226 162-288 (432)
123 KOG3036|consensus 91.1 3.6 7.8E-05 35.9 10.5 135 23-160 109-257 (293)
124 KOG1241|consensus 91.0 10 0.00022 38.2 14.8 114 32-149 358-476 (859)
125 COG1413 FOG: HEAT repeat [Ener 90.9 10 0.00022 34.4 14.4 86 34-132 43-149 (335)
126 KOG1061|consensus 90.6 1.4 3E-05 44.0 8.6 67 36-105 123-189 (734)
127 KOG2611|consensus 90.4 4 8.7E-05 39.0 11.0 130 38-172 15-162 (698)
128 COG5181 HSH155 U2 snRNP splice 90.1 1.7 3.6E-05 42.8 8.4 72 33-105 687-759 (975)
129 KOG2999|consensus 89.4 12 0.00027 36.4 13.5 163 36-214 85-254 (713)
130 PF11701 UNC45-central: Myosin 89.2 0.69 1.5E-05 37.6 4.6 83 17-101 68-155 (157)
131 PF06371 Drf_GBD: Diaphanous G 89.1 0.62 1.3E-05 38.6 4.4 90 153-252 98-187 (187)
132 COG1413 FOG: HEAT repeat [Ener 88.8 3.6 7.9E-05 37.3 9.7 61 77-150 75-135 (335)
133 PF13764 E3_UbLigase_R4: E3 ub 88.8 15 0.00032 37.9 14.5 133 72-215 113-270 (802)
134 PF04078 Rcd1: Cell differenti 88.6 15 0.00033 32.4 12.7 148 52-215 68-229 (262)
135 KOG2025|consensus 87.3 3.4 7.4E-05 41.2 8.6 116 33-159 84-199 (892)
136 KOG4151|consensus 87.1 2.1 4.4E-05 43.0 7.1 147 17-167 564-717 (748)
137 KOG2611|consensus 86.8 3.2 7E-05 39.7 7.8 104 23-130 45-162 (698)
138 KOG0213|consensus 86.3 5.6 0.00012 40.1 9.5 91 14-105 863-954 (1172)
139 KOG1517|consensus 86.1 2.2 4.7E-05 44.3 6.8 125 23-150 543-671 (1387)
140 KOG1062|consensus 85.9 33 0.00071 35.0 14.6 154 43-213 116-273 (866)
141 KOG4464|consensus 85.8 18 0.0004 34.0 12.0 166 37-205 48-233 (532)
142 PF11701 UNC45-central: Myosin 85.7 2.4 5.2E-05 34.4 5.9 95 49-147 58-156 (157)
143 KOG1077|consensus 84.9 9.9 0.00021 38.1 10.4 96 34-142 329-425 (938)
144 PF06025 DUF913: Domain of Unk 84.6 19 0.00042 33.6 12.1 123 36-161 108-244 (379)
145 KOG4535|consensus 84.6 2.3 4.9E-05 40.7 5.7 179 53-251 410-602 (728)
146 PF12031 DUF3518: Domain of un 84.6 2.3 4.9E-05 37.0 5.3 84 135-229 138-228 (257)
147 PF04078 Rcd1: Cell differenti 84.1 5.2 0.00011 35.2 7.4 135 23-160 80-228 (262)
148 KOG3665|consensus 83.5 23 0.0005 36.0 12.8 184 57-249 494-694 (699)
149 KOG2676|consensus 83.4 1.5 3.2E-05 40.2 3.9 63 54-118 376-440 (478)
150 PF05918 API5: Apoptosis inhib 83.0 9.2 0.0002 37.5 9.4 50 36-90 61-110 (556)
151 KOG1078|consensus 82.4 55 0.0012 33.4 14.4 217 13-251 263-531 (865)
152 KOG1832|consensus 82.3 2.9 6.3E-05 42.8 5.7 129 30-161 597-784 (1516)
153 KOG1991|consensus 81.9 71 0.0015 33.4 16.1 202 36-254 464-673 (1010)
154 COG5218 YCG1 Chromosome conden 81.6 9.4 0.0002 37.6 8.6 116 33-159 90-205 (885)
155 KOG4464|consensus 80.6 15 0.00032 34.6 9.3 115 109-231 39-153 (532)
156 KOG4535|consensus 80.2 3 6.6E-05 39.8 4.8 153 36-202 435-602 (728)
157 PF05918 API5: Apoptosis inhib 80.2 19 0.00041 35.4 10.4 81 38-131 27-107 (556)
158 PF14668 RICTOR_V: Rapamycin-i 80.0 12 0.00025 26.3 6.6 66 51-120 4-70 (73)
159 KOG1061|consensus 79.9 7 0.00015 39.2 7.5 67 78-150 123-189 (734)
160 COG5240 SEC21 Vesicle coat com 79.0 58 0.0013 32.2 13.0 28 36-63 305-332 (898)
161 PF08324 PUL: PUL domain; Int 79.0 4.5 9.8E-05 35.6 5.5 130 36-168 108-250 (268)
162 KOG0213|consensus 77.6 3.9 8.5E-05 41.2 4.9 105 39-149 846-953 (1172)
163 PF12460 MMS19_C: RNAPII trans 77.5 45 0.00098 31.5 12.1 111 36-152 273-396 (415)
164 KOG1060|consensus 77.4 91 0.002 32.0 15.0 40 41-87 294-333 (968)
165 cd03569 VHS_Hrs_Vps27p VHS dom 76.9 13 0.00028 29.6 7.1 74 76-150 41-114 (142)
166 cd03568 VHS_STAM VHS domain fa 76.6 13 0.00029 29.6 7.1 73 77-150 38-110 (144)
167 KOG1059|consensus 76.1 94 0.002 31.6 15.8 73 36-117 301-373 (877)
168 COG5181 HSH155 U2 snRNP splice 74.8 5 0.00011 39.6 4.7 103 42-150 654-759 (975)
169 PF01365 RYDR_ITPR: RIH domain 74.5 4.4 9.5E-05 34.3 4.0 102 25-131 34-153 (207)
170 cd03561 VHS VHS domain family; 74.0 20 0.00043 28.0 7.4 72 34-105 37-112 (133)
171 KOG3665|consensus 73.1 15 0.00034 37.2 8.0 93 99-204 494-588 (699)
172 cd03561 VHS VHS domain family; 73.0 25 0.00053 27.5 7.7 73 77-150 38-112 (133)
173 KOG0414|consensus 72.6 15 0.00033 38.8 7.8 142 78-254 921-1066(1251)
174 COG5215 KAP95 Karyopherin (imp 71.1 1.1E+02 0.0025 30.3 14.3 192 38-256 267-483 (858)
175 PF12031 DUF3518: Domain of un 70.2 15 0.00033 32.0 6.2 81 49-132 139-228 (257)
176 PF08167 RIX1: rRNA processing 68.8 23 0.0005 28.8 6.9 86 78-168 27-119 (165)
177 smart00288 VHS Domain present 68.2 27 0.00058 27.4 6.9 72 77-149 38-110 (133)
178 PF05004 IFRD: Interferon-rela 68.1 94 0.002 28.2 17.9 199 36-248 45-253 (309)
179 PF08216 CTNNBL: Catenin-beta- 66.7 9.2 0.0002 29.0 3.7 42 52-94 64-105 (108)
180 cd03567 VHS_GGA VHS domain fam 66.2 34 0.00073 27.2 7.1 72 77-149 39-115 (139)
181 cd03568 VHS_STAM VHS domain fa 65.5 29 0.00063 27.7 6.7 72 34-105 37-110 (144)
182 PF10363 DUF2435: Protein of u 64.3 24 0.00053 25.8 5.6 68 36-105 5-72 (92)
183 KOG1832|consensus 64.0 16 0.00035 37.7 5.8 69 47-118 675-783 (1516)
184 COG5215 KAP95 Karyopherin (imp 63.6 1.6E+02 0.0035 29.3 14.8 130 34-171 133-272 (858)
185 KOG0414|consensus 63.3 27 0.00059 37.1 7.4 97 36-145 962-1059(1251)
186 KOG1243|consensus 62.9 15 0.00031 36.8 5.2 129 14-151 310-438 (690)
187 cd03569 VHS_Hrs_Vps27p VHS dom 62.5 35 0.00075 27.2 6.6 71 34-104 41-113 (142)
188 PF01347 Vitellogenin_N: Lipop 61.2 1.8E+02 0.0038 28.9 13.2 140 78-249 433-586 (618)
189 KOG2259|consensus 60.5 28 0.00061 34.8 6.6 77 71-155 368-444 (823)
190 PF12719 Cnd3: Nuclear condens 60.1 1E+02 0.0023 27.5 10.1 131 36-172 66-207 (298)
191 KOG2274|consensus 59.4 1.4E+02 0.0031 31.1 11.4 167 42-229 458-625 (1005)
192 COG5209 RCD1 Uncharacterized p 59.3 85 0.0018 27.3 8.6 147 52-214 118-278 (315)
193 KOG1824|consensus 58.6 71 0.0015 33.5 9.2 67 38-105 9-76 (1233)
194 KOG2062|consensus 58.1 58 0.0012 33.1 8.3 68 78-156 556-624 (929)
195 PF10363 DUF2435: Protein of u 57.9 46 0.001 24.3 6.1 80 124-226 7-86 (92)
196 cd03567 VHS_GGA VHS domain fam 57.7 50 0.0011 26.2 6.7 71 34-104 38-115 (139)
197 KOG1077|consensus 57.5 1.1E+02 0.0023 31.2 10.0 70 78-152 331-400 (938)
198 KOG1992|consensus 57.5 1.7E+02 0.0037 30.3 11.6 46 35-80 499-544 (960)
199 PF14726 RTTN_N: Rotatin, an a 57.1 78 0.0017 23.5 7.9 66 76-145 30-95 (98)
200 PF08167 RIX1: rRNA processing 56.9 1E+02 0.0023 24.9 10.1 67 36-104 27-96 (165)
201 PF08324 PUL: PUL domain; Int 54.9 1.3E+02 0.0028 26.3 9.6 160 79-254 66-233 (268)
202 PF08569 Mo25: Mo25-like; Int 52.8 1.3E+02 0.0029 27.6 9.5 120 31-154 161-287 (335)
203 PF07814 WAPL: Wings apart-lik 52.7 1.4E+02 0.003 27.7 9.9 92 78-172 23-116 (361)
204 COG5209 RCD1 Uncharacterized p 51.9 38 0.00083 29.4 5.4 89 135-231 114-203 (315)
205 KOG1240|consensus 51.7 3.6E+02 0.0077 29.5 13.8 70 34-104 462-536 (1431)
206 KOG1943|consensus 51.6 3.3E+02 0.0072 29.1 14.6 206 33-262 340-582 (1133)
207 PF00790 VHS: VHS domain; Int 51.1 39 0.00084 26.6 5.1 72 77-149 43-117 (140)
208 PF10274 ParcG: Parkin co-regu 49.9 69 0.0015 26.8 6.5 72 34-105 38-109 (183)
209 smart00288 VHS Domain present 49.9 77 0.0017 24.7 6.6 71 34-104 37-110 (133)
210 PF14663 RasGEF_N_2: Rapamycin 49.8 46 0.00099 25.4 5.2 40 35-75 9-48 (115)
211 PF10521 DUF2454: Protein of u 49.0 1E+02 0.0022 27.5 8.0 70 77-148 120-201 (282)
212 KOG1967|consensus 48.7 47 0.001 34.5 6.3 106 35-144 910-1018(1030)
213 PF14663 RasGEF_N_2: Rapamycin 48.6 50 0.0011 25.2 5.2 38 77-117 9-46 (115)
214 KOG2137|consensus 46.8 1.1E+02 0.0025 30.8 8.5 69 76-149 389-457 (700)
215 PF07923 N1221: N1221-like pro 46.7 52 0.0011 29.5 5.9 56 76-131 60-127 (293)
216 KOG2152|consensus 46.5 3.4E+02 0.0075 27.8 14.0 65 151-215 491-555 (865)
217 KOG1058|consensus 45.1 3.2E+02 0.0068 28.2 11.1 20 41-60 178-198 (948)
218 KOG2062|consensus 44.8 86 0.0019 32.0 7.2 61 44-116 565-626 (929)
219 KOG1248|consensus 43.7 3.9E+02 0.0085 28.9 12.0 102 43-149 663-766 (1176)
220 KOG1248|consensus 43.6 4.6E+02 0.0099 28.4 13.4 59 44-104 707-766 (1176)
221 PF06025 DUF913: Domain of Unk 40.9 3.1E+02 0.0067 25.7 13.6 92 79-172 109-206 (379)
222 KOG2956|consensus 40.8 3.5E+02 0.0075 26.2 13.1 186 48-263 301-489 (516)
223 KOG1824|consensus 40.2 4.2E+02 0.009 28.2 11.3 108 33-147 650-758 (1233)
224 PF07923 N1221: N1221-like pro 39.9 56 0.0012 29.3 4.9 56 32-87 58-127 (293)
225 KOG0567|consensus 39.9 2.4E+02 0.0052 25.2 8.5 55 77-145 219-275 (289)
226 KOG1078|consensus 39.7 4.5E+02 0.0097 27.2 13.2 63 38-105 249-311 (865)
227 KOG2137|consensus 39.7 1.6E+02 0.0035 29.8 8.3 129 33-171 388-517 (700)
228 COG5098 Chromosome condensatio 39.4 1.9E+02 0.0042 29.5 8.6 105 36-148 301-413 (1128)
229 PF12830 Nipped-B_C: Sister ch 38.5 87 0.0019 26.0 5.6 66 35-105 9-74 (187)
230 PF06012 DUF908: Domain of Unk 38.3 2.1E+02 0.0046 26.1 8.5 68 138-214 239-308 (329)
231 KOG2032|consensus 37.8 3.5E+02 0.0076 26.3 9.9 114 30-150 250-371 (533)
232 KOG1058|consensus 37.4 4.9E+02 0.011 27.0 13.6 156 36-226 319-489 (948)
233 PF03130 HEAT_PBS: PBS lyase H 36.5 34 0.00073 18.6 1.9 26 92-130 1-26 (27)
234 PF13251 DUF4042: Domain of un 36.1 2.5E+02 0.0055 23.3 8.8 106 37-151 43-175 (182)
235 PF01347 Vitellogenin_N: Lipop 36.1 2.2E+02 0.0048 28.2 9.0 94 33-147 485-586 (618)
236 KOG0915|consensus 35.7 76 0.0017 34.9 5.7 126 36-172 820-963 (1702)
237 KOG1943|consensus 35.2 6E+02 0.013 27.3 13.3 168 76-262 341-508 (1133)
238 KOG2274|consensus 34.1 5.9E+02 0.013 26.9 14.5 140 30-173 567-719 (1005)
239 PF11707 Npa1: Ribosome 60S bi 33.9 2.6E+02 0.0057 25.4 8.5 104 49-153 129-240 (330)
240 KOG2956|consensus 33.7 4.2E+02 0.0091 25.7 9.6 92 12-106 304-402 (516)
241 PF12231 Rif1_N: Rap1-interact 32.8 4.1E+02 0.0088 24.7 11.9 144 89-254 59-206 (372)
242 PF12460 MMS19_C: RNAPII trans 32.6 4.3E+02 0.0093 24.8 15.7 110 78-206 273-397 (415)
243 COG5098 Chromosome condensatio 31.6 70 0.0015 32.5 4.4 64 81-152 976-1039(1128)
244 PF08216 CTNNBL: Catenin-beta- 31.5 57 0.0012 24.7 3.0 39 95-137 65-103 (108)
245 PF14500 MMS19_N: Dos2-interac 29.9 3.9E+02 0.0084 23.5 11.5 152 80-254 3-155 (262)
246 KOG0915|consensus 29.0 8.8E+02 0.019 27.4 15.2 151 38-206 1002-1163(1702)
247 PF00790 VHS: VHS domain; Int 28.4 1.1E+02 0.0024 24.0 4.4 71 34-104 42-117 (140)
248 PF05004 IFRD: Interferon-rela 28.0 4.5E+02 0.0098 23.7 14.6 133 36-172 88-238 (309)
249 PF06012 DUF908: Domain of Unk 27.7 2.3E+02 0.0051 25.8 7.0 42 64-105 251-297 (329)
250 KOG0301|consensus 27.6 6.7E+02 0.014 25.5 11.2 129 36-171 591-725 (745)
251 PF11707 Npa1: Ribosome 60S bi 27.6 4.7E+02 0.01 23.8 15.5 159 36-204 58-238 (330)
252 COG5330 Uncharacterized protei 27.1 3.5E+02 0.0076 25.2 7.8 69 35-105 8-76 (364)
253 KOG1060|consensus 26.8 7.5E+02 0.016 25.8 15.3 98 36-147 37-134 (968)
254 PF10521 DUF2454: Protein of u 26.4 4.6E+02 0.0099 23.2 11.4 69 36-104 121-202 (282)
255 PF12830 Nipped-B_C: Sister ch 26.1 3.7E+02 0.0081 22.1 12.4 78 78-163 10-88 (187)
256 KOG1967|consensus 25.0 4.5E+02 0.0098 27.8 8.7 132 34-171 867-1004(1030)
257 PF14726 RTTN_N: Rotatin, an a 25.0 2.9E+02 0.0063 20.5 6.4 67 33-100 29-95 (98)
258 KOG1822|consensus 25.0 1E+03 0.022 27.6 11.7 106 36-149 878-987 (2067)
259 PF08569 Mo25: Mo25-like; Int 24.8 5.5E+02 0.012 23.6 17.5 167 46-231 135-311 (335)
260 cd03572 ENTH_epsin_related ENT 24.4 3E+02 0.0065 21.3 6.0 48 53-105 20-67 (122)
261 KOG0567|consensus 24.3 5.2E+02 0.011 23.1 12.0 62 33-105 66-129 (289)
262 cd03565 VHS_Tom1 VHS domain fa 24.3 3.6E+02 0.0078 21.3 7.1 73 77-150 39-115 (141)
263 KOG1020|consensus 24.0 1.1E+03 0.023 26.7 11.8 140 78-250 818-958 (1692)
264 KOG1087|consensus 23.4 2E+02 0.0044 27.8 5.8 68 77-145 39-107 (470)
265 COG5116 RPN2 26S proteasome re 23.4 3.2E+02 0.0069 27.3 7.1 86 44-148 562-648 (926)
266 cd08050 TAF6 TATA Binding Prot 23.2 2.3E+02 0.0049 26.1 6.0 109 36-148 212-338 (343)
267 KOG2199|consensus 23.1 3E+02 0.0065 26.0 6.6 74 76-150 45-118 (462)
268 KOG0211|consensus 22.9 7.1E+02 0.015 25.8 9.8 203 35-251 83-304 (759)
269 PF12530 DUF3730: Protein of u 22.8 4.9E+02 0.011 22.3 14.6 194 36-261 2-222 (234)
270 KOG2025|consensus 22.4 8.7E+02 0.019 25.1 10.5 72 76-151 85-156 (892)
271 COG5116 RPN2 26S proteasome re 22.1 2.7E+02 0.0058 27.8 6.3 62 76-148 551-613 (926)
272 PF04821 TIMELESS: Timeless pr 21.9 5.5E+02 0.012 22.6 11.3 63 88-150 55-149 (266)
273 PLN03205 ATR interacting prote 21.5 2.8E+02 0.0061 26.4 6.1 184 36-229 325-547 (652)
274 COG5656 SXM1 Importin, protein 21.0 9.5E+02 0.021 25.0 13.2 133 33-172 407-549 (970)
275 smart00638 LPD_N Lipoprotein N 20.9 8E+02 0.017 24.0 11.2 140 78-249 395-542 (574)
276 PF06685 DUF1186: Protein of u 20.5 5.9E+02 0.013 22.4 8.3 43 33-75 110-154 (249)
277 KOG1240|consensus 20.3 2.4E+02 0.0053 30.6 6.0 70 76-150 656-725 (1431)
No 1
>KOG1048|consensus
Probab=100.00 E-value=4.3e-34 Score=273.23 Aligned_cols=256 Identities=51% Similarity=0.840 Sum_probs=234.8
Q ss_pred ccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCCh
Q psy15592 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQND 110 (294)
Q Consensus 31 ~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~ 110 (294)
+..--++..+.+|.+.++.++.+|+..+.++||.+.+.|..+.+.|||+.||.+|.+.+.+++..||++|+||++++.++
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~ 309 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTD 309 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCc
Confidence 56667899999999999999999999999999999999999999999999999999999999999999999999985566
Q ss_pred hhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCC-ccchhh
Q psy15592 111 ENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAG-ETCWST 189 (294)
Q Consensus 111 ~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~-~~~~~~ 189 (294)
+||.+|.+.+||+.++++|+...|.++++.++++||||++++..|..|++..+-.+-..++.|++||..+... ...+.+
T Consensus 310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccce
Confidence 7999999999999999999987799999999999999999999999999999999999999999999866443 556788
Q ss_pred HHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCccccCCCCCCCCCcc
Q psy15592 190 IFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQEVEDPNYDKHPVVS 269 (294)
Q Consensus 190 v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 269 (294)
+++++++||+|+++.+.+.|+.|+++.|+|+.|+.++.+..+.++.|.+.+|+|+|+|+||+|+. ++|+|+.|.+..+.
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl-~~Evp~~~~~~~~~ 468 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRL-EAEVPPKYRQVLAN 468 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchh-hhhcCHhhhhHhhc
Confidence 99999999999999888999999999999999999999999999999999999999999999999 69999999888888
Q ss_pred cccCCCCCCC-CCCcccCC
Q psy15592 270 QSRTSPQAKG-KSNIWNRP 287 (294)
Q Consensus 270 ~~~~~~~~~~-~~~~~~~~ 287 (294)
..|.-...+. .+.|||.+
T Consensus 469 ~~~~~~~~~~~~~~gcf~~ 487 (717)
T KOG1048|consen 469 IARLPGVGPPAESVGCFGF 487 (717)
T ss_pred ccccccCCCcccccccccc
Confidence 8766555441 47778754
No 2
>KOG0166|consensus
Probab=99.91 E-value=5.8e-23 Score=191.68 Aligned_cols=224 Identities=19% Similarity=0.263 Sum_probs=196.5
Q ss_pred hhHHHhhhcccc---ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC-
Q psy15592 11 SQEEFYSPSLNK---KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG- 86 (294)
Q Consensus 11 ~q~~al~~l~~l---~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~- 86 (294)
.|.+|.++|.|+ ..+....++++|++|.++.++.+++..++++|+|+|+|++.+.+..|..+...|++++|+.++.
T Consensus 126 lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~ 205 (514)
T KOG0166|consen 126 LQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK 205 (514)
T ss_pred HHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc
Confidence 399999999999 4577788889999999999999999999999999999999989999999999999999988886
Q ss_pred ------------------------------------------CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHH
Q psy15592 87 ------------------------------------------HESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPL 124 (294)
Q Consensus 87 ------------------------------------------s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~ 124 (294)
+.|+++...|||+|++|+.| ..+....+++.|.++.
T Consensus 206 ~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg--~ne~iq~vi~~gvv~~ 283 (514)
T KOG0166|consen 206 SDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG--SNEKIQMVIDAGVVPR 283 (514)
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHccchHH
Confidence 45678888888999999864 7777888899999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccch-hhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhc
Q psy15592 125 LINLLRKTADAEVKELVTGVLWNLSSCED-LKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS 203 (294)
Q Consensus 125 Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~-~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~ 203 (294)
|+.+|.. .+..++..++.++.|++.+.+ ..+.+++.|+++.+..++... . ...+.+.|+|+++|++.
T Consensus 284 LV~lL~~-~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s---~--------~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 284 LVDLLGH-SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS---P--------KESIKKEACWTISNITA 351 (514)
T ss_pred HHHHHcC-CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC---c--------chhHHHHHHHHHHHhhc
Confidence 9999998 478899999999999988764 466778999999999999421 1 12388999999999999
Q ss_pred cCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 204 AGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 204 ~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
++.+..+.+.+ .|++|.|+++++++ +.+++..|++++.|++...-
T Consensus 352 G~~~qiqaVid-a~l~p~Li~~l~~~------ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 352 GNQEQIQAVID-ANLIPVLINLLQTA------EFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred CCHHHHHHHHH-cccHHHHHHHHhcc------chHHHHHHHHHHHhhcccCC
Confidence 99999999999 69999999999754 35899999999999998873
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.89 E-value=8.6e-22 Score=207.33 Aligned_cols=230 Identities=19% Similarity=0.178 Sum_probs=192.9
Q ss_pred cchhHHHhhhcccc--ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC--cccHHH-HHhcCChHHHHH
Q psy15592 9 TGSQEEFYSPSLNK--KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMD--DPNKQK-TRSLGGIPPLVK 83 (294)
Q Consensus 9 ~~~q~~al~~l~~l--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~--~~~k~~-i~~~g~i~~Lv~ 83 (294)
...|+.+++.|.++ ++++|..|...|++++|+++|++++++.|+.|+.+|++++..+ ++++.. ++..|+||+|+.
T Consensus 72 ~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~ 151 (2102)
T PLN03200 72 LGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWD 151 (2102)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHH
Confidence 34788888888888 6788999999999999999999999999999999999999754 555645 457899999999
Q ss_pred hhCCCC---HHHHHHHHHHHHHhhcCCCChhhH-HHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHH
Q psy15592 84 LLGHES---PDVFRNACGALRNLSYGRQNDENK-RAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSI 158 (294)
Q Consensus 84 lL~s~~---~~v~~~a~~aL~nLs~~~~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i 158 (294)
+|++++ ..++..++.+|+||+. +.+++ ..+++.|+++.|+.+|++ .++..+..++++|.+++.. ++.+..+
T Consensus 152 lL~~gsk~d~~L~~~Av~AL~nLs~---~~en~~~~IIeaGaVp~LV~LLsS-~d~~lQ~eAa~aLa~Lass~ee~~~aV 227 (2102)
T PLN03200 152 QLQPGNKQDKVVEGLLTGALRNLCG---STDGFWSATLEAGGVDILVKLLSS-GNSDAQANAASLLARLMMAFESSISKV 227 (2102)
T ss_pred HHhCCchhhHHHHHHHHHHHHHHhc---CccchHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 999874 3467888999999997 55555 567899999999999988 5899999999999888765 6799999
Q ss_pred HhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhh---cCC
Q psy15592 159 IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEK---SNI 235 (294)
Q Consensus 159 ~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~---~~~ 235 (294)
++.|+++.++.++.. +. +..++++|+++|+||+.+++++|+.+++ .|+++.|++++.+..+. ++.
T Consensus 228 IeaGaVP~LV~LL~s--g~---------~~~VRE~AA~AL~nLAs~s~e~r~~Iv~-aGgIp~LI~lL~sp~~e~~~~~~ 295 (2102)
T PLN03200 228 LDAGAVKQLLKLLGQ--GN---------EVSVRAEAAGALEALSSQSKEAKQAIAD-AGGIPALINATVAPSKEFMQGEF 295 (2102)
T ss_pred HHCCCHHHHHHHHcc--CC---------ChHHHHHHHHHHHHHhcCCHHHHHHHHH-CCCHHHHHHHHhCcchhhhcccc
Confidence 999999999999941 21 1358999999999999999999999999 69999999999743321 123
Q ss_pred CcchHHHHHHHHHHhccCC
Q psy15592 236 GNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 236 ~~~~~e~a~~~L~nLs~~~ 254 (294)
....+++|+++|.|||...
T Consensus 296 ~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 296 AQALQENAMGALANICGGM 314 (2102)
T ss_pred chHHHHHHHHHHHHHhCCc
Confidence 3457999999999999865
No 4
>KOG4224|consensus
Probab=99.89 E-value=5.9e-22 Score=175.37 Aligned_cols=222 Identities=22% Similarity=0.252 Sum_probs=195.4
Q ss_pred chhHHHhhhcccc--ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcC--ChHHHHHhh
Q psy15592 10 GSQEEFYSPSLNK--KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLG--GIPPLVKLL 85 (294)
Q Consensus 10 ~~q~~al~~l~~l--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g--~i~~Lv~lL 85 (294)
+.|-.+..+|+++ ..+||+.++.+|++|.||.+++++++++|.+++.+|.|++ .+..+|+.+.+.+ .+|.|+.++
T Consensus 182 rvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIa-Vd~~~Rk~Laqaep~lv~~Lv~Lm 260 (550)
T KOG4224|consen 182 RVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIA-VDRRARKILAQAEPKLVPALVDLM 260 (550)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhh-hhHHHHHHHHhcccchHHHHHHHH
Confidence 5677777889988 5788889999999999999999999999999999999999 5778999999988 899999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHH
Q psy15592 86 GHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQV 165 (294)
Q Consensus 86 ~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~ 165 (294)
.+++++++..|.-+|+||+. +.+++..++++|++|.++++|++. ........+.|++|++..+-|..-|++.|.+.
T Consensus 261 d~~s~kvkcqA~lALrnlas---dt~Yq~eiv~ag~lP~lv~Llqs~-~~plilasVaCIrnisihplNe~lI~dagfl~ 336 (550)
T KOG4224|consen 261 DDGSDKVKCQAGLALRNLAS---DTEYQREIVEAGSLPLLVELLQSP-MGPLILASVACIRNISIHPLNEVLIADAGFLR 336 (550)
T ss_pred hCCChHHHHHHHHHHhhhcc---cchhhhHHHhcCCchHHHHHHhCc-chhHHHHHHHHHhhcccccCcccceecccchh
Confidence 99999999999999999998 788999999999999999999884 66666677889999999999999999999998
Q ss_pred HHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHH
Q psy15592 166 VVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVC 245 (294)
Q Consensus 166 ~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~ 245 (294)
.|+.++.- + ++ +.++-+|...||||+...++++..+++ .|+|+.|.+++..+ +.++++..-+
T Consensus 337 pLVrlL~~--~-dn--------EeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~------pvsvqseisa 398 (550)
T KOG4224|consen 337 PLVRLLRA--G-DN--------EEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDG------PVSVQSEISA 398 (550)
T ss_pred HHHHHHhc--C-Cc--------hhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcC------ChhHHHHHHH
Confidence 88889841 1 11 348889999999999988899999999 79999999999643 3578888777
Q ss_pred HHHHhccCC
Q psy15592 246 ILRNLSFRC 254 (294)
Q Consensus 246 ~L~nLs~~~ 254 (294)
++.-|++..
T Consensus 399 c~a~Lal~d 407 (550)
T KOG4224|consen 399 CIAQLALND 407 (550)
T ss_pred HHHHHHhcc
Confidence 777777764
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.88 E-value=7.9e-22 Score=173.27 Aligned_cols=221 Identities=19% Similarity=0.225 Sum_probs=189.1
Q ss_pred hHHHhhhcccc---ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC--
Q psy15592 12 QEEFYSPSLNK---KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG-- 86 (294)
Q Consensus 12 q~~al~~l~~l---~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~-- 86 (294)
|.+|.++|.|+ .......++++|++|.++.+|.+++.++++++.|+|.|++-+++.+|..+.+.|++.+++.++.
T Consensus 132 qfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss 211 (526)
T COG5064 132 QFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS 211 (526)
T ss_pred HHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc
Confidence 45667899988 3455567889999999999999999999999999999999888889999999999999998885
Q ss_pred ------------------------------------------CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHH
Q psy15592 87 ------------------------------------------HESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPL 124 (294)
Q Consensus 87 ------------------------------------------s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~ 124 (294)
+.++++...|+|++..|+-| ..+...++++.|..+.
T Consensus 212 ~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg--~~E~i~avld~g~~~R 289 (526)
T COG5064 212 AIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG--PNEKIQAVLDVGIPGR 289 (526)
T ss_pred cchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC--cHHHHHHHHhcCCcHH
Confidence 34567777778888888854 6666788889999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchh-hHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhc
Q psy15592 125 LINLLRKTADAEVKELVTGVLWNLSSCEDL-KKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS 203 (294)
Q Consensus 125 Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~-r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~ 203 (294)
|+++|.+ ++..++..++....|+.+..+. .+.++++|+++.+..+|.. + ...+.+.+||.++|++.
T Consensus 290 LvElLs~-~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~-----~-------ke~irKEaCWTiSNITA 356 (526)
T COG5064 290 LVELLSH-ESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSS-----P-------KENIRKEACWTISNITA 356 (526)
T ss_pred HHHHhcC-ccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcC-----h-------hhhhhhhhheeeccccc
Confidence 9999988 5889999999999999886644 5677799999999988841 1 13489999999999999
Q ss_pred cCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 204 AGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 204 ~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
.+.+..+.+.+ .+++|+|+++|.+. +-+++..||+++.|.+++.
T Consensus 357 Gnteqiqavid-~nliPpLi~lls~a------e~k~kKEACWAisNatsgg 400 (526)
T COG5064 357 GNTEQIQAVID-ANLIPPLIHLLSSA------EYKIKKEACWAISNATSGG 400 (526)
T ss_pred CCHHHHHHHHh-cccchHHHHHHHHH------HHHHHHHHHHHHHhhhccc
Confidence 99999999999 69999999999754 2589999999999999998
No 6
>KOG4224|consensus
Probab=99.88 E-value=4.2e-22 Score=176.31 Aligned_cols=220 Identities=20% Similarity=0.244 Sum_probs=190.3
Q ss_pred hhHHHhhhcccc--ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC
Q psy15592 11 SQEEFYSPSLNK--KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE 88 (294)
Q Consensus 11 ~q~~al~~l~~l--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~ 88 (294)
+|-.++.-+.|+ .+++|..|...|++.++.++-++.+..+|.++..+|.|++ +..++|..++..||+|.||.+++++
T Consensus 142 vqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~ 220 (550)
T KOG4224|consen 142 VQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSG 220 (550)
T ss_pred EEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccC
Confidence 344455444444 3789999999999999999888999999999999999999 4689999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCChhhHHHHHhcC--ChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHH
Q psy15592 89 SPDVFRNACGALRNLSYGRQNDENKRAIKNAG--GIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVV 166 (294)
Q Consensus 89 ~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g--~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~ 166 (294)
++.++..|+.++.|++. +..+|..+.+.+ .++.|++++.++ ++.++-.+.-+|+||++..++...|++.|.+|.
T Consensus 221 d~dvqyycttaisnIaV---d~~~Rk~Laqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~ 296 (550)
T KOG4224|consen 221 DLDVQYYCTTAISNIAV---DRRARKILAQAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIVEAGSLPL 296 (550)
T ss_pred ChhHHHHHHHHhhhhhh---hHHHHHHHHhcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHHhcCCchH
Confidence 99999999999999998 788999999888 999999999985 889999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHH
Q psy15592 167 VNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCI 246 (294)
Q Consensus 167 L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~ 246 (294)
+++++....+ ...-..+.|++|++-++- +...+.+ .|++.+||.+|+. +.+++++-+|+.+
T Consensus 297 lv~Llqs~~~------------plilasVaCIrnisihpl-Ne~lI~d-agfl~pLVrlL~~-----~dnEeiqchAvst 357 (550)
T KOG4224|consen 297 LVELLQSPMG------------PLILASVACIRNISIHPL-NEVLIAD-AGFLRPLVRLLRA-----GDNEEIQCHAVST 357 (550)
T ss_pred HHHHHhCcch------------hHHHHHHHHHhhcccccC-cccceec-ccchhHHHHHHhc-----CCchhhhhhHHHH
Confidence 9999942211 144566679999998763 5567777 7999999999963 4456899999999
Q ss_pred HHHhccCC
Q psy15592 247 LRNLSFRC 254 (294)
Q Consensus 247 L~nLs~~~ 254 (294)
||||+...
T Consensus 358 LrnLAass 365 (550)
T KOG4224|consen 358 LRNLAASS 365 (550)
T ss_pred HHHHhhhh
Confidence 99998744
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.88 E-value=2e-21 Score=204.56 Aligned_cols=227 Identities=24% Similarity=0.247 Sum_probs=189.9
Q ss_pred chhHHHhhhcccc---cccccccccc-CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhh
Q psy15592 10 GSQEEFYSPSLNK---KCRNSSLRWR-DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL 85 (294)
Q Consensus 10 ~~q~~al~~l~~l---~~~~~~~i~~-~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL 85 (294)
..|+.++..|..+ ++++|..+.+ .|++|.|+.+|+++++.++..|+.+|.+++. ++++|..|...|+||+|+.+|
T Consensus 30 ~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~-~e~nk~~Iv~~GaIppLV~LL 108 (2102)
T PLN03200 30 QEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCK-EEDLRVKVLLGGCIPPLLSLL 108 (2102)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHHHH
Confidence 4566677666655 5778888875 8999999999999999999999999999995 589999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCChhhHHH-HHhcCChHHHHHHhccCC--CHHHHHHHHHHHHHhcccchhh-HHHHhh
Q psy15592 86 GHESPDVFRNACGALRNLSYGRQNDENKRA-IKNAGGIPLLINLLRKTA--DAEVKELVTGVLWNLSSCEDLK-KSIIDD 161 (294)
Q Consensus 86 ~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~-i~~~g~i~~Lv~lL~~~~--~~~~~~~a~~~L~nLs~~~~~r-~~i~~~ 161 (294)
++++++.+..|+++|++|+.+..++.++.. ++..|++|+|+.+++++. +..+++.++.+|+||+.+++++ ..+++.
T Consensus 109 ~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIea 188 (2102)
T PLN03200 109 KSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEA 188 (2102)
T ss_pred HCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHc
Confidence 999999999999999999983001555544 568999999999998742 3346778899999999998876 466899
Q ss_pred ChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHH
Q psy15592 162 GLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVE 241 (294)
Q Consensus 162 g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e 241 (294)
|+++.++.++. ++ +..++.+|+++|.+++.+.++.++.+.+ .|+||.|+++|+++ .+..+++
T Consensus 189 GaVp~LV~LLs--S~----------d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg-----~~~~VRE 250 (2102)
T PLN03200 189 GGVDILVKLLS--SG----------NSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQG-----NEVSVRA 250 (2102)
T ss_pred CCHHHHHHHHc--CC----------CHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccC-----CChHHHH
Confidence 99999999994 11 2468899999999999887778999998 79999999999542 2358999
Q ss_pred HHHHHHHHhccCCc
Q psy15592 242 NCVCILRNLSFRCQ 255 (294)
Q Consensus 242 ~a~~~L~nLs~~~~ 255 (294)
+|+++|+||+.+.+
T Consensus 251 ~AA~AL~nLAs~s~ 264 (2102)
T PLN03200 251 EAAGALEALSSQSK 264 (2102)
T ss_pred HHHHHHHHHhcCCH
Confidence 99999999999753
No 8
>KOG2122|consensus
Probab=99.86 E-value=1.9e-22 Score=201.05 Aligned_cols=252 Identities=23% Similarity=0.258 Sum_probs=209.7
Q ss_pred HHhhhcccc--ccccccccccCCCHHHHHHhhcC-----C-------CHHHHHHHHHHHHHhhcCCcccHHHHHhc-CCh
Q psy15592 14 EFYSPSLNK--KCRNSSLRWRDPNLTEVISFLSN-----P-------NNVIKANAAAYLQHLCYMDDPNKQKTRSL-GGI 78 (294)
Q Consensus 14 ~al~~l~~l--~~~~~~~i~~~g~i~~Lv~lL~s-----~-------~~~~~~~a~~~L~nL~~~~~~~k~~i~~~-g~i 78 (294)
.|+.+|+.+ ++++|..+.+.|+++++.+||.- + +-.+|.+|..+|.||+|.+..||..+... |.+
T Consensus 317 aA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfM 396 (2195)
T KOG2122|consen 317 AALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFM 396 (2195)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHH
Confidence 455667655 89999999999999999998852 1 23679999999999999999999999876 668
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc-cchhhHH
Q psy15592 79 PPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKS 157 (294)
Q Consensus 79 ~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~r~~ 157 (294)
..+|..|.+..+++...-+++|+||+|. .+..-|..+.+.|.+..|...--....+...+.++.+||||+. +.+||..
T Consensus 397 eavVAQL~s~peeL~QV~AsvLRNLSWR-AD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~ 475 (2195)
T KOG2122|consen 397 EAVVAQLISAPEELLQVYASVLRNLSWR-ADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE 475 (2195)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhcccc-ccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence 9999999999999999999999999994 4555588888999999999876554566778899999999976 6799999
Q ss_pred HHh-hChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhc---cCHHHHHHHHhhcCcHHHHHHHHHHhHhhc
Q psy15592 158 IID-DGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS---AGEYARKKLRECEGLIDSLLYVVKSAIEKS 233 (294)
Q Consensus 158 i~~-~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~---~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~ 233 (294)
|.. .|++.+|+.+|. +.+..+ ...|++++.|+|+|.++ ..+++|+.+++ .+++..|+++|++++
T Consensus 476 iCaVDGALaFLVg~LS-Y~~qs~-------tLaIIEsaGGILRNVSS~IAt~E~yRQILR~-~NCLq~LLQ~LKS~S--- 543 (2195)
T KOG2122|consen 476 ICAVDGALAFLVGTLS-YEGQSN-------TLAIIESAGGILRNVSSLIATCEDYRQILRR-HNCLQTLLQHLKSHS--- 543 (2195)
T ss_pred hhcccchHHHHHhhcc-ccCCcc-------hhhhhhcCccHHHHHHhHhhccchHHHHHHH-hhHHHHHHHHhhhcc---
Confidence 997 799999999996 433221 14589999999999974 36689999999 499999999998775
Q ss_pred CCCcchHHHHHHHHHHhccCCccccCCCCCCCCCcccccCCCCCCCCCC
Q psy15592 234 NIGNKSVENCVCILRNLSFRCQEVEDPNYDKHPVVSQSRTSPQAKGKSN 282 (294)
Q Consensus 234 ~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (294)
-.++.++|++||||+.+.. .+|.-+|-..+.+|+|+.---+.|-|
T Consensus 544 ---LTiVSNaCGTLWNLSAR~p-~DQq~LwD~gAv~mLrnLIhSKhkMI 588 (2195)
T KOG2122|consen 544 ---LTIVSNACGTLWNLSARSP-EDQQMLWDDGAVPMLRNLIHSKHKMI 588 (2195)
T ss_pred ---eEEeecchhhhhhhhcCCH-HHHHHHHhcccHHHHHHHHhhhhhhh
Confidence 5899999999999999994 44445599999999998776565544
No 9
>KOG0166|consensus
Probab=99.81 E-value=1e-18 Score=163.33 Aligned_cols=206 Identities=16% Similarity=0.193 Sum_probs=177.9
Q ss_pred ccccCCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy15592 29 LRWRDPNLTEVISFLS-NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGR 107 (294)
Q Consensus 29 ~i~~~g~i~~Lv~lL~-s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~ 107 (294)
.+...|.++.+|++|. ..++.++..|+|+|.|++....+....+++.|++|.++.++.+++..+++.|.|+|.|++.+
T Consensus 104 ~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagd- 182 (514)
T KOG0166|consen 104 EVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGD- 182 (514)
T ss_pred HHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccC-
Confidence 3345699999999997 55699999999999999988888888999999999999999999999999999999999974
Q ss_pred CChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHh-hChHHHHHHhhccCCCCCCCCCCccc
Q psy15592 108 QNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIID-DGLQVVVNHIIIPHSGWDPVSAGETC 186 (294)
Q Consensus 108 ~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~-~g~i~~L~~ll~~~s~~~~~~~~~~~ 186 (294)
.+..|..++++|++++|+.++.......+.++++|+|.||+.+.+--..+.. ..++|.|..++. +.
T Consensus 183 -s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~------------~~ 249 (514)
T KOG0166|consen 183 -SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLH------------ST 249 (514)
T ss_pred -ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHh------------cC
Confidence 8899999999999999999998854457899999999999987643333333 567788888883 23
Q ss_pred hhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 187 WSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 187 ~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
|..+...|+|+++.|+.++.+..+.+.+ .|.++.|+++|. +++..++..|+.++.|++.+.+
T Consensus 250 D~~Vl~Da~WAlsyLsdg~ne~iq~vi~-~gvv~~LV~lL~------~~~~~v~~PaLRaiGNIvtG~d 311 (514)
T KOG0166|consen 250 DEEVLTDACWALSYLTDGSNEKIQMVID-AGVVPRLVDLLG------HSSPKVVTPALRAIGNIVTGSD 311 (514)
T ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHH-ccchHHHHHHHc------CCCcccccHHHhhccceeeccH
Confidence 4679999999999999998889999999 699999999995 3446888999999999888873
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.76 E-value=3.6e-17 Score=160.25 Aligned_cols=216 Identities=21% Similarity=0.226 Sum_probs=178.7
Q ss_pred chhHHHh----hhcccc--ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHH
Q psy15592 10 GSQEEFY----SPSLNK--KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVK 83 (294)
Q Consensus 10 ~~q~~al----~~l~~l--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~ 83 (294)
.-||.-+ ..|+|+ +..+...+++.|+++.|+++|.+++.++...++.+|.+|+. ..+||..+.+.|.+++|++
T Consensus 260 ~kQeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~k 338 (708)
T PF05804_consen 260 RKQEQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLK 338 (708)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHH
Confidence 3455555 356677 56777788999999999999999999999999999999995 6789999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhCh
Q psy15592 84 LLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGL 163 (294)
Q Consensus 84 lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~ 163 (294)
++.+++.+++..++++|+|||+ ++..|..+++.|.+|.|+.+|.+. ..+..++.+|++||..++.|..+...+.
T Consensus 339 Ll~s~~~~l~~~aLrlL~NLSf---d~~~R~~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~Tdc 412 (708)
T PF05804_consen 339 LLPSENEDLVNVALRLLFNLSF---DPELRSQMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAYTDC 412 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHhCc---CHHHHHHHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhhcch
Confidence 9999999999999999999998 899999999999999999999763 4566799999999999999999998899
Q ss_pred HHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHH
Q psy15592 164 QVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENC 243 (294)
Q Consensus 164 i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a 243 (294)
++.+++++...++ ..+.......+.|||.+.. +.+.|.+ .|+++.|+...-... | .-.
T Consensus 413 Ip~L~~~Ll~~~~-----------~~v~~eliaL~iNLa~~~r-naqlm~~-g~gL~~L~~ra~~~~-----D----~lL 470 (708)
T PF05804_consen 413 IPQLMQMLLENSE-----------EEVQLELIALLINLALNKR-NAQLMCE-GNGLQSLMKRALKTR-----D----PLL 470 (708)
T ss_pred HHHHHHHHHhCCC-----------ccccHHHHHHHHHHhcCHH-HHHHHHh-cCcHHHHHHHHHhcc-----c----HHH
Confidence 9999988843211 1244456789999999774 6678887 688888887763321 1 123
Q ss_pred HHHHHHhccCC
Q psy15592 244 VCILRNLSFRC 254 (294)
Q Consensus 244 ~~~L~nLs~~~ 254 (294)
+..+||+|.|.
T Consensus 471 lKlIRNiS~h~ 481 (708)
T PF05804_consen 471 LKLIRNISQHD 481 (708)
T ss_pred HHHHHHHHhcC
Confidence 56889998875
No 11
>KOG2122|consensus
Probab=99.76 E-value=9.1e-18 Score=168.08 Aligned_cols=218 Identities=23% Similarity=0.265 Sum_probs=185.1
Q ss_pred hhhcccc---ccccccccccC-CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc-cHHHHHhcCChHHHHH-hhCCCC
Q psy15592 16 YSPSLNK---KCRNSSLRWRD-PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDP-NKQKTRSLGGIPPLVK-LLGHES 89 (294)
Q Consensus 16 l~~l~~l---~~~~~~~i~~~-g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~-~k~~i~~~g~i~~Lv~-lL~s~~ 89 (294)
.++|.|| +..||..++.. |+|+.+|..|.+..+++....+.+|+||+|..+. .|..+.+.|-+.+|.. .|+...
T Consensus 372 ~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~k 451 (2195)
T KOG2122|consen 372 GMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKK 451 (2195)
T ss_pred HHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcc
Confidence 3788888 67899888876 7899999999999999999999999999998555 4555567788988887 556666
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHh-cCChHHHHHHhcc---CCCHHHHHHHHHHHHHhc----ccchhhHHHHhh
Q psy15592 90 PDVFRNACGALRNLSYGRQNDENKRAIKN-AGGIPLLINLLRK---TADAEVKELVTGVLWNLS----SCEDLKKSIIDD 161 (294)
Q Consensus 90 ~~v~~~a~~aL~nLs~~~~~~~~k~~i~~-~g~i~~Lv~lL~~---~~~~~~~~~a~~~L~nLs----~~~~~r~~i~~~ 161 (294)
+......+.+||||+.| ..+||..|.. -|++..|+.+|.- +....+.+.+-++|+|++ .++++|+.+.+.
T Consensus 452 EsTLKavLSALWNLSAH--cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~ 529 (2195)
T KOG2122|consen 452 ESTLKAVLSALWNLSAH--CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH 529 (2195)
T ss_pred cchHHHHHHHHhhhhhc--ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh
Confidence 67788889999999986 8999999985 6899999999954 245678899999999985 478889999999
Q ss_pred ChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHH
Q psy15592 162 GLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVE 241 (294)
Q Consensus 162 g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e 241 (294)
..+..|+++|+.++ .+|+.|+||+||||+..+++-++.+++ .|+++.|..++++.+ ..+.+
T Consensus 530 NCLq~LLQ~LKS~S------------LTiVSNaCGTLWNLSAR~p~DQq~LwD-~gAv~mLrnLIhSKh------kMIa~ 590 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHS------------LTIVSNACGTLWNLSARSPEDQQMLWD-DGAVPMLRNLIHSKH------KMIAM 590 (2195)
T ss_pred hHHHHHHHHhhhcc------------eEEeecchhhhhhhhcCCHHHHHHHHh-cccHHHHHHHHhhhh------hhhhh
Confidence 99999999985432 458999999999999999999999999 699999999998665 37899
Q ss_pred HHHHHHHHhccCC
Q psy15592 242 NCVCILRNLSFRC 254 (294)
Q Consensus 242 ~a~~~L~nLs~~~ 254 (294)
.++.+|+||-.+.
T Consensus 591 GSaaALrNLln~R 603 (2195)
T KOG2122|consen 591 GSAAALRNLLNFR 603 (2195)
T ss_pred hHHHHHHHHhcCC
Confidence 9999999987554
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.71 E-value=4.1e-16 Score=152.85 Aligned_cols=203 Identities=22% Similarity=0.238 Sum_probs=169.4
Q ss_pred ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy15592 23 KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102 (294)
Q Consensus 23 ~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~n 102 (294)
..+||..+.+.|.++.|++++.+++.+++..+.+.|.||+| +++.|..++..|.||.|+.+|.++ ..+..++..|++
T Consensus 320 ~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~ 396 (708)
T PF05804_consen 320 FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYN 396 (708)
T ss_pred CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHH
Confidence 57899999999999999999999999999999999999997 578999999999999999999865 455678999999
Q ss_pred hhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCC
Q psy15592 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSA 182 (294)
Q Consensus 103 Ls~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~ 182 (294)
||. ++++|..+...++++.+++++-.+++..+...+++++.|||.++.+.+.+.+.|+++.|+..... ..
T Consensus 397 LS~---dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~--~~----- 466 (708)
T PF05804_consen 397 LSM---DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALK--TR----- 466 (708)
T ss_pred hcc---CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh--cc-----
Confidence 998 88999999999999999998877667778888999999999999999999987777777655521 11
Q ss_pred CccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 183 GETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 183 ~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
++.+ ..++||+|.++...+..+. +.+..|+.++... .+++..-.|+++|.||+...
T Consensus 467 ----D~lL----lKlIRNiS~h~~~~k~~f~---~~i~~L~~~v~~~-----~~ee~~vE~LGiLaNL~~~~ 522 (708)
T PF05804_consen 467 ----DPLL----LKLIRNISQHDGPLKELFV---DFIGDLAKIVSSG-----DSEEFVVECLGILANLTIPD 522 (708)
T ss_pred ----cHHH----HHHHHHHHhcCchHHHHHH---HHHHHHHHHhhcC-----CcHHHHHHHHHHHHhcccCC
Confidence 1222 3699999999866666554 4588888887532 24688899999999998653
No 13
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.70 E-value=2e-16 Score=139.53 Aligned_cols=218 Identities=13% Similarity=0.132 Sum_probs=173.1
Q ss_pred cccccCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy15592 28 SLRWRDPNLTEVISFLSN-PNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYG 106 (294)
Q Consensus 28 ~~i~~~g~i~~Lv~lL~s-~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~ 106 (294)
..+..+|.+|.+|++|++ ...-.+..|+|+|.|++.....-..-+++.|++|.++++|.+.+.+++..+.|+|.|++.
T Consensus 108 q~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAG- 186 (526)
T COG5064 108 QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAG- 186 (526)
T ss_pred hhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccC-
Confidence 456789999999999954 444567899999999996554444455789999999999999999999999999999997
Q ss_pred CCChhhHHHHHhcCChHHHHHHhccC-CCHHHHHHHHHHHHHhcccchhhHHHHh-hChHHHHHHhhccCCCCCCCCCCc
Q psy15592 107 RQNDENKRAIKNAGGIPLLINLLRKT-ADAEVKELVTGVLWNLSSCEDLKKSIID-DGLQVVVNHIIIPHSGWDPVSAGE 184 (294)
Q Consensus 107 ~~~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~nLs~~~~~r~~i~~-~g~i~~L~~ll~~~s~~~~~~~~~ 184 (294)
+++..|..+.++|++++++.++.++ .+..+.++++|+|.||+...+-...--. ...+|.|.+++ ++
T Consensus 187 -DS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi--ys--------- 254 (526)
T COG5064 187 -DSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI--YS--------- 254 (526)
T ss_pred -CchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH--hh---------
Confidence 3888999999999999999999873 3568899999999999875432221111 34567888888 32
Q ss_pred cchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCccccCCCCCC
Q psy15592 185 TCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQEVEDPNYDK 264 (294)
Q Consensus 185 ~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~ 264 (294)
.|..+...|+|+++-|+..+.+..+++.+ .|..++|+++|.+ .+.+++..++..+.|+..+.. .+....-.
T Consensus 255 -~D~evlvDA~WAiSYlsDg~~E~i~avld-~g~~~RLvElLs~------~sa~iqtPalR~vGNIVTG~D-~QTqviI~ 325 (526)
T COG5064 255 -RDPEVLVDACWAISYLSDGPNEKIQAVLD-VGIPGRLVELLSH------ESAKIQTPALRSVGNIVTGSD-DQTQVIIN 325 (526)
T ss_pred -cCHHHHHHHHHHHHHhccCcHHHHHHHHh-cCCcHHHHHHhcC------ccccccCHHHHhhcCeeecCc-cceehhee
Confidence 23568889999999999998889999999 6999999999954 346899999999999998873 43333333
Q ss_pred CCC
Q psy15592 265 HPV 267 (294)
Q Consensus 265 ~~~ 267 (294)
.++
T Consensus 326 ~G~ 328 (526)
T COG5064 326 CGA 328 (526)
T ss_pred ccc
Confidence 333
No 14
>KOG4199|consensus
Probab=99.58 E-value=8.4e-14 Score=122.81 Aligned_cols=216 Identities=17% Similarity=0.221 Sum_probs=178.4
Q ss_pred ccccccccccCCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCc---------ccHHHHHhcCChHHHHHhhCCC-CHH
Q psy15592 23 KCRNSSLRWRDPNLTEVISFLS-NPNNVIKANAAAYLQHLCYMDD---------PNKQKTRSLGGIPPLVKLLGHE-SPD 91 (294)
Q Consensus 23 ~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~a~~~L~nL~~~~~---------~~k~~i~~~g~i~~Lv~lL~s~-~~~ 91 (294)
.+-||..+++.+.++.+...|. .+..++.+...++++.+.+.++ .....|.+.|++..|++.++-. +|.
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 5688999999999999996665 4455677788899999987542 3445677888999999999864 688
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCH---HHHHHHHHHHHHhcccchhhHHHHhhChHHHHH
Q psy15592 92 VFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADA---EVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVN 168 (294)
Q Consensus 92 v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~---~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~ 168 (294)
+....+.+|..|+. .++.+..|.+.||+..|++++.++.+. ++.+.++.+|+.|+.++++|..|++.|+.+.++
T Consensus 258 ~L~~l~~tl~~lAV---r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 258 SLVSLSTTLKALAV---RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKII 334 (461)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHH
Confidence 88899999999998 788999999999999999999884333 355789999999999999999999999998888
Q ss_pred HhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHH
Q psy15592 169 HIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILR 248 (294)
Q Consensus 169 ~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~ 248 (294)
.++..++. ++.|...++.+++-|+-..+++-..+.+ .|+-...++.++.+.. ...++.+++..+|
T Consensus 335 ~l~~~h~~----------~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~avqAmkahP~----~a~vQrnac~~IR 399 (461)
T KOG4199|consen 335 TLALRHSD----------DPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLAVQAMKAHPV----AAQVQRNACNMIR 399 (461)
T ss_pred HHHHHcCC----------ChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHHHHHHHhCcH----HHHHHHHHHHHHH
Confidence 88754433 3568889999999999887777777888 6888999999986532 2479999999999
Q ss_pred HhccCCcc
Q psy15592 249 NLSFRCQE 256 (294)
Q Consensus 249 nLs~~~~~ 256 (294)
|+..|.++
T Consensus 400 Niv~rs~~ 407 (461)
T KOG4199|consen 400 NIVVRSAE 407 (461)
T ss_pred HHHHhhhh
Confidence 99999853
No 15
>KOG1048|consensus
Probab=99.57 E-value=2.4e-14 Score=138.13 Aligned_cols=222 Identities=26% Similarity=0.339 Sum_probs=171.2
Q ss_pred ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc--cHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHH
Q psy15592 23 KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDP--NKQKTRSLGGIPPLVKLLGH-ESPDVFRNACGA 99 (294)
Q Consensus 23 ~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~--~k~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~a 99 (294)
+..-|..+.+.|+|+.||.+|.+++.+++.+|+++|+||.|.+.. ||..|.+.+||+.++++|+. .|.++++...+.
T Consensus 264 d~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~ 343 (717)
T KOG1048|consen 264 DNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGI 343 (717)
T ss_pred hHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHH
Confidence 456667788999999999999999999999999999999998766 99999999999999999997 789999999999
Q ss_pred HHHhhcCCCChhhHHHHHhcCChHHHHHHhcc--C-------C----CHHHHHHHHHHHHHhcc-cchhhHHHHh-hChH
Q psy15592 100 LRNLSYGRQNDENKRAIKNAGGIPLLINLLRK--T-------A----DAEVKELVTGVLWNLSS-CEDLKKSIID-DGLQ 164 (294)
Q Consensus 100 L~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~--~-------~----~~~~~~~a~~~L~nLs~-~~~~r~~i~~-~g~i 164 (294)
||||+. ++..|..++. .++..|..-+-. + . +.++..++++||+|+++ ..+.|+++.+ .|+|
T Consensus 344 LWNLSS---~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLI 419 (717)
T KOG1048|consen 344 LWNLSS---NDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLI 419 (717)
T ss_pred Hhcccc---hhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchH
Confidence 999998 7778888774 455555553311 0 1 35678899999999988 7799999998 5888
Q ss_pred HHHHHhhcc---------------------CC------------------------CC--------C---CC--------
Q psy15592 165 VVVNHIIIP---------------------HS------------------------GW--------D---PV-------- 180 (294)
Q Consensus 165 ~~L~~ll~~---------------------~s------------------------~~--------~---~~-------- 180 (294)
+.|+..+.. .+ +. - .+
T Consensus 420 daL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~ 499 (717)
T KOG1048|consen 420 DALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDL 499 (717)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhccccc
Confidence 877766640 00 00 0 00
Q ss_pred -----CC---------------------CccchhhHHHhHhHHHHhhhccC----HHHHHHH-HhhcCcHHHHHHHHHHh
Q psy15592 181 -----SA---------------------GETCWSTIFRNTSGVLRNASSAG----EYARKKL-RECEGLIDSLLYVVKSA 229 (294)
Q Consensus 181 -----~~---------------------~~~~~~~v~~~a~~~L~nLa~~~----~~~r~~~-~~~~g~i~~Lv~lL~~~ 229 (294)
.. .........+.+.|+|.||+... ...+..+ .+ +.+.+.|+++++..
T Consensus 500 ~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~k-ekgl~~l~~ll~~~ 578 (717)
T KOG1048|consen 500 PIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRK-EKGLPPLVELLRND 578 (717)
T ss_pred CCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhh-ccCccHHHHHHhcC
Confidence 00 01123456689999999998652 2345555 55 78899999999643
Q ss_pred HhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 230 IEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 230 ~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
++.++..+.++|+||+.+..
T Consensus 579 ------~~~vv~s~a~~LrNls~d~r 598 (717)
T KOG1048|consen 579 ------DSDVVRSAAGALRNLSRDIR 598 (717)
T ss_pred ------CchHHHHHHHHHhhhccCch
Confidence 35899999999999998763
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.57 E-value=2.7e-13 Score=118.80 Aligned_cols=198 Identities=24% Similarity=0.266 Sum_probs=162.6
Q ss_pred cccCCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC
Q psy15592 30 RWRDPNLTEVISFLS-NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQ 108 (294)
Q Consensus 30 i~~~g~i~~Lv~lL~-s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~ 108 (294)
+++.+.++.|+.+|+ +.++.+++.+..++.+.+ ..+.++..|++.||++.+..+|.++++.++..|+++|-|++.
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~--- 83 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV--- 83 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC---
Confidence 478899999999998 568999999999999988 468999999999999999999999999999999999999997
Q ss_pred ChhhHHHHHhcCChHHHHHHhcc-CCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccch
Q psy15592 109 NDENKRAIKNAGGIPLLINLLRK-TADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCW 187 (294)
Q Consensus 109 ~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~ 187 (294)
+.+|+..+-. .++.+++.+.+ ..+..+|..++++|.||+..++.+..+.. .++-+..++. +|.
T Consensus 84 ~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~--~G~---------- 147 (254)
T PF04826_consen 84 NDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLS--SGS---------- 147 (254)
T ss_pred ChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHH--cCC----------
Confidence 7888887754 47777776544 34778999999999999998888777754 4555567773 231
Q ss_pred hhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 188 STIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 188 ~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
..++.++.++|.|||+++.-.+..+. .++...++.++... .+.++...++.+..|++.+.
T Consensus 148 ~~~k~~vLk~L~nLS~np~~~~~Ll~--~q~~~~~~~Lf~~~-----~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 148 EKTKVQVLKVLVNLSENPDMTRELLS--AQVLSSFLSLFNSS-----ESKENLLRVLTFFENINENI 207 (254)
T ss_pred hHHHHHHHHHHHHhccCHHHHHHHHh--ccchhHHHHHHccC-----CccHHHHHHHHHHHHHHHhh
Confidence 34788999999999998865555554 37788999999643 23578899999999997665
No 17
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.55 E-value=1.4e-13 Score=106.29 Aligned_cols=118 Identities=36% Similarity=0.528 Sum_probs=108.8
Q ss_pred cccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCC
Q psy15592 30 RWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQN 109 (294)
Q Consensus 30 i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~ 109 (294)
+.+.|+++.++++|++++.+++..++.+|.+++..+++.+..+.+.|+++.++++|.+++++++..|+++|+||+.+ .
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~--~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG--P 80 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC--c
Confidence 56889999999999999999999999999999987789999999999999999999999999999999999999973 5
Q ss_pred hhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 110 DENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 110 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
+..+..+.+.|+++.|++++.+. +..+++.++++|+||+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 56778888999999999999884 89999999999999863
No 18
>KOG4199|consensus
Probab=99.55 E-value=4.4e-13 Score=118.32 Aligned_cols=217 Identities=18% Similarity=0.233 Sum_probs=180.7
Q ss_pred cccccccCCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHH
Q psy15592 26 NSSLRWRDPNLTEVISFLS--NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGH-ESPDVFRNACGALRN 102 (294)
Q Consensus 26 ~~~~i~~~g~i~~Lv~lL~--s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~aL~n 102 (294)
.+..++++.++..++++|. .++.++......+++..|..++-+|..+++.+.++.+...|.. +..++.+..+++++.
T Consensus 137 ~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~ 216 (461)
T KOG4199|consen 137 KQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRA 216 (461)
T ss_pred CCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHH
Confidence 3556778999999999995 5677788888889999888899999999999999999976655 444688899999999
Q ss_pred hhcCCC-------ChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCC
Q psy15592 103 LSYGRQ-------NDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHS 175 (294)
Q Consensus 103 Ls~~~~-------~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s 175 (294)
|.++++ .......|.+.|++..|++.++..-++......+.+|..|+..++.+..|.+.|++..++.++.+ +
T Consensus 217 l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d-~ 295 (461)
T KOG4199|consen 217 LLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDD-S 295 (461)
T ss_pred hcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhh-h
Confidence 997211 12235677888999999999998778999999999999999999999999999999999999952 1
Q ss_pred CCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 176 GWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 176 ~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
+ +.....+.+.++..|+.|+.++ .++..+++ .|+.+.++.++..++ .++.+.+.++.++.-||.|.+
T Consensus 296 n-------~~~~r~l~k~~lslLralAG~D-svKs~IV~-~gg~~~ii~l~~~h~----~~p~Vi~~~~a~i~~l~LR~p 362 (461)
T KOG4199|consen 296 N-------EQGNRTLAKTCLSLLRALAGSD-SVKSTIVE-KGGLDKIITLALRHS----DDPLVIQEVMAIISILCLRSP 362 (461)
T ss_pred c-------hhhHHHHHHHHHHHHHHHhCCC-chHHHHHH-hcChHHHHHHHHHcC----CChHHHHHHHHHHHHHHhcCc
Confidence 1 2233467889999999999887 48999999 699999999997553 467899999999999999875
Q ss_pred c
Q psy15592 256 E 256 (294)
Q Consensus 256 ~ 256 (294)
+
T Consensus 363 d 363 (461)
T KOG4199|consen 363 D 363 (461)
T ss_pred c
Confidence 3
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.54 E-value=1.7e-13 Score=119.99 Aligned_cols=174 Identities=19% Similarity=0.201 Sum_probs=145.8
Q ss_pred hhHHHhhhcccc--ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC
Q psy15592 11 SQEEFYSPSLNK--KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE 88 (294)
Q Consensus 11 ~q~~al~~l~~l--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~ 88 (294)
-|+.++.++.+. ...+++.+.+.|+++.+..+|.++++.++..|.++|.|++ .+.+++..|..+ ++.+++.+.+.
T Consensus 29 i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls-~~~en~~~Ik~~--i~~Vc~~~~s~ 105 (254)
T PF04826_consen 29 IQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLS-VNDENQEQIKMY--IPQVCEETVSS 105 (254)
T ss_pred HHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcC-CChhhHHHHHHH--HHHHHHHHhcC
Confidence 578888888877 5789999999999999999999999999999999999999 568899988775 88888866554
Q ss_pred --CHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHH
Q psy15592 89 --SPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVV 166 (294)
Q Consensus 89 --~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~ 166 (294)
+.+++..++++|.||+. .+++...+. +.++.++.+|..+ +..++.+++++|.|||.++.+...++.+.++.-
T Consensus 106 ~lns~~Q~agLrlL~nLtv---~~~~~~~l~--~~i~~ll~LL~~G-~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~ 179 (254)
T PF04826_consen 106 PLNSEVQLAGLRLLTNLTV---TNDYHHMLA--NYIPDLLSLLSSG-SEKTKVQVLKVLVNLSENPDMTRELLSAQVLSS 179 (254)
T ss_pred CCCCHHHHHHHHHHHccCC---CcchhhhHH--hhHHHHHHHHHcC-ChHHHHHHHHHHHHhccCHHHHHHHHhccchhH
Confidence 67899999999999997 555666664 5799999999885 889999999999999999999999998888877
Q ss_pred HHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhcc
Q psy15592 167 VNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSA 204 (294)
Q Consensus 167 L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~ 204 (294)
++.++... . ..++...+..+..|+..+
T Consensus 180 ~~~Lf~~~--~---------~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 180 FLSLFNSS--E---------SKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHccC--C---------ccHHHHHHHHHHHHHHHh
Confidence 77777421 1 134677888888888654
No 20
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.39 E-value=1.3e-11 Score=95.13 Aligned_cols=118 Identities=35% Similarity=0.485 Sum_probs=104.1
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 71 KTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 71 ~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
.+.+.|+++.|+++|++++..++..++++|.+++.+ .+..+..+.+.|+++.++++|.+ .++.++..++++|+||+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG--NNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHcc
Confidence 467889999999999999999999999999999984 68899999999999999999988 589999999999999998
Q ss_pred cc-hhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhc
Q psy15592 151 CE-DLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS 203 (294)
Q Consensus 151 ~~-~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~ 203 (294)
.. ..+..+.+.|+++.+..++... +..+.+.++++|+||+.
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~~------------~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDSS------------NEDIQKNATGALSNLAS 120 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhcC------------CHHHHHHHHHHHHHhhC
Confidence 76 5667778899999999999421 24688999999999873
No 21
>KOG4500|consensus
Probab=99.28 E-value=1.1e-10 Score=106.15 Aligned_cols=219 Identities=16% Similarity=0.236 Sum_probs=163.4
Q ss_pred ccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCC----C---CHHHHHHHHHHHHHh
Q psy15592 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGH----E---SPDVFRNACGALRNL 103 (294)
Q Consensus 31 ~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s----~---~~~v~~~a~~aL~nL 103 (294)
+.+|.++.|.+..+|++.++-.++.++|+|+|+.+.++|..+.+.||-..++.+|+. + +.+....+.+.|.|-
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999999999999999997777777764 2 347888889999999
Q ss_pred hcCCCChhhHHHHHhcCChHHHHHHhccC---------------------------------------------CCHHHH
Q psy15592 104 SYGRQNDENKRAIKNAGGIPLLINLLRKT---------------------------------------------ADAEVK 138 (294)
Q Consensus 104 s~~~~~~~~k~~i~~~g~i~~Lv~lL~~~---------------------------------------------~~~~~~ 138 (294)
..+ +++.+..+.+.|.++.|..++.-. ..+++.
T Consensus 164 ~l~--~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~ 241 (604)
T KOG4500|consen 164 ILD--SRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDID 241 (604)
T ss_pred hCC--cHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchh
Confidence 985 888999999999999777655211 122344
Q ss_pred HHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCC-----------------CC------------------
Q psy15592 139 ELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVS-----------------AG------------------ 183 (294)
Q Consensus 139 ~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~-----------------~~------------------ 183 (294)
+....+|...+.++..|-.+.+.|+..-+..++..+.....+. .+
T Consensus 242 eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~ 321 (604)
T KOG4500|consen 242 EMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLE 321 (604)
T ss_pred hHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHH
Confidence 4556677777788888888888888776666665311111000 00
Q ss_pred ---ccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 184 ---ETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 184 ---~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
+..+..+...+.-++.|++..+..+ ..+++ .|.+..|++++.... +-+.+.+.+..++++||||....
T Consensus 322 sw~~S~d~~l~t~g~LaigNfaR~D~~c-i~~v~-~~~~nkL~~~l~~~~-~vdgnV~~qhA~lsALRnl~IPv 392 (604)
T KOG4500|consen 322 SWFRSDDSNLITMGSLAIGNFARRDDIC-IQLVQ-KDFLNKLISCLMQEK-DVDGNVERQHACLSALRNLMIPV 392 (604)
T ss_pred HHhcCCchhHHHHHHHHHHhhhccchHH-HHHHH-HHHHHHHHHHHHHhc-CCCccchhHHHHHHHHHhccccC
Confidence 1223445566777889999988644 55666 599999999998643 23455789999999999998654
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.14 E-value=4.8e-09 Score=101.24 Aligned_cols=204 Identities=15% Similarity=0.147 Sum_probs=163.6
Q ss_pred cCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy15592 32 RDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 32 ~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
..+..+.|...|.++++.+|..+++.|.++..++......+.+.+.++.++.++.+++..+...|..+|.+|+. ++.
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~---~~~ 151 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS---HPE 151 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC---Cch
Confidence 45667899999999999999999999999997665556666778899999999999999999999999999997 566
Q ss_pred hHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhH
Q psy15592 112 NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTI 190 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v 190 (294)
.-..+...+.++.|..++.. ++..++..+..++.+++.. ++....+.+.|+++.++..+.+ .|.-+
T Consensus 152 ~~~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~------------dDiLv 218 (503)
T PF10508_consen 152 GLEQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS------------DDILV 218 (503)
T ss_pred hHHHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC------------ccHHH
Confidence 66778888999999999977 4778899999999999764 5777788889999999888831 23557
Q ss_pred HHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccC
Q psy15592 191 FRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFR 253 (294)
Q Consensus 191 ~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~ 253 (294)
+.+++.+|..|+. .+++.+.+.+ .|+++.|+.++....++.....-..-..+....|++..
T Consensus 219 qlnalell~~La~-~~~g~~yL~~-~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~ 279 (503)
T PF10508_consen 219 QLNALELLSELAE-TPHGLQYLEQ-QGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV 279 (503)
T ss_pred HHHHHHHHHHHHc-ChhHHHHHHh-CCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence 8899999999999 5578899998 69999999999876543212222223334555665553
No 23
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.05 E-value=3.3e-09 Score=96.39 Aligned_cols=188 Identities=17% Similarity=0.228 Sum_probs=136.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCC----CCHHHHHHHHHHHHHhhcCCCCh
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGH----ESPDVFRNACGALRNLSYGRQND 110 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s----~~~~v~~~a~~aL~nLs~~~~~~ 110 (294)
...++++++.++|.-++..|+..|..+....+... .-...+.++.++..|++ ++.+++..|+.+|.+|.. .+
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~-~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~---~~ 181 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS-EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR---SK 181 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT---SH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC---cc
Confidence 57889999999999999999999999775433322 22223456777777765 455678999999999996 89
Q ss_pred hhHHHHHhcCChHHHHHHh------ccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCc
Q psy15592 111 ENKRAIKNAGGIPLLINLL------RKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGE 184 (294)
Q Consensus 111 ~~k~~i~~~g~i~~Lv~lL------~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~ 184 (294)
..|..+.+.|+++.++.++ .+....+++++++-++|-|+.+++..+.+.+.++++.+..++..
T Consensus 182 ~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~----------- 250 (312)
T PF03224_consen 182 EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKD----------- 250 (312)
T ss_dssp HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH-----------
T ss_pred hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHh-----------
Confidence 9999999999999999999 44567889999999999999999999999999999999999952
Q ss_pred cchhhHHHhHhHHHHhhhccCHH-HHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHH
Q psy15592 185 TCWSTIFRNTSGVLRNASSAGEY-ARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVEN 242 (294)
Q Consensus 185 ~~~~~v~~~a~~~L~nLa~~~~~-~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~ 242 (294)
...+.|++-+.++|+|+....+. ....|.. .|+++. ++.|.. +...|+++.+-
T Consensus 251 ~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~~l~~-l~~L~~---rk~~Dedl~ed 304 (312)
T PF03224_consen 251 SIKEKVVRVSLAILRNLLSKAPKSNIELMVL-CGLLKT-LQNLSE---RKWSDEDLTED 304 (312)
T ss_dssp --SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H-HHHH-HHHHHS---S--SSHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhccHHHHHHHHHH-ccHHHH-HHHHhc---CCCCCHHHHHH
Confidence 12267999999999999876643 6777777 365544 444432 23345565553
No 24
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.97 E-value=1.2e-08 Score=92.79 Aligned_cols=205 Identities=18% Similarity=0.173 Sum_probs=143.2
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCcccHHHHHhc------CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy15592 36 LTEVISFLS--NPNNVIKANAAAYLQHLCYMDDPNKQKTRSL------GGIPPLVKLLGHESPDVFRNACGALRNLSYGR 107 (294)
Q Consensus 36 i~~Lv~lL~--s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~------g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~ 107 (294)
...++.+|+ ++++++..+....+..+...++.....+... .-..++++++.+++..++..|+..|..|...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~- 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ- 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc-
Confidence 566666665 3688999999999999887666555555542 2578999999999999999999999999873
Q ss_pred CChhhHHHHHhcCChHHHHHHhccC---CCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCc
Q psy15592 108 QNDENKRAIKNAGGIPLLINLLRKT---ADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGE 184 (294)
Q Consensus 108 ~~~~~k~~i~~~g~i~~Lv~lL~~~---~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~ 184 (294)
.+. +......+.++.++..+++. .+.+.+..++.+|.+|...+.+|..+.+.|+++.+..++....+.. .
T Consensus 136 -~~~-~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~-----~ 208 (312)
T PF03224_consen 136 -GPK-RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNS-----N 208 (312)
T ss_dssp -TTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH------------
T ss_pred -CCc-cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccC-----C
Confidence 222 22221256678888888762 2445678899999999999999999999999999998883111111 2
Q ss_pred cchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 185 TCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 185 ~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
.....+.++++-|+|.|+..++ ....|.. .+.++.|+.+++.... +++.--++++|+||.....
T Consensus 209 ~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~-~~~i~~L~~i~~~~~K-----EKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 209 SSGIQLQYQALLCLWLLSFEPE-IAEELNK-KYLIPLLADILKDSIK-----EKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp --HHHHHHHHHHHHHHHTTSHH-HHHHHHT-TSHHHHHHHHHHH--S-----HHHHHHHHHHHHHTTSSSS
T ss_pred CCchhHHHHHHHHHHHHhcCHH-HHHHHhc-cchHHHHHHHHHhccc-----chHHHHHHHHHHHHHhccH
Confidence 3447799999999999999775 6667777 4799999999987653 6899999999999987764
No 25
>KOG2160|consensus
Probab=98.94 E-value=1.3e-07 Score=84.89 Aligned_cols=146 Identities=18% Similarity=0.232 Sum_probs=124.4
Q ss_pred cccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCH-HHHHHHHHHHHH
Q psy15592 24 CRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP-DVFRNACGALRN 102 (294)
Q Consensus 24 ~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~-~v~~~a~~aL~n 102 (294)
-+|..-++..||+.+++..+.+++.++|+.|+++|..++.+++..+..+++.|+++.|+..|.++++ .++..|+.++++
T Consensus 114 iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~Aiss 193 (342)
T KOG2160|consen 114 IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISS 193 (342)
T ss_pred hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 4677778899999999999999999999999999999999999999999999999999999987654 688999999999
Q ss_pred hhcCCCChhhHHHHHhcCChHHHHHHhccC-CCHHHHHHHHHHHHHhcccc-hhhHHHHhhChHHHHHHhh
Q psy15592 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKT-ADAEVKELVTGVLWNLSSCE-DLKKSIIDDGLQVVVNHII 171 (294)
Q Consensus 103 Ls~~~~~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~nLs~~~-~~r~~i~~~g~i~~L~~ll 171 (294)
|..+ ++.....+...+|...|..+|.+. .+..++..++-.+..|...+ ..+..+...|....+..+.
T Consensus 194 LIRn--~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~ 262 (342)
T KOG2160|consen 194 LIRN--NKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLI 262 (342)
T ss_pred HHhc--CcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHh
Confidence 9964 888899999999999999999883 57888899999999997654 3344333456666666665
No 26
>KOG1222|consensus
Probab=98.94 E-value=1.2e-08 Score=94.44 Aligned_cols=202 Identities=17% Similarity=0.165 Sum_probs=161.2
Q ss_pred ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy15592 23 KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102 (294)
Q Consensus 23 ~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~n 102 (294)
-++||..+.+.|.++.|+++....+++++......+.|++|. ..+|..++..|-+|.|+.+|.+++. ...|+..|+.
T Consensus 334 f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh 410 (791)
T KOG1222|consen 334 FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYH 410 (791)
T ss_pred hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCccc--chhhhhhhhh
Confidence 578999999999999999999999999999999999999985 6899999999999999999988654 2346789999
Q ss_pred hhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCC
Q psy15592 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSA 182 (294)
Q Consensus 103 Ls~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~ 182 (294)
+|. ++..|..+....+|+.+.+.+-.+.+.++-....+...||+-+.-|.+-+.+-.++.+|+..--.+ . +
T Consensus 411 ~S~---dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~-~-D---- 481 (791)
T KOG1222|consen 411 LSC---DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKS-R-D---- 481 (791)
T ss_pred hcc---CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcc-c-c----
Confidence 998 888999999999999999988776677777777777789999888888887765666666443211 0 0
Q ss_pred CccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccC
Q psy15592 183 GETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFR 253 (294)
Q Consensus 183 ~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~ 253 (294)
. + -...++|++.+....+..+.+. +..|..++.. +.++...-.|+++|.||...
T Consensus 482 -----~-l---LmK~vRniSqHeg~tqn~Fidy---vgdLa~i~~n-----d~~E~F~~EClGtlanL~v~ 535 (791)
T KOG1222|consen 482 -----L-L---LMKVVRNISQHEGATQNMFIDY---VGDLAGIAKN-----DNSESFGLECLGTLANLKVT 535 (791)
T ss_pred -----h-H---HHHHHHHhhhccchHHHHHHHH---HHHHHHHhhc-----CchHHHHHHHHHHHhhcccC
Confidence 1 1 2257899999877677777765 6677777743 33456777889999999873
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.91 E-value=1.3e-07 Score=91.24 Aligned_cols=211 Identities=17% Similarity=0.148 Sum_probs=162.7
Q ss_pred ccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy15592 27 SSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYG 106 (294)
Q Consensus 27 ~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~ 106 (294)
...+.+.+.++.++..|.+++.++...|+.+|.+++.. ...-..+...+++..|..++...+..++.....++.+++..
T Consensus 112 ~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 112 AQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 45567789999999999999999999999999999954 55666777888899999999988888999999999999974
Q ss_pred CCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccc
Q psy15592 107 RQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETC 186 (294)
Q Consensus 107 ~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~ 186 (294)
+++....+.+.|.++.++..+++ .|.-++.+++.+|..|+..+++..-+.+.|+++.+..++..... +++. +
T Consensus 191 --S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~-dp~~-~--- 262 (503)
T PF10508_consen 191 --SPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEE-DPRL-S--- 262 (503)
T ss_pred --CHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcccc-CCcc-c---
Confidence 88888888999999999999988 69999999999999999999999999999999999999963221 2111 0
Q ss_pred hhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 187 WSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 187 ~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
.-..-.......+++...+. ... +..|.++..+....+ ..|...++.|+.++..++...+
T Consensus 263 -~~~l~g~~~f~g~la~~~~~--~v~----~~~p~~~~~l~~~~~--s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 263 -SLLLPGRMKFFGNLARVSPQ--EVL----ELYPAFLERLFSMLE--SQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred -chhhhhHHHHHHHHHhcChH--HHH----HHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHhCCHH
Confidence 11222333666777775331 122 223444444443322 3356788999999999997763
No 28
>KOG2160|consensus
Probab=98.86 E-value=3.7e-07 Score=82.07 Aligned_cols=191 Identities=15% Similarity=0.126 Sum_probs=154.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHH
Q psy15592 45 NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPL 124 (294)
Q Consensus 45 s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~ 124 (294)
+.+.+-++.|..-|..++ ++-+|...+...||+.+++.++++.+..++..|+++|...+.. ++..+..+.+.|+.+.
T Consensus 94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qN--NP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQN--NPKSQEQVIELGALSK 170 (342)
T ss_pred cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhc--CHHHHHHHHHcccHHH
Confidence 457788899999999999 5789999999999999999999999999999999999999974 9999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhc
Q psy15592 125 LINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS 203 (294)
Q Consensus 125 Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~ 203 (294)
|+.++.+..+.+.+..++.+++++-.+ +.....+...++...|..++.. +. .+..+++.++-.+..|..
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~--~~--------~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQS--NN--------TSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc--CC--------cchHHHHHHHHHHHHHHH
Confidence 999999877788889999999999764 5778888887778888888842 11 124578889999999987
Q ss_pred cCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 204 AGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 204 ~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
.....+..+.. .|....++.+.. ..+..+.|.++.++..+.+...
T Consensus 241 ~~~s~~d~~~~-~~f~~~~~~l~~------~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 241 EDKSDEDIASS-LGFQRVLENLIS------SLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhhhhhHHHH-hhhhHHHHHHhh------ccchhhhHHHHHHHHHHHHHHh
Confidence 76666666655 365555555543 2235788888888877766653
No 29
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.72 E-value=7.7e-07 Score=83.34 Aligned_cols=205 Identities=16% Similarity=0.128 Sum_probs=146.2
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 38 EVISFLSNP-NNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE--SPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 38 ~Lv~lL~s~-~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
-|...|+++ +...+..|+..|..+.. .++.|..+.+.+|++.|+.+|+.. +..++-.++-++|-||+ +++...
T Consensus 147 ~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF---~~~~~~ 222 (429)
T cd00256 147 WLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTF---NPHAAE 222 (429)
T ss_pred HHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhc---cHHHHH
Confidence 344555543 46778888899999885 578999999999999999999863 45889999999999999 666667
Q ss_pred HHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccc-------hhhHHHHhhChHHHHHHhhccCCCCCCCCC-----
Q psy15592 115 AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE-------DLKKSIIDDGLQVVVNHIIIPHSGWDPVSA----- 182 (294)
Q Consensus 115 ~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-------~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~----- 182 (294)
.+.+.+.|+.|+++++.+..+.+.+-++.+|+||...+ .....++..|+++.+..+.. ..|.++..
T Consensus 223 ~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~--rk~~DedL~edl~ 300 (429)
T cd00256 223 VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQ--RKYDDEDLTDDLK 300 (429)
T ss_pred hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhc--CCCCcHHHHHHHH
Confidence 77789999999999999888899999999999997632 34567778898887766552 22322210
Q ss_pred --------------------------------Cccc--------------hhhHHHhHhHHH----------------Hh
Q psy15592 183 --------------------------------GETC--------------WSTIFRNTSGVL----------------RN 200 (294)
Q Consensus 183 --------------------------------~~~~--------------~~~v~~~a~~~L----------------~n 200 (294)
.+.+ +..+.+.-..+| ..
T Consensus 301 ~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige 380 (429)
T cd00256 301 FLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGE 380 (429)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHH
Confidence 0000 111222222222 22
Q ss_pred hhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 201 ASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 201 La~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
+....|.+|..+.+ -|+=..+++++. +.|++++.+|+-++.-|-.+++
T Consensus 381 ~vr~~P~gr~i~~~-lg~K~~vM~Lm~------h~d~~Vr~eAL~avQklm~~~w 428 (429)
T cd00256 381 YVRHYPRGKDVVEQ-LGGKQRVMRLLN------HEDPNVRYEALLAVQKLMVHNW 428 (429)
T ss_pred HHHHCccHHHHHHH-cCcHHHHHHHhc------CCCHHHHHHHHHHHHHHHHhcC
Confidence 22334457777777 487778888883 5578999999999988877665
No 30
>KOG1293|consensus
Probab=98.70 E-value=3.8e-07 Score=87.19 Aligned_cols=207 Identities=16% Similarity=0.131 Sum_probs=142.5
Q ss_pred ccccccCCCHHHHHHhhc------CCCHHHHHHHHHH---HHHhhcC-CcccHHHHHhcCChHHHHHhhCCCCHHHHHHH
Q psy15592 27 SSLRWRDPNLTEVISFLS------NPNNVIKANAAAY---LQHLCYM-DDPNKQKTRSLGGIPPLVKLLGHESPDVFRNA 96 (294)
Q Consensus 27 ~~~i~~~g~i~~Lv~lL~------s~~~~~~~~a~~~---L~nL~~~-~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a 96 (294)
...-.++..++.+++++. ...++.+.-+++- ....+.. .-.+|+++.+.-....+..+....+......|
T Consensus 318 q~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa 397 (678)
T KOG1293|consen 318 QLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAA 397 (678)
T ss_pred hhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHH
Confidence 333445555666666663 3445444433332 1222221 12455566655445555555556778888888
Q ss_pred HHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc-cchhhHHHHhhChHHHHHHhhccCC
Q psy15592 97 CGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSIIDDGLQVVVNHIIIPHS 175 (294)
Q Consensus 97 ~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~r~~i~~~g~i~~L~~ll~~~s 175 (294)
+-++.+++. -...-+..+-...++.+|++++.+ ++..++..++++|+|+.. ..+.|..+++.|+++.+..++..
T Consensus 398 ~l~~~s~sr--sV~aL~tg~~~~dv~~plvqll~d-p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~-- 472 (678)
T KOG1293|consen 398 LLCLKSFSR--SVSALRTGLKRNDVAQPLVQLLMD-PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTD-- 472 (678)
T ss_pred HHHHHHHHH--HHHHHHcCCccchhHHHHHHHhhC-cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcC--
Confidence 889988885 144456666678899999999977 588999999999999976 57889999999999999888842
Q ss_pred CCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 176 GWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 176 ~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
.+..+..++.|+|+++..+..+.++..-...=....++.+. +++|..++|+|...||||+.+.
T Consensus 473 ----------~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~------nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 473 ----------PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLI------NDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred ----------CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHH------hCCCHHHHHHHHHHHHHhhcCc
Confidence 12447889999999999876555443222112223566666 5777899999999999999884
No 31
>KOG1293|consensus
Probab=98.63 E-value=4.7e-06 Score=79.91 Aligned_cols=211 Identities=17% Similarity=0.157 Sum_probs=140.0
Q ss_pred cccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCC
Q psy15592 30 RWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQN 109 (294)
Q Consensus 30 i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~ 109 (294)
.-...++++||++|..|+..++..+..+|.|+.-.....|..+...|||..+.+++.+.+..++..+.|+||++.++ .+
T Consensus 415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~-~d 493 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFN-CD 493 (678)
T ss_pred CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhc-ch
Confidence 45677899999999999999999999999999977788999999999999999999999999999999999999995 23
Q ss_pred hhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhh-ChH-HHHHHhhccCCCCCCCCCCccc
Q psy15592 110 DENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDD-GLQ-VVVNHIIIPHSGWDPVSAGETC 186 (294)
Q Consensus 110 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~-g~i-~~L~~ll~~~s~~~~~~~~~~~ 186 (294)
..-+.+....=+...+..+..+ ++.++|++++..|+|+.-+ .+.-+-+++. +.+ ..+...+.-..+.+
T Consensus 494 e~~k~~~~~ki~a~~i~~l~nd-~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~~~ld~i~l~lk~a~~~p-------- 564 (678)
T KOG1293|consen 494 EEEKFQLLAKIPANLILDLIND-PDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFKDVLDKIDLQLKIAIGSP-------- 564 (678)
T ss_pred HHHHHHHHHHhhHHHHHHHHhC-CCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhHHHHHHHHHHhhccCCc--------
Confidence 3334555555566677777777 6999999999999999543 4555555542 222 33333332111211
Q ss_pred hhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhc--CCCcchHHHHHHHHHHhccCCc
Q psy15592 187 WSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKS--NIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 187 ~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~--~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
-..+--...+.-++..+-..++.| +|..+.++-.-+...... ........++++.+.|++...+
T Consensus 565 --i~ie~~~~~~~l~~~~d~~~~~am---~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~~~~s 630 (678)
T KOG1293|consen 565 --ILIEFLAKKMRLLNPLDTQQKKAM---EGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLTTTDS 630 (678)
T ss_pred --eehhhHHHHHHhccchhHHHHHHH---HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCCCC
Confidence 011111122222332233455554 355665554332111100 1123466678999999987764
No 32
>KOG4500|consensus
Probab=98.61 E-value=1.7e-06 Score=79.45 Aligned_cols=223 Identities=14% Similarity=0.109 Sum_probs=151.3
Q ss_pred cchhHHHhhhcccc---ccccccccccCCCHHHHHHhhcC----C---CHHHHHHHHHHHHHhhcCCcccHHHHHhcCCh
Q psy15592 9 TGSQEEFYSPSLNK---KCRNSSLRWRDPNLTEVISFLSN----P---NNVIKANAAAYLQHLCYMDDPNKQKTRSLGGI 78 (294)
Q Consensus 9 ~~~q~~al~~l~~l---~~~~~~~i~~~g~i~~Lv~lL~s----~---~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i 78 (294)
+..-+...++|.|+ ++++|..+.+.||-..++++|+. + ++++...+...|.|....+++.+.++.+.|.+
T Consensus 101 ~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl 180 (604)
T KOG4500|consen 101 TEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVL 180 (604)
T ss_pred ccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccH
Confidence 33445555677777 78999999999998888888863 2 34677888899999988899999999999999
Q ss_pred HHHHHhhCCC--C--------------------------------------------HHHHHHHH---------------
Q psy15592 79 PPLVKLLGHE--S--------------------------------------------PDVFRNAC--------------- 97 (294)
Q Consensus 79 ~~Lv~lL~s~--~--------------------------------------------~~v~~~a~--------------- 97 (294)
+.|...+.-+ + +++...+.
T Consensus 181 ~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~ 260 (604)
T KOG4500|consen 181 NTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLS 260 (604)
T ss_pred HHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeee
Confidence 9887766411 0 00000000
Q ss_pred -------HHHHHhh---------------------------cCCCChhhHHHHHhcC-ChHHHHHHhccCCCHHHHHHHH
Q psy15592 98 -------GALRNLS---------------------------YGRQNDENKRAIKNAG-GIPLLINLLRKTADAEVKELVT 142 (294)
Q Consensus 98 -------~aL~nLs---------------------------~~~~~~~~k~~i~~~g-~i~~Lv~lL~~~~~~~~~~~a~ 142 (294)
.++.+|. .| ++.-..+...+ .++.++..+.+ .+..++..+.
T Consensus 261 la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG---DeSMq~L~~~p~~l~~~~sw~~S-~d~~l~t~g~ 336 (604)
T KOG4500|consen 261 LAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG---DESMQKLHADPQFLDFLESWFRS-DDSNLITMGS 336 (604)
T ss_pred hhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC---chHHHHHhcCcHHHHHHHHHhcC-CchhHHHHHH
Confidence 1111111 11 11111112111 34444455555 4677777888
Q ss_pred HHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHH
Q psy15592 143 GVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSL 222 (294)
Q Consensus 143 ~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~L 222 (294)
-++.|++..++++-.+++.|.+..++.++....+ ...+..++..++.+|||+.--- .+|..|.. .|..+.+
T Consensus 337 LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~-------vdgnV~~qhA~lsALRnl~IPv-~nka~~~~-aGvteaI 407 (604)
T KOG4500|consen 337 LAIGNFARRDDICIQLVQKDFLNKLISCLMQEKD-------VDGNVERQHACLSALRNLMIPV-SNKAHFAP-AGVTEAI 407 (604)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC-------CCccchhHHHHHHHHHhccccC-Cchhhccc-cchHHHH
Confidence 8999999999999999999999888888753222 2233567889999999998644 47788888 7999999
Q ss_pred HHHHHHhHhhcCCCcchHHHHHHHHHHh
Q psy15592 223 LYVVKSAIEKSNIGNKSVENCVCILRNL 250 (294)
Q Consensus 223 v~lL~~~~~~~~~~~~~~e~a~~~L~nL 250 (294)
...++.+. +.++-.-.++|+-+
T Consensus 408 L~~lk~~~------ppv~fkllgTlrM~ 429 (604)
T KOG4500|consen 408 LLQLKLAS------PPVTFKLLGTLRMI 429 (604)
T ss_pred HHHHHhcC------CcchHHHHHHHHHH
Confidence 99997654 35555567777754
No 33
>KOG1222|consensus
Probab=98.57 E-value=1.9e-06 Score=80.10 Aligned_cols=180 Identities=21% Similarity=0.213 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHH
Q psy15592 49 VIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINL 128 (294)
Q Consensus 49 ~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~l 128 (294)
-+...|...|.|++ .+...-..++..+.+.-||+.|..++-++.......|.-||. ..+||..+.+.|.++.|+++
T Consensus 278 qLLrva~ylLlNlA-ed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI---f~eNK~~M~~~~iveKL~kl 353 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLA-EDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI---FDENKIVMEQNGIVEKLLKL 353 (791)
T ss_pred HHHHHHHHHHHHHh-hhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh---hccchHHHHhccHHHHHHHh
Confidence 34456777889999 456667777888889999999999999999999999999998 88999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHH
Q psy15592 129 LRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYA 208 (294)
Q Consensus 129 L~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~ 208 (294)
... .+++++..++..|.|+|.+..+|..++..|.+|.+..++.+ +. -..-|...|..++.++ ..
T Consensus 354 fp~-~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~----d~----------~~~iA~~~lYh~S~dD-~~ 417 (791)
T KOG1222|consen 354 FPI-QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDS----DT----------KHGIALNMLYHLSCDD-DA 417 (791)
T ss_pred cCC-CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCC----cc----------cchhhhhhhhhhccCc-HH
Confidence 987 59999999999999999999999999999999999999942 11 1223668889999877 47
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 209 RKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 209 r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
+..+.. ..+|+.+...+-+++ +.++-...++.--|||...
T Consensus 418 K~Mfay-Tdci~~lmk~v~~~~-----~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 418 KAMFAY-TDCIKLLMKDVLSGT-----GSEVDLALIALCINLCLNK 457 (791)
T ss_pred HHHHHH-HHHHHHHHHHHHhcC-----CceecHHHHHHHHHHHhcc
Confidence 666666 478888887775543 2344444444445777543
No 34
>KOG4646|consensus
Probab=98.56 E-value=5.4e-07 Score=70.33 Aligned_cols=130 Identities=22% Similarity=0.255 Sum_probs=109.0
Q ss_pred CCHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhh
Q psy15592 34 PNLTEVISFL-SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN 112 (294)
Q Consensus 34 g~i~~Lv~lL-~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~ 112 (294)
+.+..||.-. ...+.+.+++...-|.|.++ ++.|...+++...+...+..|...++.+...+.+.|+|++. +..|
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~---d~~n 91 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL---DKTN 91 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc---ChHH
Confidence 4456666444 46789999999999999996 68999999999999999999999999999999999999997 8999
Q ss_pred HHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccc-hhhHHHHhhChHHHHH
Q psy15592 113 KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE-DLKKSIIDDGLQVVVN 168 (294)
Q Consensus 113 k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-~~r~~i~~~g~i~~L~ 168 (294)
+..|++.+|+|.++..+.+ +...+.-.+..+|..|+... ..|+.+..-..+..+.
T Consensus 92 ~~~I~ea~g~plii~~lss-p~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~ 147 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSS-PPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQ 147 (173)
T ss_pred HHHHHHhcCCceEEeecCC-ChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHH
Confidence 9999999999999999977 57777788888999998755 5566665544444443
No 35
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.51 E-value=9.4e-06 Score=76.11 Aligned_cols=178 Identities=16% Similarity=0.146 Sum_probs=130.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCCChhh
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE-SPDVFRNACGALRNLSYGRQNDEN 112 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~-~~~v~~~a~~aL~nLs~~~~~~~~ 112 (294)
....+++++|..++.-+...|+..|..+..............--...|...|++. +...+..|+.+|..|.. .+..
T Consensus 101 ~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~---~~~~ 177 (429)
T cd00256 101 KTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR---VDEY 177 (429)
T ss_pred cchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC---CchH
Confidence 4567888899988888999999999887633222111100000123555666654 46778888899999997 7889
Q ss_pred HHHHHhcCChHHHHHHhccCC-CHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHH
Q psy15592 113 KRAIKNAGGIPLLINLLRKTA-DAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIF 191 (294)
Q Consensus 113 k~~i~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~ 191 (294)
|..+.+.++++.|+.+|+... ..+++..++-++|-||.+++..+.+.+.++++.+..++.. ..-+.|+
T Consensus 178 R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~-----------s~KEKvv 246 (429)
T cd00256 178 RFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKE-----------STKEKVI 246 (429)
T ss_pred HHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHh-----------hhhHHHH
Confidence 999999999999999998744 6799999999999999999877777778999999999952 1226799
Q ss_pred HhHhHHHHhhhccCH------HHHHHHHhhcCcHHHHHHHHH
Q psy15592 192 RNTSGVLRNASSAGE------YARKKLRECEGLIDSLLYVVK 227 (294)
Q Consensus 192 ~~a~~~L~nLa~~~~------~~r~~~~~~~g~i~~Lv~lL~ 227 (294)
+-++.+|+||...+. .....|.+ .|+. .++..|.
T Consensus 247 Rv~l~~l~Nll~~~~~~~~~~~~~~~mv~-~~l~-~~l~~L~ 286 (429)
T cd00256 247 RIVLAIFRNLISKRVDREVKKTAALQMVQ-CKVL-KTLQSLE 286 (429)
T ss_pred HHHHHHHHHHhhcccccchhhhHHHHHHH-cChH-HHHHHHh
Confidence 999999999987431 23345666 3654 5555553
No 36
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.48 E-value=2.3e-07 Score=57.99 Aligned_cols=40 Identities=48% Similarity=0.655 Sum_probs=38.0
Q ss_pred CcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy15592 65 DDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLS 104 (294)
Q Consensus 65 ~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs 104 (294)
+++++..+++.|++|+|+++|++++++++..|+++|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999997
No 37
>KOG0168|consensus
Probab=98.45 E-value=6.5e-06 Score=80.94 Aligned_cols=220 Identities=16% Similarity=0.117 Sum_probs=159.0
Q ss_pred chhHHHhhhcccc----ccccccccccCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHh
Q psy15592 10 GSQEEFYSPSLNK----KCRNSSLRWRDPNLTEVISFLSN-PNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKL 84 (294)
Q Consensus 10 ~~q~~al~~l~~l----~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~l 84 (294)
+-|-++++.|++. +++.-..+.-.-.+|.||.+|++ .+.+++..|+++|.+|+-.-++.-..++++++||.|+.-
T Consensus 183 s~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~k 262 (1051)
T KOG0168|consen 183 SQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEK 262 (1051)
T ss_pred HHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHh
Confidence 4566777666654 33333333334558999999985 578999999999999997778888899999999999985
Q ss_pred hC-CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc---chhhHHHHh
Q psy15592 85 LG-HESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC---EDLKKSIID 160 (294)
Q Consensus 85 L~-s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~---~~~r~~i~~ 160 (294)
|. -...++.+.++.+|..++.. + -.++.++|++-..+..|.-- ....|+.|+.+-.|++.. ++....+
T Consensus 263 L~~IeyiDvAEQ~LqALE~iSR~--H---~~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~-- 334 (1051)
T KOG0168|consen 263 LLTIEYIDVAEQSLQALEKISRR--H---PKAILQAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVM-- 334 (1051)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhh--c---cHHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHH--
Confidence 54 57889999999999999952 3 34777899999999998763 667899999999998652 2333222
Q ss_pred hChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhcc---CHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCc
Q psy15592 161 DGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSA---GEYARKKLRECEGLIDSLLYVVKSAIEKSNIGN 237 (294)
Q Consensus 161 ~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~---~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~ 237 (294)
..+|+|..+|. +.|...+++++-|+..++.. .++--+.+.. .|+|....+++.-. +..-..
T Consensus 335 -ealPlL~~lLs------------~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dLi~~~~qLlsvt--~t~Ls~ 398 (1051)
T KOG0168|consen 335 -EALPLLTPLLS------------YQDKKPIESVCICLTRIADGFQHGPDKLDQLCS-HDLITNIQQLLSVT--PTILSN 398 (1051)
T ss_pred -HHHHHHHHHHh------------hccchhHHHHHHHHHHHHHhcccChHHHHHHhc-hhHHHHHHHHHhcC--cccccc
Confidence 46788888884 22345788888899888754 3344455666 49999999888543 122233
Q ss_pred chHHHHHHHHHHhccC
Q psy15592 238 KSVENCVCILRNLSFR 253 (294)
Q Consensus 238 ~~~e~a~~~L~nLs~~ 253 (294)
.+....+..|.-+|..
T Consensus 399 ~~~~~vIrmls~msS~ 414 (1051)
T KOG0168|consen 399 GTYTGVIRMLSLMSSG 414 (1051)
T ss_pred cchhHHHHHHHHHccC
Confidence 4555566666666655
No 38
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.29 E-value=1.4e-06 Score=54.36 Aligned_cols=41 Identities=49% Similarity=0.673 Sum_probs=37.8
Q ss_pred ChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 109 NDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 109 ~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
+++++..+++.|++++|+++|++ .+.++++.++++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKS-PDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTS-SSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhC
Confidence 46899999999999999999997 699999999999999973
No 39
>KOG0168|consensus
Probab=98.21 E-value=3.3e-05 Score=76.09 Aligned_cols=193 Identities=19% Similarity=0.173 Sum_probs=139.7
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHH-hhcCCcccHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCCChhh
Q psy15592 36 LTEVISFLSNP-NNVIKANAAAYLQH-LCYMDDPNKQKTRSLGGIPPLVKLLGHE-SPDVFRNACGALRNLSYGRQNDEN 112 (294)
Q Consensus 36 i~~Lv~lL~s~-~~~~~~~a~~~L~n-L~~~~~~~k~~i~~~g~i~~Lv~lL~s~-~~~v~~~a~~aL~nLs~~~~~~~~ 112 (294)
+..|+.-|+.. ++..+..|+.-|+. |+..+++.-.-|.-.-.+|.|+.+|+++ +.++...||+||.+|.- --+..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e--vlP~S 246 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE--VLPRS 246 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh--hccch
Confidence 44555555543 77777777766655 5655655554444445689999999985 68999999999999995 36778
Q ss_pred HHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHH
Q psy15592 113 KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFR 192 (294)
Q Consensus 113 k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~ 192 (294)
...++++++||.|++=|..-.-.++.++++.+|-.|+.... .+|+++|++-..+.+++=++ ..+++
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFS------------i~aQR 312 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFS------------IHAQR 312 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHH------------HHHHH
Confidence 88899999999999877664577899999999999987552 46788899877776774211 23678
Q ss_pred hHhHHHHhhhcc--CHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 193 NTSGVLRNASSA--GEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 193 ~a~~~L~nLa~~--~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
.|..+..|+|.. .++. ..+.+ .+|.|..+|... |.+..|.++..+.-+.-.-
T Consensus 313 ~AlaiaaN~Cksi~sd~f-~~v~e---alPlL~~lLs~~------D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 313 VALAIAANCCKSIRSDEF-HFVME---ALPLLTPLLSYQ------DKKPIESVCICLTRIADGF 366 (1051)
T ss_pred HHHHHHHHHHhcCCCccc-hHHHH---HHHHHHHHHhhc------cchhHHHHHHHHHHHHHhc
Confidence 888888998854 2223 33433 489999999533 4688888777776665443
No 40
>KOG0946|consensus
Probab=98.17 E-value=4.9e-05 Score=74.41 Aligned_cols=187 Identities=19% Similarity=0.150 Sum_probs=146.1
Q ss_pred ccCCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCc------ccH----------HH-HHhcCChHHHHHhhCCCCHH
Q psy15592 31 WRDPNLTEVISFLSN--PNNVIKANAAAYLQHLCYMDD------PNK----------QK-TRSLGGIPPLVKLLGHESPD 91 (294)
Q Consensus 31 ~~~g~i~~Lv~lL~s--~~~~~~~~a~~~L~nL~~~~~------~~k----------~~-i~~~g~i~~Lv~lL~s~~~~ 91 (294)
+.+.|+++|+..|+. .|+++..++..++.++..+++ ..+ .. |...+-|..|+..+...+=.
T Consensus 58 Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~ 137 (970)
T KOG0946|consen 58 VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFH 137 (970)
T ss_pred HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchh
Confidence 468889999999974 589999999999999886542 222 11 22346788999999989999
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHH-hcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHH-HHhhChHHHHHH
Q psy15592 92 VFRNACGALRNLSYGRQNDENKRAIK-NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKS-IIDDGLQVVVNH 169 (294)
Q Consensus 92 v~~~a~~aL~nLs~~~~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~-i~~~g~i~~L~~ 169 (294)
|+..+...|.+|-.. ...+.+..+. ---||..|+.+|.++ .+.++-.++-.|+.|......-+. +.-+.+..-|..
T Consensus 138 VR~~aIqLlsalls~-r~~e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfs 215 (970)
T KOG0946|consen 138 VRLYAIQLLSALLSC-RPTELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFS 215 (970)
T ss_pred hhhHHHHHHHHHHhc-CCHHHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHH
Confidence 999999999999874 3555565555 678999999999984 778888899899999876544444 445888888888
Q ss_pred hhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHH
Q psy15592 170 IIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKS 228 (294)
Q Consensus 170 ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~ 228 (294)
++...-|.+ . -.|++.|...|-||-..+..+.+.+++ .+.||+|.++|..
T Consensus 216 IIeeEGg~d-G-------gIVveDCL~ll~NLLK~N~SNQ~~FrE-~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 216 IIEEEGGLD-G-------GIVVEDCLILLNNLLKNNISNQNFFRE-GSYIPRLLKLLSV 265 (970)
T ss_pred HHHhcCCCC-C-------cchHHHHHHHHHHHHhhCcchhhHHhc-cccHHHHHhhcCc
Confidence 886432222 2 137888999999999988889999999 7999999988853
No 41
>KOG4646|consensus
Probab=98.16 E-value=2.4e-05 Score=61.30 Aligned_cols=128 Identities=15% Similarity=0.131 Sum_probs=103.8
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhH
Q psy15592 78 IPPLVKLLGH-ESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKK 156 (294)
Q Consensus 78 i~~Lv~lL~s-~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~ 156 (294)
+..||.-... .+.+.++....-|-|.++ ++.|-..+.+.++++..+..|.. .+..+.+-+.+.|||++-++.++.
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAY---DP~Nys~Lrql~vLdlFvdsl~e-~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAY---DPINYSHLRQLDVLDLFVDSLEE-QNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcc---CcchHHHHHHhhHHHHHHHHhhc-ccHHHHHHhHHHHHhhccChHHHH
Confidence 4566664443 578889988889999999 89999999999999999999988 599999999999999999999999
Q ss_pred HHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHH
Q psy15592 157 SIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVV 226 (294)
Q Consensus 157 ~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL 226 (294)
.|.+.+.+++++..+.+ .....+..+...+.-|+..+...|..+.. |..+..+
T Consensus 94 ~I~ea~g~plii~~lss------------p~e~tv~sa~~~l~~l~~~~Rt~r~ell~-----p~Vv~~v 146 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSS------------PPEITVHSAALFLQLLEFGERTERDELLS-----PAVVRTV 146 (173)
T ss_pred HHHHhcCCceEEeecCC------------ChHHHHHHHHHHHHHhcCcccchhHHhcc-----HHHHHHH
Confidence 99999999888876631 11446778889999999877666665554 4445555
No 42
>KOG2973|consensus
Probab=98.16 E-value=6.5e-05 Score=66.46 Aligned_cols=191 Identities=21% Similarity=0.213 Sum_probs=134.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRS-LGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~-~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
+..+|++|.+.+|.++..|...+..++-. ..+..... ...++.+.++++...+ ...|+.+|.|++. +...+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq---~~~l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ---KEELRK 77 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh---hHHHHH
Confidence 46789999999999999999999988843 33333322 2457888888887766 6788899999996 777788
Q ss_pred HHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHH---h----hChHHHHHHhhccCCCCCCCCCCccch
Q psy15592 115 AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSII---D----DGLQVVVNHIIIPHSGWDPVSAGETCW 187 (294)
Q Consensus 115 ~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~---~----~g~i~~L~~ll~~~s~~~~~~~~~~~~ 187 (294)
.+.+. -+..++.++.+ ....+....+.+|.|++..++....+. . .|++.+...... .+.. .
T Consensus 78 ~ll~~-~~k~l~~~~~~-p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d-~~~n---------~ 145 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDMLTD-PQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCD-KSYN---------A 145 (353)
T ss_pred HHHHH-HHHHHHHHhcC-cccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhC-cccc---------c
Confidence 88766 77777777766 356788889999999999887766554 2 577777776664 2221 1
Q ss_pred hhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHH--HHHHHHHHhHhhcCCCcc-hHHHHHHHHHHhccCC
Q psy15592 188 STIFRNTSGVLRNASSAGEYARKKLRECEGLID--SLLYVVKSAIEKSNIGNK-SVENCVCILRNLSFRC 254 (294)
Q Consensus 188 ~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~--~Lv~lL~~~~~~~~~~~~-~~e~a~~~L~nLs~~~ 254 (294)
.+-+.+.+.++.||+... ..|..+.+ ...++ .|+.+-. ++.. -+...+++|+|.||..
T Consensus 146 ~a~f~ylA~vf~nls~~~-~gR~l~~~-~k~~p~~kll~ft~-------~~s~vRr~GvagtlkN~cFd~ 206 (353)
T KOG2973|consen 146 YAEFHYLAPVFANLSQFE-AGRKLLLE-PKRFPDQKLLPFTS-------EDSQVRRGGVAGTLKNCCFDA 206 (353)
T ss_pred ccchhHHHHHHHHHhhhh-hhhhHhcc-hhhhhHhhhhcccc-------cchhhhccchHHHHHhhhccc
Confidence 224677888999999876 48887766 33221 1222211 1222 4567899999999875
No 43
>KOG2759|consensus
Probab=98.12 E-value=0.0001 Score=67.69 Aligned_cols=204 Identities=13% Similarity=0.119 Sum_probs=145.1
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy15592 39 VISFLSN-PNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE--SPDVFRNACGALRNLSYGRQNDENKRA 115 (294)
Q Consensus 39 Lv~lL~s-~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~aL~nLs~~~~~~~~k~~ 115 (294)
|-..+++ .+.+....|+++|.-+.+. ++.|-.+....|+..++..+.+. +-.++-..+-++|-|++ ++...+.
T Consensus 161 l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF---n~~~ae~ 236 (442)
T KOG2759|consen 161 LKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF---NPHAAEK 236 (442)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc---CHHHHHH
Confidence 3344444 6778888999999999964 78999999999999999988543 44788899999999999 7777788
Q ss_pred HHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccc-------hhhHHHHhhChHHHHHHhhccCCCCCCCCCC-----
Q psy15592 116 IKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE-------DLKKSIIDDGLQVVVNHIIIPHSGWDPVSAG----- 183 (294)
Q Consensus 116 i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-------~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~----- 183 (294)
+...+.|+.|.++++.+..+.+.+-++++++|+.... +....++..++++.+..+. ..+++++...
T Consensus 237 ~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~--~rkysDEDL~~di~~ 314 (442)
T KOG2759|consen 237 LKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLE--ERKYSDEDLVDDIEF 314 (442)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHH--hcCCCcHHHHHHHHH
Confidence 8889999999999999778889999999999996644 4456677778877776555 2233332210
Q ss_pred --------------------------------ccchhhHHHhHh----------HHH--------------------Hhh
Q psy15592 184 --------------------------------ETCWSTIFRNTS----------GVL--------------------RNA 201 (294)
Q Consensus 184 --------------------------------~~~~~~v~~~a~----------~~L--------------------~nL 201 (294)
+.+..-..+|+. ..| ...
T Consensus 315 L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~ 394 (442)
T KOG2759|consen 315 LTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEY 394 (442)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHH
Confidence 000000111111 111 111
Q ss_pred hccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 202 SSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 202 a~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
-..-|+.+..+.+. |+=..++.++ +..|++++-+|+-++.-|-.+.+
T Consensus 395 Vr~yP~gk~vv~k~-ggKe~vM~Ll------nh~d~~Vry~ALlavQ~lm~~~w 441 (442)
T KOG2759|consen 395 VRHYPEGKAVVEKY-GGKERVMNLL------NHEDPEVRYHALLAVQKLMVHNW 441 (442)
T ss_pred HHhCchHhHHHHHh-chHHHHHHHh------cCCCchHHHHHHHHHHHHHhhcc
Confidence 12345677778884 8888899998 45678999999999887766553
No 44
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=98.11 E-value=1.7e-05 Score=59.46 Aligned_cols=68 Identities=31% Similarity=0.459 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhc
Q psy15592 50 IKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGH--ESPDVFRNACGALRNLSYGRQNDENKRAIKNA 119 (294)
Q Consensus 50 ~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s--~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~ 119 (294)
++.....+|.|+++.+..++..+++.||||.++....- .+|-+++.|..+++||+.+ +++|+..|.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~--n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG--NPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC--CHHHHHHHHhc
Confidence 45677899999999999999999999999999997754 5788999999999999986 99999988753
No 45
>PRK09687 putative lyase; Provisional
Probab=98.05 E-value=0.00015 Score=64.85 Aligned_cols=64 Identities=20% Similarity=0.086 Sum_probs=40.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhh
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKL-LGHESPDVFRNACGALRNLS 104 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~l-L~s~~~~v~~~a~~aL~nLs 104 (294)
.++.+.+++.++++.+|..|+++|..+-.. ... ....++.|..+ ++++++.|+..|+.+|.++.
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~-~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~ 119 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMA-KRC-----QDNVFNILNNLALEDKSACVRASAINATGHRC 119 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-ccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 456677777777777777777777776532 111 11234566655 55667777777777777764
No 46
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=98.03 E-value=1.2e-05 Score=49.62 Aligned_cols=39 Identities=46% Similarity=0.645 Sum_probs=36.5
Q ss_pred cccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy15592 66 DPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLS 104 (294)
Q Consensus 66 ~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs 104 (294)
++++..+++.|++++|+++|++++++++..++++|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 358889999999999999999999999999999999997
No 47
>PRK09687 putative lyase; Provisional
Probab=98.03 E-value=0.00018 Score=64.37 Aligned_cols=98 Identities=15% Similarity=0.079 Sum_probs=76.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhH
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENK 113 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k 113 (294)
-.++.|.++|.+++..++..|+.+|..+-. ...++.+..+++++++.++..|+++|..|.. .+..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~---~~~~- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGM---AKRC- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---Cccc-
Confidence 347899999999999999999999987651 2236678888999999999999999999874 2211
Q ss_pred HHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 114 RAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 114 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
....++.|..++...+++.++..++.+|.++..
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCK 120 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccc
Confidence 123557777774444689999999999999853
No 48
>KOG3678|consensus
Probab=98.02 E-value=0.00014 Score=67.65 Aligned_cols=171 Identities=15% Similarity=0.232 Sum_probs=132.3
Q ss_pred ccccCCCHHHHHHhhcCCCHHH--HHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhc
Q psy15592 29 LRWRDPNLTEVISFLSNPNNVI--KANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGH-ESPDVFRNACGALRNLSY 105 (294)
Q Consensus 29 ~i~~~g~i~~Lv~lL~s~~~~~--~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~aL~nLs~ 105 (294)
.|...|+++.|++++.+++.+. +..|+..|-.+. ..+|+..+..-| +..++.+-+. ..++.++..++.|.++-.
T Consensus 175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 4667899999999999998876 889999998866 358899998876 5555555544 466899999999999997
Q ss_pred CCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc--cchhhHHHHhhChHHHHHHhhccCCCCCCCCCC
Q psy15592 106 GRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS--CEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAG 183 (294)
Q Consensus 106 ~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~--~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~ 183 (294)
| +.+....+++.|+++.++--++. .++.+.+.+.-+|.|++- +...+..|++..+..-|.-+- ++
T Consensus 252 H--Seet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA--~s-------- 318 (832)
T KOG3678|consen 252 H--SEETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA--FS-------- 318 (832)
T ss_pred h--hHHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh--cc--------
Confidence 5 88889999999999999988888 489999999999999986 457788898877776665443 11
Q ss_pred ccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcH
Q psy15592 184 ETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLI 219 (294)
Q Consensus 184 ~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i 219 (294)
.|..+..+||-+..-|+.+.+ ....++. .|-+
T Consensus 319 --kDel~R~~AClAV~vlat~KE-~E~~Vrk-S~Tl 350 (832)
T KOG3678|consen 319 --KDELLRLHACLAVAVLATNKE-VEREVRK-SGTL 350 (832)
T ss_pred --hHHHHHHHHHHHHhhhhhhhh-hhHHHhh-ccch
Confidence 134466788888888888764 4445555 3543
No 49
>KOG2171|consensus
Probab=97.94 E-value=0.00036 Score=71.13 Aligned_cols=225 Identities=15% Similarity=0.088 Sum_probs=138.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCChhhH
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGH-ESPDVFRNACGALRNLSYGRQNDENK 113 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~aL~nLs~~~~~~~~k 113 (294)
.++.++..|++++|.+|..|+.+++-++.+-..--..-...-.++.|+..+.+ .+++++.+|+.+|-|++.. .+...
T Consensus 390 Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~--~~~~~ 467 (1075)
T KOG2171|consen 390 ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE--CDKSI 467 (1075)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh--CcHHH
Confidence 35667788899999999999999999985422212122222456788888877 4779999999999999962 33222
Q ss_pred HHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHh
Q psy15592 114 RAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRN 193 (294)
Q Consensus 114 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~ 193 (294)
-.-+=.+.+.+++.+|..++.+.+++.++.+|...|.....+-.=.-..++|.|..++.+..+.+. ..+..+
T Consensus 468 l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~--------r~Lrgk 539 (1075)
T KOG2171|consen 468 LEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDL--------RELRGK 539 (1075)
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhh--------HHHHhh
Confidence 222223444545555655579999999999999988755433222235677999999953322111 234455
Q ss_pred HhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHh-HhhcCCCcchHHHHHHHHHHhccCCccccCCCCCCCCCccccc
Q psy15592 194 TSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSA-IEKSNIGNKSVENCVCILRNLSFRCQEVEDPNYDKHPVVSQSR 272 (294)
Q Consensus 194 a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~-~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 272 (294)
+..|+.-++.. -+|+.+... ...+++++... ......|+...+--.+...++|.-.. .+-.++-+..-++--+
T Consensus 540 tmEcisli~~A--VGke~F~~~---a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg-~~F~p~L~~Vmppl~~ 613 (1075)
T KOG2171|consen 540 TMECLSLIARA--VGKEKFLPL---AEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILG-DDFAPFLPVVMPPLLK 613 (1075)
T ss_pred HHHHHHHHHHH--hhhhhhhHh---HHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhc-hhhHhHHHHHhHHHHH
Confidence 55666666542 244555443 33445554432 11233455788888888888998775 3444444444444333
Q ss_pred CCC
Q psy15592 273 TSP 275 (294)
Q Consensus 273 ~~~ 275 (294)
+..
T Consensus 614 ta~ 616 (1075)
T KOG2171|consen 614 TAR 616 (1075)
T ss_pred hhc
Confidence 333
No 50
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.90 E-value=3.9e-05 Score=55.74 Aligned_cols=87 Identities=34% Similarity=0.531 Sum_probs=69.8
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 36 LTEVISFL-SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 36 i~~Lv~lL-~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
|+.|++.| +++++.+|..++.+|..+- ++ ..++.|+.+++++++.++..|+.+|..+- +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----~----- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG----D----- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----H-----
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----C-----
Confidence 68899999 8999999999999998432 11 23889999999999999999999988775 2
Q ss_pred HHHhcCChHHHHHHhccCCCHHHHHHHHHHHH
Q psy15592 115 AIKNAGGIPLLINLLRKTADAEVKELVTGVLW 146 (294)
Q Consensus 115 ~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~ 146 (294)
..+++.|.+++.+..+..++..+..+|.
T Consensus 61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2378899999988667777888887763
No 51
>PF05536 Neurochondrin: Neurochondrin
Probab=97.80 E-value=0.0018 Score=63.22 Aligned_cols=154 Identities=19% Similarity=0.235 Sum_probs=119.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc---cHHHHHhcCChHHHHHhhCC-------CCHHHHHHHHHHHHHhh
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDP---NKQKTRSLGGIPPLVKLLGH-------ESPDVFRNACGALRNLS 104 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~---~k~~i~~~g~i~~Lv~lL~s-------~~~~v~~~a~~aL~nLs 104 (294)
.++.-+.+|++.+.+-|..+...+.+++..++. .+..|.+.=|.+.|-++|++ +....+.-|+..|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 467788999998866677777788888865543 23457788788999999987 23467888888999999
Q ss_pred cCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCc
Q psy15592 105 YGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGE 184 (294)
Q Consensus 105 ~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~ 184 (294)
. +++....--=.+-||.|++++.+..+.++...+..+|..+++.++.+..+++.|.++.+..++.. +
T Consensus 86 ~---~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~--~-------- 152 (543)
T PF05536_consen 86 R---DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN--Q-------- 152 (543)
T ss_pred C---ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh--C--------
Confidence 6 55554222223689999999988645599999999999999999999999999999999999842 1
Q ss_pred cchhhHHHhHhHHHHhhhcc
Q psy15592 185 TCWSTIFRNTSGVLRNASSA 204 (294)
Q Consensus 185 ~~~~~v~~~a~~~L~nLa~~ 204 (294)
....+.+..+|.++...
T Consensus 153 ---~~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 153 ---SFQMEIALNLLLNLLSR 169 (543)
T ss_pred ---cchHHHHHHHHHHHHHh
Confidence 12567788888888654
No 52
>KOG2759|consensus
Probab=97.80 E-value=0.00057 Score=62.92 Aligned_cols=175 Identities=17% Similarity=0.144 Sum_probs=128.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCC-hHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCChhhH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGG-IPPLVKLLGH-ESPDVFRNACGALRNLSYGRQNDENK 113 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~-i~~Lv~lL~s-~~~~v~~~a~~aL~nLs~~~~~~~~k 113 (294)
-+..+++|...+.-+.....+++..++. ....+....+... ...|-.+|++ .+.+....|+++|..+.. .++.|
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~-~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~---~~eyR 191 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLAC-FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR---VDEYR 191 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHH-hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc---Ccchh
Confidence 4567788878888777778888887663 2222222211111 1344455665 567788888999999997 88999
Q ss_pred HHHHhcCChHHHHHHh-ccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHH
Q psy15592 114 RAIKNAGGIPLLINLL-RKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFR 192 (294)
Q Consensus 114 ~~i~~~g~i~~Lv~lL-~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~ 192 (294)
..++.++|+..++..+ ....+-++|.+.+-|+|-|+.++...+.+..-++++.|..++.. ..-+.|.+
T Consensus 192 ~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~-----------~~KEKV~R 260 (442)
T KOG2759|consen 192 YAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKE-----------STKEKVTR 260 (442)
T ss_pred heeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHH-----------HHHHHHHH
Confidence 9999999999999999 44457889999999999999999999888788999999999952 12256899
Q ss_pred hHhHHHHhhhccCH------HHHHHHHhhcCcHHHHHHHHH
Q psy15592 193 NTSGVLRNASSAGE------YARKKLRECEGLIDSLLYVVK 227 (294)
Q Consensus 193 ~a~~~L~nLa~~~~------~~r~~~~~~~g~i~~Lv~lL~ 227 (294)
-++++++|+...++ +....|+. .++ +.-++.|.
T Consensus 261 ivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v-~k~l~~L~ 299 (442)
T KOG2759|consen 261 IVLAIFRNLLDKGPDRETKKDIASQMVL-CKV-LKTLQSLE 299 (442)
T ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHh-cCc-hHHHHHHH
Confidence 99999999987663 33456776 354 45555553
No 53
>KOG0946|consensus
Probab=97.76 E-value=0.0021 Score=63.36 Aligned_cols=215 Identities=17% Similarity=0.261 Sum_probs=154.6
Q ss_pred CCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCCC
Q psy15592 33 DPNLTEVISFLS-NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE--SPDVFRNACGALRNLSYGRQN 109 (294)
Q Consensus 33 ~g~i~~Lv~lL~-s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~aL~nLs~~~~~ 109 (294)
+..|+.|++-+. ++-.+-|+.|+..|-.+++ ++|..+... |+++|++.|+.+ ++++...++.++.++..+++.
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 445888888774 5666779999999998884 577666655 699999999975 789999999999999974210
Q ss_pred ----hhh----------HHHHH-hcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc--chhhHHHHh-hChHHHHHHhh
Q psy15592 110 ----DEN----------KRAIK-NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC--EDLKKSIID-DGLQVVVNHII 171 (294)
Q Consensus 110 ----~~~----------k~~i~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~--~~~r~~i~~-~g~i~~L~~ll 171 (294)
+.. ...++ ..+.|..|+..+... |-.++..+.-.|-++-++ .+.+..++. --++..++.++
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 011 13333 678899999999884 889999999999999554 478888876 35566666666
Q ss_pred ccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCC-cchHHHHHHHHHHh
Q psy15592 172 IPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIG-NKSVENCVCILRNL 250 (294)
Q Consensus 172 ~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~-~~~~e~a~~~L~nL 250 (294)
.+ .+ ..|.-.+.-.|.-|..+++ ..+.++.+++++..|..++... +..| .-+++-|+..|.||
T Consensus 176 ~D-----sr-------E~IRNe~iLlL~eL~k~n~-~IQKlVAFENaFerLfsIIeeE---Gg~dGgIVveDCL~ll~NL 239 (970)
T KOG0946|consen 176 RD-----SR-------EPIRNEAILLLSELVKDNS-SIQKLVAFENAFERLFSIIEEE---GGLDGGIVVEDCLILLNNL 239 (970)
T ss_pred hh-----hh-------hhhchhHHHHHHHHHccCc-hHHHHHHHHHHHHHHHHHHHhc---CCCCCcchHHHHHHHHHHH
Confidence 31 11 2244557778888888886 4555666689999999999754 2233 36899999999999
Q ss_pred ccCCccccCCCCCCCCCccc
Q psy15592 251 SFRCQEVEDPNYDKHPVVSQ 270 (294)
Q Consensus 251 s~~~~~~~~~~~~~~~~~~~ 270 (294)
-..+ ..-.++...+.|.+
T Consensus 240 LK~N--~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 240 LKNN--ISNQNFFREGSYIP 257 (970)
T ss_pred HhhC--cchhhHHhccccHH
Confidence 8766 23334444444443
No 54
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.72 E-value=0.0009 Score=63.83 Aligned_cols=196 Identities=18% Similarity=0.158 Sum_probs=135.5
Q ss_pred HHHHHHhhcCCcccHHHHHhcCChHHHHHhh----------CCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHH
Q psy15592 55 AAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL----------GHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPL 124 (294)
Q Consensus 55 ~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL----------~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~ 124 (294)
..+|..+++ ++.+...+....++..|+++- ...+.++...|+++|.|+.+. ++..|..+.+.|+.+.
T Consensus 2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~--s~~aR~~~~~~~~~~~ 78 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFL--SPSARQIFVDLGLAEK 78 (446)
T ss_pred HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhC--CHHHHHHHHHcCcHHH
Confidence 456666774 456666776666677776654 345788999999999999995 8889999999999999
Q ss_pred HHHHhccC----CCHHHHHHHHHHHHHhcc-cchhhHHHHhh-ChHHHHHHhhccCCCCCCCCC-----CccchhhHHHh
Q psy15592 125 LINLLRKT----ADAEVKELVTGVLWNLSS-CEDLKKSIIDD-GLQVVVNHIIIPHSGWDPVSA-----GETCWSTIFRN 193 (294)
Q Consensus 125 Lv~lL~~~----~~~~~~~~a~~~L~nLs~-~~~~r~~i~~~-g~i~~L~~ll~~~s~~~~~~~-----~~~~~~~v~~~ 193 (294)
+++.|+.. .+.+......++|.-+.. ..+.+..++++ +++..+...+..+.+...... ....+......
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 99999874 267777788888877754 56788888865 677777666643222110000 11234567788
Q ss_pred HhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHh---HhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 194 TSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSA---IEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 194 a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~---~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
+.+.+.|+....+.... .+....++.|+.++... .....+......+++-+|.|+-....
T Consensus 159 iLKllFNit~~~~~~~~--~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~ 221 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVP--EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECL 221 (446)
T ss_pred HHHHHHHhhhccCcccc--hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHH
Confidence 99999999876542222 11245577777777655 43444556788899999999866553
No 55
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.72 E-value=9.7e-05 Score=45.45 Aligned_cols=40 Identities=48% Similarity=0.679 Sum_probs=36.0
Q ss_pred hhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 110 DENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 110 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
++++..+++.|+++.|+++|.+ .+.++++.++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKS-EDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcC
Confidence 3488999999999999999986 599999999999999973
No 56
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.71 E-value=0.0018 Score=67.04 Aligned_cols=105 Identities=27% Similarity=0.353 Sum_probs=65.7
Q ss_pred cCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc------
Q psy15592 32 RDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSY------ 105 (294)
Q Consensus 32 ~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~------ 105 (294)
+.+.++.|++.|.++++.+|..|+.+|..+.. .+.++.|+.+|+++++.++..|+.+|..+..
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~ 687 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAP 687 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchH
Confidence 45567888899999999999999888887541 2246777788888888888888777776631
Q ss_pred ------CCCChhhHHHHHh------cCChHHHHHHhccCCCHHHHHHHHHHHHHh
Q psy15592 106 ------GRQNDENKRAIKN------AGGIPLLINLLRKTADAEVKELVTGVLWNL 148 (294)
Q Consensus 106 ------~~~~~~~k~~i~~------~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nL 148 (294)
.+.++..|...++ .+....|+..|++ .++.++..++.+|..+
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D-~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGD-PDHRVRIEAVRALVSV 741 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcC-CCHHHHHHHHHHHhcc
Confidence 0011222222211 1233455556655 3666666666666554
No 57
>KOG2171|consensus
Probab=97.51 E-value=0.011 Score=60.67 Aligned_cols=173 Identities=18% Similarity=0.156 Sum_probs=115.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHh-c-CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRS-L-GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENK 113 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~-~-g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k 113 (294)
++.+-.+|.|++...|..+..+|..++-... +.+.. . ..++..+..|+++++.|+..|+.+++-++.+ -...-
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~---~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~std--l~p~i 424 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCS---DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTD--LQPEI 424 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhh--hcHHH
Confidence 4566677889999999999999999884432 23332 2 3567888899999999999999999999962 22223
Q ss_pred HHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHH--hhChHH-HHHHhhccCCCCCCCCCCccchhhH
Q psy15592 114 RAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSII--DDGLQV-VVNHIIIPHSGWDPVSAGETCWSTI 190 (294)
Q Consensus 114 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~--~~g~i~-~L~~ll~~~s~~~~~~~~~~~~~~v 190 (294)
..-...-.++.|+..+.+..++.++..++.+|-|++..-. +..+. =.+++. .+..++. ++ ...+
T Consensus 425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~--~~----------~~~v 491 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQ--SS----------KPYV 491 (1075)
T ss_pred HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhc--CC----------chhH
Confidence 3333456778999999887788999999999999976432 12222 145554 4433331 11 1358
Q ss_pred HHhHhHHHHhhhccCHHHHHHHHhh-cCcHHHHHHHHHHh
Q psy15592 191 FRNTSGVLRNASSAGEYARKKLREC-EGLIDSLLYVVKSA 229 (294)
Q Consensus 191 ~~~a~~~L~nLa~~~~~~r~~~~~~-~g~i~~Lv~lL~~~ 229 (294)
+++++.++.-.|...+ ..+..+ .-.+|.|.++|.+.
T Consensus 492 ~e~vvtaIasvA~AA~---~~F~pY~d~~Mp~L~~~L~n~ 528 (1075)
T KOG2171|consen 492 QEQAVTAIASVADAAQ---EKFIPYFDRLMPLLKNFLQNA 528 (1075)
T ss_pred HHHHHHHHHHHHHHHh---hhhHhHHHHHHHHHHHHHhCC
Confidence 8888888888875432 233332 34455666666544
No 58
>KOG3678|consensus
Probab=97.50 E-value=0.00061 Score=63.62 Aligned_cols=146 Identities=14% Similarity=0.189 Sum_probs=118.2
Q ss_pred ccccccccccCCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q psy15592 23 KCRNSSLRWRDPNLTEVISFLS-NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALR 101 (294)
Q Consensus 23 ~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~ 101 (294)
..+|++.++..| +..+..+-+ ...++.....+..|.++-+++++....++..||+.+++--.+..++.+.++|+-+|.
T Consensus 211 ~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~ 289 (832)
T KOG3678|consen 211 VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALG 289 (832)
T ss_pred hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhh
Confidence 356777776655 333333323 455688889999999999888888999999999999999999999999999999999
Q ss_pred HhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhh
Q psy15592 102 NLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHII 171 (294)
Q Consensus 102 nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll 171 (294)
|.+.+ ...+.+..|++..+.+.|+-+-.+ .|.-++..+|-+.+-|+++.+.-..+...|.+.++.-++
T Consensus 290 N~~L~-~~~a~qrrmveKr~~EWLF~LA~s-kDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlv 357 (832)
T KOG3678|consen 290 NCALH-GGQAVQRRMVEKRAAEWLFPLAFS-KDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLV 357 (832)
T ss_pred hhhhh-chhHHHHHHHHhhhhhhhhhhhcc-hHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhh
Confidence 99984 567789999999999999887766 488899999999999999998877777777766555544
No 59
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.0016 Score=61.85 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=104.1
Q ss_pred cccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccc-HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy15592 26 NSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPN-KQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLS 104 (294)
Q Consensus 26 ~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~-k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs 104 (294)
-+....+.|.|..|+.++.+.|..+|.+..|+++++.++.+++ +-++...-|+..++.+..+++-.++..+...|+|++
T Consensus 465 L~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 465 LGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred hHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 3445567889999999999999999999999999999876543 446677789999999999999999999999999999
Q ss_pred cCCCChh---hHHHHHhcCChHHHHH----HhccCCCHHHHHHHHHHHHHhcccchh-hHHHHh-hChHHHHHHhhc
Q psy15592 105 YGRQNDE---NKRAIKNAGGIPLLIN----LLRKTADAEVKELVTGVLWNLSSCEDL-KKSIID-DGLQVVVNHIII 172 (294)
Q Consensus 105 ~~~~~~~---~k~~i~~~g~i~~Lv~----lL~~~~~~~~~~~a~~~L~nLs~~~~~-r~~i~~-~g~i~~L~~ll~ 172 (294)
+. ... .+....+..-.+.|.+ .++...+.++ +..+-.|.+++.++++ +..+.+ ..++..+.+++.
T Consensus 545 c~--~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i-~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~ 618 (743)
T COG5369 545 CD--TSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEI-LEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILD 618 (743)
T ss_pred cc--cccccccceeEEecChHHHHHHHHHHHHHhcCchhh-hhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHH
Confidence 83 222 3444444444444444 4444334444 4557788888776655 444443 566777777764
No 60
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.44 E-value=0.0058 Score=63.39 Aligned_cols=103 Identities=18% Similarity=0.169 Sum_probs=56.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCC------------cccHHHH----HhcCChHHHHHhhCCCCHHHHHHHHHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMD------------DPNKQKT----RSLGGIPPLVKLLGHESPDVFRNACGA 99 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~------------~~~k~~i----~~~g~i~~Lv~lL~s~~~~v~~~a~~a 99 (294)
.+.|...|.++++.+|..|+.+|..+...+ +..|... ...+..+.|..++.+++++++..++.+
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~a 765 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKG 765 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHH
Confidence 367778888888888888888777653111 0011110 011222334444444444444444444
Q ss_pred HHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 100 LRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 100 L~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
|..+.. . +...++.|..++++ +++.++..++.+|..+..
T Consensus 766 L~~~~~----~-------~~~~~~~L~~ll~D-~d~~VR~aA~~aLg~~g~ 804 (897)
T PRK13800 766 LATLGA----G-------GAPAGDAVRALTGD-PDPLVRAAALAALAELGC 804 (897)
T ss_pred HHHhcc----c-------cchhHHHHHHHhcC-CCHHHHHHHHHHHHhcCC
Confidence 444432 0 11235777777777 478888888888877644
No 61
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.00068 Score=64.21 Aligned_cols=188 Identities=16% Similarity=0.105 Sum_probs=134.9
Q ss_pred cccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy15592 28 SLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGR 107 (294)
Q Consensus 28 ~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~ 107 (294)
-.+.+....+.|++.|+.|+--+..-+...++|..-.....+..+.+.|.|..|+.++.+.+..++.+..|.|+.+.++
T Consensus 425 TgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyn- 503 (743)
T COG5369 425 TGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYN- 503 (743)
T ss_pred hhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhc-
Confidence 3455677889999999887777777888889997766667888999999999999999999999999999999999995
Q ss_pred CChhh-HHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc----cchhhHHHHhhChH----HHHHHhhccCCCCC
Q psy15592 108 QNDEN-KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS----CEDLKKSIIDDGLQ----VVVNHIIIPHSGWD 178 (294)
Q Consensus 108 ~~~~~-k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~----~~~~r~~i~~~g~i----~~L~~ll~~~s~~~ 178 (294)
++.+ +-.....-|+..++.+..+ +.-.++.+++-+|+|+.- +++-++.++..--. ..+..-+. +..
T Consensus 504 -cq~~ekf~~Lakig~~kvl~~~ND-pc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e--~~n- 578 (743)
T COG5369 504 -CQKNEKFKFLAKIGVEKVLSYTND-PCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYE--ENN- 578 (743)
T ss_pred -CcchhhhhhHHhcCHHHHHHHhcC-cccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHH--hcC-
Confidence 4333 6677788899999999988 588999999999999953 23334444433222 33333331 111
Q ss_pred CCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhH
Q psy15592 179 PVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAI 230 (294)
Q Consensus 179 ~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~ 230 (294)
+..+... +-+|-+++..++.-+..+.+....+..+.++|....
T Consensus 579 --------p~~i~~~-~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a 621 (743)
T COG5369 579 --------PMEILEG-CYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFA 621 (743)
T ss_pred --------chhhhhh-HHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHc
Confidence 1234333 445555655555566666655677777777776543
No 62
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.40 E-value=0.0053 Score=59.48 Aligned_cols=183 Identities=19% Similarity=0.234 Sum_probs=101.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRA 115 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~ 115 (294)
++.+.+++.++++.+|..|+.++..+...+++. +... -++.+..+|.+.++.++..|+.++..+.. ++.....
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~---~~~~~~~ 188 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKC---NDDSYKS 188 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHC---THHHHTT
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHcc---Ccchhhh
Confidence 556666666777777777777777666444332 1221 25667777776777777777777777721 2222111
Q ss_pred HHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHh
Q psy15592 116 IKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTS 195 (294)
Q Consensus 116 i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~ 195 (294)
+. ...+..|.+++.. .++-.+...+.+|..++........- ..+++.+..++. +....|+..|+
T Consensus 189 ~~-~~~~~~L~~~l~~-~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~------------s~~~~V~~e~~ 252 (526)
T PF01602_consen 189 LI-PKLIRILCQLLSD-PDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQ------------SSSPSVVYEAI 252 (526)
T ss_dssp HH-HHHHHHHHHHHTC-CSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred hH-HHHHHHhhhcccc-cchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhh------------ccccHHHHHHH
Confidence 11 1122333333333 46666666666666665533211100 234444444442 22345777777
Q ss_pred HHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 196 GVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 196 ~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
.++..+....+ +. ..+++.|+.++. ..++.++--++..|..++...
T Consensus 253 ~~i~~l~~~~~-----~~--~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 253 RLIIKLSPSPE-----LL--QKAINPLIKLLS------SSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHSSSHH-----HH--HHHHHHHHHHHT------SSSHHHHHHHHHHHHHHCCHC
T ss_pred HHHHHhhcchH-----HH--HhhHHHHHHHhh------cccchhehhHHHHHHHhhccc
Confidence 77777776443 21 255778888883 334568888888888887665
No 63
>PF05536 Neurochondrin: Neurochondrin
Probab=97.37 E-value=0.0062 Score=59.51 Aligned_cols=156 Identities=20% Similarity=0.151 Sum_probs=120.5
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCCh---hhHHHHHhcCChHHHHHHhccC------CCHHHHHHHHHHHHHh
Q psy15592 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQND---ENKRAIKNAGGIPLLINLLRKT------ADAEVKELVTGVLWNL 148 (294)
Q Consensus 78 i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~---~~k~~i~~~g~i~~Lv~lL~~~------~~~~~~~~a~~~L~nL 148 (294)
+...+.+|+..+.+-+..++-.+..+..+ ++ ..+..+.++=|.+.|-++|+.+ +....+.-++.+|..+
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~--~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDA--DDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCC--chhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 56778899998888888888889999863 33 2355688888899999999873 2356777889999999
Q ss_pred cccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHH
Q psy15592 149 SSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKS 228 (294)
Q Consensus 149 s~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~ 228 (294)
+..++....=--.+-+|.++.++...++ ..+...|..||..+++.+ ++++.+.+ .|.++.|++.+.+
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~-----------~~~v~dalqcL~~Ias~~-~G~~aLl~-~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSD-----------LETVDDALQCLLAIASSP-EGAKALLE-SGAVPALCEIIPN 151 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCc-----------hhHHHHHHHHHHHHHcCc-HhHHHHHh-cCCHHHHHHHHHh
Confidence 9988765322224668888888852211 247788999999999655 69999999 6999999999975
Q ss_pred hHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 229 AIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 229 ~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
+ +...|.|+.+|.+++....
T Consensus 152 ~-------~~~~E~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 152 Q-------SFQMEIALNLLLNLLSRLG 171 (543)
T ss_pred C-------cchHHHHHHHHHHHHHhcc
Confidence 2 4789999999999998763
No 64
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.26 E-value=0.022 Score=54.39 Aligned_cols=220 Identities=14% Similarity=0.156 Sum_probs=144.4
Q ss_pred ccccccccCCCHHHHHHhh----------cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC-----C
Q psy15592 25 RNSSLRWRDPNLTEVISFL----------SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE-----S 89 (294)
Q Consensus 25 ~~~~~i~~~g~i~~Lv~lL----------~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~-----~ 89 (294)
.+.+.+....++..|.++- ..++.++...|..+|+|+.|.++..|..+.+.|+.+.++..|+.. +
T Consensus 13 ~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~ 92 (446)
T PF10165_consen 13 TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQP 92 (446)
T ss_pred ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCC
Confidence 3455566666666666654 356788999999999999999999999999999999999999986 7
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHH-hcCChHHHHHHhcc--------C--------CCHHHHHHHHHHHHHhcccc
Q psy15592 90 PDVFRNACGALRNLSYGRQNDENKRAIK-NAGGIPLLINLLRK--------T--------ADAEVKELVTGVLWNLSSCE 152 (294)
Q Consensus 90 ~~v~~~a~~aL~nLs~~~~~~~~k~~i~-~~g~i~~Lv~lL~~--------~--------~~~~~~~~a~~~L~nLs~~~ 152 (294)
.++.....+.|.-++.. ....+..++ +.+++..++..|.. . .+......++.++.|+....
T Consensus 93 ~d~~Fl~~RLLFLlTa~--~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~ 170 (446)
T PF10165_consen 93 SDVEFLDSRLLFLLTAL--RPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHY 170 (446)
T ss_pred hhHHHHHHHHHHHHhcC--ChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhcc
Confidence 78999999999999874 556666666 56888888886632 0 14455667889999996543
Q ss_pred hhh-H-HHH-h-hChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHH-------HH----HHHhhcC
Q psy15592 153 DLK-K-SII-D-DGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYA-------RK----KLRECEG 217 (294)
Q Consensus 153 ~~r-~-~i~-~-~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~-------r~----~~~~~~g 217 (294)
... . ... . ..++.++..++.+ .... ......+.++..+|.|+--..... .. .-.. .-
T Consensus 171 ~~~~~~~~~~~~~~l~~il~~~l~~-~~~~------~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~-~~ 242 (446)
T PF10165_consen 171 PKSVPEEFSPSIPHLVSILRRLLPP-PPSS------PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN-MD 242 (446)
T ss_pred CcccchhhhHHHHHHHHHHHHHhcc-CCCC------CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC-hH
Confidence 221 1 111 1 2333444444311 1111 112346778888998884321111 00 0011 24
Q ss_pred cHHHHHHHHHHhHhhcCCC--cchHHHHHHHHHHhccCC
Q psy15592 218 LIDSLLYVVKSAIEKSNIG--NKSVENCVCILRNLSFRC 254 (294)
Q Consensus 218 ~i~~Lv~lL~~~~~~~~~~--~~~~e~a~~~L~nLs~~~ 254 (294)
.+..|+.+|+.....+... ++.....+.+|.+++...
T Consensus 243 ~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 243 VVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred HHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 5778888988776555432 257777888888877654
No 65
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.22 E-value=0.0021 Score=48.27 Aligned_cols=67 Identities=22% Similarity=0.352 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhcc-CCCHHHHHHHHHHHHHhcc-cchhhHHHHh
Q psy15592 92 VFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRK-TADAEVKELVTGVLWNLSS-CEDLKKSIID 160 (294)
Q Consensus 92 v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~nLs~-~~~~r~~i~~ 160 (294)
++....+.|.||++. ++.++..+++.|||+.++....- ..+|-+++.+..+++||.. ++++++.|.+
T Consensus 2 ~K~~lvrlianl~~~--~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYK--NKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhC--CHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 356678899999995 99999999999999999998754 4689999999999999987 5688887765
No 66
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.11 E-value=0.00087 Score=44.26 Aligned_cols=55 Identities=27% Similarity=0.142 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy15592 48 NVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNL 103 (294)
Q Consensus 48 ~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nL 103 (294)
+.+|..|+++|.+++...++.-.. .....++.|+.+|+++++.|+..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999988554333222 3345699999999999999999999999875
No 67
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.97 E-value=0.055 Score=52.37 Aligned_cols=180 Identities=20% Similarity=0.183 Sum_probs=122.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhH
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENK 113 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k 113 (294)
.+...+++++.+++.+.+.-+--++..+...+++. .+. .+..+.+=|.++++.++..|+++|.++. +++-.
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~--~~l---~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~ 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL--LIL---IINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMA 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH--HHH---HHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH--HHH---HHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchh
Confidence 67889999999999999988888888777554441 122 3667888889999999999999999998 55555
Q ss_pred HHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHH
Q psy15592 114 RAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFR 192 (294)
Q Consensus 114 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~ 192 (294)
..+ ++.+.+++.+ +++.+++.|+.++..+... ++. +..+.++.+..++.. .+..+..
T Consensus 113 ~~l-----~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~p~~----~~~~~~~~l~~lL~d------------~~~~V~~ 170 (526)
T PF01602_consen 113 EPL-----IPDVIKLLSD-PSPYVRKKAALALLKIYRKDPDL----VEDELIPKLKQLLSD------------KDPSVVS 170 (526)
T ss_dssp HHH-----HHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCHCC----HHGGHHHHHHHHTTH------------SSHHHHH
T ss_pred hHH-----HHHHHHHhcC-CchHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhhhccC------------CcchhHH
Confidence 554 5888899988 5899999999999998653 332 222256778777731 1256888
Q ss_pred hHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccC
Q psy15592 193 NTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFR 253 (294)
Q Consensus 193 ~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~ 253 (294)
+|+.++..+ ..+++... ..++.++..|..-. ...++-.+...+.+|..++..
T Consensus 171 ~a~~~l~~i-~~~~~~~~------~~~~~~~~~L~~~l--~~~~~~~q~~il~~l~~~~~~ 222 (526)
T PF01602_consen 171 AALSLLSEI-KCNDDSYK------SLIPKLIRILCQLL--SDPDPWLQIKILRLLRRYAPM 222 (526)
T ss_dssp HHHHHHHHH-HCTHHHHT------THHHHHHHHHHHHH--TCCSHHHHHHHHHHHTTSTSS
T ss_pred HHHHHHHHH-ccCcchhh------hhHHHHHHHhhhcc--cccchHHHHHHHHHHHhcccC
Confidence 999999999 32322211 22333344433221 344556777777777765543
No 68
>KOG2973|consensus
Probab=96.91 E-value=0.024 Score=50.53 Aligned_cols=152 Identities=24% Similarity=0.196 Sum_probs=104.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHH-hcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHH
Q psy15592 79 PPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK-NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKS 157 (294)
Q Consensus 79 ~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~ 157 (294)
-.+++++.+.+|.++..|..-+.+++. . ..+.... +.-.++.+.++++.. ++ .+.+..+|.|+|.....|..
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~---~-~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~l~~~ 78 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTG---R-GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEELRKK 78 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccc---c-chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHHHHHH
Confidence 468899999999999999999999985 3 2232222 456678899999874 43 66788899999999999999
Q ss_pred HHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhc----CcHHHHHHHHHHhHhhc
Q psy15592 158 IIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECE----GLIDSLLYVVKSAIEKS 233 (294)
Q Consensus 158 i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~----g~i~~Lv~lL~~~~~~~ 233 (294)
+++. ++.+++..+.+. . ..+.+-.+-.|.||+.........+...+ .++..++..+ ...+
T Consensus 79 ll~~-~~k~l~~~~~~p-~-----------~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~---~d~~ 142 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDP-Q-----------SPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAF---CDKS 142 (353)
T ss_pred HHHH-HHHHHHHHhcCc-c-----------cchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHH---hCcc
Confidence 9988 778888777421 0 12556677899999998877776665533 2233333322 2111
Q ss_pred CCCcchHHHHHHHHHHhccC
Q psy15592 234 NIGNKSVENCVCILRNLSFR 253 (294)
Q Consensus 234 ~~~~~~~e~a~~~L~nLs~~ 253 (294)
.....-.+.-..++.||+..
T Consensus 143 ~n~~a~f~ylA~vf~nls~~ 162 (353)
T KOG2973|consen 143 YNAYAEFHYLAPVFANLSQF 162 (353)
T ss_pred cccccchhHHHHHHHHHhhh
Confidence 11223456667788888744
No 69
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.81 E-value=0.019 Score=50.33 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHH
Q psy15592 49 VIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG-HESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLIN 127 (294)
Q Consensus 49 ~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~ 127 (294)
.....|..+|.-++.-+++.|..+.+..++..|+.+|. ...+.++..++.+|-.+... ++.|...+-+.+|+..++.
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld--~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLD--SPENQRDFEELNGLSTVCS 183 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHc--ChHHHHHHHHhCCHHHHHH
Confidence 34667889999999889999999999999999999994 46788999999999888874 8999999999999999999
Q ss_pred HhccC
Q psy15592 128 LLRKT 132 (294)
Q Consensus 128 lL~~~ 132 (294)
++++.
T Consensus 184 llk~~ 188 (257)
T PF08045_consen 184 LLKSK 188 (257)
T ss_pred HHccc
Confidence 99883
No 70
>KOG2023|consensus
Probab=96.74 E-value=0.04 Score=53.87 Aligned_cols=233 Identities=16% Similarity=0.137 Sum_probs=144.4
Q ss_pred chhHHHhhhccccccccc---------cccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc-CChH
Q psy15592 10 GSQEEFYSPSLNKKCRNS---------SLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL-GGIP 79 (294)
Q Consensus 10 ~~q~~al~~l~~l~~~~~---------~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~-g~i~ 79 (294)
..||-|..+|..+-++.. +.+ .-.+|.++++.+++++.+|..|...+-...-. ..+...... .-++
T Consensus 143 n~~EgA~~AL~KIcEDsa~~lds~~~~rpl--~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~--~~qal~~~iD~Fle 218 (885)
T KOG2023|consen 143 NTCEGAFGALQKICEDSAQFLDSDVLTRPL--NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII--QTQALYVHIDKFLE 218 (885)
T ss_pred cccchhHHHHHHHHhhhHHHHhhhcccCch--HHhHHHHHHHHhCCChhHHHHHHhhhhheeec--CcHHHHHHHHHHHH
Confidence 346777777776621111 111 23478999999999999999998887653321 222222222 1367
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHH
Q psy15592 80 PLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSII 159 (294)
Q Consensus 80 ~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~ 159 (294)
.|+.+-.+.+++|+...|++|.-|.- ...-|..-.=.+.++.++..-.+ .+..+...|+.....+|..+-.+..+.
T Consensus 219 ~lFalanD~~~eVRk~vC~alv~Lle---vr~dkl~phl~~IveyML~~tqd-~dE~VALEACEFwla~aeqpi~~~~L~ 294 (885)
T KOG2023|consen 219 ILFALANDEDPEVRKNVCRALVFLLE---VRPDKLVPHLDNIVEYMLQRTQD-VDENVALEACEFWLALAEQPICKEVLQ 294 (885)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHH---hcHHhcccchHHHHHHHHHHccC-cchhHHHHHHHHHHHHhcCcCcHHHHH
Confidence 78888888899999999999999884 22222222224566677666666 588899999999999999995555555
Q ss_pred h--hChHHHHHHhhccCCCCC--------------CCC--------------CCc-----------------cchhhHHH
Q psy15592 160 D--DGLQVVVNHIIIPHSGWD--------------PVS--------------AGE-----------------TCWSTIFR 192 (294)
Q Consensus 160 ~--~g~i~~L~~ll~~~s~~~--------------~~~--------------~~~-----------------~~~~~v~~ 192 (294)
. ..++|+|+.=+. ++..+ ++. .++ -.+=.+.+
T Consensus 295 p~l~kliPvLl~~M~-Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRk 373 (885)
T KOG2023|consen 295 PYLDKLIPVLLSGMV-YSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRK 373 (885)
T ss_pred HHHHHHHHHHHccCc-cccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhh
Confidence 3 466677664432 22110 000 000 00113556
Q ss_pred hHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCccccCCCC
Q psy15592 193 NTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQEVEDPNY 262 (294)
Q Consensus 193 ~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~ 262 (294)
|.+.+|--|++.- . ..+++.+..+|+.+.. ...=.++|.++-+|..++-++-+...|.+
T Consensus 374 CSAAaLDVLanvf--------~-~elL~~l~PlLk~~L~--~~~W~vrEagvLAlGAIAEGcM~g~~p~L 432 (885)
T KOG2023|consen 374 CSAAALDVLANVF--------G-DELLPILLPLLKEHLS--SEEWKVREAGVLALGAIAEGCMQGFVPHL 432 (885)
T ss_pred ccHHHHHHHHHhh--------H-HHHHHHHHHHHHHHcC--cchhhhhhhhHHHHHHHHHHHhhhcccch
Confidence 6555555555422 1 3557777777876542 23347999999999998877766666655
No 71
>KOG2734|consensus
Probab=96.66 E-value=0.074 Score=49.71 Aligned_cols=210 Identities=16% Similarity=0.084 Sum_probs=144.3
Q ss_pred ccccCCCHHHHHHhhcCCCHH------HHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHH
Q psy15592 29 LRWRDPNLTEVISFLSNPNNV------IKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE--SPDVFRNACGAL 100 (294)
Q Consensus 29 ~i~~~g~i~~Lv~lL~s~~~~------~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~aL 100 (294)
.+++.+.++.||.-+..=++. -..++..++-|+.--.+.....+++.|-+..|+.-+... -..-+..|.-.|
T Consensus 171 aLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiL 250 (536)
T KOG2734|consen 171 ALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEIL 250 (536)
T ss_pred HHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 456667778888766533332 245666777887766778888888888888888865543 234566777777
Q ss_pred HHhhcCCCChhhHHHHHhcCChHHHHHHhcc--------CCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhc
Q psy15592 101 RNLSYGRQNDENKRAIKNAGGIPLLINLLRK--------TADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIII 172 (294)
Q Consensus 101 ~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~--------~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~ 172 (294)
.-+-- ++.+++......+||..+++=+.. ....+..++..-+||.+-..+.+|+.++..-++++...++.
T Consensus 251 aillq--~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr 328 (536)
T KOG2734|consen 251 AILLQ--NSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLR 328 (536)
T ss_pred HHHhc--cCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHH
Confidence 77665 256688888899999999887632 12456788899999999999999999998666666665553
Q ss_pred cCCCCCCCCCCccchhhHHHhHhHHHHhhhccCH--HHHHHHHhhcCcHHHHHHHHHHhHhhc----CCCcchHHHHHHH
Q psy15592 173 PHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGE--YARKKLRECEGLIDSLLYVVKSAIEKS----NIGNKSVENCVCI 246 (294)
Q Consensus 173 ~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~--~~r~~~~~~~g~i~~Lv~lL~~~~~~~----~~~~~~~e~a~~~ 246 (294)
- . ......+.++|-....+.+ +++..+++ .++...+..++....... ....+.-|+.+.+
T Consensus 329 ~-K------------k~sr~SalkvLd~am~g~~gt~~C~kfVe-~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~si 394 (536)
T KOG2734|consen 329 E-K------------KVSRGSALKVLDHAMFGPEGTPNCNKFVE-ILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSI 394 (536)
T ss_pred H-H------------HHhhhhHHHHHHHHHhCCCchHHHHHHHH-HHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHH
Confidence 1 1 1123456677777766655 67888888 477888887776221111 1124678899999
Q ss_pred HHHhccCC
Q psy15592 247 LRNLSFRC 254 (294)
Q Consensus 247 L~nLs~~~ 254 (294)
|++|-..+
T Consensus 395 iaSl~~~~ 402 (536)
T KOG2734|consen 395 LASLLRNL 402 (536)
T ss_pred HHHHHHhc
Confidence 98877644
No 72
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.64 E-value=0.017 Score=41.57 Aligned_cols=71 Identities=30% Similarity=0.445 Sum_probs=56.4
Q ss_pred hHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhH
Q psy15592 78 IPPLVKLL-GHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKK 156 (294)
Q Consensus 78 i~~Lv~lL-~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~ 156 (294)
|+.|++.| +++++.++..++.+|..+- ++ ..++.|+.++++ +++.++..++.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----~~---------~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----DP---------EAIPALIELLKD-EDPMVRRAAARALGRIG------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----HH---------HHHHHHHHHHTS-SSHHHHHHHHHHHHCCH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----CH---------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhC-------
Confidence 68899988 8889999999999888553 22 348999999977 69999999999999873
Q ss_pred HHHhhChHHHHHHhhc
Q psy15592 157 SIIDDGLQVVVNHIII 172 (294)
Q Consensus 157 ~i~~~g~i~~L~~ll~ 172 (294)
+...++.+.+++.
T Consensus 60 ---~~~~~~~L~~~l~ 72 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQ 72 (88)
T ss_dssp ---HHHTHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHc
Confidence 2346677777773
No 73
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.52 E-value=0.0056 Score=40.30 Aligned_cols=55 Identities=33% Similarity=0.288 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHh
Q psy15592 90 PDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNL 148 (294)
Q Consensus 90 ~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nL 148 (294)
+.++..|+++|.+++.+ .+ ....-.....++.|+.+|+++ +..++..++++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~--~~-~~~~~~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEG--CP-ELLQPYLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTT--TH-HHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcc--cH-HHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 46899999999998862 33 333335567899999999884 779999999999875
No 74
>PTZ00429 beta-adaptin; Provisional
Probab=96.36 E-value=0.13 Score=52.21 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=52.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccc
Q psy15592 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE 152 (294)
Q Consensus 78 i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~ 152 (294)
++++.+.|.+.++-|+..|+-++..+-.. ++ ..+.+.|-++.|.++|.+ .++.+..+|+.+|..+....
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~--~p---elv~~~~~~~~L~~LL~D-~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHD--DM---QLFYQQDFKKDLVELLND-NNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhh--Cc---ccccccchHHHHHHHhcC-CCccHHHHHHHHHHHHHHhC
Confidence 34666777788888988888888887631 22 234456788899999987 59999999999999997543
No 75
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.31 E-value=0.081 Score=42.98 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=95.9
Q ss_pred HHHHHhcCChHHHHHhhCCCC------HHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCC-CHHHHHHH
Q psy15592 69 KQKTRSLGGIPPLVKLLGHES------PDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTA-DAEVKELV 141 (294)
Q Consensus 69 k~~i~~~g~i~~Lv~lL~s~~------~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~~a 141 (294)
..+++..||+..|++++.++. .+....++.++..|-. +.-......+..-|..++..+.... +..+...+
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMe---Hg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~s 80 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELME---HGIVSWDTLSDSFIKKIASYVNSSAMDASILQRS 80 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHh---cCcCchhhccHHHHHHHHHHHccccccchHHHHH
Confidence 457888999999999999876 3778889999999885 3344556667777788888887643 78899999
Q ss_pred HHHHHHhcccchhhHHHHhhCh-HHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhh-hccCHHHHHHHHh
Q psy15592 142 TGVLWNLSSCEDLKKSIIDDGL-QVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNA-SSAGEYARKKLRE 214 (294)
Q Consensus 142 ~~~L~nLs~~~~~r~~i~~~g~-i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nL-a~~~~~~r~~~~~ 214 (294)
++.|-++..+.......+...+ ++.+..++.. .+..++.++...+--| ..+++..|+.|.+
T Consensus 81 LaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~------------~~~~iq~naiaLinAL~~kA~~~~r~~i~~ 143 (160)
T PF11841_consen 81 LAILESIVLNSPKLYQLVEQEVTLESLIRHLQV------------SNQEIQTNAIALINALFLKADDSKRKEIAE 143 (160)
T ss_pred HHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHc------------CCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 9999999888776666665444 4777777731 2245888888777665 3455556666655
No 76
>PTZ00429 beta-adaptin; Provisional
Probab=96.25 E-value=0.49 Score=48.05 Aligned_cols=140 Identities=9% Similarity=0.067 Sum_probs=90.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRA 115 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~ 115 (294)
.+.+++++.+++.++|+-.--++.+.+..+++.. +. .+..+.+=+.++++.++..|+++|.++- .+..-..
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--lL---aINtl~KDl~d~Np~IRaLALRtLs~Ir----~~~i~e~ 140 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--LL---AVNTFLQDTTNSSPVVRALAVRTMMCIR----VSSVLEY 140 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--HH---HHHHHHHHcCCCCHHHHHHHHHHHHcCC----cHHHHHH
Confidence 4455566666677766666666666654333221 11 2567777778889999988888888877 3333333
Q ss_pred HHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHh
Q psy15592 116 IKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTS 195 (294)
Q Consensus 116 i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~ 195 (294)
+ ++++.+.+.+ .++-+++.|+.++..+-.... +.+.+.|.++.+..++.. .+..|+.+|.
T Consensus 141 l-----~~~lkk~L~D-~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D------------~dp~Vv~nAl 200 (746)
T PTZ00429 141 T-----LEPLRRAVAD-PDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLND------------NNPVVASNAA 200 (746)
T ss_pred H-----HHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcC------------CCccHHHHHH
Confidence 3 3667778877 589999999989988854221 223355777778877731 1234778888
Q ss_pred HHHHhhhcc
Q psy15592 196 GVLRNASSA 204 (294)
Q Consensus 196 ~~L~nLa~~ 204 (294)
.+|..+...
T Consensus 201 ~aL~eI~~~ 209 (746)
T PTZ00429 201 AIVCEVNDY 209 (746)
T ss_pred HHHHHHHHh
Confidence 877777644
No 77
>KOG1517|consensus
Probab=96.24 E-value=0.15 Score=52.38 Aligned_cols=140 Identities=12% Similarity=0.098 Sum_probs=111.0
Q ss_pred cccCCCHHHHHHhhcCCCHHHHHHHHHHHHH-hhcCCcccHHHHHhcCChHHHHHhhCC-C--CHHHHHHHHHHHHHhhc
Q psy15592 30 RWRDPNLTEVISFLSNPNNVIKANAAAYLQH-LCYMDDPNKQKTRSLGGIPPLVKLLGH-E--SPDVFRNACGALRNLSY 105 (294)
Q Consensus 30 i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~n-L~~~~~~~k~~i~~~g~i~~Lv~lL~s-~--~~~v~~~a~~aL~nLs~ 105 (294)
-..-|..|.++++|+++-.|+|-.-+.+=.. |+ -++.++..+++.+|-.-.+..|.. . +++-+..|+-.|..+..
T Consensus 508 aLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILA-vD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~ 586 (1387)
T KOG1517|consen 508 ALSVGIFPYVLKLLQSSARELRPILVFIWAKILA-VDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVR 586 (1387)
T ss_pred hhccchHHHHHHHhccchHhhhhhHHHHHHHHHh-cCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHc
Confidence 3467999999999999999988655554444 55 678999999999988888888876 2 45788888999999996
Q ss_pred CCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHh-cccchhhHHHHhhChHHHHHHhhc
Q psy15592 106 GRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNL-SSCEDLKKSIIDDGLQVVVNHIII 172 (294)
Q Consensus 106 ~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nL-s~~~~~r~~i~~~g~i~~L~~ll~ 172 (294)
+ ....+....+.+.|..-++.|.+++.+-++...+-+|.-| ...++.|=.-++.++-..|..++.
T Consensus 587 n--f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls 652 (1387)
T KOG1517|consen 587 N--FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS 652 (1387)
T ss_pred c--cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc
Confidence 4 7778888889999998888998754678888888888888 456677766677888877777774
No 78
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.24 E-value=0.065 Score=46.03 Aligned_cols=189 Identities=13% Similarity=0.070 Sum_probs=103.5
Q ss_pred cCCCHHHHHHHHHHHHHhhcCC--cccHHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhc
Q psy15592 44 SNPNNVIKANAAAYLQHLCYMD--DPNKQKTRSL--GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNA 119 (294)
Q Consensus 44 ~s~~~~~~~~a~~~L~nL~~~~--~~~k~~i~~~--g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~ 119 (294)
.+.+=+.|..|...|..+...+ ......+... ..+..++..+.+....+...|+.++..|+. .-...-.-.-.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~---~l~~~~~~~~~ 93 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLAR---QLGSHFEPYAD 93 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHH---HHGGGGHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHhHhHHHHHH
Confidence 4566678888998888887554 2333333322 345677778777778899999999999985 22222221224
Q ss_pred CChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHH
Q psy15592 120 GGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLR 199 (294)
Q Consensus 120 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~ 199 (294)
..+|.|++.+.++ ..-+++.+..+|..+...-.....+ .++.+..... . -.+.+...++.+|.
T Consensus 94 ~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~------~------Kn~~vR~~~~~~l~ 156 (228)
T PF12348_consen 94 ILLPPLLKKLGDS-KKFIREAANNALDAIIESCSYSPKI----LLEILSQGLK------S------KNPQVREECAEWLA 156 (228)
T ss_dssp HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-------------S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHh------C------CCHHHHHHHHHHHH
Confidence 5678888888774 7788889998888886644311111 1233333331 1 12457778888888
Q ss_pred hhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 200 NASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 200 nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
.+....+.....+.. .+.++.++..+.... .+.++++++.|-.+++.+..+..
T Consensus 157 ~~l~~~~~~~~~l~~-~~~~~~l~~~l~~~l--~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 157 IILEKWGSDSSVLQK-SAFLKQLVKALVKLL--SDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHTT-----GGG---HHHHHHHHHHHHHHH--TSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHccchHhhhcc-cchHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHCC
Confidence 776544312222222 233455555555554 46677999999999998865543
No 79
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.20 E-value=0.48 Score=48.31 Aligned_cols=234 Identities=12% Similarity=0.152 Sum_probs=140.2
Q ss_pred cchhHHHhhhcccccccc---------ccccccCCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCCcccHHHHHh
Q psy15592 9 TGSQEEFYSPSLNKKCRN---------SSLRWRDPNLTEVISFLSN-----PNNVIKANAAAYLQHLCYMDDPNKQKTRS 74 (294)
Q Consensus 9 ~~~q~~al~~l~~l~~~~---------~~~i~~~g~i~~Lv~lL~s-----~~~~~~~~a~~~L~nL~~~~~~~k~~i~~ 74 (294)
-...|+++.+|-+..++. ...+.+.||+..++.++.+ ...+........|..+++ -..||..+.+
T Consensus 83 geAtE~~v~~l~~~~~~~~d~e~~~~~~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~ 161 (802)
T PF13764_consen 83 GEATEEFVESLEDDSEEEEDPEQEFKIASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLE 161 (802)
T ss_pred CccchhhHhhccCccccccCHHHHHHHHHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 356778888776642211 2356779999999999975 233455566667777775 5789999999
Q ss_pred cCChHHHHHhhC----CCC----HHHHHHHHHHHHHhhcCCCChhhHHHH------HhcC-----C---hHHHHHHhccC
Q psy15592 75 LGGIPPLVKLLG----HES----PDVFRNACGALRNLSYGRQNDENKRAI------KNAG-----G---IPLLINLLRKT 132 (294)
Q Consensus 75 ~g~i~~Lv~lL~----s~~----~~v~~~a~~aL~nLs~~~~~~~~k~~i------~~~g-----~---i~~Lv~lL~~~ 132 (294)
.|+++.|++.|. .+. .++.+.-+..+..|.. +.+...+ .... . +..+++.+.+.
T Consensus 162 ~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~----ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~ 237 (802)
T PF13764_consen 162 LNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLS----EANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSP 237 (802)
T ss_pred cCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHH----HHhhhhhhhccccccccccccccHHHHHHHHHHhcCc
Confidence 999999999885 333 5666666666666653 2222111 1122 2 45555555442
Q ss_pred ---CCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhc--cCHH
Q psy15592 133 ---ADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS--AGEY 207 (294)
Q Consensus 133 ---~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~--~~~~ 207 (294)
.++.+....+.+|-+|+...+-+...+=... ...++ ....+..... .......+-+.+..++-. .+..
T Consensus 238 ~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F----~p~l~-f~~~D~~~~~--~~~~~Le~F~~i~~~I~~~~~G~~ 310 (802)
T PF13764_consen 238 FVRSNPQILQALARILPFLTYGNEEKMDALVEHF----KPYLD-FDKFDEEHSP--DEQFKLECFCEIAEGIPNNSNGNR 310 (802)
T ss_pred cccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH----HHhcC-hhhcccccCc--hHHHHHHHHHHHHhcCCCCCchHH
Confidence 3678888999999999987754443322222 22221 1122211111 111223444444444432 2356
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhHhhcC--CC--------cchHHHHHHHHHHhccCCc
Q psy15592 208 ARKKLRECEGLIDSLLYVVKSAIEKSN--IG--------NKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 208 ~r~~~~~~~g~i~~Lv~lL~~~~~~~~--~~--------~~~~e~a~~~L~nLs~~~~ 255 (294)
-|+.+.+ .|++...+.+|........ .+ ......++..|+-|+.++.
T Consensus 311 LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~ 367 (802)
T PF13764_consen 311 LKDKILE-SGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARGHE 367 (802)
T ss_pred HHHHHHH-hhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCH
Confidence 7888888 6999999999986643211 11 2344558889999888764
No 80
>KOG2734|consensus
Probab=96.19 E-value=0.45 Score=44.63 Aligned_cols=212 Identities=17% Similarity=0.099 Sum_probs=136.7
Q ss_pred ccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-----c----ccHHHHHhcCChHHHHHhhCCCCHH------HH
Q psy15592 29 LRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMD-----D----PNKQKTRSLGGIPPLVKLLGHESPD------VF 93 (294)
Q Consensus 29 ~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~-----~----~~k~~i~~~g~i~~Lv~lL~s~~~~------v~ 93 (294)
.+++..+++.|+++|.+.|.++.......+..++-.+ . ..-..+++.+.++.|++-+..=++. -.
T Consensus 120 ~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv 199 (536)
T KOG2734|consen 120 ILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGV 199 (536)
T ss_pred HHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhh
Confidence 4568899999999999999999999999999988422 1 2334456667788888877643332 34
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhcc-CCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHHHHHHhh
Q psy15592 94 RNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRK-TADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVNHII 171 (294)
Q Consensus 94 ~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~L~~ll 171 (294)
-.+...+-|+.. -.++....+++.|-+..|+.-++. +.-..-+..+..+|.-+-.+ ++++..+-...++..++.-+
T Consensus 200 ~~~L~vveNlv~--~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~l 277 (536)
T KOG2734|consen 200 HNTLAVVENLVE--VRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQL 277 (536)
T ss_pred HHHHHHHHHHHh--ccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhc
Confidence 455677888875 267778888888888887774433 33445667788888877554 45777777778887777777
Q ss_pred ccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhc
Q psy15592 172 IPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251 (294)
Q Consensus 172 ~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 251 (294)
..+..+++.+ .......++-..||+.+-... .+|..+..-+|. .|+.++...- ...+-.+...|-+..
T Consensus 278 a~yk~~dP~~---~~E~EmmeNLFdcLCs~lm~~-~nr~~Fl~~EGl--qLm~Lmlr~K------k~sr~SalkvLd~am 345 (536)
T KOG2734|consen 278 AVYKRHDPAT---VDEEEMMENLFDCLCSLLMAP-ANRERFLKGEGL--QLMNLMLREK------KVSRGSALKVLDHAM 345 (536)
T ss_pred chhhccCCCC---cCHHHHHHHHHHHHHHHhcCh-hhhhhhhccccH--HHHHHHHHHH------HHhhhhHHHHHHHHH
Confidence 6665444332 122345556666666655544 477777663443 3444443221 133445566666655
Q ss_pred cCC
Q psy15592 252 FRC 254 (294)
Q Consensus 252 ~~~ 254 (294)
++.
T Consensus 346 ~g~ 348 (536)
T KOG2734|consen 346 FGP 348 (536)
T ss_pred hCC
Confidence 554
No 81
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.07 E-value=0.017 Score=44.61 Aligned_cols=69 Identities=22% Similarity=0.285 Sum_probs=59.1
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy15592 36 LTEVISFL-SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLS 104 (294)
Q Consensus 36 i~~Lv~lL-~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs 104 (294)
+..|+++| .+.++.....|+.=|+.++...+..|..+.+.|+=..+..+|.+++++|+..|+.++.-+.
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 78999999 4567778888888899999888889988888899999999999999999999999987765
No 82
>KOG4413|consensus
Probab=96.05 E-value=0.16 Score=46.02 Aligned_cols=177 Identities=16% Similarity=0.164 Sum_probs=126.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccc----HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPN----KQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~----k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
++.|-+-|..++..++..++..+.-+..+.+.| -..++..|..+.++..+...+.++...|...+..++. .+.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial---fpa 160 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL---FPA 160 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh---cHH
Confidence 455555566788899999998887766443322 2233456778999999999999999999999999997 788
Q ss_pred hHHHHHhcCChHHH--HHHhccCCCHHHHHHHHHHHHHhcc-cchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchh
Q psy15592 112 NKRAIKNAGGIPLL--INLLRKTADAEVKELVTGVLWNLSS-CEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWS 188 (294)
Q Consensus 112 ~k~~i~~~g~i~~L--v~lL~~~~~~~~~~~a~~~L~nLs~-~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~ 188 (294)
.-..+.+....+.+ ..+-.. .+.-.+......+..+.+ .++.....-..|++.++..-+. |.. |.
T Consensus 161 aleaiFeSellDdlhlrnlaak-cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElk---Gte--------Dt 228 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAK-CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELK---GTE--------DT 228 (524)
T ss_pred HHHHhcccccCChHHHhHHHhh-hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhc---CCc--------ce
Confidence 88888887777654 333333 355667777778877755 4555556667899988887774 211 12
Q ss_pred hHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHh
Q psy15592 189 TIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSA 229 (294)
Q Consensus 189 ~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~ 229 (294)
-+.-++......|+... +.|+.+.+ +|+|+.++.++...
T Consensus 229 LVianciElvteLaete-HgreflaQ-eglIdlicnIIsGa 267 (524)
T KOG4413|consen 229 LVIANCIELVTELAETE-HGREFLAQ-EGLIDLICNIISGA 267 (524)
T ss_pred eehhhHHHHHHHHHHHh-hhhhhcch-hhHHHHHHHHhhCC
Confidence 25556667777777654 68888888 79999999998654
No 83
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.00 E-value=0.37 Score=44.92 Aligned_cols=171 Identities=16% Similarity=-0.002 Sum_probs=116.6
Q ss_pred HHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhcc-CCCHH
Q psy15592 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRK-TADAE 136 (294)
Q Consensus 58 L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~ 136 (294)
|..+-..++..|..+.-.--.+.+..++-+++.+++..+.+++|.+.. +...-..+.+.+.--.++.-|.. .....
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~---d~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLIS---DEESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc---CHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 333444455555555444444455545555569999999999999997 77778888888877777777755 33556
Q ss_pred HHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhc
Q psy15592 137 VKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECE 216 (294)
Q Consensus 137 ~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~ 216 (294)
-+++|+..++.+...++.... +..|++..++.+... .+......|..+|.-++-.++ +.+.. .
T Consensus 84 ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~------------~~D~lr~~cletL~El~l~~P---~lv~~-~ 146 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEH------------EDDRLRRICLETLCELALLNP---ELVAE-C 146 (371)
T ss_pred HHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhC------------CchHHHHHHHHHHHHHHhhCH---HHHHH-c
Confidence 678899888887665433222 355677777777631 123477888899999998776 44556 5
Q ss_pred CcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 217 GLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 217 g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
||+..|.+.+..+. .++.+..+.++.++--..
T Consensus 147 gG~~~L~~~l~d~~------~~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 147 GGIRVLLRALIDGS------FSISESLLDTLLYLLDSP 178 (371)
T ss_pred CCHHHHHHHHHhcc------HhHHHHHHHHHHHHhCCc
Confidence 88999999886432 247888888888876555
No 84
>KOG4413|consensus
Probab=95.97 E-value=0.48 Score=42.98 Aligned_cols=217 Identities=12% Similarity=0.039 Sum_probs=138.3
Q ss_pred cccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChH--HHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy15592 30 RWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIP--PLVKLLGHESPDVFRNACGALRNLSYGR 107 (294)
Q Consensus 30 i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~--~Lv~lL~s~~~~v~~~a~~aL~nLs~~~ 107 (294)
++..|.++.++..+-..|.++-..|...|..++. .+..-..+.+..-.. .+..+-..-+.-++......+-.+..
T Consensus 124 vvNaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifS-- 200 (524)
T KOG4413|consen 124 VVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFS-- 200 (524)
T ss_pred HhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHh--
Confidence 4567888888888888888888888888988885 455555665554332 22222222233344444555555543
Q ss_pred CChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCC-----
Q psy15592 108 QNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSA----- 182 (294)
Q Consensus 108 ~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~----- 182 (294)
-++......-..|.++.|..=|+...|.-+..+++.....|+...+.|+-+.++|+++++..++...+..+-+..
T Consensus 201 iSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmg 280 (524)
T KOG4413|consen 201 ISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMG 280 (524)
T ss_pred cCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHH
Confidence 166677777788988988888877667788888888889999999999999999999999988853221110000
Q ss_pred --------------------------------CccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhH
Q psy15592 183 --------------------------------GETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAI 230 (294)
Q Consensus 183 --------------------------------~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~ 230 (294)
-+..|++.++.|..++..|-+.- +..+.+... | -|..-+++.+..
T Consensus 281 fgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt-eGadlllkT-g-ppaaehllaraf 357 (524)
T KOG4413|consen 281 FGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT-EGADLLLKT-G-PPAAEHLLARAF 357 (524)
T ss_pred HHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc-chhHHHhcc-C-ChHHHHHHHHHh
Confidence 03334555666667777676554 355555552 3 345555555443
Q ss_pred hhcCCCcchHHHHHHHHHHhccCC
Q psy15592 231 EKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 231 ~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
..+.+ .-++.++.+|.+++...
T Consensus 358 dqnah--akqeaaihaLaaIagel 379 (524)
T KOG4413|consen 358 DQNAH--AKQEAAIHALAAIAGEL 379 (524)
T ss_pred ccccc--chHHHHHHHHHHhhccc
Confidence 32222 45666677777766543
No 85
>KOG4151|consensus
Probab=95.96 E-value=0.098 Score=52.06 Aligned_cols=197 Identities=14% Similarity=0.123 Sum_probs=125.7
Q ss_pred cccccCCCHHHHHHhhcCCCHHHHHHHHHHHH-HhhcCCcccHHHHHhcCChHHHHHhhCCCCHH-HHHHHHHHHHHhhc
Q psy15592 28 SLRWRDPNLTEVISFLSNPNNVIKANAAAYLQ-HLCYMDDPNKQKTRSLGGIPPLVKLLGHESPD-VFRNACGALRNLSY 105 (294)
Q Consensus 28 ~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~-nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~-v~~~a~~aL~nLs~ 105 (294)
...++.|+.+.|.++.....+..+..+..+|. .+.|.... ....++++...+..+..- -...++-+++||+.
T Consensus 498 ~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~altnLas 571 (748)
T KOG4151|consen 498 AKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEALTNLAS 571 (748)
T ss_pred CccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccC
Confidence 34568999999999998888888887777777 45543221 123455666666554432 24467889999998
Q ss_pred CCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchh-hHHHHh-hChHHHHHHhhccCCCCCCCCCC
Q psy15592 106 GRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDL-KKSIID-DGLQVVVNHIIIPHSGWDPVSAG 183 (294)
Q Consensus 106 ~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~-r~~i~~-~g~i~~L~~ll~~~s~~~~~~~~ 183 (294)
. ++..|..+.+.-+++.+-.++.. .++..+..++..+.||..++.. ...+++ .-..+++...+..
T Consensus 572 ~--s~s~r~~i~ke~~~~~ie~~~~e-e~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~---------- 638 (748)
T KOG4151|consen 572 I--SESDRQKILKEKALGKIEELMTE-ENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV---------- 638 (748)
T ss_pred c--chhhHHHHHHHhcchhhHHHhhc-ccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh----------
Confidence 4 77778888888888877777666 5899999999999999998865 445555 3344666655531
Q ss_pred ccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhc
Q psy15592 184 ETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251 (294)
Q Consensus 184 ~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 251 (294)
.+...-..+++++.-++...+.++..+.+...+...++.++. +.+++++...+....|+-
T Consensus 639 --~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~------~~~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 639 --ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQ------DEDDEIQHRGLVIILNLF 698 (748)
T ss_pred --hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhc------CchhhhhhhhhhhhhhHH
Confidence 112233345555554554444344322222344455555553 334567777776666643
No 86
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.92 E-value=0.2 Score=40.67 Aligned_cols=125 Identities=11% Similarity=0.212 Sum_probs=91.5
Q ss_pred HHHHhcCChHHHHHHhccCCC-----HHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchh
Q psy15592 114 RAIKNAGGIPLLINLLRKTAD-----AEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWS 188 (294)
Q Consensus 114 ~~i~~~g~i~~Lv~lL~~~~~-----~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~ 188 (294)
.+++..||++.|++++.++.. .+....++.++..|-.+.-.-=..++...+..+..++.. . ..+.
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~--~--------~~d~ 74 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNS--S--------AMDA 74 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHcc--c--------cccc
Confidence 567889999999999998653 466677777777776554322234555566666666631 1 1235
Q ss_pred hHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 189 TIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 189 ~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
.+...+..+|.++..+++.....+.+ +=-++.|+.+|..+ +++++.++++.+-.|-.+..
T Consensus 75 ~i~q~sLaILEs~Vl~S~~ly~~V~~-evt~~~Li~hLq~~------~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 75 SILQRSLAILESIVLNSPKLYQLVEQ-EVTLESLIRHLQVS------NQEIQTNAIALINALFLKAD 134 (160)
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHhc-cCCHHHHHHHHHcC------CHHHHHHHHHHHHHHHhcCC
Confidence 68899999999999888766777777 67788999999653 46899999999988877664
No 87
>KOG1789|consensus
Probab=95.64 E-value=0.21 Score=51.60 Aligned_cols=142 Identities=17% Similarity=0.186 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHHHHHh----cCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCC
Q psy15592 47 NNVIKANAAAYLQHLCYMDDPNKQKTRS----LGGIPPLVKLLGH-ESPDVFRNACGALRNLSYGRQNDENKRAIKNAGG 121 (294)
Q Consensus 47 ~~~~~~~a~~~L~nL~~~~~~~k~~i~~----~g~i~~Lv~lL~s-~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~ 121 (294)
+.+-..-+..+|+|+...+++....+.. .|-++.++.+|++ .++.++..|+.++..++. +.++-..+.+.|.
T Consensus 1738 s~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta---n~~Cv~~~a~~~v 1814 (2235)
T KOG1789|consen 1738 TETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA---NKECVTDLATCNV 1814 (2235)
T ss_pred hHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc---ccHHHHHHHhhhH
Confidence 3345567889999988777755444432 3667888888876 577899999999998887 8889999999999
Q ss_pred hHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhh
Q psy15592 122 IPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNA 201 (294)
Q Consensus 122 i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nL 201 (294)
+..|+.+|.+ .+..++.++-+|+.|+++++.-...++.|++.-+..++- .+.+ ......++..|..|
T Consensus 1815 L~~LL~lLHS--~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c-~~~~----------~QqRAqaAeLlaKl 1881 (2235)
T KOG1789|consen 1815 LTTLLTLLHS--QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILC-LTNS----------DQQRAQAAELLAKL 1881 (2235)
T ss_pred HHHHHHHHhc--ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHh-ccCc----------HHHHHHHHHHHHHh
Confidence 9999999966 678999999999999999988777777777655555552 1111 23556677777777
Q ss_pred hcc
Q psy15592 202 SSA 204 (294)
Q Consensus 202 a~~ 204 (294)
...
T Consensus 1882 ~Ad 1884 (2235)
T KOG1789|consen 1882 QAD 1884 (2235)
T ss_pred hhc
Confidence 654
No 88
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.63 E-value=0.15 Score=42.99 Aligned_cols=127 Identities=18% Similarity=0.218 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcccHHHHHhc----------------CChHHHHHhhCC------CCHHHHHHHHHHHHH
Q psy15592 45 NPNNVIKANAAAYLQHLCYMDDPNKQKTRSL----------------GGIPPLVKLLGH------ESPDVFRNACGALRN 102 (294)
Q Consensus 45 s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~----------------g~i~~Lv~lL~s------~~~~v~~~a~~aL~n 102 (294)
.++...-..++..|.|+++. ++....+.+. ..+..|+.++.. ....-....+..|.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRS-DSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccc-hHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 34444556778888888864 3444434322 135666666544 122345566789999
Q ss_pred hhcCCCChhhHHHHHhc--CC--hHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCC
Q psy15592 103 LSYGRQNDENKRAIKNA--GG--IPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSG 176 (294)
Q Consensus 103 Ls~~~~~~~~k~~i~~~--g~--i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~ 176 (294)
+|. .++.|..+.+. +. +..|+-++... +..-+..++++|+|++...+....++....+.+|-.+|.|..|
T Consensus 85 lS~---~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 85 LSQ---LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred hcC---CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccC
Confidence 997 89999999843 33 56666676664 7778888999999999999988988875445555555544444
No 89
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.62 E-value=0.84 Score=42.41 Aligned_cols=213 Identities=18% Similarity=0.161 Sum_probs=119.0
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHH-HHHhhcCCCChhh
Q psy15592 36 LTEVISFLSN-PNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE-SPDVFRNACGA-LRNLSYGRQNDEN 112 (294)
Q Consensus 36 i~~Lv~lL~s-~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~-~~~v~~~a~~a-L~nLs~~~~~~~~ 112 (294)
++.+++-|.+ ....+|..++--|..-+. +++.+..++.+|.+..+++.+... +..+...++.+ ++-++. +..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~---d~~~ 98 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSR---DGLN 98 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHcc---CCcc
Confidence 6667776763 345677788888888774 789999999999999999999543 33244444334 444442 2222
Q ss_pred HHHHHhcCChHHHHHHhc--cC----CC-------------------------------------HHHHHHHHHHHHHhc
Q psy15592 113 KRAIKNAGGIPLLINLLR--KT----AD-------------------------------------AEVKELVTGVLWNLS 149 (294)
Q Consensus 113 k~~i~~~g~i~~Lv~lL~--~~----~~-------------------------------------~~~~~~a~~~L~nLs 149 (294)
-..+.+.+....++++++ .. .+ ..-+..++.+|-.+.
T Consensus 99 ~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~ 178 (361)
T PF07814_consen 99 MHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLV 178 (361)
T ss_pred hhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHH
Confidence 222234444455456555 00 00 001111222322221
Q ss_pred ---------------ccchhhHHHHhhChHHHHHHhhcc----CCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHH
Q psy15592 150 ---------------SCEDLKKSIIDDGLQVVVNHIIIP----HSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARK 210 (294)
Q Consensus 150 ---------------~~~~~r~~i~~~g~i~~L~~ll~~----~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~ 210 (294)
..+..|+.+.+.|+++.++.++.. ....................+..+|.|.+..++++..
T Consensus 179 ~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~ 258 (361)
T PF07814_consen 179 RSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQS 258 (361)
T ss_pred HHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchH
Confidence 124557788888899888888752 1110111111122244567789999999877776666
Q ss_pred HHHhhc-CcHHH-HHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 211 KLRECE-GLIDS-LLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 211 ~~~~~~-g~i~~-Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
.+..+. +..+. +..++..... ........++..+.||+.++.
T Consensus 259 ~l~~~~~~~l~~~~~~l~~~~~~---~~~~~l~~~lrlllNlTn~n~ 302 (361)
T PF07814_consen 259 YLLSHRSSLLPQLLSTLLRQCDD---QVIQLLLLALRLLLNLTNNNP 302 (361)
T ss_pred HHHHhcccchHHHHHHHHHHHHH---HHHHHHHHHHHHeeeCCCCCc
Confidence 665543 33333 3333322211 112346788999999998884
No 90
>KOG1059|consensus
Probab=95.56 E-value=0.72 Score=45.82 Aligned_cols=83 Identities=23% Similarity=0.357 Sum_probs=64.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHH
Q psy15592 37 TEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAI 116 (294)
Q Consensus 37 ~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i 116 (294)
+-++-+|++.-+-+|..|..+++......+ ..++. .+|.|++-|.++++.++..|+.+++.|+. .++.|.-.+
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYP---eAlr~--~FprL~EkLeDpDp~V~SAAV~VICELAr--KnPknyL~L 219 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYP---EALRP--CFPRLVEKLEDPDPSVVSAAVSVICELAR--KNPQNYLQL 219 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhh---HhHhh--hHHHHHHhccCCCchHHHHHHHHHHHHHh--hCCcccccc
Confidence 467789999999999999999999875443 34554 38999999999999999999999999996 477765443
Q ss_pred HhcCChHHHHHHhcc
Q psy15592 117 KNAGGIPLLINLLRK 131 (294)
Q Consensus 117 ~~~g~i~~Lv~lL~~ 131 (294)
. |.++++|..
T Consensus 220 A-----P~ffklltt 229 (877)
T KOG1059|consen 220 A-----PLFYKLLVT 229 (877)
T ss_pred c-----HHHHHHHhc
Confidence 3 455555543
No 91
>KOG2023|consensus
Probab=95.24 E-value=0.24 Score=48.72 Aligned_cols=173 Identities=17% Similarity=0.212 Sum_probs=110.9
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHH-H--Hhc-CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCC
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQK-T--RSL-GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQN 109 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~-i--~~~-g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~ 109 (294)
..+|.|..+|.+++....+-|..+|..+|.++.+.-.. + +-. --||.+++..+++++.++..|.+++-....
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~---- 203 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII---- 203 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheee----
Confidence 45889999999999999999999999999533221111 0 001 147899999999999999999998876664
Q ss_pred hhhHHHHHh-cCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHh--hChHHHHHHhhccCCCCCCCCCCccc
Q psy15592 110 DENKRAIKN-AGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIID--DGLQVVVNHIIIPHSGWDPVSAGETC 186 (294)
Q Consensus 110 ~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~--~g~i~~L~~ll~~~s~~~~~~~~~~~ 186 (294)
...+.-+.. -.-++.++.+-.+ .+++++++.+.+|-.|-...- +.++- .++++.+.+... ..
T Consensus 204 ~~~qal~~~iD~Fle~lFalanD-~~~eVRk~vC~alv~Llevr~--dkl~phl~~IveyML~~tq------------d~ 268 (885)
T KOG2023|consen 204 IQTQALYVHIDKFLEILFALAND-EDPEVRKNVCRALVFLLEVRP--DKLVPHLDNIVEYMLQRTQ------------DV 268 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHhcH--HhcccchHHHHHHHHHHcc------------Cc
Confidence 112222221 2344555555555 699999999999888754321 12221 234444443331 12
Q ss_pred hhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHh
Q psy15592 187 WSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSA 229 (294)
Q Consensus 187 ~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~ 229 (294)
++.|.-.|+-...-+|..+ ..+..+..+ ++.|+..|-++
T Consensus 269 dE~VALEACEFwla~aeqp-i~~~~L~p~---l~kliPvLl~~ 307 (885)
T KOG2023|consen 269 DENVALEACEFWLALAEQP-ICKEVLQPY---LDKLIPVLLSG 307 (885)
T ss_pred chhHHHHHHHHHHHHhcCc-CcHHHHHHH---HHHHHHHHHcc
Confidence 2447677887778888776 466666654 66666666544
No 92
>KOG0212|consensus
Probab=95.04 E-value=0.26 Score=47.45 Aligned_cols=197 Identities=16% Similarity=0.181 Sum_probs=122.1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc-CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhh
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL-GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN 112 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~-g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~ 112 (294)
..++-|..+|..++++++..+-.++.+.-. .-.++...++. ..++.++.-++++++.++..|..-|..... -...
T Consensus 208 ~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~-eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~---i~g~ 283 (675)
T KOG0212|consen 208 SLLDGLFNMLSDSSDEVRTLTDTLLSEFLA-EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVK---IPGR 283 (675)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhc---CCCc
Confidence 346678889999999999766665554331 11222223233 467889999999999999999888887774 2322
Q ss_pred HHHHHhcCChHHHHHHhccCCCHHHHH---HHHHHHHHhcccchhhHHHHhhCh-HHHHHHhhccCCCCCCCCCCccchh
Q psy15592 113 KRAIKNAGGIPLLINLLRKTADAEVKE---LVTGVLWNLSSCEDLKKSIIDDGL-QVVVNHIIIPHSGWDPVSAGETCWS 188 (294)
Q Consensus 113 k~~i~~~g~i~~Lv~lL~~~~~~~~~~---~a~~~L~nLs~~~~~r~~i~~~g~-i~~L~~ll~~~s~~~~~~~~~~~~~ 188 (294)
.-...-.|.+..+..++.+.+....++ ..-+.|..+.+.+..++. ++-|- +.++.+.+.. ...
T Consensus 284 ~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~------------~~~ 350 (675)
T KOG0212|consen 284 DLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSD------------DRE 350 (675)
T ss_pred chhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhc------------chH
Confidence 233334677777777776642222333 333345555555544444 55444 4888888741 113
Q ss_pred hHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 189 TIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 189 ~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
...-++..++.-|-...+ +. .+.....+.+.|..-|. +.+++++..++..|.++|...+
T Consensus 351 ~tri~~L~Wi~~l~~~~p-~q-l~~h~~~if~tLL~tLs------d~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 351 ETRIAVLNWIILLYHKAP-GQ-LLVHNDSIFLTLLKTLS------DRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHHHHHHHHHHHhhCc-ch-hhhhccHHHHHHHHhhc------CchhHHHHHHHHHHHHHhcCcc
Confidence 345577777777754433 33 23333577777766663 4456899999999999997764
No 93
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.01 E-value=0.5 Score=44.02 Aligned_cols=202 Identities=14% Similarity=0.085 Sum_probs=124.1
Q ss_pred ccCCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC
Q psy15592 31 WRDPNLTEVISFLSN--PNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQ 108 (294)
Q Consensus 31 ~~~g~i~~Lv~lL~s--~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~ 108 (294)
.+.+.--.++.-|.. .+...|++|...++.+..... ... ....|.+..++.+..+.++..+..|..+|..++..
T Consensus 63 ~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~-- 138 (371)
T PF14664_consen 63 LKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALL-- 138 (371)
T ss_pred HHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--
Confidence 334433445555543 455678999999988763321 111 22446678999999999999999999999999973
Q ss_pred ChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchh
Q psy15592 109 NDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWS 188 (294)
Q Consensus 109 ~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~ 188 (294)
+-..+.++||+..|++.+-++ ..++.+..+.++..+-..+..|.-+...--+..+..-+ +....+...+....
T Consensus 139 ---~P~lv~~~gG~~~L~~~l~d~-~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apf---td~~~~~~~~~~~~ 211 (371)
T PF14664_consen 139 ---NPELVAECGGIRVLLRALIDG-SFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPF---TDFHYRKIKDDREL 211 (371)
T ss_pred ---CHHHHHHcCCHHHHHHHHHhc-cHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhh---hhhhccccccchHH
Confidence 345777999999999999884 55688899999999999998887665422222222222 22110000011101
Q ss_pred hHHHhHhHHHHhhhccCHHHHHHHHhhc-CcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHh
Q psy15592 189 TIFRNTSGVLRNASSAGEYARKKLRECE-GLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNL 250 (294)
Q Consensus 189 ~v~~~a~~~L~nLa~~~~~~r~~~~~~~-g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL 250 (294)
.-..++..++.-+-...+ +--.+...+ .++..|+..|. .+.+++++..+.++..+
T Consensus 212 ~~l~~s~~ai~~~LrsW~-GLl~l~~~~~~~lksLv~~L~------~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 212 ERLQASAKAISTLLRSWP-GLLYLSMNDFRGLKSLVDSLR------LPNPEIRKAILDLLFDL 267 (371)
T ss_pred HHHHHHHHHHHHHHhcCC-ceeeeecCCchHHHHHHHHHc------CCCHHHHHHHHHHHHHH
Confidence 234455555544433322 111111111 46778888884 34456888888777764
No 94
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.77 E-value=1.8 Score=38.95 Aligned_cols=201 Identities=14% Similarity=0.146 Sum_probs=122.2
Q ss_pred CCHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhh
Q psy15592 34 PNLTEVI-SFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN 112 (294)
Q Consensus 34 g~i~~Lv-~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~ 112 (294)
+.++.|+ ..++++++.+|+.|..+|+-.|.-+.+. -.+. ++.+...+..++++++..|+.++.-+..-++.+.-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~---a~~~--l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL---AKEH--LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH---HHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4455555 7788999999999999999888655422 2222 66788888778999999999999888741001110
Q ss_pred HH------HHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChH-HHHHHhhccCCCCCCCCCCcc
Q psy15592 113 KR------AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQ-VVVNHIIIPHSGWDPVSAGET 185 (294)
Q Consensus 113 k~------~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i-~~L~~ll~~~s~~~~~~~~~~ 185 (294)
.. .......+..+.+.+.+. +++++..++..++-|--...... ...++ .++.....|.+..
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~-------- 168 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTED-------- 168 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCC--------
Confidence 00 112234556777777774 88999999999988755443322 12233 3444555443221
Q ss_pred chhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcc-hHHHHHHHHHHhccCC
Q psy15592 186 CWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNK-SVENCVCILRNLSFRC 254 (294)
Q Consensus 186 ~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~-~~e~a~~~L~nLs~~~ 254 (294)
+..+..+-.-++-..+..++.++..|.+ ..++.+..+.+...+..++... -..+.+..+..++...
T Consensus 169 -~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~--~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~ 235 (298)
T PF12719_consen 169 -NQRLRQCLSVFFPVYASSSPENQERLAE--AFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPS 235 (298)
T ss_pred -cHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChh
Confidence 1246666666777778878767666654 6677777766543210011111 1345666666666544
No 95
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.70 E-value=0.54 Score=38.94 Aligned_cols=88 Identities=25% Similarity=0.369 Sum_probs=63.8
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCh-HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy15592 33 DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGI-PPLVKLLGHESPDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i-~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
...++.+...|+++++.+|..|..+|.+|... +- +.-.|-+ ..++.++.+++++++..|..++..++. ..
T Consensus 24 e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~----ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~----~~ 94 (178)
T PF12717_consen 24 EPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DM----IKVKGQLFSRILKLLVDENPEIRSLARSFFSELLK----KR 94 (178)
T ss_pred HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Cc----eeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHH----hc
Confidence 45578999999999999999999999998843 22 2222333 788889999999999999999999995 22
Q ss_pred hHHHHHhcCChHHHHHHhcc
Q psy15592 112 NKRAIKNAGGIPLLINLLRK 131 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~ 131 (294)
+...+ ...++.++.-+..
T Consensus 95 ~~~~i--~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 95 NPNII--YNNFPELISSLNN 112 (178)
T ss_pred cchHH--HHHHHHHHHHHhC
Confidence 23333 2345555555544
No 96
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.69 E-value=1.3 Score=41.97 Aligned_cols=60 Identities=18% Similarity=0.078 Sum_probs=33.9
Q ss_pred CCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy15592 34 PNLTEVISFLS-NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLS 104 (294)
Q Consensus 34 g~i~~Lv~lL~-s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs 104 (294)
.+++.++..|. .++++++..++.++. .+.++. ++..|+..|.+.++.++..++.+|.-+-
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL--AQEDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWLG 114 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 44677777774 556666655444443 222111 2566777777666667766666665443
No 97
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.56 E-value=0.36 Score=41.35 Aligned_cols=110 Identities=21% Similarity=0.231 Sum_probs=71.9
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhH
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENK 113 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k 113 (294)
..++.|++.+.++...++..|..+|..++... .....+. ++.+...+.+.++.++..++..|..+... .....
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~-~~~~~~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~--~~~~~ 166 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESC-SYSPKIL----LEILSQGLKSKNPQVREECAEWLAIILEK--WGSDS 166 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHC-CcHHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHH--ccchH
Confidence 45788888888888899999999999988543 2122221 44677788899999999999999988752 22111
Q ss_pred HHHHh----cCChHHHHHHhccCCCHHHHHHHHHHHHHhccc
Q psy15592 114 RAIKN----AGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151 (294)
Q Consensus 114 ~~i~~----~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 151 (294)
..+-. ...++.+.+++.+ .++++++.+-.+++.+...
T Consensus 167 ~~l~~~~~~~~l~~~l~~~l~D-~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 167 SVLQKSAFLKQLVKALVKLLSD-ADPEVREAARECLWALYSH 207 (228)
T ss_dssp GGG--HHHHHHHHHHHHHHHTS-S-HHHHHHHHHHHHHHHHH
T ss_pred hhhcccchHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHH
Confidence 11211 2356777888888 5999999999999998554
No 98
>KOG1241|consensus
Probab=94.49 E-value=2 Score=43.04 Aligned_cols=196 Identities=14% Similarity=0.072 Sum_probs=110.7
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCcc----------------cHHHHHh--cCChHHHHHhhCCCC----H---HHHH
Q psy15592 40 ISFLSNPNNVIKANAAAYLQHLCYMDDP----------------NKQKTRS--LGGIPPLVKLLGHES----P---DVFR 94 (294)
Q Consensus 40 v~lL~s~~~~~~~~a~~~L~nL~~~~~~----------------~k~~i~~--~g~i~~Lv~lL~s~~----~---~v~~ 94 (294)
..-++++++++..++..+=.++|-..-+ ++..-.. .+.+|.|+++|...+ . ....
T Consensus 265 l~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~k 344 (859)
T KOG1241|consen 265 LAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAK 344 (859)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHH
Confidence 3445688999998888887777732111 0111111 134577777775421 1 2444
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccc-hhhHHHHhhChHHHHHHhhcc
Q psy15592 95 NACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE-DLKKSIIDDGLQVVVNHIIIP 173 (294)
Q Consensus 95 ~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-~~r~~i~~~g~i~~L~~ll~~ 173 (294)
.|-.||.-++. -.+..|+. -.+|.+-+-+++ ++..-++.+..++..+-..+ ..+..=+-.+++|.++.++.+
T Consensus 345 AAg~CL~l~A~-----~~~D~Iv~-~Vl~Fiee~i~~-pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D 417 (859)
T KOG1241|consen 345 AAGVCLMLFAQ-----CVGDDIVP-HVLPFIEENIQN-PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD 417 (859)
T ss_pred HHHHHHHHHHH-----Hhcccchh-hhHHHHHHhcCC-cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC
Confidence 44455554442 11222322 223333334444 58888888998998887765 334433445677777777731
Q ss_pred CCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccC
Q psy15592 174 HSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFR 253 (294)
Q Consensus 174 ~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~ 253 (294)
.+ .-+..-+.|+|..++...++.+.--.. ...++..+..+. ...+++..++++++-+|+-+
T Consensus 418 ~s------------l~VkdTaAwtlgrI~d~l~e~~~n~~~----l~~~l~~l~~gL---~DePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 418 PS------------LWVKDTAAWTLGRIADFLPEAIINQEL----LQSKLSALLEGL---NDEPRVASNVCWAFISLAEA 478 (859)
T ss_pred ch------------hhhcchHHHHHHHHHhhchhhcccHhh----hhHHHHHHHHHh---hhCchHHHHHHHHHHHHHHH
Confidence 11 225567889999998776533322221 223333333332 23469999999999999977
Q ss_pred CccccCCC
Q psy15592 254 CQEVEDPN 261 (294)
Q Consensus 254 ~~~~~~~~ 261 (294)
..|+-..+
T Consensus 479 ~~eA~~s~ 486 (859)
T KOG1241|consen 479 AYEAAVSN 486 (859)
T ss_pred HHHhccCC
Confidence 75554444
No 99
>KOG0212|consensus
Probab=94.44 E-value=0.59 Score=45.13 Aligned_cols=191 Identities=14% Similarity=0.108 Sum_probs=115.4
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHH-hcCChHHHHHhhCCCCHH-HHHHH---HHHHHHhhcCCC
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTR-SLGGIPPLVKLLGHESPD-VFRNA---CGALRNLSYGRQ 108 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~-~~g~i~~Lv~lL~s~~~~-v~~~a---~~aL~nLs~~~~ 108 (294)
..++.++..+.+++++++..|..+|.....-. -+..+. -.|.+..++.++.+..+. ++..+ -+.|..+..
T Consensus 250 ~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~--g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s--- 324 (675)
T KOG0212|consen 250 DMINVLVPHLQSSEPEIQLKALTWIQEFVKIP--GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS--- 324 (675)
T ss_pred cchhhccccccCCcHHHHHHHHHHHHHHhcCC--CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh---
Confidence 45789999999999999999999998877432 233343 346677888887765553 33332 223344442
Q ss_pred ChhhHHHHHhc-CChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccch
Q psy15592 109 NDENKRAIKNA-GGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCW 187 (294)
Q Consensus 109 ~~~~k~~i~~~-g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~ 187 (294)
.+..+.. ++. ..+..|.+.+.+ ...+.+..++..+..|=....++-......+.+.+.+-+.+ . +
T Consensus 325 ~~~~~~~-id~~~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd---~---------s 390 (675)
T KOG0212|consen 325 SERLKEE-IDYGSIIEVLTKYLSD-DREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSD---R---------S 390 (675)
T ss_pred hhhhccc-cchHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcC---c---------h
Confidence 3333333 333 344667777766 58889999998888886655555544455666666666631 1 1
Q ss_pred hhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 188 STIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 188 ~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
..++..+...+.+++.+.... +.++.+.++|.--.++ .--....+.-++|.||...
T Consensus 391 d~vvl~~L~lla~i~~s~~~~--------~~~~fl~sLL~~f~e~---~~~l~~Rg~lIIRqlC~lL 446 (675)
T KOG0212|consen 391 DEVVLLALSLLASICSSSNSP--------NLRKFLLSLLEMFKED---TKLLEVRGNLIIRQLCLLL 446 (675)
T ss_pred hHHHHHHHHHHHHHhcCcccc--------cHHHHHHHHHHHHhhh---hHHHHhhhhHHHHHHHHHh
Confidence 347888999999998765421 2233333333222111 0124455666777777554
No 100
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.44 E-value=0.1 Score=40.25 Aligned_cols=69 Identities=20% Similarity=0.320 Sum_probs=56.7
Q ss_pred ChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHh
Q psy15592 77 GIPPLVKLL-GHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNL 148 (294)
Q Consensus 77 ~i~~Lv~lL-~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nL 148 (294)
.+..|+++| .+.++.+...||.=|+.+... .+..|..+-+.|+-..++++|.+ ++++++..|+.++.-+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~--~p~gr~ii~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRH--YPNGRNIIEKLGAKERVMELMNH-EDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH---GGGHHHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHH--ChhHHHHHHhcChHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 367899999 455777888899889999974 78888888899999999999988 6999999999887654
No 101
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.21 E-value=0.1 Score=29.96 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=24.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCY 63 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~ 63 (294)
+|.++++++++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999873
No 102
>KOG1789|consensus
Probab=94.17 E-value=0.64 Score=48.23 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=94.2
Q ss_pred CCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy15592 33 DPNLTEVISFLS-NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 33 ~g~i~~Lv~lL~-s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
.|..+.+.-.|+ .+++.++..|..++..++ .+.++-.-+...|.+..|+.+|.+ -|..+..++.+|+.|+. +.+
T Consensus 1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S---~~~ 1844 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSS---NGQ 1844 (2235)
T ss_pred hcccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhc---CcH
Confidence 355677777775 578889999999998888 567888899999988999888865 56778889999999998 677
Q ss_pred hHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 112 NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
...+..+.|++..+..++..+.+++.+.++...|..|..
T Consensus 1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 777777899999999999887788999999999988854
No 103
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.16 E-value=0.22 Score=42.00 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=60.8
Q ss_pred cCCCHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCCcccHHHHHhc--CC--hHHHHHhhCCCCHHHHHHHHHHHH
Q psy15592 32 RDPNLTEVISFLSN------PNNVIKANAAAYLQHLCYMDDPNKQKTRSL--GG--IPPLVKLLGHESPDVFRNACGALR 101 (294)
Q Consensus 32 ~~g~i~~Lv~lL~s------~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~--g~--i~~Lv~lL~s~~~~v~~~a~~aL~ 101 (294)
+...+..|++.+.. +..+-....+.++.|++. .++.|..+... +. +..|+..+.+.+..=+..++++|+
T Consensus 50 ~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~Ir 128 (192)
T PF04063_consen 50 SGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIR 128 (192)
T ss_pred hHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 44557788877754 233446788999999995 68899999865 34 677888888887777888999999
Q ss_pred HhhcCCCChhhHHHHH
Q psy15592 102 NLSYGRQNDENKRAIK 117 (294)
Q Consensus 102 nLs~~~~~~~~k~~i~ 117 (294)
|.++ +...-..+.
T Consensus 129 NccF---d~~~H~~LL 141 (192)
T PF04063_consen 129 NCCF---DTDSHEWLL 141 (192)
T ss_pred Hhhc---cHhHHHHhc
Confidence 9999 555545554
No 104
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.14 E-value=0.63 Score=38.55 Aligned_cols=110 Identities=23% Similarity=0.289 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCCh-HHH
Q psy15592 47 NNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGI-PLL 125 (294)
Q Consensus 47 ~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i-~~L 125 (294)
++.+|.++..+++-++...+. +++ .-++.+...|+++++.++..|+.+|..|.. .+--| -.|-+ ..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~---~d~ik----~k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLIL---EDMIK----VKGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---cCcee----ehhhhhHHH
Confidence 578899999999999865442 222 137899999999999999999999999986 22111 12333 677
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhh
Q psy15592 126 INLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHII 171 (294)
Q Consensus 126 v~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll 171 (294)
+.++.+ ++++++..|..++..++... ...++...+++.+..+-
T Consensus 69 l~~l~D-~~~~Ir~~A~~~~~e~~~~~--~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 69 LKLLVD-ENPEIRSLARSFFSELLKKR--NPNIIYNNFPELISSLN 111 (178)
T ss_pred HHHHcC-CCHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHh
Confidence 788877 59999999999999887652 11223344455555443
No 105
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.14 E-value=0.1 Score=29.96 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=24.9
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15592 78 IPPLVKLLGHESPDVFRNACGALRNLSY 105 (294)
Q Consensus 78 i~~Lv~lL~s~~~~v~~~a~~aL~nLs~ 105 (294)
+|.+++++.+++++++..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999873
No 106
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.14 E-value=0.27 Score=36.65 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=50.8
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL--GGIPPLVKLLGHESPDVFRNACGALRNL 103 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~--g~i~~Lv~lL~s~~~~v~~~a~~aL~nL 103 (294)
-.+++++..+..++..+|..|+.+|.|+++. .+..+... ..+..|.+++.+.++.|+..|. .|-+|
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~-~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSADPDENVRSAAE-LLDRL 94 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH-HHHHH
Confidence 3478889999999999999999999999953 34455433 4578888999999999887664 44443
No 107
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.11 E-value=0.5 Score=35.18 Aligned_cols=60 Identities=25% Similarity=0.296 Sum_probs=45.2
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHH--hcCChHHHHHHhccCCCHHHHHHHH
Q psy15592 77 GIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK--NAGGIPLLINLLRKTADAEVKELVT 142 (294)
Q Consensus 77 ~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~--~~g~i~~Lv~lL~~~~~~~~~~~a~ 142 (294)
.+++++..+.+.+.+++..||.+|+|++. . .+..+. =....+.|.+++.+ .++.++..+.
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k---~--~~~~~l~~f~~IF~~L~kl~~D-~d~~Vr~~a~ 89 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISK---V--ARGEILPYFNEIFDALCKLSAD-PDENVRSAAE 89 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHcC-CchhHHHHHH
Confidence 48899999999999999999999999995 2 233333 24566777778777 4777775553
No 108
>KOG1062|consensus
Probab=94.10 E-value=4.1 Score=41.15 Aligned_cols=100 Identities=20% Similarity=0.235 Sum_probs=69.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRA 115 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~ 115 (294)
+..|-+||.+++-.+|..|...|......++. .+.++ =..++++|++.+..+++.|+..++.|. ++.|-..
T Consensus 315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~---avqrH--r~tIleCL~DpD~SIkrralELs~~lv----n~~Nv~~ 385 (866)
T KOG1062|consen 315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPT---AVQRH--RSTILECLKDPDVSIKRRALELSYALV----NESNVRV 385 (866)
T ss_pred HHHHHHHhcCCccceeeeehhhHHhhhcCCcH---HHHHH--HHHHHHHhcCCcHHHHHHHHHHHHHHh----ccccHHH
Confidence 34445555555555555555555554433222 12222 147888999999999999999999999 6777777
Q ss_pred HHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 116 IKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 116 i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
++ ..|+..|.+. +++++....+-+..++.
T Consensus 386 mv-----~eLl~fL~~~-d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 386 MV-----KELLEFLESS-DEDFKADIASKIAELAE 414 (866)
T ss_pred HH-----HHHHHHHHhc-cHHHHHHHHHHHHHHHH
Confidence 76 6788999885 99999999988888875
No 109
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.08 E-value=0.3 Score=34.32 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhC
Q psy15592 93 FRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162 (294)
Q Consensus 93 ~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g 162 (294)
.+.|++++.++.. .+..-.-+.+.+.++.++++...++...++--+..+|.-+|...+.++.+.+.|
T Consensus 4 lKaaLWaighIgs---s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS---SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc---ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 4578999999997 666677777789999999999987788899999999999999998888776654
No 110
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.06 E-value=0.56 Score=44.31 Aligned_cols=59 Identities=29% Similarity=0.132 Sum_probs=45.0
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 78 i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
.+++..+|++.++.++..|+++|..+-. ...++.|...+.+ .++.++..+.++|..+..
T Consensus 149 ~~~L~~~L~d~d~~Vra~A~raLG~l~~-------------~~a~~~L~~al~d-~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 149 GPALEAALTHEDALVRAAALRALGELPR-------------RLSESTLRLYLRD-SDPEVRFAALEAGLLAGS 207 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhcc-------------ccchHHHHHHHcC-CCHHHHHHHHHHHHHcCC
Confidence 4677788888888888888888877764 2456667777777 699999999988877744
No 111
>KOG3036|consensus
Probab=93.78 E-value=4.3 Score=35.49 Aligned_cols=149 Identities=16% Similarity=0.108 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHH
Q psy15592 51 KANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGH-----ESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLL 125 (294)
Q Consensus 51 ~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s-----~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~L 125 (294)
.-+|...++-++ .+++.|..+.++..---|-..|.. +.+-++..+++++..|... ++++.-.-+...+.+|..
T Consensus 96 VcnaL~LlQcvA-SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~-dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 96 VCNALALLQCVA-SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKN-DDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred HHHHHHHHHHHh-cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhc-CcHHHHHHHHHhhhHHHH
Confidence 345555666666 678999999887643333334432 3456899999999999974 344555666789999999
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhh-------HHHHhhChH--HHHHHhhccCCCCCCCCCCccchhhHHHhHhH
Q psy15592 126 INLLRKTADAEVKELVTGVLWNLSSCEDLK-------KSIIDDGLQ--VVVNHIIIPHSGWDPVSAGETCWSTIFRNTSG 196 (294)
Q Consensus 126 v~lL~~~~~~~~~~~a~~~L~nLs~~~~~r-------~~i~~~g~i--~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~ 196 (294)
++.+..+ .+..+.-++-++.-+-.++.+- +++..-+.+ .++.++.. ..+..+.+++..
T Consensus 174 Lrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~------------~ps~RllKhviR 240 (293)
T KOG3036|consen 174 LRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVS------------MPSPRLLKHVIR 240 (293)
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhc------------CCCHHHHHHHHH
Confidence 9999885 7788888888888776665442 222222222 33333331 112458899999
Q ss_pred HHHhhhccCHHHHHHHHhh
Q psy15592 197 VLRNASSAGEYARKKLREC 215 (294)
Q Consensus 197 ~L~nLa~~~~~~r~~~~~~ 215 (294)
|.-+|+.+. ..|..+..+
T Consensus 241 cYlrLsdnp-rar~aL~~c 258 (293)
T KOG3036|consen 241 CYLRLSDNP-RARAALRSC 258 (293)
T ss_pred HHHHhcCCH-HHHHHHHhh
Confidence 999999865 688887764
No 112
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.47 E-value=0.26 Score=43.31 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=70.9
Q ss_pred ccccccccccCCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHH
Q psy15592 23 KCRNSSLRWRDPNLTEVISFLS-NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE--SPDVFRNACGA 99 (294)
Q Consensus 23 ~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~a 99 (294)
....|.......++..++++|. +..+.++..+..+|..+..+++.|...+-+.+|+..++.++++. +.+++.++...
T Consensus 122 Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EF 201 (257)
T PF08045_consen 122 HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEF 201 (257)
T ss_pred CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHH
Confidence 6778888888899999999994 56788899999998887768899999999999999999999985 56788888888
Q ss_pred HHHhhc
Q psy15592 100 LRNLSY 105 (294)
Q Consensus 100 L~nLs~ 105 (294)
|+-...
T Consensus 202 L~fyl~ 207 (257)
T PF08045_consen 202 LYFYLM 207 (257)
T ss_pred HHHHHc
Confidence 776654
No 113
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.36 E-value=2 Score=39.00 Aligned_cols=109 Identities=16% Similarity=0.158 Sum_probs=77.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcC-ChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 38 EVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLG-GIPPLVKLLGH--ESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 38 ~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g-~i~~Lv~lL~s--~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
.|-+++++-++-.+..|...+.++.+ .++.|..+-..+ .-..++++++. +...+|-+.+-++|-|++ ++...+
T Consensus 153 yLgkl~Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf---~~~~aq 228 (432)
T COG5231 153 YLGKLSQLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF---SKECAQ 228 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc---CHHHHH
Confidence 33344455556677888899999996 466665554433 34677788876 457899999999999998 676664
Q ss_pred HHH-hcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 115 AIK-NAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 115 ~i~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
-+- ...-+..|+++.+......+-+.+++++.|+..
T Consensus 229 di~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~d 265 (432)
T COG5231 229 DIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLD 265 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333 235677788888775567788888999999876
No 114
>KOG1242|consensus
Probab=93.15 E-value=1.8 Score=42.19 Aligned_cols=178 Identities=20% Similarity=0.173 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHH
Q psy15592 49 VIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINL 128 (294)
Q Consensus 49 ~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~l 128 (294)
..+..++..+..+++. ..-+........||.+.+.|-+..++++..+-.+|..+.. ..+|.... -.+|.|++.
T Consensus 269 rtK~aslellg~m~~~-ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~s---vidN~dI~---~~ip~Lld~ 341 (569)
T KOG1242|consen 269 RTKMASLELLGAMADC-APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGS---VIDNPDIQ---KIIPTLLDA 341 (569)
T ss_pred hhHHHHHHHHHHHHHh-chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHH---hhccHHHH---HHHHHHHHH
Confidence 4466777888888854 4455566666789999999999999999999999999985 45555422 256888888
Q ss_pred hccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHH
Q psy15592 129 LRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYA 208 (294)
Q Consensus 129 L~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~ 208 (294)
+.+. ...+.+ ++-.|....-.. -+++-.+.+++.++ ..+...++ ..+.+.++-+..||+.--+ .
T Consensus 342 l~dp-~~~~~e----~~~~L~~ttFV~--~V~~psLalmvpiL--~R~l~eRs------t~~kr~t~~IidNm~~Lve-D 405 (569)
T KOG1242|consen 342 LADP-SCYTPE----CLDSLGATTFVA--EVDAPSLALMVPIL--KRGLAERS------TSIKRKTAIIIDNMCKLVE-D 405 (569)
T ss_pred hcCc-ccchHH----HHHhhcceeeee--eecchhHHHHHHHH--HHHHhhcc------chhhhhHHHHHHHHHHhhc-C
Confidence 8663 322222 222232211100 01223334444444 23333333 2366889999999986432 1
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 209 RKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 209 r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
.+.+ .-.++.|..=++.... +..+++++-+..+|.-+--+.
T Consensus 406 p~~l---apfl~~Llp~lk~~~~--d~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 406 PKDL---APFLPSLLPGLKENLD--DAVPEVRAVAARALGALLERL 446 (569)
T ss_pred HHHH---hhhHHHHhhHHHHHhc--CCChhHHHHHHHHHHHHHHHH
Confidence 2233 3446777777776654 336788888888886665554
No 115
>KOG1991|consensus
Probab=91.84 E-value=3 Score=42.97 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=80.8
Q ss_pred CCCHHHHHHhhc------C--CCHHHHHHHHHHHHHhhc---CCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q psy15592 33 DPNLTEVISFLS------N--PNNVIKANAAAYLQHLCY---MDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALR 101 (294)
Q Consensus 33 ~g~i~~Lv~lL~------s--~~~~~~~~a~~~L~nL~~---~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~ 101 (294)
.|.++.++..+. . .++.-+..|..++++++. .+...+ -.++.=.++.++..++++..-++..||+.+.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 455666777665 1 244555677777777661 222223 2333334567777888988999999999999
Q ss_pred HhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHHHHHHhh
Q psy15592 102 NLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVNHII 171 (294)
Q Consensus 102 nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~L~~ll 171 (294)
..+.- +-.....+ ..+.....+.|.++.+..++..+.-+|..+-++ +...+. ++..+++.+.+++
T Consensus 488 ~~~~~--df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~-~~~hvp~~mq~lL 553 (1010)
T KOG1991|consen 488 QFSSI--DFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEK-VSAHVPPIMQELL 553 (1010)
T ss_pred HHHhc--cCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhh-HhhhhhHHHHHHH
Confidence 99931 22222222 245667777787445777887777788877554 444343 3444555555555
No 116
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.79 E-value=2.2 Score=35.19 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=72.0
Q ss_pred CCHHHHHHhhcCCCHHH-HHHHHH-HHHHhhcCCcccHHHHHhcCChHHHHHhhCC---------CCHHHHHHHHHHHHH
Q psy15592 34 PNLTEVISFLSNPNNVI-KANAAA-YLQHLCYMDDPNKQKTRSLGGIPPLVKLLGH---------ESPDVFRNACGALRN 102 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~-~~~a~~-~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s---------~~~~v~~~a~~aL~n 102 (294)
...+.+++.+.+..... ...... .|+. ....--..+.+.||+..|+.+|.. .+......+++||+.
T Consensus 66 ~~p~~~i~~L~~~~~~~~~L~~L~v~Lrt---~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka 142 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTSKILKSLRVSLRT---NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA 142 (187)
T ss_dssp HHHHHHHHHHTTT--HHHHHHHHHHHHHH---S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccHHHHHHHHHHhcc---CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence 34567788886654432 111222 2222 223334567788999999998863 345788899999999
Q ss_pred hhcCCCChhhHHHHH-hcCChHHHHHHhccCCCHHHHHHHHHHHHHhc
Q psy15592 103 LSYGRQNDENKRAIK-NAGGIPLLINLLRKTADAEVKELVTGVLWNLS 149 (294)
Q Consensus 103 Ls~~~~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs 149 (294)
+.- +..+...+. ..+++..|+..|.+ ++..++..++.+|..++
T Consensus 143 l~n---~~~G~~~v~~~~~~v~~i~~~L~s-~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 143 LMN---TKYGLEAVLSHPDSVNLIALSLDS-PNIKTRKLALEILAALC 186 (187)
T ss_dssp HTS---SHHHHHHHHCSSSHHHHHHHT--T-TSHHHHHHHHHHHHHHH
T ss_pred HHc---cHHHHHHHHcCcHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 995 566666666 58889999999977 68999999998887664
No 117
>KOG2259|consensus
Probab=91.58 E-value=0.8 Score=45.10 Aligned_cols=111 Identities=16% Similarity=0.092 Sum_probs=80.4
Q ss_pred cccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15592 26 NSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSY 105 (294)
Q Consensus 26 ~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~ 105 (294)
...-|...|+-.++|.-|...--++|..|+..++.|+...+..... .+..|+..++++...++..|..+|+-++.
T Consensus 365 ~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~ 439 (823)
T KOG2259|consen 365 EEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISV 439 (823)
T ss_pred cccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3445668888889998887777799999999999999766654433 36689999999999999999999999985
Q ss_pred CCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 106 GRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 106 ~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
+ ..++..-++.+.+.|.+ ..+++++..-..|++.-.
T Consensus 440 ---~-----l~i~eeql~~il~~L~D-~s~dvRe~l~elL~~~~~ 475 (823)
T KOG2259|consen 440 ---H-----LAIREEQLRQILESLED-RSVDVREALRELLKNARV 475 (823)
T ss_pred ---H-----heecHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCC
Confidence 2 12233445666666666 366666665555554433
No 118
>KOG2999|consensus
Probab=91.45 E-value=5 Score=38.96 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=104.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCC---HHHHHHHHHHHHHhcccchhh
Q psy15592 79 PPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTAD---AEVKELVTGVLWNLSSCEDLK 155 (294)
Q Consensus 79 ~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~---~~~~~~a~~~L~nLs~~~~~r 155 (294)
..+.+++.+++...+..|...|..++. +..-...++...++..|.+++.++.. .++....+.++..+-...-.-
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~---d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSL---DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccc---cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 577888899999988889999999997 78889999999999999999988633 344444444444442211100
Q ss_pred HHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCC
Q psy15592 156 KSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNI 235 (294)
Q Consensus 156 ~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~ 235 (294)
=..+....+..+..+.. .. ..+..+...|.+.|.++..++...++.+.+ +--+..|...+..+
T Consensus 163 W~~~~~~fV~~~a~~V~-~~---------~~~a~~~~~AL~~LE~~vl~s~~~~~~v~e-ev~i~~li~hlq~~------ 225 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVN-AK---------REDANTLLAALQMLESLVLGSDTLRQLVAE-EVPIETLIRHLQVS------ 225 (713)
T ss_pred eeecccHHHHHHHHHHh-hh---------hhcccchHHHHHHHHHHHhCChHHHHHHHh-cCcHHHHHHHHHhc------
Confidence 00111122222222221 10 112346778889999998777767888887 57778888888533
Q ss_pred CcchHHHHHHHHHHhccCCc
Q psy15592 236 GNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 236 ~~~~~e~a~~~L~nLs~~~~ 255 (294)
+..++..|.+.+-.|-.+..
T Consensus 226 n~~i~~~aial~nal~~~a~ 245 (713)
T KOG2999|consen 226 NQRIQTCAIALLNALFRKAP 245 (713)
T ss_pred chHHHHHHHHHHHHHHhhCC
Confidence 45788888888877776664
No 119
>KOG1242|consensus
Probab=91.40 E-value=6.4 Score=38.49 Aligned_cols=191 Identities=13% Similarity=0.085 Sum_probs=110.3
Q ss_pred ccCCCHHHHHHhhc---CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy15592 31 WRDPNLTEVISFLS---NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGR 107 (294)
Q Consensus 31 ~~~g~i~~Lv~lL~---s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~ 107 (294)
++.+.++.+-..+. +..+.+|..|..+...+-+.-.... +-. -+|+++.-+....=+.+..++..|+.++.
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a--VK~--llpsll~~l~~~kWrtK~aslellg~m~~-- 283 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA--VKL--LLPSLLGSLLEAKWRTKMASLELLGAMAD-- 283 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch--hhH--hhhhhHHHHHHHhhhhHHHHHHHHHHHHH--
Confidence 34444444444443 4455666666555544332111111 000 13444443333333566778888998886
Q ss_pred CChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccch
Q psy15592 108 QNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCW 187 (294)
Q Consensus 108 ~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~ 187 (294)
...-.-...-...+|.+.+.|-+ .++++++.+..+|-.+.+.-+|.+ +. -.+|.++..+.+.+.
T Consensus 284 -~ap~qLs~~lp~iiP~lsevl~D-T~~evr~a~~~~l~~~~svidN~d--I~-~~ip~Lld~l~dp~~----------- 347 (569)
T KOG1242|consen 284 -CAPKQLSLCLPDLIPVLSEVLWD-TKPEVRKAGIETLLKFGSVIDNPD--IQ-KIIPTLLDALADPSC----------- 347 (569)
T ss_pred -hchHHHHHHHhHhhHHHHHHHcc-CCHHHHHHHHHHHHHHHHhhccHH--HH-HHHHHHHHHhcCccc-----------
Confidence 44455666678899999999998 599999999999999988666655 11 234556655531110
Q ss_pred hhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 188 STIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 188 ~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
.+ ..+...|..-+.... ++ +--+..++.+++.+.. +.+..++..++.+..|+|.-.
T Consensus 348 -~~-~e~~~~L~~ttFV~~------V~-~psLalmvpiL~R~l~--eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 348 -YT-PECLDSLGATTFVAE------VD-APSLALMVPILKRGLA--ERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred -ch-HHHHHhhcceeeeee------ec-chhHHHHHHHHHHHHh--hccchhhhhHHHHHHHHHHhh
Confidence 01 112222222111111 11 3445667777877653 445578889999999999877
No 120
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=91.32 E-value=9.4 Score=38.81 Aligned_cols=101 Identities=17% Similarity=0.120 Sum_probs=70.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc-cchhhH
Q psy15592 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKK 156 (294)
Q Consensus 78 i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~r~ 156 (294)
+..+.+=++++|+.++..|.+++.-|=. ++-- ...++++.+++.+ +++.+++.|.-++..+=. +++
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~~----~el~-----~~~~~~ik~~l~d-~~ayVRk~Aalav~kly~ld~~--- 160 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLRV----KELL-----GNIIDPIKKLLTD-PHAYVRKTAALAVAKLYRLDKD--- 160 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcCh----HHHH-----HHHHHHHHHHccC-CcHHHHHHHHHHHHHHHhcCHh---
Confidence 5566667788999999888887766652 2222 2356899999988 588999999988888743 333
Q ss_pred HHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhc
Q psy15592 157 SIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS 203 (294)
Q Consensus 157 ~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~ 203 (294)
...+.|.+..+..++.. .++.+..+|+..|..+-.
T Consensus 161 l~~~~g~~~~l~~l~~D------------~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 161 LYHELGLIDILKELVAD------------SDPIVIANALASLAEIDP 195 (757)
T ss_pred hhhcccHHHHHHHHhhC------------CCchHHHHHHHHHHHhch
Confidence 33456788777777731 225688888888887754
No 121
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=91.28 E-value=2.4 Score=42.86 Aligned_cols=101 Identities=24% Similarity=0.202 Sum_probs=73.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHH
Q psy15592 37 TEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAI 116 (294)
Q Consensus 37 ~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i 116 (294)
..+.+=+.++|+.+|..|.+++..+= .+ ..+.. .++++.+++.++++.|+..|+-++..+=. -.+...
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~--~~---el~~~--~~~~ik~~l~d~~ayVRk~Aalav~kly~-----ld~~l~ 162 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLR--VK---ELLGN--IIDPIKKLLTDPHAYVRKTAALAVAKLYR-----LDKDLY 162 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcC--hH---HHHHH--HHHHHHHHccCCcHHHHHHHHHHHHHHHh-----cCHhhh
Confidence 34444456777777766666665432 11 12222 36899999999999999999999988863 235566
Q ss_pred HhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 117 KNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 117 ~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
.+.|.+..+..++.+ +++.+..+|+.+|..+-.
T Consensus 163 ~~~g~~~~l~~l~~D-~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 163 HELGLIDILKELVAD-SDPIVIANALASLAEIDP 195 (757)
T ss_pred hcccHHHHHHHHhhC-CCchHHHHHHHHHHHhch
Confidence 778889999889888 599999999999988743
No 122
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=91.18 E-value=3.4 Score=37.52 Aligned_cols=123 Identities=14% Similarity=0.086 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCChhhHHHHH-hcCChHHHHHHhccC-CCHHHHHHHHHHHHHhcccchhhHHHHh-hChHH
Q psy15592 89 SPDVFRNACGALRNLSYGRQNDENKRAIK-NAGGIPLLINLLRKT-ADAEVKELVTGVLWNLSSCEDLKKSIID-DGLQV 165 (294)
Q Consensus 89 ~~~v~~~a~~aL~nLs~~~~~~~~k~~i~-~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~nLs~~~~~r~~i~~-~g~i~ 165 (294)
++-.+.-|.++|.+|.. ..+.|..+- +...-..++++++.. .+.++|.+.+-++|-++.+++..+.|-. ...+.
T Consensus 162 ~~lTrlfav~cl~~l~~---~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~ 238 (432)
T COG5231 162 DFLTRLFAVSCLSNLEF---DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIN 238 (432)
T ss_pred HHHHHHHHHHHHhhhhh---hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 44467778899999997 666665554 556677888888762 3578999999999999999988765554 35566
Q ss_pred HHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhc-cCHHHHHHHHhhcCcHHHHHHHH
Q psy15592 166 VVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS-AGEYARKKLRECEGLIDSLLYVV 226 (294)
Q Consensus 166 ~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~-~~~~~r~~~~~~~g~i~~Lv~lL 226 (294)
.++.++.. .....|.+-+++++.|+.. .+......+.. .|-+.+-|+.|
T Consensus 239 dli~iVk~-----------~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L 288 (432)
T COG5231 239 DLIAIVKE-----------RAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVL 288 (432)
T ss_pred HHHHHHHH-----------HHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHH
Confidence 66666631 1225688899999999987 33334444444 24344445555
No 123
>KOG3036|consensus
Probab=91.06 E-value=3.6 Score=35.93 Aligned_cols=135 Identities=13% Similarity=0.057 Sum_probs=93.8
Q ss_pred ccccccccccCCCHHHHHHhhc-----CCCHHHHHHHHHHHHHhhcCCc-ccHHHHHhcCChHHHHHhhCCCCHHHHHHH
Q psy15592 23 KCRNSSLRWRDPNLTEVISFLS-----NPNNVIKANAAAYLQHLCYMDD-PNKQKTRSLGGIPPLVKLLGHESPDVFRNA 96 (294)
Q Consensus 23 ~~~~~~~i~~~g~i~~Lv~lL~-----s~~~~~~~~a~~~L~nL~~~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a 96 (294)
..+.|.....+..--.+-.+|. .+.+-+|..+..+|+.+.+.++ +.-..+...+.+|..++.+..+++.-+..|
T Consensus 109 HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA 188 (293)
T KOG3036|consen 109 HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVA 188 (293)
T ss_pred CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHH
Confidence 4455665666666556667764 3566788999999999986543 355556677999999999999999999999
Q ss_pred HHHHHHhhcCCCChhhH-------HHHHh-cCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHh
Q psy15592 97 CGALRNLSYGRQNDENK-------RAIKN-AGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIID 160 (294)
Q Consensus 97 ~~aL~nLs~~~~~~~~k-------~~i~~-~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~ 160 (294)
.-.+.-+-. ++.+- ..+.. ...+..++.-+.+.++..+.+.++.+..+|+.++..|..+..
T Consensus 189 ~fIlqKIll---dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~ 257 (293)
T KOG3036|consen 189 TFILQKILL---DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRS 257 (293)
T ss_pred HHHHHHHhh---ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 888877776 33221 11111 112233333334446889999999999999999988777654
No 124
>KOG1241|consensus
Probab=91.00 E-value=10 Score=38.21 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=81.3
Q ss_pred cCCCHHHHHHhh----cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy15592 32 RDPNLTEVISFL----SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGR 107 (294)
Q Consensus 32 ~~g~i~~Lv~lL----~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~ 107 (294)
+...++++..|+ +++|-+-++.|+.+++..-...+..+..-...+++|.++.++.+++.-++..++|+|+.++.+
T Consensus 358 ~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~- 436 (859)
T KOG1241|consen 358 GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF- 436 (859)
T ss_pred cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh-
Confidence 344455555544 578888899999998887744444555555668899999999988888999999999999953
Q ss_pred CChhhHH-HHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhc
Q psy15592 108 QNDENKR-AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS 149 (294)
Q Consensus 108 ~~~~~k~-~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs 149 (294)
.++... .......++.++.=|.+ .+.+..+++|++.+|+
T Consensus 437 -l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 437 -LPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLA 476 (859)
T ss_pred -chhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHH
Confidence 443221 22233455555555544 6788999999999997
No 125
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=90.95 E-value=10 Score=34.43 Aligned_cols=86 Identities=24% Similarity=0.330 Sum_probs=50.8
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhc------------C-CcccHHHHH----h---cCChHHHHHhhC-CCCHHH
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCY------------M-DDPNKQKTR----S---LGGIPPLVKLLG-HESPDV 92 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~------------~-~~~~k~~i~----~---~g~i~~Lv~lL~-s~~~~v 92 (294)
..++.+++++.+++..++..++..+..+-. . +...|.... . ...+++|+.++. +++..+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~d~~~~v 122 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLENDENEGV 122 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCcHhH
Confidence 456777777777766666666655443220 0 011111111 1 124578888777 477778
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccC
Q psy15592 93 FRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKT 132 (294)
Q Consensus 93 ~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~ 132 (294)
+..+.++|..+-. ..++.+++..+.+.
T Consensus 123 R~~aa~aL~~~~~-------------~~a~~~l~~~l~~~ 149 (335)
T COG1413 123 RAAAARALGKLGD-------------ERALDPLLEALQDE 149 (335)
T ss_pred HHHHHHHHHhcCc-------------hhhhHHHHHHhccc
Confidence 8888888877773 23478888888763
No 126
>KOG1061|consensus
Probab=90.58 E-value=1.4 Score=44.01 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=56.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSY 105 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~ 105 (294)
..++.+.++++++.+|..++..+.++=. .....+...|-++.|-.++.++++.+..+|+.+|..+..
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHE 189 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 4678888889999999888888777652 356678888889999999999999999999999999985
No 127
>KOG2611|consensus
Probab=90.38 E-value=4 Score=39.04 Aligned_cols=130 Identities=18% Similarity=0.211 Sum_probs=96.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCC---cccHHHHHhcCChHHHHHhhCCC-----CH--HHHHHHHHHHHHhhcCC
Q psy15592 38 EVISFLSNPNNVIKANAAAYLQHLCYMD---DPNKQKTRSLGGIPPLVKLLGHE-----SP--DVFRNACGALRNLSYGR 107 (294)
Q Consensus 38 ~Lv~lL~s~~~~~~~~a~~~L~nL~~~~---~~~k~~i~~~g~i~~Lv~lL~s~-----~~--~v~~~a~~aL~nLs~~~ 107 (294)
.+..++...+.+.|..|.-....+++.+ ..+|+.+.+.=|.+.+=++|.++ .+ -.+..+...|...+.
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-- 92 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-- 92 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC--
Confidence 3556666677777877777788888653 34677788998999999999763 22 245566667777775
Q ss_pred CChhh--HHHHHhcCChHHHHHHhccCCCHH------HHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhc
Q psy15592 108 QNDEN--KRAIKNAGGIPLLINLLRKTADAE------VKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIII 172 (294)
Q Consensus 108 ~~~~~--k~~i~~~g~i~~Lv~lL~~~~~~~------~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~ 172 (294)
.++. ...++ +.||.|.+++....+++ +.+.+-.+|..+|+.+.....++..|+++.+.++-.
T Consensus 93 -~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 93 -VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred -ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 5553 23443 68999999997754544 677788999999999999999999999988887764
No 128
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.12 E-value=1.7 Score=42.76 Aligned_cols=72 Identities=21% Similarity=0.185 Sum_probs=57.8
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc-CChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15592 33 DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL-GGIPPLVKLLGHESPDVFRNACGALRNLSY 105 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~-g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~ 105 (294)
.|.+|.|...|++.+..++.+....++.+|...++ +...++. ..---|+..|++.+.++++.|..++..++.
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe-yi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPE-YIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc-cCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 68899999999999999999999999999865554 2233332 223468899999999999999999988884
No 129
>KOG2999|consensus
Probab=89.39 E-value=12 Score=36.41 Aligned_cols=163 Identities=14% Similarity=0.111 Sum_probs=106.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCH----HHHHHHHHHHHHhhcCCCChh
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP----DVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~----~v~~~a~~aL~nLs~~~~~~~ 111 (294)
...+.+.+.+++...+..|...|..++. +......+....|+..|..+..++.. ++...+++++..|-.+ .-
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmeh---gv 160 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEH---GV 160 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh---ce
Confidence 4577888899999999889999999995 67888899999999999999998754 5666666666666531 11
Q ss_pred hHHHHHhcCChHHHHHHhcc-CCCHHHHHHHHHHHHHhcccch-hhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhh
Q psy15592 112 NKRAIKNAGGIPLLINLLRK-TADAEVKELVTGVLWNLSSCED-LKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWST 189 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~nLs~~~~-~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~ 189 (294)
.....+....+.....+.+- ..+..+...++..|-++..+++ .+..+.++--+..+...+. .++..
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq------------~~n~~ 228 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQ------------VSNQR 228 (713)
T ss_pred eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHH------------hcchH
Confidence 22222223333333333322 1355677788889999887765 5666666666666666662 12234
Q ss_pred HHHhHhHHHHhhh-ccCHHHHHHHHh
Q psy15592 190 IFRNTSGVLRNAS-SAGEYARKKLRE 214 (294)
Q Consensus 190 v~~~a~~~L~nLa-~~~~~~r~~~~~ 214 (294)
+..+|...+--|- ..++..|+.|.+
T Consensus 229 i~~~aial~nal~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 229 IQTCAIALLNALFRKAPDDKRFEMAK 254 (713)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHH
Confidence 7777766665553 334445555554
No 130
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=89.20 E-value=0.69 Score=37.58 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=57.7
Q ss_pred hhcccc-ccccccccccCCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC-CCCHH-
Q psy15592 17 SPSLNK-KCRNSSLRWRDPNLTEVISFLS--NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG-HESPD- 91 (294)
Q Consensus 17 ~~l~~l-~~~~~~~i~~~g~i~~Lv~lL~--s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~-s~~~~- 91 (294)
++++.. .+--.......|.++.+..++. +.+..++..++..|...| .+...|..|.+. +++.|-+..+ +++..
T Consensus 68 ~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ 145 (157)
T PF11701_consen 68 TALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRTFISKN-YVSWLKELYKNSKDDSE 145 (157)
T ss_dssp HHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHHCCHHH-CHHHHHHHTTTCC-HH-
T ss_pred HHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHHHHHHH-HHHHHHHHHccccchHH
Confidence 344443 2334445567888999999998 788888888888888777 566666666655 6999999996 45555
Q ss_pred HHHHHHHHHH
Q psy15592 92 VFRNACGALR 101 (294)
Q Consensus 92 v~~~a~~aL~ 101 (294)
++..|+-.|.
T Consensus 146 ir~~A~v~L~ 155 (157)
T PF11701_consen 146 IRVLAAVGLC 155 (157)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766654
No 131
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=89.11 E-value=0.62 Score=38.56 Aligned_cols=90 Identities=10% Similarity=0.047 Sum_probs=61.9
Q ss_pred hhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhh
Q psy15592 153 DLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEK 232 (294)
Q Consensus 153 ~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~ 232 (294)
+--..+++.|++..|..++........+ ...+..+...+..||+.|.... .++..+..+.+++..|+..|.+.
T Consensus 98 ~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~---~~~~~~~~~~~l~Clkal~n~~-~G~~~v~~~~~~v~~i~~~L~s~--- 170 (187)
T PF06371_consen 98 SWVQEFLELGGLEALLNVLSKLNKKKEK---SEEDIDIEHECLRCLKALMNTK-YGLEAVLSHPDSVNLIALSLDSP--- 170 (187)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTHHCT---CTTCHHHHHHHHHHHHHHTSSH-HHHHHHHCSSSHHHHHHHT--TT---
T ss_pred hHHHHhccCCCHHHHHHHHHHhhhhhhh---cchhHHHHHHHHHHHHHHHccH-HHHHHHHcCcHHHHHHHHHHCCC---
Confidence 3456677788888888777532111111 1223557788999999998876 57788887789999999998533
Q ss_pred cCCCcchHHHHHHHHHHhcc
Q psy15592 233 SNIGNKSVENCVCILRNLSF 252 (294)
Q Consensus 233 ~~~~~~~~e~a~~~L~nLs~ 252 (294)
+.+++..++-+|..+|+
T Consensus 171 ---~~~~r~~~leiL~~lc~ 187 (187)
T PF06371_consen 171 ---NIKTRKLALEILAALCL 187 (187)
T ss_dssp ---SHHHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHHHHC
Confidence 35899999999998874
No 132
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=88.83 E-value=3.6 Score=37.34 Aligned_cols=61 Identities=30% Similarity=0.434 Sum_probs=48.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 77 GIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 77 ~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
.++.+..+|.+.++.++..|+.+|..+-. + .+++.|++++....+..++..+..+|..+..
T Consensus 75 av~~l~~~l~d~~~~vr~~a~~aLg~~~~----~---------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 75 AVPLLRELLSDEDPRVRDAAADALGELGD----P---------EAVPPLVELLENDENEGVRAAAARALGKLGD 135 (335)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCC----h---------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc
Confidence 56889999999999999999887777763 2 3678888999854688899888888887744
No 133
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=88.82 E-value=15 Score=37.86 Aligned_cols=133 Identities=18% Similarity=0.178 Sum_probs=86.2
Q ss_pred HHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhcc---CCC----HHHHH
Q psy15592 72 TRSLGGIPPLVKLLGH-----ESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRK---TAD----AEVKE 139 (294)
Q Consensus 72 i~~~g~i~~Lv~lL~s-----~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~---~~~----~~~~~ 139 (294)
+.+.||+..|+.++.+ ...++....+..|+..+. ...||..+.+.|+++.|++.+.. ... ..+.+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K---v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK---VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh---hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 3457899999998875 345677777777777775 89999999999999999998853 222 56777
Q ss_pred HHHHHHHHhcccch---hhHH---HHhhC----h---HHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCH
Q psy15592 140 LVTGVLWNLSSCED---LKKS---IIDDG----L---QVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGE 206 (294)
Q Consensus 140 ~a~~~L~nLs~~~~---~r~~---i~~~g----~---i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~ 206 (294)
..+.++-.|....+ .... ....| . +.+++..+. +.. . .....+....+.+|-+|+.+++
T Consensus 190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~--s~~-~-----r~~~~i~~~l~RiLP~Lt~G~~ 261 (802)
T PF13764_consen 190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLN--SPF-V-----RSNPQILQALARILPFLTYGNE 261 (802)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhc--Ccc-c-----cCCHHHHHHHHHHhhHHhcCCH
Confidence 77767666643221 1111 11122 2 344444442 110 0 1124578888999999999887
Q ss_pred HHHHHHHhh
Q psy15592 207 YARKKLREC 215 (294)
Q Consensus 207 ~~r~~~~~~ 215 (294)
+..+.++++
T Consensus 262 e~m~~Lv~~ 270 (802)
T PF13764_consen 262 EKMDALVEH 270 (802)
T ss_pred HHHHHHHHH
Confidence 666666553
No 134
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=88.62 E-value=15 Score=32.39 Aligned_cols=148 Identities=16% Similarity=0.093 Sum_probs=97.3
Q ss_pred HHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHH
Q psy15592 52 ANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE-----SPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLI 126 (294)
Q Consensus 52 ~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~-----~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv 126 (294)
-+|...++-++ .+++.|..+.++...--|...|+.. .+.++..++++++.|... ++.+.-.-+.+.+.+|..+
T Consensus 68 cnaLaLlQ~vA-shpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~-d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 68 CNALALLQCVA-SHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKT-DDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHH-H-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT---HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHH-cChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcC-CcHHHHHHHHhhchHHHHH
Confidence 34455566677 4789999999998665555555432 245899999999999973 3555566667899999999
Q ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhh-------HHHHhh-ChH-HHHHHhhccCCCCCCCCCCccchhhHHHhHhHH
Q psy15592 127 NLLRKTADAEVKELVTGVLWNLSSCEDLK-------KSIIDD-GLQ-VVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGV 197 (294)
Q Consensus 127 ~lL~~~~~~~~~~~a~~~L~nLs~~~~~r-------~~i~~~-g~i-~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~ 197 (294)
+.|+.+ ++-.+.-|+-++..+-.++.+- +++..- .++ .++..+... ....+.++..+|
T Consensus 146 r~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~------------pS~RLLKhIIrC 212 (262)
T PF04078_consen 146 RIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQ------------PSPRLLKHIIRC 212 (262)
T ss_dssp HHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--------------HHHHHHHHHH
T ss_pred HHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccC------------CChhHHHHHHHH
Confidence 999885 7778888888887776555442 222221 122 222222211 124588999999
Q ss_pred HHhhhccCHHHHHHHHhh
Q psy15592 198 LRNASSAGEYARKKLREC 215 (294)
Q Consensus 198 L~nLa~~~~~~r~~~~~~ 215 (294)
-..|+.+. ..|.+++.+
T Consensus 213 YlRLsdnp-rar~aL~~~ 229 (262)
T PF04078_consen 213 YLRLSDNP-RAREALRQC 229 (262)
T ss_dssp HHHHTTST-THHHHHHHH
T ss_pred HHHHccCH-HHHHHHHHh
Confidence 99999877 477777764
No 135
>KOG2025|consensus
Probab=87.32 E-value=3.4 Score=41.24 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=82.2
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhh
Q psy15592 33 DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN 112 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~ 112 (294)
.|.+..+++...+++..+|.+.+..|..+.- ...-....+-.+-+..|..-+.+..+.|+..|+.+|..+-....+++
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee- 161 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE- 161 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc-
Confidence 5666777777788999999999999998883 22333334444556788888889999999999999999984111222
Q ss_pred HHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHH
Q psy15592 113 KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSII 159 (294)
Q Consensus 113 k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~ 159 (294)
..+...+..++...+++++++.++ .|++.+++...-|+
T Consensus 162 ------~~v~n~l~~liqnDpS~EVRRaaL---snI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 162 ------CPVVNLLKDLIQNDPSDEVRRAAL---SNISVDNSTLPCIV 199 (892)
T ss_pred ------ccHHHHHHHHHhcCCcHHHHHHHH---HhhccCcccchhHH
Confidence 234566777888777889998765 66666665555554
No 136
>KOG4151|consensus
Probab=87.09 E-value=2.1 Score=43.03 Aligned_cols=147 Identities=12% Similarity=0.113 Sum_probs=104.6
Q ss_pred hhcccc---ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc-CChHHHHHhhCCCCHHH
Q psy15592 17 SPSLNK---KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL-GGIPPLVKLLGHESPDV 92 (294)
Q Consensus 17 ~~l~~l---~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~-g~i~~Lv~lL~s~~~~v 92 (294)
.++.|+ ++..|..+.+.-+++.+-.++..+++-.|..++..+.||.++..-....++++ .+.+.....+....+..
T Consensus 564 ~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~ 643 (748)
T KOG4151|consen 564 EALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKF 643 (748)
T ss_pred HHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHH
Confidence 344444 55556557788888888888888999999999999999998765566677774 57888888888877788
Q ss_pred HHHHHHHHHHhhcCCCChhh-HH-HHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc-cchhhHHHHhhChHHHH
Q psy15592 93 FRNACGALRNLSYGRQNDEN-KR-AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSIIDDGLQVVV 167 (294)
Q Consensus 93 ~~~a~~aL~nLs~~~~~~~~-k~-~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~r~~i~~~g~i~~L 167 (294)
...+++++--++. ..++ +. ...-..+...++.++.+ .+.++|...+....|+.. ..+....+...-..+.+
T Consensus 644 ~lA~a~a~a~I~s---v~~n~c~~~~~~~~~~e~~~~~i~~-~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l 717 (748)
T KOG4151|consen 644 ELAGAGALAAITS---VVENHCSRILELLEWLEILVRAIQD-EDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELL 717 (748)
T ss_pred hhhccccccchhh---cchhhhhhHHHhhcchHHHHHhhcC-chhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHH
Confidence 8888887775554 3333 33 33345677788888888 589999999988888644 33555555554444443
No 137
>KOG2611|consensus
Probab=86.78 E-value=3.2 Score=39.65 Aligned_cols=104 Identities=12% Similarity=0.198 Sum_probs=78.2
Q ss_pred ccccccccccCCCHHHHHHhhcCC-------CHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC-C-----
Q psy15592 23 KCRNSSLRWRDPNLTEVISFLSNP-------NNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE-S----- 89 (294)
Q Consensus 23 ~~~~~~~i~~~g~i~~Lv~lL~s~-------~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~-~----- 89 (294)
+..+|+.++++-|.+.+=++|.+. +.-.+..+..+|.-.| ..++....-.-...||.|..++... +
T Consensus 45 ~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC-~~pElAsh~~~v~~IP~llev~~~~~d~d~e~ 123 (698)
T KOG2611|consen 45 VALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFC-RVPELASHEEMVSRIPLLLEVMSKGIDTDYED 123 (698)
T ss_pred hhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHh-CChhhccCHHHHHhhhHHHHHHHhcCCCchhh
Confidence 467888999999999999999752 3345566667777677 4566554444445699999998642 2
Q ss_pred -HHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhc
Q psy15592 90 -PDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLR 130 (294)
Q Consensus 90 -~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~ 130 (294)
..+...+-.+|+.++. .+.....++..|+++.+.++-.
T Consensus 124 ~~~m~~d~Y~cL~~Va~---~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 124 NLIMLEDCYECLYLVAT---AEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hHHHHHHHHHHHHHHhc---CCchhHHHHhcCchHHHHHHHh
Confidence 2378899999999997 6888999999999999987653
No 138
>KOG0213|consensus
Probab=86.30 E-value=5.6 Score=40.07 Aligned_cols=91 Identities=12% Similarity=0.057 Sum_probs=64.1
Q ss_pred HHhhhccccccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc-CChHHHHHhhCCCCHHH
Q psy15592 14 EFYSPSLNKKCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL-GGIPPLVKLLGHESPDV 92 (294)
Q Consensus 14 ~al~~l~~l~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~-g~i~~Lv~lL~s~~~~v 92 (294)
.|+.++.|...-.|..---.+.+|.|...|++.++.+++++...++.++...++ +...++. ..---|+++|++.+.++
T Consensus 863 gAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE-~v~aREWMRIcfeLlelLkahkK~i 941 (1172)
T KOG0213|consen 863 GAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPE-YVSAREWMRICFELLELLKAHKKEI 941 (1172)
T ss_pred HHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcc-cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554333333222357789999999999999999999999999965444 2222222 22346889999999999
Q ss_pred HHHHHHHHHHhhc
Q psy15592 93 FRNACGALRNLSY 105 (294)
Q Consensus 93 ~~~a~~aL~nLs~ 105 (294)
++.|..++..++.
T Consensus 942 RRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 942 RRAAVNTFGYIAK 954 (1172)
T ss_pred HHHHHhhhhHHHH
Confidence 9999999988884
No 139
>KOG1517|consensus
Probab=86.08 E-value=2.2 Score=44.33 Aligned_cols=125 Identities=16% Similarity=0.038 Sum_probs=98.4
Q ss_pred ccccccccccCCCHHHHHHhhcC---CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC-CHHHHHHHHH
Q psy15592 23 KCRNSSLRWRDPNLTEVISFLSN---PNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE-SPDVFRNACG 98 (294)
Q Consensus 23 ~~~~~~~i~~~g~i~~Lv~lL~s---~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~-~~~v~~~a~~ 98 (294)
+..-+..+++.+|-..++..|.. -+++=|.-|+.+|..++.+...-++...+.+-|..-+..|.++ .+-++...|-
T Consensus 543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~i 622 (1387)
T KOG1517|consen 543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCI 622 (1387)
T ss_pred CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHH
Confidence 33444445666666666667754 2457788899999999977777788888888888888899886 5668888888
Q ss_pred HHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 99 ALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 99 aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
+|..|=.. .+.+|..-++.++.+.|+.+|.+ +-++++..++-+|..+-.
T Consensus 623 cLG~LW~d--~~~Arw~G~r~~AhekL~~~LsD-~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 623 CLGRLWED--YDEARWSGRRDNAHEKLILLLSD-PVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred HHHHHhhh--cchhhhccccccHHHHHHHHhcC-ccHHHHHHHHHHHHHHhc
Confidence 88888763 77788888899999999999988 589999999999988744
No 140
>KOG1062|consensus
Probab=85.91 E-value=33 Score=35.00 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=83.7
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCCh
Q psy15592 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGI 122 (294)
Q Consensus 43 L~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i 122 (294)
|++++.-++-.|..+|++++ . +| .+++. .|-+.++|++.++-++.+|+-|+..+-. ..++.-+.++
T Consensus 116 L~s~nq~vVglAL~alg~i~-s-~E---mardl--apeVe~Ll~~~~~~irKKA~Lca~r~ir--K~P~l~e~f~----- 181 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNIC-S-PE---MARDL--APEVERLLQHRDPYIRKKAALCAVRFIR--KVPDLVEHFV----- 181 (866)
T ss_pred ccCCCeeehHHHHHHhhccC-C-HH---HhHHh--hHHHHHHHhCCCHHHHHHHHHHHHHHHH--cCchHHHHhh-----
Confidence 34667777778888888888 2 33 23332 4666778999999999999988888775 2555444443
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHH--HhhChHHHHHHhhccCCCCCCC-CCCccchhhHHHhHhHHH
Q psy15592 123 PLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSI--IDDGLQVVVNHIIIPHSGWDPV-SAGETCWSTIFRNTSGVL 198 (294)
Q Consensus 123 ~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i--~~~g~i~~L~~ll~~~s~~~~~-~~~~~~~~~v~~~a~~~L 198 (294)
+.-.++|.+ .+..+...++..+..++.. ++.-.-+ +-.+++..|..+.. ++.+++ +-...+|+-++......|
T Consensus 182 ~~~~~lL~e-k~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~--~~yspeydv~gi~dPFLQi~iLrlL 258 (866)
T KOG1062|consen 182 IAFRKLLCE-KHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTN--SGYSPEYDVHGISDPFLQIRILRLL 258 (866)
T ss_pred HHHHHHHhh-cCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc--CCCCCccCccCCCchHHHHHHHHHH
Confidence 444455555 3555555555555554432 2221111 12333333333331 121111 011234455666666666
Q ss_pred HhhhccCHHHHHHHH
Q psy15592 199 RNASSAGEYARKKLR 213 (294)
Q Consensus 199 ~nLa~~~~~~r~~~~ 213 (294)
+-|-.++++..+.|-
T Consensus 259 riLGq~d~daSd~M~ 273 (866)
T KOG1062|consen 259 RILGQNDADASDLMN 273 (866)
T ss_pred HHhcCCCccHHHHHH
Confidence 666655555544443
No 141
>KOG4464|consensus
Probab=85.80 E-value=18 Score=34.03 Aligned_cols=166 Identities=11% Similarity=0.016 Sum_probs=98.2
Q ss_pred HHHHHhhcCCC-HHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhh---C-------CCCHHHHHHHHHHHHHhhc
Q psy15592 37 TEVISFLSNPN-NVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL---G-------HESPDVFRNACGALRNLSY 105 (294)
Q Consensus 37 ~~Lv~lL~s~~-~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL---~-------s~~~~v~~~a~~aL~nLs~ 105 (294)
+.+++.|..+- ...+..+..+++.|++...... .+....-...|+.+- . ..+..+...+..+|+|+.+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~-~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLE-PLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccc-cccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 45666665554 3456677788888885432111 111000112222221 1 1345789999999999999
Q ss_pred CCCChhhHHHHHhcCChHHHHHHhccC----CCHHHHHHHHHHHHHhcc-cchhhHHHH-hhChHHHHHHhhccCCCCCC
Q psy15592 106 GRQNDENKRAIKNAGGIPLLINLLRKT----ADAEVKELVTGVLWNLSS-CEDLKKSII-DDGLQVVVNHIIIPHSGWDP 179 (294)
Q Consensus 106 ~~~~~~~k~~i~~~g~i~~Lv~lL~~~----~~~~~~~~a~~~L~nLs~-~~~~r~~i~-~~g~i~~L~~ll~~~s~~~~ 179 (294)
+ ++..+....+......+.+.+... -...++..-+..|.-+.. ..+.|.+++ +.++++++...+...-|.+.
T Consensus 127 ~--Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgids 204 (532)
T KOG4464|consen 127 H--SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDS 204 (532)
T ss_pred c--cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCC
Confidence 5 888888888888877777766431 123455555666666643 457787766 57888999988865444332
Q ss_pred CCCC--cc-chhhHHHhHhHHHHhhhccC
Q psy15592 180 VSAG--ET-CWSTIFRNTSGVLRNASSAG 205 (294)
Q Consensus 180 ~~~~--~~-~~~~v~~~a~~~L~nLa~~~ 205 (294)
.... .+ .+......+...+.|+++..
T Consensus 205 e~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 205 EINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 1100 01 22345556777888887653
No 142
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=85.68 E-value=2.4 Score=34.38 Aligned_cols=95 Identities=17% Similarity=0.082 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHhc-CChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHH
Q psy15592 49 VIKANAAAYLQHLCYMDDPNKQKTRSL-GGIPPLVKLLG--HESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLL 125 (294)
Q Consensus 49 ~~~~~a~~~L~nL~~~~~~~k~~i~~~-g~i~~Lv~lL~--s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~L 125 (294)
+-...+..++..+-...++.-..+... |.++.++.++. +++..++..++.+|..-+. ++.+...+...+++.|
T Consensus 58 d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~----d~~~r~~I~~~~~~~L 133 (157)
T PF11701_consen 58 DSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI----DKSCRTFISKNYVSWL 133 (157)
T ss_dssp CHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT----SHHHHHCCHHHCHHHH
T ss_pred hhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc----cHHHHHHHHHHHHHHH
Confidence 345566666665554445555555544 55677777887 6788888888888777664 4555555557899999
Q ss_pred HHHhccCCCHH-HHHHHHHHHHH
Q psy15592 126 INLLRKTADAE-VKELVTGVLWN 147 (294)
Q Consensus 126 v~lL~~~~~~~-~~~~a~~~L~n 147 (294)
-++.+.+.+.. ++..++-+|+-
T Consensus 134 ~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 134 KELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHccccchHHHHHHHHHHHhc
Confidence 99997655665 77777766653
No 143
>KOG1077|consensus
Probab=84.93 E-value=9.9 Score=38.12 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=72.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCChhh
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG-HESPDVFRNACGALRNLSYGRQNDEN 112 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~aL~nLs~~~~~~~~ 112 (294)
.++..|..+|++....+|..|...+..|+. .......+..+ ...++..|+ ..+..+++.|+..|+.++ +.+|
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~s-s~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mc----D~~N 401 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLAS-SEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMC----DVSN 401 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHh-ccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHh----chhh
Confidence 346677788877777788888888888874 45667777766 788889998 568899999999999999 7788
Q ss_pred HHHHHhcCChHHHHHHhccCCCHHHHHHHH
Q psy15592 113 KRAIKNAGGIPLLINLLRKTADAEVKELVT 142 (294)
Q Consensus 113 k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~ 142 (294)
...|+ ..|++-|.. .+..+++...
T Consensus 402 ak~IV-----~elLqYL~t-Ad~sireeiv 425 (938)
T KOG1077|consen 402 AKQIV-----AELLQYLET-ADYSIREEIV 425 (938)
T ss_pred HHHHH-----HHHHHHHhh-cchHHHHHHH
Confidence 88776 456666666 3666666543
No 144
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=84.64 E-value=19 Score=33.65 Aligned_cols=123 Identities=15% Similarity=0.210 Sum_probs=90.0
Q ss_pred HHHHHHhhcCC---CHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC-C---CCHHHHHHHHHHHHHhhcCCC
Q psy15592 36 LTEVISFLSNP---NNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG-H---ESPDVFRNACGALRNLSYGRQ 108 (294)
Q Consensus 36 i~~Lv~lL~s~---~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~-s---~~~~v~~~a~~aL~nLs~~~~ 108 (294)
+..|-..+++. -+.+-..|+.++....++++..-..+.+.|.++.+++.+. . ++.++...--.+|..|+.
T Consensus 108 ~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL--- 184 (379)
T PF06025_consen 108 LSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL--- 184 (379)
T ss_pred HHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc---
Confidence 34444455443 3466788899999999888888888899999999999887 4 356788777889999998
Q ss_pred ChhhHHHHHhcCChHHHHHHhccCCCH------HHHHHHHHHHHHhcc-cchhhHHHHhh
Q psy15592 109 NDENKRAIKNAGGIPLLINLLRKTADA------EVKELVTGVLWNLSS-CEDLKKSIIDD 161 (294)
Q Consensus 109 ~~~~k~~i~~~g~i~~Lv~lL~~~~~~------~~~~~a~~~L~nLs~-~~~~r~~i~~~ 161 (294)
+....+.+.+.+.++.+++++.+.... +.....-..+-.|.. .+..|..++++
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ 244 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDA 244 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 899999999999999999998663111 122223334445554 56888888764
No 145
>KOG4535|consensus
Probab=84.57 E-value=2.3 Score=40.67 Aligned_cols=179 Identities=12% Similarity=0.014 Sum_probs=94.9
Q ss_pred HHHHHHHHhhcCCcccHHH-HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC--CCChh---hHHHHHhcCChHHHH
Q psy15592 53 NAAAYLQHLCYMDDPNKQK-TRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYG--RQNDE---NKRAIKNAGGIPLLI 126 (294)
Q Consensus 53 ~a~~~L~nL~~~~~~~k~~-i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~--~~~~~---~k~~i~~~g~i~~Lv 126 (294)
.|.+++.-+..+ +..+.. +.-..+...++..|.+..-..+.++++++.|++.. ...+. ....+.. --+..++
T Consensus 410 aA~Ra~~VyVLH-p~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~ 487 (728)
T KOG4535|consen 410 AASRALGVYVLH-PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKML 487 (728)
T ss_pred HHHhhceeEEec-cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHH
Confidence 333444444433 233322 23334566677777777778999999999999730 00111 1222221 1122222
Q ss_pred HHh--ccCCCHHHHHHHHHHHHHhcccch-h---hHHHHhhChH-HHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHH
Q psy15592 127 NLL--RKTADAEVKELVTGVLWNLSSCED-L---KKSIIDDGLQ-VVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLR 199 (294)
Q Consensus 127 ~lL--~~~~~~~~~~~a~~~L~nLs~~~~-~---r~~i~~~g~i-~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~ 199 (294)
..- .+.....++.++..+|.|+...-+ . ......+|.+ ..+-.... .....|+.|+|-++.
T Consensus 488 ~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~------------~~~~kV~WNaCya~g 555 (728)
T KOG4535|consen 488 RSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLT------------EAAMKVRWNACYAMG 555 (728)
T ss_pred HHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceec------------ccccccchHHHHHHH
Confidence 221 112356788899999999875321 1 1111222332 22211111 112458899999999
Q ss_pred hhhccCHH-HHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhc
Q psy15592 200 NASSAGEY-ARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251 (294)
Q Consensus 200 nLa~~~~~-~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 251 (294)
||-.+..- ....=+. .-+++.|+.++..+. +.+++.+|.++|.--.
T Consensus 556 NLfkn~a~~lq~~~wA-~~~F~~L~~Lv~~~~-----NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 556 NLFKNPALPLQTAPWA-SQAFNALTSLVTSCK-----NFKVRIRAAAALSVPG 602 (728)
T ss_pred HhhcCccccccCCCch-HHHHHHHHHHHHHhc-----cceEeehhhhhhcCCC
Confidence 99876541 1111112 345677888876553 4689999999986533
No 146
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=84.57 E-value=2.3 Score=37.03 Aligned_cols=84 Identities=17% Similarity=0.086 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhcccchhhHHHHhhC-------hHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHH
Q psy15592 135 AEVKELVTGVLWNLSSCEDLKKSIIDDG-------LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEY 207 (294)
Q Consensus 135 ~~~~~~a~~~L~nLs~~~~~r~~i~~~g-------~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~ 207 (294)
..-+..++.+|+-|+..+.|-+-|+..+ +...|..++. ...+....+-|.-+|.||+..++.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~-----------~~e~~v~REfAvvlL~~La~~~~~ 206 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLG-----------MREDQVCREFAVVLLSNLAQGDEA 206 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhc-----------cccchhHHHHHHHHHHHHhcccHH
Confidence 4568899999999999998888776533 3344444442 122345778899999999988876
Q ss_pred HHHHHHhhcCcHHHHHHHHHHh
Q psy15592 208 ARKKLRECEGLIDSLLYVVKSA 229 (294)
Q Consensus 208 ~r~~~~~~~g~i~~Lv~lL~~~ 229 (294)
....+....+.|..|+.+++.+
T Consensus 207 ~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 207 AARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHhhchHHHHHHHHHHH
Confidence 6655655579999999999654
No 147
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=84.08 E-value=5.2 Score=35.25 Aligned_cols=135 Identities=12% Similarity=0.034 Sum_probs=93.7
Q ss_pred ccccccccccCCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhhcC-CcccHHHHHhcCChHHHHHhhCCCCHHHHHHH
Q psy15592 23 KCRNSSLRWRDPNLTEVISFLSNP-----NNVIKANAAAYLQHLCYM-DDPNKQKTRSLGGIPPLVKLLGHESPDVFRNA 96 (294)
Q Consensus 23 ~~~~~~~i~~~g~i~~Lv~lL~s~-----~~~~~~~a~~~L~nL~~~-~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a 96 (294)
+++.|....++...-.|..+|+.. .+.+|.....+++.+.+. +.+.-..+.....+|..++.+..+++-.+..|
T Consensus 80 hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvA 159 (262)
T PF04078_consen 80 HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVA 159 (262)
T ss_dssp -TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHH
T ss_pred ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHH
Confidence 566777777888877777888643 345788999999999964 34455556677889999999999998888888
Q ss_pred HHHHHHhhcCCCChhhHHHH-------H-hcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHh
Q psy15592 97 CGALRNLSYGRQNDENKRAI-------K-NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIID 160 (294)
Q Consensus 97 ~~aL~nLs~~~~~~~~k~~i-------~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~ 160 (294)
.-.+..+-. ++.+-.-+ . =...+..++.-|....++.+.+...+|-.-|+.++..|+++.+
T Consensus 160 tfIlqKIL~---dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 160 TFILQKILL---DDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHHHHHHH---SHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHHHHHHHc---chhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 888877765 33322111 1 1234445555444446889999999999999999998888764
No 148
>KOG3665|consensus
Probab=83.55 E-value=23 Score=36.00 Aligned_cols=184 Identities=15% Similarity=0.043 Sum_probs=108.2
Q ss_pred HHHHhhcCCcccHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChH--HHHHHhccCC
Q psy15592 57 YLQHLCYMDDPNKQKTRSLGGIPPLVKLLGH-ESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIP--LLINLLRKTA 133 (294)
Q Consensus 57 ~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~--~Lv~lL~~~~ 133 (294)
+|++.+..++++-..+.+.||...+.+.++. .+.+++..+.+.+.|++. ..+++.......-+. .+-.++....
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~---~~~~~~~~~~~~~~~~~~f~~~~~~w~ 570 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAE---VLELRELLMIFEFIDFSVFKVLLNKWD 570 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHH---HhhhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 7889998889999999999999999999986 567899999999999996 444433333222222 3333454533
Q ss_pred CHHHHHHHHHHHHHhcccchhhH-HHHhhChHHHHHHhhccCCCC----------CC---CCCCccchhhHHHhHhHHHH
Q psy15592 134 DAEVKELVTGVLWNLSSCEDLKK-SIIDDGLQVVVNHIIIPHSGW----------DP---VSAGETCWSTIFRNTSGVLR 199 (294)
Q Consensus 134 ~~~~~~~a~~~L~nLs~~~~~r~-~i~~~g~i~~L~~ll~~~s~~----------~~---~~~~~~~~~~v~~~a~~~L~ 199 (294)
+.+.-+.+.++|..+..+.+... .-...-+-..+.+........ .+ +-.+.......+--|++++.
T Consensus 571 ~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~ 650 (699)
T KOG3665|consen 571 SIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIK 650 (699)
T ss_pred hhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHH
Confidence 44888889999988855422110 001111112222221100000 00 00000011224456788888
Q ss_pred hhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHH
Q psy15592 200 NASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRN 249 (294)
Q Consensus 200 nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~n 249 (294)
|+....+++.+.+.+ .|+++.+...-.... ...+++.+...+-+
T Consensus 651 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 651 NVLEQNKEYCKLVRE-SNGFELIENIRVLSE-----VVDVKEEAVLVIES 694 (699)
T ss_pred HHHHcChhhhhhhHh-ccchhhhhhcchhHH-----HHHHHHHHHHHhhc
Confidence 998888778877877 688887766654321 23566665555443
No 149
>KOG2676|consensus
Probab=83.41 E-value=1.5 Score=40.21 Aligned_cols=63 Identities=21% Similarity=0.272 Sum_probs=53.5
Q ss_pred HHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHh
Q psy15592 54 AAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG--HESPDVFRNACGALRNLSYGRQNDENKRAIKN 118 (294)
Q Consensus 54 a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~--s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~ 118 (294)
..+.|.++|+.+++++..+++.||++.++.-.. +.+|-+++...-++++|... +.+|+.-+.+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~n--N~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQN--NIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhc--chhhHHHHhc
Confidence 556889999999999999999999999888554 45788999999999999974 8888877754
No 150
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=82.97 E-value=9.2 Score=37.52 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=18.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~ 90 (294)
+..++++....+..+|..|...|-.+|..+++.-..|.+ .|+++|.++++
T Consensus 61 i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaD-----vL~QlL~tdd~ 110 (556)
T PF05918_consen 61 INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVAD-----VLVQLLQTDDP 110 (556)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHH-----HHHHHTT---H
T ss_pred HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHH-----HHHHHHhcccH
Confidence 344444444444445555555555444433333333332 44455554443
No 151
>KOG1078|consensus
Probab=82.42 E-value=55 Score=33.41 Aligned_cols=217 Identities=17% Similarity=0.176 Sum_probs=114.0
Q ss_pred HHHhhhccccccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc--------cHHHHHhcC---ChHHH
Q psy15592 13 EEFYSPSLNKKCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDP--------NKQKTRSLG---GIPPL 81 (294)
Q Consensus 13 ~~al~~l~~l~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~--------~k~~i~~~g---~i~~L 81 (294)
.++..+...+...+-+.+.. .+..|--+++++...+|..|.++|..++-..+. .-..|-..+ .-.++
T Consensus 263 ~EaArai~~l~~~~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AI 340 (865)
T KOG1078|consen 263 YEAARAIVSLPNTNSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAI 340 (865)
T ss_pred HHHHHHHhhccccCHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHH
Confidence 34445556664444443422 678888889999999999999999887743321 111121111 22455
Q ss_pred HHhhCCCCHH----HHHHHHHHHHHhhcCCCChhhH-------------HHHHhcCChHHHHHHhccCCCHHHHHHHHHH
Q psy15592 82 VKLLGHESPD----VFRNACGALRNLSYGRQNDENK-------------RAIKNAGGIPLLINLLRKTADAEVKELVTGV 144 (294)
Q Consensus 82 v~lL~s~~~~----v~~~a~~aL~nLs~~~~~~~~k-------------~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~ 144 (294)
..+|+.+.+. +.........+++. +.| -..-..+.+..|..+|+.....+.+.....+
T Consensus 341 TtLLKTG~e~sv~rLm~qI~~fv~disD-----eFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~ 415 (865)
T KOG1078|consen 341 TTLLKTGTESSVDRLMKQISSFVSDISD-----EFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDA 415 (865)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhccc-----cceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHH
Confidence 5566654432 22222222222221 111 1111234556777777765566777777777
Q ss_pred HHHhcc-cchhhHHH--------HhhChH---HHHHHhhccCCCCCCCCCC------------ccchhhHHHhHhHHHHh
Q psy15592 145 LWNLSS-CEDLKKSI--------IDDGLQ---VVVNHIIIPHSGWDPVSAG------------ETCWSTIFRNTSGVLRN 200 (294)
Q Consensus 145 L~nLs~-~~~~r~~i--------~~~g~i---~~L~~ll~~~s~~~~~~~~------------~~~~~~v~~~a~~~L~n 200 (294)
+..+.. +++-|+.. -++-.. ..+.+++. ..| +++.. ......+.-.|+.+|.+
T Consensus 416 Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG-~Eg--P~a~~Pskyir~iyNRviLEn~ivRaaAv~alaK 492 (865)
T KOG1078|consen 416 IIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLG-KEG--PKAPNPSKYIRFIYNRVILENAIVRAAAVSALAK 492 (865)
T ss_pred HHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHh-ccC--CCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHH
Confidence 666654 44444432 222222 22333332 111 11100 11122344456666666
Q ss_pred hhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhc
Q psy15592 201 ASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251 (294)
Q Consensus 201 La~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 251 (294)
+...+ .+..+++..+++... .+.|+++++.|-..|.++.
T Consensus 493 fg~~~----------~~l~~sI~vllkRc~--~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 493 FGAQD----------VVLLPSILVLLKRCL--NDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HhcCC----------CCccccHHHHHHHHh--cCchHHHHHHHHHHHHHhh
Confidence 66433 355556666666665 4667899999999999988
No 152
>KOG1832|consensus
Probab=82.31 E-value=2.9 Score=42.81 Aligned_cols=129 Identities=14% Similarity=0.211 Sum_probs=91.9
Q ss_pred cccCCCHHHHHHhhcC--------CCHHHHHHHHHHHHHhhcCCcccHHHHHh--------cCChHHHHHhhCC----CC
Q psy15592 30 RWRDPNLTEVISFLSN--------PNNVIKANAAAYLQHLCYMDDPNKQKTRS--------LGGIPPLVKLLGH----ES 89 (294)
Q Consensus 30 i~~~g~i~~Lv~lL~s--------~~~~~~~~a~~~L~nL~~~~~~~k~~i~~--------~g~i~~Lv~lL~s----~~ 89 (294)
..+.+++..++++... +.-+....|..+|+.+. .-+..+.++.. +.||..++..-.- .+
T Consensus 597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t-~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D 675 (1516)
T KOG1832|consen 597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVT-SIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD 675 (1516)
T ss_pred HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeE-ecchHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence 3456777777777652 33466778888888766 45677777753 2366666654432 37
Q ss_pred HHHHHHHHHHHHHhhcCCCChhh-----------------------------------HHHHHhcCChHHHHHHhccC--
Q psy15592 90 PDVFRNACGALRNLSYGRQNDEN-----------------------------------KRAIKNAGGIPLLINLLRKT-- 132 (294)
Q Consensus 90 ~~v~~~a~~aL~nLs~~~~~~~~-----------------------------------k~~i~~~g~i~~Lv~lL~~~-- 132 (294)
++++..|+.+|-|..++ .+.+ ..++...+||..|++||.-.
T Consensus 676 pei~~~AL~vIincVc~--pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P 753 (1516)
T KOG1832|consen 676 PEIIQPALNVIINCVCP--PPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNP 753 (1516)
T ss_pred HHHHHHHHhhhheeecC--CCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence 89999999999988762 2111 24566789999999999642
Q ss_pred --CCHHHHHHHHHHHHHhcccchhhHHHHhh
Q psy15592 133 --ADAEVKELVTGVLWNLSSCEDLKKSIIDD 161 (294)
Q Consensus 133 --~~~~~~~~a~~~L~nLs~~~~~r~~i~~~ 161 (294)
....++..|+.+|--||..+..|+.+...
T Consensus 754 ~t~aD~IRalAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 754 PTTADCIRALACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred CCcHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence 24578889999999999999999887653
No 153
>KOG1991|consensus
Probab=81.87 E-value=71 Score=33.43 Aligned_cols=202 Identities=15% Similarity=0.175 Sum_probs=104.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG-HESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
+..+...++++-.-+|.+||+++...+. .+.+....-..++......|. +.+..|+..|+-||..+-.+ .+....
T Consensus 464 v~hVfP~f~s~~g~Lrarac~vl~~~~~--~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~--~~~~~e 539 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARACWVLSQFSS--IDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISN--QEQADE 539 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHHHHHHHHHh--ccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhc--chhhhh
Confidence 4455555567777789999999998883 233333333344666667777 66778999999999999873 443433
Q ss_pred HHHh--cCChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHH
Q psy15592 115 AIKN--AGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIF 191 (294)
Q Consensus 115 ~i~~--~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~ 191 (294)
.+.. -+.++.|+++.+..+...+..-.=..++..+.. ......+.+. +.....+++....+.+. .+.+=.
T Consensus 540 ~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~-La~~F~k~l~~~~~~~~------~~ddk~ 612 (1010)
T KOG1991|consen 540 KVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQN-LAETFLKVLQTSEDEDE------SDDDKA 612 (1010)
T ss_pred hHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHH-HHHHHHHHHhccCCCCc------cchHHH
Confidence 3331 245666777776643333322222223333321 1222222222 22233333321111111 111223
Q ss_pred HhHhHHHHhhhcc---CHHHHHHHHhhcCcH-HHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 192 RNTSGVLRNASSA---GEYARKKLRECEGLI-DSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 192 ~~a~~~L~nLa~~---~~~~r~~~~~~~g~i-~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
-.|.|+|+-++.- -+.....+.+.++.+ +.+-..+.+.. .+.-+.+..++.++++..
T Consensus 613 iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i------~dfyeE~~ei~~~~t~~~ 673 (1010)
T KOG1991|consen 613 IAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDI------TDFYEELLEIVSSLTFLS 673 (1010)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHhhhhhhh
Confidence 4677777766521 111222333333333 33333444333 267777788887777665
No 154
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=81.58 E-value=9.4 Score=37.56 Aligned_cols=116 Identities=18% Similarity=0.175 Sum_probs=79.3
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhh
Q psy15592 33 DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN 112 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~ 112 (294)
+|.+..+++.+.+++..+|.+++..|+-+. +...--....-.|-+..|.+-+-+..+.++..|+.+|+.+-.-..+++|
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~-d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLS-DVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 566777888888889999999988888777 3333333445555667777777778889999999999887641114444
Q ss_pred HHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHH
Q psy15592 113 KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSII 159 (294)
Q Consensus 113 k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~ 159 (294)
+. ...|+.+++..+..+++..+ |.|++.+++.+.-|+
T Consensus 169 ~~-------~n~l~~~vqnDPS~EVRr~a---llni~vdnsT~p~Il 205 (885)
T COG5218 169 RI-------VNLLKDIVQNDPSDEVRRLA---LLNISVDNSTYPCIL 205 (885)
T ss_pred HH-------HHHHHHHHhcCcHHHHHHHH---HHHeeeCCCcchhHH
Confidence 32 23566777776677777654 578877666655554
No 155
>KOG4464|consensus
Probab=80.62 E-value=15 Score=34.63 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=76.8
Q ss_pred ChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchh
Q psy15592 109 NDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWS 188 (294)
Q Consensus 109 ~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~ 188 (294)
+.+++..+. ..++++|..+.....+...+.+++-|+...+.-+-+...-..+.|..+-. .+..++ +.....+.
T Consensus 39 ~~d~r~eL~-----e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~-ls~~e~-sl~~v~d~ 111 (532)
T KOG4464|consen 39 NSDDRKELG-----ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAE-LSSNEN-SLPTVADM 111 (532)
T ss_pred chhhHHHHH-----HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHH-hccccC-CCCcccch
Confidence 444566655 56788888876677788888899989887655444443333444443332 111111 22244566
Q ss_pred hHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHh
Q psy15592 189 TIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIE 231 (294)
Q Consensus 189 ~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~ 231 (294)
.+.-.+.+||.|+-.+++..|+...+ +.....+++.+....+
T Consensus 112 ~vi~EslKCLcNlvf~Sq~~q~~~~~-~~~~~~ll~~v~~~~e 153 (532)
T KOG4464|consen 112 HVIMESLKCLCNLVFHSQRAQDLFLE-NPLTGKLLQRVLGEFE 153 (532)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHh-hhhHHHHHHHHHHHHH
Confidence 78899999999999999888888877 5777888887766554
No 156
>KOG4535|consensus
Probab=80.24 E-value=3 Score=39.85 Aligned_cols=153 Identities=16% Similarity=0.067 Sum_probs=77.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhc---CCccc-HHHHHh-cC-ChHHHHHhhC---CCCHHHHHHHHHHHHHhhcC
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCY---MDDPN-KQKTRS-LG-GIPPLVKLLG---HESPDVFRNACGALRNLSYG 106 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~---~~~~~-k~~i~~-~g-~i~~Lv~lL~---s~~~~v~~~a~~aL~nLs~~ 106 (294)
...+...|-+..-..|..+++++.|++. .+-.+ +.+-.. .| -+..++..-. -++.+++.++.++|.|++-
T Consensus 435 a~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ- 513 (728)
T KOG4535|consen 435 ANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ- 513 (728)
T ss_pred HHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH-
Confidence 3344444444556677888888877662 01111 111101 11 1233332211 1455788888888888873
Q ss_pred CCChh----hHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHh-hCh-HHHHHHhhccCCCCCCC
Q psy15592 107 RQNDE----NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIID-DGL-QVVVNHIIIPHSGWDPV 180 (294)
Q Consensus 107 ~~~~~----~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~-~g~-i~~L~~ll~~~s~~~~~ 180 (294)
.-+ ........|.+..++...--.....++.+++-++.||-.++..+-+=.. +|. .+.|..++..++.
T Consensus 514 --vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~N---- 587 (728)
T KOG4535|consen 514 --FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKN---- 587 (728)
T ss_pred --HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhcc----
Confidence 111 0111111222222222111123567899999999999888766443333 333 3777777753322
Q ss_pred CCCccchhhHHHhHhHHHHhhh
Q psy15592 181 SAGETCWSTIFRNTSGVLRNAS 202 (294)
Q Consensus 181 ~~~~~~~~~v~~~a~~~L~nLa 202 (294)
..|..+|+++|..-.
T Consensus 588 -------FKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 588 -------FKVRIRAAAALSVPG 602 (728)
T ss_pred -------ceEeehhhhhhcCCC
Confidence 346666666665443
No 157
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=80.21 E-value=19 Score=35.41 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=56.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q psy15592 38 EVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117 (294)
Q Consensus 38 ~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~ 117 (294)
.++... .++...+..|+..|.......++....- |.+++.++.+++..++..|.+.|..++.+ +++.-..+
T Consensus 27 ~il~~~-kg~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~--~~~~v~kv- 97 (556)
T PF05918_consen 27 EILDGV-KGSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKD--NPEHVSKV- 97 (556)
T ss_dssp HHHHGG-GS-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHH-
T ss_pred HHHHHc-cCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHh--HHHHHhHH-
Confidence 333333 3678899999999998887777766554 66899999999999999999999999963 44444444
Q ss_pred hcCChHHHHHHhcc
Q psy15592 118 NAGGIPLLINLLRK 131 (294)
Q Consensus 118 ~~g~i~~Lv~lL~~ 131 (294)
+..|++||..
T Consensus 98 ----aDvL~QlL~t 107 (556)
T PF05918_consen 98 ----ADVLVQLLQT 107 (556)
T ss_dssp ----HHHHHHHTT-
T ss_pred ----HHHHHHHHhc
Confidence 4788889976
No 158
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=79.97 E-value=12 Score=26.32 Aligned_cols=66 Identities=14% Similarity=0.063 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcC
Q psy15592 51 KANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGH-ESPDVFRNACGALRNLSYGRQNDENKRAIKNAG 120 (294)
Q Consensus 51 ~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g 120 (294)
.+.|.+++.+++. .+.--..+.+.+.++.++++... +...++-.|.-+|.-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~---T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS---TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC---CHHHHHHHHHcC
Confidence 4688999999994 55666667778899999998875 556788888888888886 777777776654
No 159
>KOG1061|consensus
Probab=79.91 E-value=7 Score=39.25 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=55.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 78 i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
+.+|...++++++.++..++-+..++= ..+.......|.++.|-.++.+ .++.+..+|+.+|..+..
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~-----~~~~~~~~~~gl~~~L~~ll~D-~~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLF-----DIDPDLVEDSGLVDALKDLLSD-SNPMVVANALAALSEIHE 189 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhh-----cCChhhccccchhHHHHHHhcC-CCchHHHHHHHHHHHHHH
Confidence 468888999999999988776666554 3456777889999999999987 589999999999999965
No 160
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=79.05 E-value=58 Score=32.24 Aligned_cols=28 Identities=21% Similarity=0.390 Sum_probs=22.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCY 63 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~ 63 (294)
+..|--+|+++....|..|.++|..++-
T Consensus 305 vs~L~~fL~s~rv~~rFsA~Riln~lam 332 (898)
T COG5240 305 VSSLRTFLKSTRVVLRFSAMRILNQLAM 332 (898)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 5556667788988999999999988874
No 161
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=79.03 E-value=4.5 Score=35.59 Aligned_cols=130 Identities=21% Similarity=0.131 Sum_probs=81.3
Q ss_pred HHHHHHhhc----CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcC--ChHHHHHhhCCC----CHHHHHHHHHHHHHhhc
Q psy15592 36 LTEVISFLS----NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLG--GIPPLVKLLGHE----SPDVFRNACGALRNLSY 105 (294)
Q Consensus 36 i~~Lv~lL~----s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g--~i~~Lv~lL~s~----~~~v~~~a~~aL~nLs~ 105 (294)
...+..++. +..+..+..+.+++.|+- .+...+..+.... .+...+..+... +..++..++..+.|++.
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv 186 (268)
T PF08324_consen 108 ADLLSTLISSGSSSSPPANQMLALRLLANLF-SHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSV 186 (268)
T ss_dssp HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHT-TSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHhh-CCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHH
Confidence 344444443 346778889999999977 5677888887763 354555544444 78899999999999985
Q ss_pred CCCChhhH-HHHHhcCChHHHHHHh-ccCCCHHHHHHHHHHHHHhcccchhhHHHHh-hChHHHHH
Q psy15592 106 GRQNDENK-RAIKNAGGIPLLINLL-RKTADAEVKELVTGVLWNLSSCEDLKKSIID-DGLQVVVN 168 (294)
Q Consensus 106 ~~~~~~~k-~~i~~~g~i~~Lv~lL-~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~-~g~i~~L~ 168 (294)
. ....+ ..=.+...+..+++.+ ....+++....++.+|++|...+........ .|+...+.
T Consensus 187 ~--~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~ 250 (268)
T PF08324_consen 187 L--LHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLS 250 (268)
T ss_dssp H--HHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHH
T ss_pred H--HHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHH
Confidence 1 11111 0000111244555533 2335899999999999999876655555544 34544443
No 162
>KOG0213|consensus
Probab=77.57 E-value=3.9 Score=41.15 Aligned_cols=105 Identities=11% Similarity=0.151 Sum_probs=67.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh---hHHH
Q psy15592 39 VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDE---NKRA 115 (294)
Q Consensus 39 Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~---~k~~ 115 (294)
|-+.|....+++.-....+|..+.-...-.+..---.+.+|.|..+|++.++.++.++...+..++.. .++ .|+.
T Consensus 846 LyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr--gpE~v~aREW 923 (1172)
T KOG0213|consen 846 LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR--GPEYVSAREW 923 (1172)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc--CcccCCHHHH
Confidence 33445556667665555555444421111111111235689999999999999999999999999852 333 2444
Q ss_pred HHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhc
Q psy15592 116 IKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS 149 (294)
Q Consensus 116 i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs 149 (294)
+. .-=.|+++|+. ...++++++..++..+|
T Consensus 924 MR---IcfeLlelLka-hkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 924 MR---ICFELLELLKA-HKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred HH---HHHHHHHHHHH-HHHHHHHHHHhhhhHHH
Confidence 43 33467778877 57788888888777765
No 163
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=77.50 E-value=45 Score=31.48 Aligned_cols=111 Identities=21% Similarity=0.146 Sum_probs=73.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccc-------------HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPN-------------KQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~-------------k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~n 102 (294)
+..|+++|.+ +++...++..+.-+....++. |.++.. -.+|.|++..+..+.+.+.....+|.+
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 5677777766 667778888887766431222 222221 246788887777777788888888888
Q ss_pred hhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccc
Q psy15592 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE 152 (294)
Q Consensus 103 Ls~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~ 152 (294)
+..+ .+..-..--=...+|.|++-|.- ++.+++..++.+|..+....
T Consensus 350 ll~~--vP~~vl~~~l~~LlPLLlqsL~~-~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 350 LLKN--VPKSVLLPELPTLLPLLLQSLSL-PDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHhh--CCHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHcC
Confidence 8863 44221111113567888888866 58889999999998887655
No 164
>KOG1060|consensus
Probab=77.42 E-value=91 Score=32.04 Aligned_cols=40 Identities=25% Similarity=0.265 Sum_probs=28.2
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCC
Q psy15592 41 SFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGH 87 (294)
Q Consensus 41 ~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s 87 (294)
.+|.|.++.+...+|.+.+.++-. ++.. ..+++|+.+|.+
T Consensus 294 pLl~S~n~sVVmA~aql~y~lAP~---~~~~----~i~kaLvrLLrs 333 (968)
T KOG1060|consen 294 PLLQSRNPSVVMAVAQLFYHLAPK---NQVT----KIAKALVRLLRS 333 (968)
T ss_pred HHHhcCCcHHHHHHHhHHHhhCCH---HHHH----HHHHHHHHHHhc
Confidence 345678899999999999999832 2211 226788888865
No 165
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=76.93 E-value=13 Score=29.61 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=58.9
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 76 GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 76 g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
.++.+|.+-|+++++.++..|+..|-.+... ....-...+...+-+..|++++....++.++..++.++..-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkN-CG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKN-CGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-CCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 3567888888999999999999988888852 1344567778888899999999766688899888888877653
No 166
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=76.64 E-value=13 Score=29.62 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=58.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 77 GIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 77 ~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
++.+|.+-|.+.++.++..|+.+|-.+... ....-..++.....+..|++++....+..++..++..+...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkN-CG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAEN-CGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-CCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 466788888899999999999999888852 2344567788888899999999875688999998888877654
No 167
>KOG1059|consensus
Probab=76.13 E-value=94 Score=31.59 Aligned_cols=73 Identities=10% Similarity=0.122 Sum_probs=52.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRA 115 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~ 115 (294)
+..|-.++.+.|+.++.-++-++..+..-++. .+..+ -..++++|.+.++.++..|+..|+.+. +.+|-.+
T Consensus 301 vqKLr~fiedsDqNLKYlgLlam~KI~ktHp~---~Vqa~--kdlIlrcL~DkD~SIRlrALdLl~gmV----skkNl~e 371 (877)
T KOG1059|consen 301 VQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK---AVQAH--KDLILRCLDDKDESIRLRALDLLYGMV----SKKNLME 371 (877)
T ss_pred HHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH---HHHHh--HHHHHHHhccCCchhHHHHHHHHHHHh----hhhhHHH
Confidence 45555566677777777777777777654432 33332 346788999999999999999999999 6777777
Q ss_pred HH
Q psy15592 116 IK 117 (294)
Q Consensus 116 i~ 117 (294)
|+
T Consensus 372 IV 373 (877)
T KOG1059|consen 372 IV 373 (877)
T ss_pred HH
Confidence 66
No 168
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=74.85 E-value=5 Score=39.59 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=65.9
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh---hHHHHHh
Q psy15592 42 FLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDE---NKRAIKN 118 (294)
Q Consensus 42 lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~---~k~~i~~ 118 (294)
-|....+++.-....++..+.....-.+.+---.|.+|.|..+|++.+..++.+....+.-++.. .++ .|+.+.
T Consensus 654 ~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~--~peyi~~rEWMR- 730 (975)
T COG5181 654 NLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMN--SPEYIGVREWMR- 730 (975)
T ss_pred hcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhc--CcccCCHHHHHH-
Confidence 33445666655555555444321111111112346789999999999999999998888888752 333 244443
Q ss_pred cCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 119 AGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 119 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
.-=.|+++|++ .+.+++++|..++..+|.
T Consensus 731 --IcfeLvd~Lks-~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 731 --ICFELVDSLKS-WNKEIRRNATETFGCISR 759 (975)
T ss_pred --HHHHHHHHHHH-hhHHHHHhhhhhhhhHHh
Confidence 33467888887 588999999888887753
No 169
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=74.48 E-value=4.4 Score=34.33 Aligned_cols=102 Identities=19% Similarity=0.126 Sum_probs=50.4
Q ss_pred ccccccccCCCHHHHHHhhcC---CC---------------HHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC
Q psy15592 25 RNSSLRWRDPNLTEVISFLSN---PN---------------NVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG 86 (294)
Q Consensus 25 ~~~~~i~~~g~i~~Lv~lL~s---~~---------------~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~ 86 (294)
.++..+...|.++.++++|+. .. .++...+...|...+..+.+|+..+.++ ++.++..+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 555677888999999999863 11 2456788889999999999999999887 554444433
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhcc
Q psy15592 87 HESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRK 131 (294)
Q Consensus 87 s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~ 131 (294)
......-..+..+|..+-.+ +.+....+.+.. |..++.++..
T Consensus 112 ~~~~~~~~~~~d~l~~i~~d--N~~L~~~i~e~~-I~~~i~ll~~ 153 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRD--NPELCESISEEH-IEKFIELLRK 153 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT-------------------------
T ss_pred HhhccCCchHHHHHHHHHHC--cHHHHHHhhHHH-HHHHHHHHHH
Confidence 32222223456677777753 666666666544 9999999977
No 170
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=74.00 E-value=20 Score=28.03 Aligned_cols=72 Identities=15% Similarity=0.025 Sum_probs=56.1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc-cHHHHHhcCChHHHHHhhCC---CCHHHHHHHHHHHHHhhc
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDP-NKQKTRSLGGIPPLVKLLGH---ESPDVFRNACGALRNLSY 105 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~-~k~~i~~~g~i~~Lv~lL~s---~~~~v~~~a~~aL~nLs~ 105 (294)
.++..|-+-|+++++.++..|...|-.+..+.+. ....+....-+..|++++.. .++.++..++..+.+.+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3477888888999999999999999888865444 66666665667778888875 477899999988877763
No 171
>KOG3665|consensus
Probab=73.07 E-value=15 Score=37.22 Aligned_cols=93 Identities=24% Similarity=0.344 Sum_probs=68.1
Q ss_pred HHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChH--HHHHHhhccCCC
Q psy15592 99 ALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQ--VVVNHIIIPHSG 176 (294)
Q Consensus 99 aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i--~~L~~ll~~~s~ 176 (294)
+|++++.. ++++...+.+.||+..+.+.++.-...+++..+++.|.|++...++++....---+ .....++ ..
T Consensus 494 ~l~~~t~~--~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ 568 (699)
T KOG3665|consen 494 ALWNITDE--NPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLL---NK 568 (699)
T ss_pred HHHhhhcC--CHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH---hh
Confidence 88899974 89999999999999999999997668899999999999999988776554422122 1222222 12
Q ss_pred CCCCCCCccchhhHHHhHhHHHHhhhcc
Q psy15592 177 WDPVSAGETCWSTIFRNTSGVLRNASSA 204 (294)
Q Consensus 177 ~~~~~~~~~~~~~v~~~a~~~L~nLa~~ 204 (294)
|.. ...-+++.++|+.+...
T Consensus 569 w~~--------~ersY~~~siLa~ll~~ 588 (699)
T KOG3665|consen 569 WDS--------IERSYNAASILALLLSD 588 (699)
T ss_pred cch--------hhHHHHHHHHHHHHHhC
Confidence 221 23567888888888765
No 172
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=73.00 E-value=25 Score=27.52 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=56.2
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhcc--CCCHHHHHHHHHHHHHhcc
Q psy15592 77 GIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRK--TADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 77 ~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~--~~~~~~~~~a~~~L~nLs~ 150 (294)
++..|-+-|+++++.++..|+.+|-.+... ..+.-...+.....+..|++++.. ..+..++..++.++.+.+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkN-cg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKN-CGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-CChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 356788888999999999999999888863 223456777776777889999976 4578888888888877654
No 173
>KOG0414|consensus
Probab=72.58 E-value=15 Score=38.84 Aligned_cols=142 Identities=13% Similarity=0.143 Sum_probs=94.6
Q ss_pred hHHHHHhhCC----CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccch
Q psy15592 78 IPPLVKLLGH----ESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCED 153 (294)
Q Consensus 78 i~~Lv~lL~s----~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~ 153 (294)
.|.+++.++. .+|+++..|.-+|+.+.. - ...+. .-.+|.|+.+|..++++.++-+++.+++.++..-.
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~---i---Sa~fc-es~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMC---I---SAEFC-ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh---h---hHHHH-HHHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 4677777754 578999999999988875 1 12222 34679999999987899999999999999887532
Q ss_pred hhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhc
Q psy15592 154 LKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKS 233 (294)
Q Consensus 154 ~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~ 233 (294)
+- ++. ..+.+...+. + .+..+.+.|.-.|.+|-.++ |.+.-|-+.....+| .
T Consensus 994 nl---ie~-~T~~Ly~rL~------D------~~~~vRkta~lvlshLILnd------miKVKGql~eMA~cl------~ 1045 (1251)
T KOG0414|consen 994 NL---IEP-WTEHLYRRLR------D------ESPSVRKTALLVLSHLILND------MIKVKGQLSEMALCL------E 1045 (1251)
T ss_pred cc---cch-hhHHHHHHhc------C------ccHHHHHHHHHHHHHHHHhh------hhHhcccHHHHHHHh------c
Confidence 21 111 1123333331 1 12458889999999887644 223358888888888 3
Q ss_pred CCCcchHHHHHHHHHHhccCC
Q psy15592 234 NIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 234 ~~~~~~~e~a~~~L~nLs~~~ 254 (294)
++++++..-|-.....|+.+.
T Consensus 1046 D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1046 DPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred CCcHHHHHHHHHHHHHhhhcc
Confidence 555677777776666666554
No 174
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=71.13 E-value=1.1e+02 Score=30.29 Aligned_cols=192 Identities=11% Similarity=0.073 Sum_probs=107.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHh----------------cCChHHHHHhhCCCC-------HHHHH
Q psy15592 38 EVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRS----------------LGGIPPLVKLLGHES-------PDVFR 94 (294)
Q Consensus 38 ~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~----------------~g~i~~Lv~lL~s~~-------~~v~~ 94 (294)
...+++++++.++...|..+-.-+|....+.--.+.. ...+|-|+.+|...+ =.+..
T Consensus 267 lt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sm 346 (858)
T COG5215 267 LTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSM 346 (858)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhh
Confidence 3445667888888888887655555221111111111 235788888886521 13566
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccc--hhhHHHHhhChHHHHHHhhc
Q psy15592 95 NACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE--DLKKSIIDDGLQVVVNHIII 172 (294)
Q Consensus 95 ~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~--~~r~~i~~~g~i~~L~~ll~ 172 (294)
.|..+|.-.+- -....|++. .+..+-+-+.+ ++..-++.+..++..+-..+ ..+..++.. ++|.+...+.
T Consensus 347 aA~sCLqlfaq-----~~gd~i~~p-Vl~FvEqni~~-~~w~nreaavmAfGSvm~gp~~~~lT~~V~q-alp~i~n~m~ 418 (858)
T COG5215 347 AASSCLQLFAQ-----LKGDKIMRP-VLGFVEQNIRS-ESWANREAAVMAFGSVMHGPCEDCLTKIVPQ-ALPGIENEMS 418 (858)
T ss_pred hHHHHHHHHHH-----HhhhHhHHH-HHHHHHHhccC-chhhhHHHHHHHhhhhhcCccHHHHHhhHHh-hhHHHHHhcc
Confidence 66666655552 122233321 22222223333 56777888888998887654 445555544 3444444442
Q ss_pred cCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhcc
Q psy15592 173 PHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSF 252 (294)
Q Consensus 173 ~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~ 252 (294)
+. ..-+..-++||+..++.+-+ ..+-.+ |-++..++..--+. ...+++..+|.+..-||..
T Consensus 419 D~------------~l~vk~ttAwc~g~iad~va---~~i~p~-~Hl~~~vsa~liGl---~D~p~~~~ncsw~~~nlv~ 479 (858)
T COG5215 419 DS------------CLWVKSTTAWCFGAIADHVA---MIISPC-GHLVLEVSASLIGL---MDCPFRSINCSWRKENLVD 479 (858)
T ss_pred cc------------eeehhhHHHHHHHHHHHHHH---HhcCcc-ccccHHHHHHHhhh---hccchHHhhhHHHHHhHHH
Confidence 11 12366788999999986432 333332 44444444333332 2346889999999999998
Q ss_pred CCcc
Q psy15592 253 RCQE 256 (294)
Q Consensus 253 ~~~~ 256 (294)
|..+
T Consensus 480 h~a~ 483 (858)
T COG5215 480 HIAK 483 (858)
T ss_pred hhhh
Confidence 8743
No 175
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=70.25 E-value=15 Score=32.04 Aligned_cols=81 Identities=22% Similarity=0.181 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHhcCChH-------HHHHhhCC-CCHHHHHHHHHHHHHhhcCCCChhh-HHHHHhc
Q psy15592 49 VIKANAAAYLQHLCYMDDPNKQKTRSLGGIP-------PLVKLLGH-ESPDVFRNACGALRNLSYGRQNDEN-KRAIKNA 119 (294)
Q Consensus 49 ~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~-------~Lv~lL~s-~~~~v~~~a~~aL~nLs~~~~~~~~-k~~i~~~ 119 (294)
.=|..|..+|+.|+- .+.|-..|..-+-.. .|+++|.. +++-.++-|.-.|.+|+.+ +... +..-.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~--~~~~~r~iA~q~ 215 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQG--DEAAARAIAMQK 215 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcc--cHHHHHHHHHhh
Confidence 348899999999994 567777776655443 34444433 5778899999999999985 4444 4544589
Q ss_pred CChHHHHHHhccC
Q psy15592 120 GGIPLLINLLRKT 132 (294)
Q Consensus 120 g~i~~Lv~lL~~~ 132 (294)
++|..|+.++...
T Consensus 216 ~~i~~Li~FiE~a 228 (257)
T PF12031_consen 216 PCISHLIAFIEDA 228 (257)
T ss_pred chHHHHHHHHHHH
Confidence 9999999999774
No 176
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=68.77 E-value=23 Score=28.84 Aligned_cols=86 Identities=17% Similarity=0.124 Sum_probs=57.7
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhh-HHHHHhcC--ChHHHHHHhccCCCHHHHHHHHHHHHHhc----c
Q psy15592 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN-KRAIKNAG--GIPLLINLLRKTADAEVKELVTGVLWNLS----S 150 (294)
Q Consensus 78 i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~-k~~i~~~g--~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs----~ 150 (294)
+..+..+|+++++.-+..++..+.-+.. .+ .+.+.+.+ -+..|+.+|+...+..+.+.++.+|..|- .
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~-----~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVE-----QCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4568889999999999988888877773 23 34443333 35678888888777888888888887773 3
Q ss_pred cchhhHHHHhhChHHHHH
Q psy15592 151 CEDLKKSIIDDGLQVVVN 168 (294)
Q Consensus 151 ~~~~r~~i~~~g~i~~L~ 168 (294)
.++...++....+..++.
T Consensus 102 ~p~l~Rei~tp~l~~~i~ 119 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQ 119 (165)
T ss_pred CCchHHHHhhccHHHHHH
Confidence 455555555443333333
No 177
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=68.18 E-value=27 Score=27.38 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=53.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHH-HHHHHHHHHHHhc
Q psy15592 77 GIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE-VKELVTGVLWNLS 149 (294)
Q Consensus 77 ~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~-~~~~a~~~L~nLs 149 (294)
++..|-+-|+++++.++..|+..|-.+... ..+.-...+...+.+..|++++....+.. ++..++.++..-+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkN-cg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKN-CGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-CCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 355788888899999999999998888862 13455677778888999999997743333 7777777766554
No 178
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=68.13 E-value=94 Score=28.15 Aligned_cols=199 Identities=14% Similarity=0.067 Sum_probs=100.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL--GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENK 113 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~--g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k 113 (294)
+...+..+...+...|+.+...|.++...+ .....+... -.+..+.+.++.+..+=+..|++++.-|+..=+.....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~-~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSR-YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 445556666677889999999988866332 233333322 24677888888877665666766666665410012334
Q ss_pred HHHHhcCChHHHHHHhccCC-CHHHHHHHHHHHHHh---cccc-hhhHHHHhhChHH--HHHHhhccCCCCCCCCCCccc
Q psy15592 114 RAIKNAGGIPLLINLLRKTA-DAEVKELVTGVLWNL---SSCE-DLKKSIIDDGLQV--VVNHIIIPHSGWDPVSAGETC 186 (294)
Q Consensus 114 ~~i~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~nL---s~~~-~~r~~i~~~g~i~--~L~~ll~~~s~~~~~~~~~~~ 186 (294)
..+. ....|.|..++.++. ....+..++.+|.-+ +..+ +-....++ .+. +...+.. ..|..+. .....
T Consensus 124 ~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~-~~~~~~~-~~~~~ 198 (309)
T PF05004_consen 124 EEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILK-SDGNAPV-VAAED 198 (309)
T ss_pred HHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcC-cCCCccc-ccCCC
Confidence 4554 357788888888742 334444444444443 3322 22222222 222 1111221 1111110 01112
Q ss_pred hhhHHHhHhHHHHhhhccCHH-HHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHH
Q psy15592 187 WSTIFRNTSGVLRNASSAGEY-ARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILR 248 (294)
Q Consensus 187 ~~~v~~~a~~~L~nLa~~~~~-~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~ 248 (294)
+..++..|..+-.-|...-+. ...... ...++.|+.+|.+. +..++..|--+|.
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~------d~~VRiAAGEaiA 253 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSD------DVDVRIAAGEAIA 253 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCC------CHHHHHHHHHHHH
Confidence 244666655555555433222 112222 35589999999532 4567766544443
No 179
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=66.68 E-value=9.2 Score=28.98 Aligned_cols=42 Identities=26% Similarity=0.348 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHH
Q psy15592 52 ANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFR 94 (294)
Q Consensus 52 ~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~ 94 (294)
......+..++ ..++....+++.|+++.|+.+|.++|.++..
T Consensus 64 d~~Ik~l~~La-~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLA-TAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHcc-CChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 34556677788 4689999999999999999999999887654
No 180
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=66.18 E-value=34 Score=27.18 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=55.4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhcc-----CCCHHHHHHHHHHHHHhc
Q psy15592 77 GIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRK-----TADAEVKELVTGVLWNLS 149 (294)
Q Consensus 77 ~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~-----~~~~~~~~~a~~~L~nLs 149 (294)
++.+|.+-|+++++.++..|+.+|-.+... ..+.-...+...+.+..|++++.. ..+..++..++..+..-+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkN-CG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKN-CGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-cCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 467788889999999999999988888752 134557788888888999999953 246788888887766544
No 181
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=65.47 E-value=29 Score=27.68 Aligned_cols=72 Identities=15% Similarity=0.101 Sum_probs=57.3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-ccHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhc
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDD-PNKQKTRSLGGIPPLVKLLGH-ESPDVFRNACGALRNLSY 105 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~-~~k~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~aL~nLs~ 105 (294)
.++..|.+-|.++++.++..|...|-.+..+.+ ....+|....-+..|+.++.. .++.|+...+..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 457788888899999999999998888775543 356667766777888888887 688999999998887763
No 182
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=64.27 E-value=24 Score=25.81 Aligned_cols=68 Identities=22% Similarity=0.217 Sum_probs=51.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSY 105 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~ 105 (294)
....+..|.++.+-+|..+...|+.+..... ...+...+.+..+...|+++++-+-.+|...|..|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 4556677788989999999999999886543 1122223456677788889999999999999999985
No 183
>KOG1832|consensus
Probab=63.97 E-value=16 Score=37.71 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHhhcCCcc-----------------------------------cHHHHHhcCChHHHHHhhCCCCH-
Q psy15592 47 NNVIKANAAAYLQHLCYMDDP-----------------------------------NKQKTRSLGGIPPLVKLLGHESP- 90 (294)
Q Consensus 47 ~~~~~~~a~~~L~nL~~~~~~-----------------------------------~k~~i~~~g~i~~Lv~lL~s~~~- 90 (294)
+++++..|..+|.|+.+..++ .+..++...||..|+++|+-.+|
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 778888888888887643322 23344556899999999986543
Q ss_pred ----HHHHHHHHHHHHhhcCCCChhhHHHHHh
Q psy15592 91 ----DVFRNACGALRNLSYGRQNDENKRAIKN 118 (294)
Q Consensus 91 ----~v~~~a~~aL~nLs~~~~~~~~k~~i~~ 118 (294)
.++..||++|..|+. ++..++.+.+
T Consensus 755 t~aD~IRalAc~~L~GLaR---~~tVrQIltK 783 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGLAR---DDTVRQILTK 783 (1516)
T ss_pred CcHHHHHHHHHHHHhcccc---CcHHHHHHHh
Confidence 589999999999996 6776666654
No 184
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=63.56 E-value=1.6e+02 Score=29.27 Aligned_cols=130 Identities=14% Similarity=0.148 Sum_probs=77.1
Q ss_pred CCHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCCcccHHHHHhcCCh-HHHHH-hhCCC-CHHHHHHHHHHHHH-hhcCCC
Q psy15592 34 PNLTEVISFLSNPNN-VIKANAAAYLQHLCYMDDPNKQKTRSLGGI-PPLVK-LLGHE-SPDVFRNACGALRN-LSYGRQ 108 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~-~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i-~~Lv~-lL~s~-~~~v~~~a~~aL~n-Ls~~~~ 108 (294)
|.++.+|+....+.| ..+..+..++.+.|- +..-...+..++.| -.++. .++.+ +..++..|+++|.+ |-+
T Consensus 133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce-s~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f--- 208 (858)
T COG5215 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCE-SEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF--- 208 (858)
T ss_pred HHHHHHHHhccccCchHhHHHHHHHHHHHhh-ccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---
Confidence 445566666655444 466777888888884 33334555555543 34444 34443 55788899999887 432
Q ss_pred ChhhHHHHHhcCChH----HHHHHhccCCCHHHHHHHHHHHHHhcc-cchhhHHHHhhChHHHHHHhh
Q psy15592 109 NDENKRAIKNAGGIP----LLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSIIDDGLQVVVNHII 171 (294)
Q Consensus 109 ~~~~k~~i~~~g~i~----~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~r~~i~~~g~i~~L~~ll 171 (294)
.+..+-..+-.. ..++.-. +++.+++..+.+||..+-. +=+.-...++..+..+....+
T Consensus 209 ---v~~nf~~E~erNy~mqvvceatq-~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m 272 (858)
T COG5215 209 ---VQGNFCYEEERNYFMQVVCEATQ-GNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM 272 (858)
T ss_pred ---HHHhhcchhhhchhheeeehhcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222222222 2333333 3699999999999998855 224444566665566666666
No 185
>KOG0414|consensus
Probab=63.27 E-value=27 Score=37.07 Aligned_cols=97 Identities=24% Similarity=0.273 Sum_probs=63.2
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 36 LTEVISFLS-NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 36 i~~Lv~lL~-s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
++.|+..|. ++++.+|.+++.+++-+++..+..-...- +.|..-|.+.++.++..|..+|.+|-. + .
T Consensus 962 l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T-----~~Ly~rL~D~~~~vRkta~lvlshLIL---n----d 1029 (1251)
T KOG0414|consen 962 LPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWT-----EHLYRRLRDESPSVRKTALLVLSHLIL---N----D 1029 (1251)
T ss_pred HHHHHHHHhcCCCceeeecchheccchhhhcccccchhh-----HHHHHHhcCccHHHHHHHHHHHHHHHH---h----h
Confidence 555555554 66666666666666665554332222222 467777788888999999988888886 2 2
Q ss_pred HHHhcCChHHHHHHhccCCCHHHHHHHHHHH
Q psy15592 115 AIKNAGGIPLLINLLRKTADAEVKELVTGVL 145 (294)
Q Consensus 115 ~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L 145 (294)
+|.-.|-+..+..+|.+ ++.++...|-...
T Consensus 1030 miKVKGql~eMA~cl~D-~~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen 1030 MIKVKGQLSEMALCLED-PNAEISDLAKSFF 1059 (1251)
T ss_pred hhHhcccHHHHHHHhcC-CcHHHHHHHHHHH
Confidence 44456888888888877 4777776665333
No 186
>KOG1243|consensus
Probab=62.89 E-value=15 Score=36.79 Aligned_cols=129 Identities=12% Similarity=0.120 Sum_probs=85.8
Q ss_pred HHhhhccccccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHH
Q psy15592 14 EFYSPSLNKKCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVF 93 (294)
Q Consensus 14 ~al~~l~~l~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~ 93 (294)
+++++++...-.....-+..+.+|.|+++.+++|..+|..-...+-... +..-..+...-.+|.+..-+.+.++.++
T Consensus 310 ~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lr 386 (690)
T KOG1243|consen 310 DFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDTNATLR 386 (690)
T ss_pred hhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHH
Confidence 3456666551111111167788999999999999988866555554443 3455567777788999999999999999
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc
Q psy15592 94 RNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151 (294)
Q Consensus 94 ~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 151 (294)
..++.++-.|+. --++. ......+..+-++=. ..+.+++.+.+-||.-++..
T Consensus 387 e~Tlksm~~La~----kL~~~-~Ln~Ellr~~ar~q~-d~~~~irtntticlgki~~~ 438 (690)
T KOG1243|consen 387 EQTLKSMAVLAP----KLSKR-NLNGELLRYLARLQP-DEHGGIRTNTTICLGKIAPH 438 (690)
T ss_pred HHHHHHHHHHHh----hhchh-hhcHHHHHHHHhhCc-cccCcccccceeeecccccc
Confidence 999999988883 22333 222222333333333 34677888888888887764
No 187
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=62.48 E-value=35 Score=27.16 Aligned_cols=71 Identities=11% Similarity=0.028 Sum_probs=55.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhh
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMD-DPNKQKTRSLGGIPPLVKLLG-HESPDVFRNACGALRNLS 104 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~-~~~k~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~aL~nLs 104 (294)
.++..|.+-|.++++.++..|...|-.+..+. ......+...+-+..|+.++. ..++.|+..++..+..-+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 45778888889999999999998888777542 346666777677788888886 457789999988887776
No 188
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=61.23 E-value=1.8e+02 Score=28.88 Aligned_cols=140 Identities=19% Similarity=0.074 Sum_probs=73.2
Q ss_pred hHHHHHhhCC----CCHHHHHHHHHHHHHhhcCC-CCh------hhHHHHHhcCChHHHHHHhcc---CCCHHHHHHHHH
Q psy15592 78 IPPLVKLLGH----ESPDVFRNACGALRNLSYGR-QND------ENKRAIKNAGGIPLLINLLRK---TADAEVKELVTG 143 (294)
Q Consensus 78 i~~Lv~lL~s----~~~~v~~~a~~aL~nLs~~~-~~~------~~k~~i~~~g~i~~Lv~lL~~---~~~~~~~~~a~~ 143 (294)
+..+..++++ +++.+...|+-++..|...- ... ...........++.+...+.. ..+..-+..++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 3445556654 35667777777777776310 010 011222234556777777762 346677778888
Q ss_pred HHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHH
Q psy15592 144 VLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLL 223 (294)
Q Consensus 144 ~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv 223 (294)
+|+|+... ..++.+..++.... .....+...|..+|+.++...+ +-+.+.|.
T Consensus 513 aLgN~g~~----------~~i~~l~~~i~~~~---------~~~~~~R~~Ai~Alr~~~~~~~---------~~v~~~l~ 564 (618)
T PF01347_consen 513 ALGNLGHP----------ESIPVLLPYIEGKE---------EVPHFIRVAAIQALRRLAKHCP---------EKVREILL 564 (618)
T ss_dssp HHHHHT-G----------GGHHHHHTTSTTSS----------S-HHHHHHHHHTTTTGGGT-H---------HHHHHHHH
T ss_pred HhhccCCc----------hhhHHHHhHhhhcc---------ccchHHHHHHHHHHHHHhhcCc---------HHHHHHHH
Confidence 99887532 34566666553111 1124577788999998876554 12234555
Q ss_pred HHHHHhHhhcCCCcchHHHHHHHHHH
Q psy15592 224 YVVKSAIEKSNIGNKSVENCVCILRN 249 (294)
Q Consensus 224 ~lL~~~~~~~~~~~~~~e~a~~~L~n 249 (294)
.++... ..+.+++..|+-+|..
T Consensus 565 ~I~~n~----~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 565 PIFMNT----TEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHH-T----TS-HHHHHHHHHHHHH
T ss_pred HHhcCC----CCChhHHHHHHHHHHh
Confidence 566433 2345677777766654
No 189
>KOG2259|consensus
Probab=60.55 E-value=28 Score=34.79 Aligned_cols=77 Identities=18% Similarity=0.134 Sum_probs=59.2
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 71 KTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 71 ~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
.|+.+|+-.++|+-|.++--+|+.+|+..++.|+.. .+.-. ..++..|++++.+ +...++..++-+|..++.
T Consensus 368 siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s--sP~FA-----~~aldfLvDMfND-E~~~VRL~ai~aL~~Is~ 439 (823)
T KOG2259|consen 368 SIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS--SPGFA-----VRALDFLVDMFND-EIEVVRLKAIFALTMISV 439 (823)
T ss_pred ccccccccceeeeechHHHHHHHHHHHHHHHHHHcC--CCCcH-----HHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHH
Confidence 355566677888888888889999999999999972 33222 2367899999988 588999999999998887
Q ss_pred cchhh
Q psy15592 151 CEDLK 155 (294)
Q Consensus 151 ~~~~r 155 (294)
+-.++
T Consensus 440 ~l~i~ 444 (823)
T KOG2259|consen 440 HLAIR 444 (823)
T ss_pred Hheec
Confidence 64433
No 190
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=60.15 E-value=1e+02 Score=27.50 Aligned_cols=131 Identities=14% Similarity=0.108 Sum_probs=78.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-ccHHHH-------HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDD-PNKQKT-------RSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGR 107 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~-~~k~~i-------~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~ 107 (294)
++.+...+..++++++..|..++.-+...++ +.-... .....+..+.+.+.+.+++++..|+..+.-|-..
T Consensus 66 l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~- 144 (298)
T PF12719_consen 66 LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS- 144 (298)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-
Confidence 5566677777899999999999988553322 111111 1123456778888889999999999999888762
Q ss_pred CChhhHHHHHhcCChHHHHHHhcc---CCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhc
Q psy15592 108 QNDENKRAIKNAGGIPLLINLLRK---TADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIII 172 (294)
Q Consensus 108 ~~~~~k~~i~~~g~i~~Lv~lL~~---~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~ 172 (294)
..... ....+..|+-+--+ ..+..++.-....+-..+......+..+..+.++.+..+..
T Consensus 145 --~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 145 --GRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred --CCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 11111 12223333333322 22345555444455555665544456666677777777764
No 191
>KOG2274|consensus
Probab=59.40 E-value=1.4e+02 Score=31.11 Aligned_cols=167 Identities=14% Similarity=0.088 Sum_probs=98.7
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcC
Q psy15592 42 FLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG-HESPDVFRNACGALRNLSYGRQNDENKRAIKNAG 120 (294)
Q Consensus 42 lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g 120 (294)
+..+..|.+..++.+++...+....-+...+..- +...+..+. +..+.++..|+++++.-+. .+..... ..+
T Consensus 458 l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~f--l~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~-~p~ 530 (1005)
T KOG2274|consen 458 LVYQESPFLLLRAFLTISKFSSSTVINPQLLQHF--LNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSL-QPM 530 (1005)
T ss_pred cccccCHHHHHHHHHHHHHHHhhhccchhHHHHH--HHHHHHhhccCCCCchhHHHHHHHHhccC----ceecccc-chH
Confidence 3346778777788888776553322233222211 234444444 4455678788877766653 1111111 245
Q ss_pred ChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHh
Q psy15592 121 GIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN 200 (294)
Q Consensus 121 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~n 200 (294)
.++.|..+.... ..++.-..+.+|+.....+.-.....++.+.|+...++..++.. +.+...+..++..
T Consensus 531 ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~D----------P~V~~~~qd~f~e 599 (1005)
T KOG2274|consen 531 ILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSED----------PQVASLAQDLFEE 599 (1005)
T ss_pred HHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCC----------chHHHHHHHHHHH
Confidence 667777877664 77888888999999988765566666777888888888644332 2355555555555
Q ss_pred hhccCHHHHHHHHhhcCcHHHHHHHHHHh
Q psy15592 201 ASSAGEYARKKLRECEGLIDSLLYVVKSA 229 (294)
Q Consensus 201 La~~~~~~r~~~~~~~g~i~~Lv~lL~~~ 229 (294)
|+... .+..-|.+ -.+|.|++.+...
T Consensus 600 l~q~~-~~~g~m~e--~~iPslisil~~~ 625 (1005)
T KOG2274|consen 600 LLQIA-ANYGPMQE--RLIPSLISVLQLN 625 (1005)
T ss_pred HHHHH-HhhcchHH--HHHHHHHHHHcCc
Confidence 55422 23333433 5578888888543
No 192
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=59.31 E-value=85 Score=27.33 Aligned_cols=147 Identities=12% Similarity=0.030 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC---C--CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHH
Q psy15592 52 ANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG---H--ESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLI 126 (294)
Q Consensus 52 ~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~---s--~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv 126 (294)
-+|...|.-++ ++++.|..+.++..--.|...|. + ..+-++..+++++..|... +++.....+.....+|.++
T Consensus 118 cnaL~lLQcla-ShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkN-dsq~vi~fLltTeivPLcL 195 (315)
T COG5209 118 CNALNLLQCLA-SHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKN-DSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHh-cCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhC-CCHHHHHHHHhhhHHHHHH
Confidence 45556667677 67899988888764333444443 2 2345888999999999974 3444556666788999999
Q ss_pred HHhccCCCHHHHHHHHHHHHHhcccchh----hHHHHhhChH-----HHHHHhhccCCCCCCCCCCccchhhHHHhHhHH
Q psy15592 127 NLLRKTADAEVKELVTGVLWNLSSCEDL----KKSIIDDGLQ-----VVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGV 197 (294)
Q Consensus 127 ~lL~~~~~~~~~~~a~~~L~nLs~~~~~----r~~i~~~g~i-----~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~ 197 (294)
+++..+ .+--+.-+.-++.-+-.++.. ++.+-+--++ .++.+++. . ....+.+.+..|
T Consensus 196 rIme~g-SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs--~----------~~~RLlKh~iRc 262 (315)
T COG5209 196 RIMELG-SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVS--L----------GSTRLLKHAIRC 262 (315)
T ss_pred HHHHhh-hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh--c----------cchhHHHHHHHH
Confidence 999875 555555555565555554433 2222121122 22223321 1 112377888888
Q ss_pred HHhhhccCHHHHHHHHh
Q psy15592 198 LRNASSAGEYARKKLRE 214 (294)
Q Consensus 198 L~nLa~~~~~~r~~~~~ 214 (294)
--.|+... +.|..+..
T Consensus 263 YlRLsd~p-~aR~lL~~ 278 (315)
T COG5209 263 YLRLSDKP-HARALLSS 278 (315)
T ss_pred heeecCCH-hHHHHHhc
Confidence 87887754 57776653
No 193
>KOG1824|consensus
Probab=58.62 E-value=71 Score=33.50 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=49.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHH-HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15592 38 EVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKT-RSLGGIPPLVKLLGHESPDVFRNACGALRNLSY 105 (294)
Q Consensus 38 ~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i-~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~ 105 (294)
.|++.+.++|.++|.-|+.=|.+-- +++..+... -+...+..|+++|.+.+++++..|.++|.-|+.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eL-qkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvs 76 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTEL-QKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVS 76 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHH-HhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHh
Confidence 6788889999999988888776533 111111000 122457789999999999999999999999985
No 194
>KOG2062|consensus
Probab=58.06 E-value=58 Score=33.15 Aligned_cols=68 Identities=24% Similarity=0.251 Sum_probs=35.8
Q ss_pred hHHHHHh-hCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhH
Q psy15592 78 IPPLVKL-LGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKK 156 (294)
Q Consensus 78 i~~Lv~l-L~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~ 156 (294)
|..|+++ ..+.+.+|++.|+-+|.-+.+. +++ ..+..+.+|..+-++.++..+..+|.--+.+..+++
T Consensus 556 ir~lLh~aVsD~nDDVrRaAVialGFVl~~--dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 556 IRRLLHVAVSDVNDDVRRAAVIALGFVLFR--DPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred HHHhhcccccccchHHHHHHHHHheeeEec--Chh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 3344443 3344666666666666666652 332 234445566554566666666666655444443333
No 195
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=57.89 E-value=46 Score=24.32 Aligned_cols=80 Identities=13% Similarity=-0.016 Sum_probs=52.2
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhc
Q psy15592 124 LLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS 203 (294)
Q Consensus 124 ~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~ 203 (294)
..+..+.+ +.+.++..++..|+.|-...+ ...+--.+++.++...+. +.+.-|.-+|..+|..|+.
T Consensus 7 ~al~~L~d-p~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~------------d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 7 EALSDLND-PLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLK------------DEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHccC-CCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcC------------CCCchHHHHHHHHHHHHHH
Confidence 34455656 477899999999999976655 222223456666666663 1234588899999999997
Q ss_pred cCHHHHHHHHhhcCcHHHHHHHH
Q psy15592 204 AGEYARKKLRECEGLIDSLLYVV 226 (294)
Q Consensus 204 ~~~~~r~~~~~~~g~i~~Lv~lL 226 (294)
..+ ...++.|++..
T Consensus 73 ~~p---------~~vl~~L~~~y 86 (92)
T PF10363_consen 73 RHP---------DEVLPILLDEY 86 (92)
T ss_pred HCh---------HHHHHHHHHHH
Confidence 665 23455655554
No 196
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=57.68 E-value=50 Score=26.20 Aligned_cols=71 Identities=13% Similarity=0.061 Sum_probs=54.4
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhh
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMD-DPNKQKTRSLGGIPPLVKLLGH------ESPDVFRNACGALRNLS 104 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~-~~~k~~i~~~g~i~~Lv~lL~s------~~~~v~~~a~~aL~nLs 104 (294)
.++..+.+-|+++++.++..|...|-.+..+. ......|...+-+.-|++++.. .+++|+...+..+..-+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45788888999999999999998887777543 3466677777777788888853 46789988888876665
No 197
>KOG1077|consensus
Probab=57.55 E-value=1.1e+02 Score=31.17 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=42.7
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccc
Q psy15592 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE 152 (294)
Q Consensus 78 i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~ 152 (294)
+..|-++|.+....++--|+..+..|+. ......++..+ .+.++..|+...|..+++.++-.|+.++...
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~s---s~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLAS---SEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHh---ccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 3445555555555566666666666654 33333444333 6778888885578888888887777665433
No 198
>KOG1992|consensus
Probab=57.55 E-value=1.7e+02 Score=30.27 Aligned_cols=46 Identities=24% Similarity=0.345 Sum_probs=33.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHH
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPP 80 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~ 80 (294)
.+|.++++|.+++..+-.+||.++-.+-...+.+...|...+-+.+
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap 544 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAP 544 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcch
Confidence 3678999999999999999999997755444445555655554443
No 199
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=57.05 E-value=78 Score=23.51 Aligned_cols=66 Identities=11% Similarity=0.168 Sum_probs=50.1
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHH
Q psy15592 76 GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVL 145 (294)
Q Consensus 76 g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L 145 (294)
.-+..|+.-...++......++..|..|.. ++.....+.+-|+...|-++-.. .++..+...-.++
T Consensus 30 ~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~---~~~a~~~l~~iG~~~fL~klr~~-~~~~~~~~id~il 95 (98)
T PF14726_consen 30 LLLKQLLEWFNFPPVPMKEEVLALLLRLLK---SPYAAQILRDIGAVRFLSKLRPN-VEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHh---CcHHHHHHHHccHHHHHHHHHhc-CCHHHHHHHHHHH
Confidence 345666776677777788888899999996 78888999999999998887765 4666666555444
No 200
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=56.95 E-value=1e+02 Score=24.93 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=45.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCC--hHHHHHhhCCCCH-HHHHHHHHHHHHhh
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGG--IPPLVKLLGHESP-DVFRNACGALRNLS 104 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~--i~~Lv~lL~s~~~-~v~~~a~~aL~nLs 104 (294)
+..+..+|++++++-|..++..+...+..+ ....+.+.++ +..|+.+|+.+++ .+...++.+|..|-
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~--~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~ 96 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQC--SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF 96 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 556778889999998988888888777322 1444445443 5788888887544 56777777766664
No 201
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=54.85 E-value=1.3e+02 Score=26.28 Aligned_cols=160 Identities=15% Similarity=0.075 Sum_probs=88.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcC--ChHHHHHHhccC---CCHHHHHHHHHHHHHhcccch
Q psy15592 79 PPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAG--GIPLLINLLRKT---ADAEVKELVTGVLWNLSSCED 153 (294)
Q Consensus 79 ~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g--~i~~Lv~lL~~~---~~~~~~~~a~~~L~nLs~~~~ 153 (294)
..+..++..=..+-+.=+...+|-+.. ++..-..+...+ ....+..++... ..+..+.-++++++|+-.++.
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~ 142 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAAL---HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP 142 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCC---CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHh---CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc
Confidence 344444444333334455666776765 444444443332 245555555442 477888889999999999999
Q ss_pred hhHHHHhhCh---HHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhH
Q psy15592 154 LKKSIIDDGL---QVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAI 230 (294)
Q Consensus 154 ~r~~i~~~g~---i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~ 230 (294)
.+..+.+... +..+..+. +.. . .....+...++.++.|+|..--..+. . ......++..+....
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~----~~~---~--~~~kn~~~A~ATl~~Nlsv~~~~~~~---~-~~~~~~ll~~i~~~~ 209 (268)
T PF08324_consen 143 GRQLLLSHFDSSILELLSSLL----SSL---L--DSNKNVRIALATLLLNLSVLLHKNRS---D-EEWQSELLSSIIEVL 209 (268)
T ss_dssp CHHHHHCTHHTCHHHHCHCCC----TTS------HHHHHHHHHHHHHHHHHHHHHHHCTS-----CCHHHHHHHHHHHHC
T ss_pred cHHHHHhcccchHHHHHHHHh----hcc---c--cccHHHHHHHHHHHHHHHHHHHhcCC---C-hHHHHHHHHHHHHHh
Confidence 9988886322 23333222 100 0 02355777788888999853221110 1 112222333333322
Q ss_pred hhcCCCcchHHHHHHHHHHhccCC
Q psy15592 231 EKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 231 ~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
.....|+++.-.++.+|.+|.+..
T Consensus 210 ~~~~~d~Ea~~R~LvAlGtL~~~~ 233 (268)
T PF08324_consen 210 SREESDEEALYRLLVALGTLLSSS 233 (268)
T ss_dssp HCCHTSHHHHHHHHHHHHHHHCCS
T ss_pred ccccCCHHHHHHHHHHHHHHhccC
Confidence 223346789999999999999654
No 202
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=52.75 E-value=1.3e+02 Score=27.62 Aligned_cols=120 Identities=16% Similarity=0.112 Sum_probs=85.1
Q ss_pred ccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcC---ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy15592 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLG---GIPPLVKLLGHESPDVFRNACGALRNLSYGR 107 (294)
Q Consensus 31 ~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g---~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~ 107 (294)
.....+..+.+.+..++-++...|..++..+-..+...-......+ -+.....+|.+++--+++.++..|+.|-.
T Consensus 161 L~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~elll-- 238 (335)
T PF08569_consen 161 LYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLL-- 238 (335)
T ss_dssp HTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHH--
T ss_pred hCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHH--
Confidence 3455666788888899999999999998885545554444444332 34577789999999999999999999998
Q ss_pred CChhhHHHHH----hcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchh
Q psy15592 108 QNDENKRAIK----NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDL 154 (294)
Q Consensus 108 ~~~~~k~~i~----~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~ 154 (294)
+..|...+. +...+..++.+|++ ....++..|.-+.--...+|+-
T Consensus 239 -dr~n~~vm~~yi~~~~nLkl~M~lL~d-~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 239 -DRSNFNVMTRYISSPENLKLMMNLLRD-KSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp -SGGGHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH-SS-
T ss_pred -chhHHHHHHHHHCCHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHhCCCC
Confidence 677765543 44566777888888 5888999999888777666543
No 203
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=52.71 E-value=1.4e+02 Score=27.65 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=58.0
Q ss_pred hHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHH-HHhcccchhh
Q psy15592 78 IPPLVKLLGHE-SPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVL-WNLSSCEDLK 155 (294)
Q Consensus 78 i~~Lv~lL~s~-~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L-~nLs~~~~~r 155 (294)
+.-+++=|.++ ...++..++--|..-.. ++.-+..+..+|..+.+++.+.+..+......++.++ +-++.+...-
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~---~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA---DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC---CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 45566655533 44677777777777775 8899999999999999999996644443333333344 4444444434
Q ss_pred HHHHhhChHHHHHHhhc
Q psy15592 156 KSIIDDGLQVVVNHIII 172 (294)
Q Consensus 156 ~~i~~~g~i~~L~~ll~ 172 (294)
..+.+.+...++..++.
T Consensus 100 ~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhhchhHHHHHHHHhc
Confidence 44444555566566654
No 204
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=51.92 E-value=38 Score=29.39 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhcc-CHHHHHHHH
Q psy15592 135 AEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSA-GEYARKKLR 213 (294)
Q Consensus 135 ~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~-~~~~r~~~~ 213 (294)
..-..+++..|..+++.++.|..++++.++-++..++...+... . -+.+.-.+.|.+..|-.+ +++..+.+.
T Consensus 114 snRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~--~-----fEyLRltsLGVIgaLvkNdsq~vi~fLl 186 (315)
T COG5209 114 SNRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNS--K-----FEYLRLTSLGVIGALVKNDSQYVIKFLL 186 (315)
T ss_pred hhHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCC--c-----cceeeehHHHHHHHHHhCCCHHHHHHHH
Confidence 34556788899999999999999999999888888875322211 1 123445677888777654 556667777
Q ss_pred hhcCcHHHHHHHHHHhHh
Q psy15592 214 ECEGLIDSLLYVVKSAIE 231 (294)
Q Consensus 214 ~~~g~i~~Lv~lL~~~~~ 231 (294)
. ..++|.++.+++.+++
T Consensus 187 t-TeivPLcLrIme~gSE 203 (315)
T COG5209 187 T-TEIVPLCLRIMELGSE 203 (315)
T ss_pred h-hhHHHHHHHHHHhhhH
Confidence 6 5889999999987764
No 205
>KOG1240|consensus
Probab=51.65 E-value=3.6e+02 Score=29.46 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=43.1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhc---C-CcccHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhh
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCY---M-DDPNKQKTRSLGGIPPLVKLLGHE-SPDVFRNACGALRNLS 104 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~---~-~~~~k~~i~~~g~i~~Lv~lL~s~-~~~v~~~a~~aL~nLs 104 (294)
-.+|.+|.++..+...+|..|..+|..+.. . .+.+..-+.++ .+|.|-+++.+. ...++..-+..|.-|+
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHH
Confidence 458899999999999999999988876431 1 12233333444 467777777763 3334444444444443
No 206
>KOG1943|consensus
Probab=51.65 E-value=3.3e+02 Score=29.13 Aligned_cols=206 Identities=17% Similarity=0.215 Sum_probs=109.6
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCCCChh
Q psy15592 33 DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHES-PDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~-~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
++.++.|...|++.+..++..||.-+..++...+ +...-+ .|...++++.--+ ...--.||-+|..|+..+..
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad~--vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL-- 413 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELADQ--VIGSVIDLFNPAEDDSAWHGACLALAELALRGLL-- 413 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHHH--HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc--
Confidence 5678888888899999999999999999885443 222222 3566666554332 33333677778888752000
Q ss_pred hHHHHHhcCChHHHHHHhcc-------CCCHHHHHHHHHHHHHhccc--c-hhhHHHHhhChHHHHHHhhccCCCCCCCC
Q psy15592 112 NKRAIKNAGGIPLLINLLRK-------TADAEVKELVTGVLWNLSSC--E-DLKKSIIDDGLQVVVNHIIIPHSGWDPVS 181 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~-------~~~~~~~~~a~~~L~nLs~~--~-~~r~~i~~~g~i~~L~~ll~~~s~~~~~~ 181 (294)
..... ...+|.+++-|.- +....++..|+-++|.++.. + +.+. +++.=+..++...+ .|++
T Consensus 414 -lps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~Al-----FDre- 484 (1133)
T KOG1943|consen 414 -LPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVAL-----FDRE- 484 (1133)
T ss_pred -chHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHh-----cCch-
Confidence 00000 1233444444421 12346888999999999653 2 2233 22211111111111 0000
Q ss_pred CCccchhhHHHhHhHH-------------------------HHhhhccCHHHHHHHHhhcCcHHHHHHHHHHh-HhhcCC
Q psy15592 182 AGETCWSTIFRNTSGV-------------------------LRNASSAGEYARKKLRECEGLIDSLLYVVKSA-IEKSNI 235 (294)
Q Consensus 182 ~~~~~~~~v~~~a~~~-------------------------L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~-~~~~~~ 235 (294)
..+.+.|..+ +.|.+..-......+.+.+|....++..+-.. . .+-
T Consensus 485 ------vncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv--~HW 556 (1133)
T KOG1943|consen 485 ------VNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKV--CHW 556 (1133)
T ss_pred ------hhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhccc--ccc
Confidence 0111111111 12222222233445666667777766666433 3 234
Q ss_pred CcchHHHHHHHHHHhccCCccccCCCC
Q psy15592 236 GNKSVENCVCILRNLSFRCQEVEDPNY 262 (294)
Q Consensus 236 ~~~~~e~a~~~L~nLs~~~~~~~~~~~ 262 (294)
|.+++|.+..+|.+|+.... .+...+
T Consensus 557 d~~irelaa~aL~~Ls~~~p-k~~a~~ 582 (1133)
T KOG1943|consen 557 DVKIRELAAYALHKLSLTEP-KYLADY 582 (1133)
T ss_pred cHHHHHHHHHHHHHHHHhhH-Hhhccc
Confidence 67999999999999986664 444433
No 207
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=51.05 E-value=39 Score=26.62 Aligned_cols=72 Identities=22% Similarity=0.215 Sum_probs=52.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHH---HHHHHHHHHHHhc
Q psy15592 77 GIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE---VKELVTGVLWNLS 149 (294)
Q Consensus 77 ~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~---~~~~a~~~L~nLs 149 (294)
++..|-+-|+++++.++..|+.+|-.+... ..+.-...+....-+..|.+++.+..... +++.++..|..-+
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkN-cg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKN-CGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHH-SHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 356788888999999999999888888852 12455677777778888888887644444 7777776665543
No 208
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=49.89 E-value=69 Score=26.75 Aligned_cols=72 Identities=21% Similarity=0.133 Sum_probs=51.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSY 105 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~ 105 (294)
-.++.+++-|+......+..|...+..+.......|..-+--.-|.+|-..|.+.++++...++.+|..|..
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 347788888888777777777777777663312223222222457888889999999999999999999953
No 209
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=49.88 E-value=77 Score=24.72 Aligned_cols=71 Identities=17% Similarity=0.064 Sum_probs=54.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCChHHHHHhhCCCC--HHHHHHHHHHHHHhh
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMD-DPNKQKTRSLGGIPPLVKLLGHES--PDVFRNACGALRNLS 104 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~-~~~k~~i~~~g~i~~Lv~lL~s~~--~~v~~~a~~aL~nLs 104 (294)
.++..|-+-|+++++.++..|...|-.+..+. ......+....-+..|+.++.... +.++..++..+..-+
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 44777888888999999999999888877542 346667777777888888887743 348888888877666
No 210
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=49.77 E-value=46 Score=25.39 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=32.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL 75 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~ 75 (294)
+|+.||.-|..+++++...|..+|...|.. ..+...++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~-~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACED-KEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-hhhHHHHHHc
Confidence 588999999999999999999999999954 4555555553
No 211
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=49.04 E-value=1e+02 Score=27.46 Aligned_cols=70 Identities=21% Similarity=0.322 Sum_probs=47.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhH-HHHHhcCChHHHHHHhcc-----------CCCHHHHHHHHHH
Q psy15592 77 GIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENK-RAIKNAGGIPLLINLLRK-----------TADAEVKELVTGV 144 (294)
Q Consensus 77 ~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k-~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~~a~~~ 144 (294)
.+|+++.++.+..++++..++.+|..+... .+... ..+.+.|-.+.+.+.+.. .....+...+..+
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~--~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEK--VPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHh--CChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 589999999999999999999999999952 22222 235566666655554422 1234566667777
Q ss_pred HHHh
Q psy15592 145 LWNL 148 (294)
Q Consensus 145 L~nL 148 (294)
|..|
T Consensus 198 L~~L 201 (282)
T PF10521_consen 198 LLSL 201 (282)
T ss_pred HHHH
Confidence 7776
No 212
>KOG1967|consensus
Probab=48.65 E-value=47 Score=34.49 Aligned_cols=106 Identities=16% Similarity=0.129 Sum_probs=72.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCC---HHHHHHHHHHHHHhhcCCCChh
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHES---PDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~---~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
.+|.|.+-|+-+|.++|..+..++.-+....+.....-.. -.+|.++.+-++.+ ..++..|+.+|..|.. .-+.
T Consensus 910 LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~--~~P~ 986 (1030)
T KOG1967|consen 910 LLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTR--RLPT 986 (1030)
T ss_pred HHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhc--cCCC
Confidence 3677788888899999999999888766444433332222 13566666555544 5689999999999995 2455
Q ss_pred hHHHHHhcCChHHHHHHhccCCCHHHHHHHHHH
Q psy15592 112 NKRAIKNAGGIPLLINLLRKTADAEVKELVTGV 144 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~ 144 (294)
+.-.-.+-..+..|++.|.+ ...-+++.|..+
T Consensus 987 ~~l~~fr~~Vl~al~k~LdD-kKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 987 KSLLSFRPLVLRALIKILDD-KKRLVRKEAVDT 1018 (1030)
T ss_pred cccccccHHHHHHhhhccCc-HHHHHHHHHHHH
Confidence 55555556677888888877 466677777655
No 213
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=48.57 E-value=50 Score=25.16 Aligned_cols=38 Identities=29% Similarity=0.279 Sum_probs=31.3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q psy15592 77 GIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117 (294)
Q Consensus 77 ~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~ 117 (294)
||+.|+.-|.++++++...|...|...+. ++.+-..++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~---~~~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACE---DKEYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh---chhhHHHHH
Confidence 58899999999999999999999999996 444444444
No 214
>KOG2137|consensus
Probab=46.80 E-value=1.1e+02 Score=30.82 Aligned_cols=69 Identities=23% Similarity=0.135 Sum_probs=47.7
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhc
Q psy15592 76 GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS 149 (294)
Q Consensus 76 g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs 149 (294)
..+|.|...+++.+..+|..++..+..++. .-+ ...++.-.+|.|-.+.....+..++.+++.|+.-+.
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e---~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAE---SID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHH---hcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH
Confidence 455677777778888889888888887773 111 344444556777666555567888888888887776
No 215
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=46.72 E-value=52 Score=29.51 Aligned_cols=56 Identities=25% Similarity=0.262 Sum_probs=44.3
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCC------------hhhHHHHHhcCChHHHHHHhcc
Q psy15592 76 GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQN------------DENKRAIKNAGGIPLLINLLRK 131 (294)
Q Consensus 76 g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~------------~~~k~~i~~~g~i~~Lv~lL~~ 131 (294)
.-+..++.-|.+.+...+..|+++|..++.|... ..|...+.+.|+++.|+.+|+.
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3466888889999999999999999999875221 2355677899999999999954
No 216
>KOG2152|consensus
Probab=46.49 E-value=3.4e+02 Score=27.82 Aligned_cols=65 Identities=12% Similarity=-0.026 Sum_probs=39.7
Q ss_pred cchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhh
Q psy15592 151 CEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLREC 215 (294)
Q Consensus 151 ~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~ 215 (294)
.+..+..+...|+.+.++..+......-...-.+..+......|+..|.+.+..++.+...|..+
T Consensus 491 ~d~~k~elr~Lg~lq~iv~~i~~~~~~~~~~~~e~~~~~tL~rC~rvles~s~hn~snq~yLis~ 555 (865)
T KOG2152|consen 491 GDWFKSELRNLGGLQHIVSKIETNVSPTSDNGDESSVILTLERCLRVLESVSVHNGSNQGYLISL 555 (865)
T ss_pred chhHHHHHHhcchHHHHHHHHHhccCcCCCCcchhhHHHhHHHHHHHhhcccccCcchhHHHHhc
Confidence 34668888888998777766643221111111123334445778888888888777777777654
No 217
>KOG1058|consensus
Probab=45.08 E-value=3.2e+02 Score=28.24 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=11.3
Q ss_pred Hhh-cCCCHHHHHHHHHHHHH
Q psy15592 41 SFL-SNPNNVIKANAAAYLQH 60 (294)
Q Consensus 41 ~lL-~s~~~~~~~~a~~~L~n 60 (294)
.+| ...++..+++|--.|..
T Consensus 178 ~fL~~e~DpsCkRNAFi~L~~ 198 (948)
T KOG1058|consen 178 SFLLTEQDPSCKRNAFLMLFT 198 (948)
T ss_pred HHHHhccCchhHHHHHHHHHh
Confidence 444 34566666666655543
No 218
>KOG2062|consensus
Probab=44.80 E-value=86 Score=31.97 Aligned_cols=61 Identities=30% Similarity=0.312 Sum_probs=45.2
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCChhhHHHH
Q psy15592 44 SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG-HESPDVFRNACGALRNLSYGRQNDENKRAI 116 (294)
Q Consensus 44 ~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i 116 (294)
+..|.++|+.|+.+|.-.++.+++ ..|..|.+|. +.|+.|+..++-+|.--+.| ..++.++
T Consensus 565 sD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAG---tG~~eAi 626 (929)
T KOG2062|consen 565 SDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAG---TGLKEAI 626 (929)
T ss_pred cccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcC---CCcHHHH
Confidence 356788999999999888876543 2566777775 56899999999999888863 4455554
No 219
>KOG1248|consensus
Probab=43.75 E-value=3.9e+02 Score=28.87 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=65.9
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcC
Q psy15592 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL--GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAG 120 (294)
Q Consensus 43 L~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~--g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g 120 (294)
.++.+..+|..+-..|..++.. ++......+. .....|.+-+++.....+..++.+|..|--. .+.+....+. .
T Consensus 663 e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~-~~~e~~~~i~--k 738 (1176)
T KOG1248|consen 663 ENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKL-LSAEHCDLIP--K 738 (1176)
T ss_pred hccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh-ccHHHHHHHH--H
Confidence 3466888999999999998854 5555455443 1223455555555666777777777777642 1223333332 3
Q ss_pred ChHHHHHHhccCCCHHHHHHHHHHHHHhc
Q psy15592 121 GIPLLINLLRKTADAEVKELVTGVLWNLS 149 (294)
Q Consensus 121 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs 149 (294)
.|+.++-.++. .+...++.+..+|.+|.
T Consensus 739 ~I~EvIL~~Ke-~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 739 LIPEVILSLKE-VNVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHHHHHhccc-ccHHHHhhHHHHHHHHH
Confidence 56666666666 58899999999999887
No 220
>KOG1248|consensus
Probab=43.57 E-value=4.6e+02 Score=28.40 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=34.1
Q ss_pred cCCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy15592 44 SNPNNVIKANAAAYLQHLCYMD-DPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLS 104 (294)
Q Consensus 44 ~s~~~~~~~~a~~~L~nL~~~~-~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs 104 (294)
++.+...+..+..+|..+-... .+....+... |+-++=.++..+...+..|-.+|.++.
T Consensus 707 qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~--I~EvIL~~Ke~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 707 QSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL--IPEVILSLKEVNVKARRNAFALLVFIG 766 (1176)
T ss_pred hccchHHHHHHHHHHHHHHHhccHHHHHHHHHH--HHHHHHhcccccHHHHhhHHHHHHHHH
Confidence 3444445555555554443222 2444444443 555555557778888888888888887
No 221
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=40.95 E-value=3.1e+02 Score=25.68 Aligned_cols=92 Identities=16% Similarity=0.185 Sum_probs=73.6
Q ss_pred HHHHHhhCCC---CHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhc-c--CCCHHHHHHHHHHHHHhcccc
Q psy15592 79 PPLVKLLGHE---SPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLR-K--TADAEVKELVTGVLWNLSSCE 152 (294)
Q Consensus 79 ~~Lv~lL~s~---~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~-~--~~~~~~~~~a~~~L~nLs~~~ 152 (294)
..|-.++++. .+.+-..|+..+..+... .+..-..+.+.|.++.+++.+. . .+..++....-.+|..|+-+.
T Consensus 109 ~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~n--ePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~ 186 (379)
T PF06025_consen 109 SSLKHILENPEVFGPSVFSLAINIVSDFIHN--EPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNN 186 (379)
T ss_pred HHHHHHHhCccccchHHHHHHHHHHHHHHhc--CCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH
Confidence 3444455554 356888888899999873 6777788889999999999887 3 346777778888899999999
Q ss_pred hhhHHHHhhChHHHHHHhhc
Q psy15592 153 DLKKSIIDDGLQVVVNHIII 172 (294)
Q Consensus 153 ~~r~~i~~~g~i~~L~~ll~ 172 (294)
...+.+.+.+.++.+.+++.
T Consensus 187 ~Gl~~~~~~~~l~~~f~if~ 206 (379)
T PF06025_consen 187 RGLEKVKSSNPLDKLFEIFT 206 (379)
T ss_pred HHHHHHHhcChHHHHHHHhC
Confidence 99999999999998888884
No 222
>KOG2956|consensus
Probab=40.85 E-value=3.5e+02 Score=26.23 Aligned_cols=186 Identities=15% Similarity=0.120 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHh-hcCCcccHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHH
Q psy15592 48 NVIKANAAAYLQHL-CYMDDPNKQKTRSLGGIPPLVKLLGH-ESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLL 125 (294)
Q Consensus 48 ~~~~~~a~~~L~nL-~~~~~~~k~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~L 125 (294)
.+-+..|..-|..+ +......+.+... ..+..+++.|.+ .+...+..|++.|+-+.. +...+-.=...=+|..+
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~---~Q~~~l~DstE~ai~K~ 376 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLT---NQPARLFDSTEIAICKV 376 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHH---hchHhhhchHHHHHHHH
Confidence 34566666655554 4332223332222 135678888887 677889999999999985 32222111112234445
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccC
Q psy15592 126 INLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAG 205 (294)
Q Consensus 126 v~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~ 205 (294)
++.-++..+..+....=.++.-+++....+.. ..+..++.. .+.. -...+.+.-+.....+..
T Consensus 377 Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I-------~~i~~~Ilt---~D~~-----~~~~~iKm~Tkl~e~l~~-- 439 (516)
T KOG2956|consen 377 LEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI-------VNISPLILT---ADEP-----RAVAVIKMLTKLFERLSA-- 439 (516)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHhhCchhHH-------HHHhhHHhc---Ccch-----HHHHHHHHHHHHHhhcCH--
Confidence 55555543444444444556666665432221 122222210 1110 001122222222222222
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc-cccCCCCC
Q psy15592 206 EYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ-EVEDPNYD 263 (294)
Q Consensus 206 ~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~-~~~~~~~~ 263 (294)
++--..+ ..+.|.+++...+.+ ..++..||-.|..+..+.. ++--|+..
T Consensus 440 EeL~~ll---~diaP~~iqay~S~S------S~VRKtaVfCLVamv~~vG~~~mePhL~ 489 (516)
T KOG2956|consen 440 EELLNLL---PDIAPCVIQAYDSTS------STVRKTAVFCLVAMVNRVGMEEMEPHLE 489 (516)
T ss_pred HHHHHhh---hhhhhHHHHHhcCch------HHhhhhHHHhHHHHHHHHhHHhhhhHhh
Confidence 1111111 345666666664443 3688888888888777775 44444443
No 223
>KOG1824|consensus
Probab=40.25 E-value=4.2e+02 Score=28.24 Aligned_cols=108 Identities=17% Similarity=0.096 Sum_probs=63.2
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc-cHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy15592 33 DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDP-NKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~-~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
..+++.++.+++.....++..+..++-.|...... ......+. .+..+-.++...+..+...|...|..+.. ...
T Consensus 650 ~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Lisesdlhvt~~a~~~L~tl~~---~~p 725 (1233)
T KOG1824|consen 650 TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLISESDLHVTQLAVAFLTTLAI---IQP 725 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHh---ccc
Confidence 34567777777777666776666666555432111 11111111 22334445555677788888888888886 444
Q ss_pred hHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHH
Q psy15592 112 NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWN 147 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~n 147 (294)
.....+..-.++.++.+++++ .++-.++.++.+
T Consensus 726 s~l~~~~~~iL~~ii~ll~Sp---llqg~al~~~l~ 758 (1233)
T KOG1824|consen 726 SSLLKISNPILDEIIRLLRSP---LLQGGALSALLL 758 (1233)
T ss_pred HHHHHHhhhhHHHHHHHhhCc---cccchHHHHHHH
Confidence 444555567788999999763 455555544443
No 224
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=39.92 E-value=56 Score=29.33 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=42.8
Q ss_pred cCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC--------------cccHHHHHhcCChHHHHHhhCC
Q psy15592 32 RDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMD--------------DPNKQKTRSLGGIPPLVKLLGH 87 (294)
Q Consensus 32 ~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~--------------~~~k~~i~~~g~i~~Lv~lL~s 87 (294)
+...+..+++-|.+++...+..|+.+|..++.+. ..|-..+.+.||+++|+.+|+.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3455778899999999999999999998888542 1344455678999999998864
No 225
>KOG0567|consensus
Probab=39.90 E-value=2.4e+02 Score=25.19 Aligned_cols=55 Identities=29% Similarity=0.427 Sum_probs=33.9
Q ss_pred ChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHH
Q psy15592 77 GIPPLVKLLGH--ESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVL 145 (294)
Q Consensus 77 ~i~~Lv~lL~s--~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L 145 (294)
.||.|.+.|.. .++-++-.|+.+|..++ +++ +++.|.+.+.+ ..+-+++.+--+|
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa----~e~---------~~~vL~e~~~D-~~~vv~esc~val 275 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIA----DED---------CVEVLKEYLGD-EERVVRESCEVAL 275 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhc----CHH---------HHHHHHHHcCC-cHHHHHHHHHHHH
Confidence 46777777765 45668888888888888 454 34445566655 2444444444333
No 226
>KOG1078|consensus
Probab=39.71 E-value=4.5e+02 Score=27.21 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=45.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15592 38 EVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSY 105 (294)
Q Consensus 38 ~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~ 105 (294)
.+-..|++.++-+...|+.++.++.... .| .+.. .+..|=-++.++...++..|.++|..++.
T Consensus 249 fl~s~l~~K~emV~~EaArai~~l~~~~--~r-~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 249 FLESCLRHKSEMVIYEAARAIVSLPNTN--SR-ELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred HHHHHHhchhHHHHHHHHHHHhhccccC--Hh-hcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 3334445677778888999988877332 22 2222 57777778888999999999999999986
No 227
>KOG2137|consensus
Probab=39.67 E-value=1.6e+02 Score=29.83 Aligned_cols=129 Identities=12% Similarity=0.046 Sum_probs=61.5
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy15592 33 DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKL-LGHESPDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~l-L~s~~~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
...+|.|.+-+...+..+|..+...+...+.. -+ -.+++.-.+|.|-.+ ++..+..++.+++-|+..+.- .-
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~-iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~l 460 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAES-ID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RL 460 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh-cc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HH
Confidence 34455555555555566666666655554421 11 122222234444333 233455677777777666662 11
Q ss_pred hHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhh
Q psy15592 112 NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHII 171 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll 171 (294)
-+..++ .-+.++.+..+. .++.+....+.+..++....-....++.+.++|++.-+.
T Consensus 461 D~~~v~--d~~lpi~~~~~~-~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls 517 (700)
T KOG2137|consen 461 DKAAVL--DELLPILKCIKT-RDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLS 517 (700)
T ss_pred HHHHhH--HHHHHHHHHhcC-CCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhh
Confidence 223332 233444444444 466666666666555554433323333344555555443
No 228
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=39.38 E-value=1.9e+02 Score=29.53 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=62.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhc---CCcc----cHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-C
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCY---MDDP----NKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYG-R 107 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~---~~~~----~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~-~ 107 (294)
+..++++|.+.+-.+|-....++.|+.- ++++ .+..+... +..|++-|.+.+|-++..|...+..+.-- .
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~L--v~ll~ERl~D~~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDL--VGLLVERLSDTYPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHH--HHHHHHHhhccchHHHHHHHHHHHHHHhCcc
Confidence 5678889988888777666666666552 2221 22222222 45666666778888888888777666520 0
Q ss_pred CChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHh
Q psy15592 108 QNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNL 148 (294)
Q Consensus 108 ~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nL 148 (294)
.....|..+ +...++.+.+ ...-+++++...+.-|
T Consensus 379 k~~~~r~ev-----~~lv~r~lqD-rss~VRrnaikl~SkL 413 (1128)
T COG5098 379 KTVGRRHEV-----IRLVGRRLQD-RSSVVRRNAIKLCSKL 413 (1128)
T ss_pred cccchHHHH-----HHHHHHHhhh-hhHHHHHHHHHHHHHH
Confidence 022223333 3555566656 4667777777666655
No 229
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=38.50 E-value=87 Score=25.99 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=50.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSY 105 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~ 105 (294)
.++.+.++.-+++..++..|..++.-..... .-.. .-.+|.|+.+..++++.++..|...+..+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qG--LvnP---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQG--LVNP---KQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC--CCCh---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 3567777778899999999999888766321 1111 1248999999999999999999999999974
No 230
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=38.25 E-value=2.1e+02 Score=26.09 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcccchhhHHHHhhC--hHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHh
Q psy15592 138 KELVTGVLWNLSSCEDLKKSIIDDG--LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRE 214 (294)
Q Consensus 138 ~~~a~~~L~nLs~~~~~r~~i~~~g--~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~ 214 (294)
+..|+.+|..+...+..-..++..+ ++.-|+.++.+... ....++..|..+|.-|+.........+..
T Consensus 239 RllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~---------v~~~i~~~Al~~L~ai~~~~~~~~~V~~a 308 (329)
T PF06012_consen 239 RLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEK---------VPMDIQTAALRALEAISHKRPRCSDVLRA 308 (329)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCC---------CCHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3345555555666667788888766 88888889865332 22458888999999998766544444443
No 231
>KOG2032|consensus
Probab=37.76 E-value=3.5e+02 Score=26.33 Aligned_cols=114 Identities=15% Similarity=0.054 Sum_probs=70.3
Q ss_pred cccCCCHHHHHHhh----cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcC--ChHHHHHhhC-CCCHHHHHHHHHHHHH
Q psy15592 30 RWRDPNLTEVISFL----SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLG--GIPPLVKLLG-HESPDVFRNACGALRN 102 (294)
Q Consensus 30 i~~~g~i~~Lv~lL----~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g--~i~~Lv~lL~-s~~~~v~~~a~~aL~n 102 (294)
+.+.|.+.-++..| .+++...+.-|++.|.|.+.. .-.+++.++ .+..++.-|. ..+.+|+..+..+|..
T Consensus 250 l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~---~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~ 326 (533)
T KOG2032|consen 250 LDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASG---APDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTM 326 (533)
T ss_pred ccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc---CcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 44556666555555 467778899999999998854 222333332 3556666444 4567899999888888
Q ss_pred hhcCCCChhhHHHH-HhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 103 LSYGRQNDENKRAI-KNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 103 Ls~~~~~~~~k~~i-~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
++- -..++... .=....-.+..+.++ .+++++.++..+...|+-
T Consensus 327 v~~---~~~~~~l~~~~l~ialrlR~l~~s-e~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 327 VLE---KASNDDLESYLLNIALRLRTLFDS-EDDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHH---hhhhcchhhhchhHHHHHHHHHHh-cChhhhhhHHHHHHHHHH
Confidence 773 11111111 011233455566666 688999888877777765
No 232
>KOG1058|consensus
Probab=37.40 E-value=4.9e+02 Score=26.96 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=84.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC-----C------CCHHHHHHHHHHHHHhh
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG-----H------ESPDVFRNACGALRNLS 104 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~-----s------~~~~v~~~a~~aL~nLs 104 (294)
+--++++|++++-+++..+......|+.. .|- .-++..|+ . ++...++.-..+++..+
T Consensus 319 ~mDvLrvLss~dldvr~Ktldi~ldLvss--rNv---------ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ca 387 (948)
T KOG1058|consen 319 IMDVLRVLSSPDLDVRSKTLDIALDLVSS--RNV---------EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACA 387 (948)
T ss_pred HHHHHHHcCcccccHHHHHHHHHHhhhhh--ccH---------HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh
Confidence 33445666677777777776666666532 233 33333332 1 23455666677777777
Q ss_pred cCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc-cchhhHHHHhhChHHHHHHhhccCCCCCCCCCC
Q psy15592 105 YGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAG 183 (294)
Q Consensus 105 ~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~ 183 (294)
.. -++... ..++.|++.+.+. ++......+..++..-. .++.|..|++. ++..+-.+- +
T Consensus 388 v~--Fp~~aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~ii~~-l~~~~~~ir---S-------- 447 (948)
T KOG1058|consen 388 VK--FPEVAA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRASIIEK-LLETFPQIR---S-------- 447 (948)
T ss_pred hc--ChHHHH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHHHHHH-HHHhhhhhc---c--------
Confidence 62 444333 4568999999884 65555455544444432 56767766543 122221111 0
Q ss_pred ccchhhHHHhHhHHHHhhhccCH---HHHHHHHhhcCcHHHHHHHH
Q psy15592 184 ETCWSTIFRNTSGVLRNASSAGE---YARKKLRECEGLIDSLLYVV 226 (294)
Q Consensus 184 ~~~~~~v~~~a~~~L~nLa~~~~---~~r~~~~~~~g~i~~Lv~lL 226 (294)
..+.+.+.|++.--+.... ...+.++..-|-+|.+..=+
T Consensus 448 ----~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGEvp~~~sei 489 (948)
T KOG1058|consen 448 ----SKICRGALWILGEYCEGLSEIQSVIKIIRQSLGEVPIVCSEI 489 (948)
T ss_pred ----cccchhHHHHHHHHHhhhHHHHHHHHHHHHhccccceehHHH
Confidence 2377778887776665554 23344454446666544433
No 233
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=36.55 E-value=34 Score=18.63 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhc
Q psy15592 92 VFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLR 130 (294)
Q Consensus 92 v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~ 130 (294)
++..|+.+|..+- ++ .+++.|++.|+
T Consensus 1 VR~~Aa~aLg~ig----d~---------~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIG----DP---------RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-----SH---------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC----CH---------HHHHHHHHHhc
Confidence 4667777777777 33 25566666654
No 234
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=36.12 E-value=2.5e+02 Score=23.31 Aligned_cols=106 Identities=25% Similarity=0.259 Sum_probs=67.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc-------CCh---------------HHHHHhhCCC-CHHHH
Q psy15592 37 TEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL-------GGI---------------PPLVKLLGHE-SPDVF 93 (294)
Q Consensus 37 ~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~-------g~i---------------~~Lv~lL~s~-~~~v~ 93 (294)
..+--++.++++.+|..|+.+|..+-.. .|..+... +.+ ..|+..|..+ +..+.
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~g---sk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEG---SKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHc---cHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 3444556788999999999999887743 23333211 122 3444444443 66778
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHH----HhccCCCHHHHHHHHHHHHHhccc
Q psy15592 94 RNACGALRNLSYGRQNDENKRAIKNAGGIPLLIN----LLRKTADAEVKELVTGVLWNLSSC 151 (294)
Q Consensus 94 ~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~----lL~~~~~~~~~~~a~~~L~nLs~~ 151 (294)
...+++|..|... .+-.|-. .|-++.++. ++.+ .|..++..++.++..+.+.
T Consensus 120 ~q~lK~la~Lv~~--tPY~rL~---~~ll~~~v~~v~~~l~~-~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 120 TQLLKCLAVLVQA--TPYHRLP---PGLLTEVVTQVRPLLRH-RDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHcc--CChhhcC---HhHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcC
Confidence 8888999988863 4444432 355555544 4445 5888888888888887554
No 235
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=36.12 E-value=2.2e+02 Score=28.19 Aligned_cols=94 Identities=20% Similarity=0.155 Sum_probs=59.5
Q ss_pred CCCHHHHHHhhc----CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC---CHHHHHHHHHHHHHhhc
Q psy15592 33 DPNLTEVISFLS----NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE---SPDVFRNACGALRNLSY 105 (294)
Q Consensus 33 ~g~i~~Lv~lL~----s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~---~~~v~~~a~~aL~nLs~ 105 (294)
...++.+...|. ..+.+.+..+..+|+|+-. + ..++.|..++... +..++..|+.+|+.++.
T Consensus 485 ~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~ 553 (618)
T PF01347_consen 485 EKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK 553 (618)
T ss_dssp GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhh
Confidence 445666666665 4566778888899998863 2 2467777777766 56899999999998875
Q ss_pred CCCChhhHHHHHhcCChHHHHHHhcc-CCCHHHHHHHHHHHHH
Q psy15592 106 GRQNDENKRAIKNAGGIPLLINLLRK-TADAEVKELVTGVLWN 147 (294)
Q Consensus 106 ~~~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~n 147 (294)
. .+. .+ .+.|..+..+ ..+.+++..|..+|..
T Consensus 554 ~--~~~---~v-----~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 554 H--CPE---KV-----REILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp T---HH---HH-----HHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred c--CcH---HH-----HHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 2 221 11 2455566655 5678888777755544
No 236
>KOG0915|consensus
Probab=35.74 E-value=76 Score=34.93 Aligned_cols=126 Identities=18% Similarity=0.175 Sum_probs=70.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc-CChHHHHHhhCCCCHHHHHHHHH---HHHHhhcCCCChh
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL-GGIPPLVKLLGHESPDVFRNACG---ALRNLSYGRQNDE 111 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~-g~i~~Lv~lL~s~~~~v~~~a~~---aL~nLs~~~~~~~ 111 (294)
...|..++.++++..|..++-+|..+...-...+...... ....+..++|.+.++-.|..|.+ ..+.|. +..
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelg----d~~ 895 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELG----DSS 895 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecC----Cch
Confidence 3566677789999999888776655443222122222211 12368888998888777766654 445555 455
Q ss_pred hHHHHHhcCChHHHHHHhccC--------CCHHHHHHHHHHHH------HhcccchhhHHHHhhChHHHHHHhhc
Q psy15592 112 NKRAIKNAGGIPLLINLLRKT--------ADAEVKELVTGVLW------NLSSCEDLKKSIIDDGLQVVVNHIII 172 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~~--------~~~~~~~~a~~~L~------nLs~~~~~r~~i~~~g~i~~L~~ll~ 172 (294)
-|..++ ..|++-|..+ .+.++- .=|+|. +|++..+.+.---+.|=++++.+++.
T Consensus 896 ~k~~LV-----~sL~~tl~~Gkr~~~~vs~eTelF--q~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~ 963 (1702)
T KOG0915|consen 896 LKKSLV-----DSLVNTLTGGKRKAIKVSEETELF--QEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQ 963 (1702)
T ss_pred hHHHHH-----HHHHHHHhccccccceeccchhcc--cCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHH
Confidence 566655 3344433221 111221 113333 55555555555556677788887774
No 237
>KOG1943|consensus
Probab=35.19 E-value=6e+02 Score=27.34 Aligned_cols=168 Identities=13% Similarity=-0.004 Sum_probs=98.1
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhh
Q psy15592 76 GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLK 155 (294)
Q Consensus 76 g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r 155 (294)
+.|..|+..|++.+..++..|+.-+..++.+ .+ ..+. ...|...++++...++...-..++-+|..||.-.-..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~r--lp---~~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSR--LP---PELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHcc--Cc---HHHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 4678888888999999999999999999973 43 2222 2355666666655444555557787888887644332
Q ss_pred HHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCC
Q psy15592 156 KSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNI 235 (294)
Q Consensus 156 ~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~ 235 (294)
...+. .++|++.+-+. +.... . ....-..|...|+-+.|-++...++. .| .+.+..|.+.|--. +-.+.
T Consensus 415 ps~l~-dVvplI~kaL~-Yd~~~--G-~~s~G~~VRDaAcY~~WAf~Rays~~--~l---~p~l~~L~s~LL~~-AlFDr 483 (1133)
T KOG1943|consen 415 PSLLE-DVVPLILKALH-YDVRR--G-QHSVGQHVRDAACYVCWAFARAYSPS--DL---KPVLQSLASALLIV-ALFDR 483 (1133)
T ss_pred hHHHH-HHHHHHHHHhh-hhhhh--c-ccccccchHHHHHHHHHHHHhcCChh--hh---hHHHHHHHHHHHHH-HhcCc
Confidence 22222 34556665553 21100 0 00011236777777778887554322 11 23445454444322 12455
Q ss_pred CcchHHHHHHHHHHhccCCccccCCCC
Q psy15592 236 GNKSVENCVCILRNLSFRCQEVEDPNY 262 (294)
Q Consensus 236 ~~~~~e~a~~~L~nLs~~~~~~~~~~~ 262 (294)
+-.++-.|.+++.....|. ++.|.+
T Consensus 484 evncRRAAsAAlqE~VGR~--~n~p~G 508 (1133)
T KOG1943|consen 484 EVNCRRAASAALQENVGRQ--GNFPHG 508 (1133)
T ss_pred hhhHhHHHHHHHHHHhccC--CCCCCc
Confidence 5568888889998877775 455554
No 238
>KOG2274|consensus
Probab=34.07 E-value=5.9e+02 Score=26.89 Aligned_cols=140 Identities=15% Similarity=0.135 Sum_probs=82.8
Q ss_pred cccCCCHHHHHHhh--cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCC----HHHHHHHHHHHHHh
Q psy15592 30 RWRDPNLTEVISFL--SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHES----PDVFRNACGALRNL 103 (294)
Q Consensus 30 i~~~g~i~~Lv~lL--~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~----~~v~~~a~~aL~nL 103 (294)
..+....|.++.+. .+++|-+...+-..+-.++. ...+.... ...-||.++..|..+. ......+...|..+
T Consensus 567 s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttv 644 (1005)
T KOG2274|consen 567 SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTV 644 (1005)
T ss_pred hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHH
Confidence 33555566555544 35677555555555555662 23333232 2335899999998765 56677777777766
Q ss_pred hcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccc--hhhHHHHhhC-----hHHHHHHhhcc
Q psy15592 104 SYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE--DLKKSIIDDG-----LQVVVNHIIIP 173 (294)
Q Consensus 104 s~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~--~~r~~i~~~g-----~i~~L~~ll~~ 173 (294)
..+..++- -..++ .-+.|++.++.-.+.|.++..++..||+.+-+.. .....=.+.| ++.++.++|+|
T Consensus 645 vr~tp~pL-~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp 719 (1005)
T KOG2274|consen 645 LRNTPSPL-PNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDP 719 (1005)
T ss_pred HhcCCCCc-cHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCC
Confidence 65312332 22222 4577888888777678888889999999885542 2222222222 33666677754
No 239
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=33.89 E-value=2.6e+02 Score=25.40 Aligned_cols=104 Identities=19% Similarity=0.177 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHH-hhcCCcccHHHHHhcC-ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC--ChhhHHHHHhcCChHH
Q psy15592 49 VIKANAAAYLQH-LCYMDDPNKQKTRSLG-GIPPLVKLLGHESPDVFRNACGALRNLSYGRQ--NDENKRAIKNAGGIPL 124 (294)
Q Consensus 49 ~~~~~a~~~L~n-L~~~~~~~k~~i~~~g-~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~--~~~~k~~i~~~g~i~~ 124 (294)
.+|......+.. +...++..+..+.+.+ -+..+++-|..+++++....+.+|+.=...+. ....|..+.....+..
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ 208 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence 777777766544 5556777888887764 57889999999999999999999885333100 1335777778888888
Q ss_pred HHHHhccCCCH----HHHHHHHHHHHHhcccch
Q psy15592 125 LINLLRKTADA----EVKELVTGVLWNLSSCED 153 (294)
Q Consensus 125 Lv~lL~~~~~~----~~~~~a~~~L~nLs~~~~ 153 (294)
|..+... .++ .+.+.+-..|..++.++.
T Consensus 209 l~~Ly~~-~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 209 LASLYSR-DGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred HHHHhcc-cCCcccchHHHHHHHHHHHHhcCCC
Confidence 9887665 344 667777777777766553
No 240
>KOG2956|consensus
Probab=33.68 E-value=4.2e+02 Score=25.67 Aligned_cols=92 Identities=21% Similarity=0.226 Sum_probs=55.2
Q ss_pred hHHHhhhccccccccccccccCC---CHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcccHHHHHhc--CChHHHHHhh
Q psy15592 12 QEEFYSPSLNKKCRNSSLRWRDP---NLTEVISFLSN-PNNVIKANAAAYLQHLCYMDDPNKQKTRSL--GGIPPLVKLL 85 (294)
Q Consensus 12 q~~al~~l~~l~~~~~~~i~~~g---~i~~Lv~lL~s-~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~--g~i~~Lv~lL 85 (294)
+++|+..|..+.-++...+|+.. .+..+++.|+. .++..+..|.++|..++.. .. ..+.+. -+|..+++.-
T Consensus 304 ~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~-Q~--~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 304 RKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN-QP--ARLFDSTEIAICKVLEAA 380 (516)
T ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh-ch--HhhhchHHHHHHHHHHHH
Confidence 34444444444334444455532 24567777765 7888899999999999953 22 233322 3466666766
Q ss_pred CCCCHHHHHHHH-HHHHHhhcC
Q psy15592 86 GHESPDVFRNAC-GALRNLSYG 106 (294)
Q Consensus 86 ~s~~~~v~~~a~-~aL~nLs~~ 106 (294)
++.++++...|. .+++-++.+
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~ 402 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASH 402 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhh
Confidence 777776655554 456666653
No 241
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=32.84 E-value=4.1e+02 Score=24.67 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCChhhHHHHHhcC---ChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHH
Q psy15592 89 SPDVFRNACGALRNLSYGRQNDENKRAIKNAG---GIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQV 165 (294)
Q Consensus 89 ~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g---~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~ 165 (294)
+.++...|+++|..+.+ +++.-..+-+.- .+...+..+.+... -+.-+...||-|+... ....++....+.
T Consensus 59 ~~~L~~qALkll~~~l~---~~~i~~~l~~d~~~~~i~~~i~~l~~~~~--~K~i~~~~l~~ls~Q~-f~~~~~~~~~~~ 132 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLY---HPEIVSTLSDDFASFIIDHSIESLQNPNS--PKSICTHYLWCLSDQK-FSPKIMTSDRVE 132 (372)
T ss_pred chHHHHHHHHHHHHHHc---cHHHHhhCChHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCC-CCCcccchhhHH
Confidence 55788899999999987 555544444322 23444555533211 2333444555555433 122244444444
Q ss_pred HHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcC-cHHHHHHHHHHhHhhcCCCcchHHHHH
Q psy15592 166 VVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEG-LIDSLLYVVKSAIEKSNIGNKSVENCV 244 (294)
Q Consensus 166 ~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g-~i~~Lv~lL~~~~~~~~~~~~~~e~a~ 244 (294)
.+...+..-...- ....+......++.+|....+ ..|.++.. .++.++..+-+.. ..++..|.
T Consensus 133 ~l~~~l~~i~~~~-------~s~si~~erL~i~~~ll~q~p---~~M~~~~~~W~~~l~~~l~~~~------k~ir~~a~ 196 (372)
T PF12231_consen 133 RLLAALHNIKNRF-------PSKSIISERLNIYKRLLSQFP---QQMIKHADIWFPILFPDLLSSA------KDIRTKAI 196 (372)
T ss_pred HHHHHHHHhhccC-------CchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcc------hHHHHHHH
Confidence 4444432111100 113477888899999987443 45665444 6777766665432 35666666
Q ss_pred HHHHHhccCC
Q psy15592 245 CILRNLSFRC 254 (294)
Q Consensus 245 ~~L~nLs~~~ 254 (294)
..+-.+....
T Consensus 197 ~l~~~~~~~l 206 (372)
T PF12231_consen 197 SLLLEAKKCL 206 (372)
T ss_pred HHHHHHHHHh
Confidence 6666555443
No 242
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=32.57 E-value=4.3e+02 Score=24.85 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=71.2
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhh-------------HHHHHhcCChHHHHHHhccCCCHHHHHHHHHH
Q psy15592 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN-------------KRAIKNAGGIPLLINLLRKTADAEVKELVTGV 144 (294)
Q Consensus 78 i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~-------------k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~ 144 (294)
+..|+++|.+ +++...+++++.-|..+ .+.. |+.+. .-.+|.|++-.+.. +.+.+.+-+.+
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d--~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~-~~~~k~~yL~A 346 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSD--SDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEA-DDEIKSNYLTA 346 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcC--cHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhc-ChhhHHHHHHH
Confidence 4567777766 77888889999888861 1221 33333 34567777777664 55577777888
Q ss_pred HHHhcccchhhHHHHh--hChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCH
Q psy15592 145 LWNLSSCEDLKKSIID--DGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGE 206 (294)
Q Consensus 145 L~nLs~~~~~r~~i~~--~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~ 206 (294)
|.++-.+-. +..+.. ..++|++.+-+. ..+..+...+..+|..+....+
T Consensus 347 Ls~ll~~vP-~~vl~~~l~~LlPLLlqsL~------------~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 347 LSHLLKNVP-KSVLLPELPTLLPLLLQSLS------------LPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHhhCC-HHHHHHHHHHHHHHHHHHhC------------CCCHHHHHHHHHHHHHHHHcCH
Confidence 888865432 333332 346688888883 1224588888899988876553
No 243
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=31.64 E-value=70 Score=32.46 Aligned_cols=64 Identities=23% Similarity=0.338 Sum_probs=39.3
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccc
Q psy15592 81 LVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE 152 (294)
Q Consensus 81 Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~ 152 (294)
|.+-|.+.+..+++.|..++.+|-.. + .+--.|-.+.+..+|.+ ++.++...+-..+-.+|.-+
T Consensus 976 LyrrL~De~~~V~rtclmti~fLila-----g--q~KVKGqlg~ma~~L~d-eda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 976 LYRRLGDEDADVRRTCLMTIHFLILA-----G--QLKVKGQLGKMALLLTD-EDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHHc-----c--ceeeccchhhhHhhccC-CcchHHHHHHHHHHHHHhcc
Confidence 44455566667777777777777651 1 12224566667777766 47777766666666665533
No 244
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=31.52 E-value=57 Score=24.73 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHH
Q psy15592 95 NACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEV 137 (294)
Q Consensus 95 ~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~ 137 (294)
.....|..|+. .++.-..+++.|+++.|+.||.+ .+.++
T Consensus 65 ~~Ik~l~~La~---~P~LYp~lv~l~~v~sL~~LL~H-eN~DI 103 (108)
T PF08216_consen 65 EEIKKLSVLAT---APELYPELVELGAVPSLLGLLSH-ENTDI 103 (108)
T ss_pred HHHHHHHHccC---ChhHHHHHHHcCCHHHHHHHHCC-CCcce
Confidence 44567888886 78889999999999999999977 35443
No 245
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=29.85 E-value=3.9e+02 Score=23.54 Aligned_cols=152 Identities=10% Similarity=0.066 Sum_probs=80.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhcc-CCCHHHHHHHHHHHHHhcccchhhHHH
Q psy15592 80 PLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRK-TADAEVKELVTGVLWNLSSCEDLKKSI 158 (294)
Q Consensus 80 ~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~nLs~~~~~r~~i 158 (294)
.|=..|.++++.++..|...|..+... -+... ....-+..|+....+ -.|......++.+|..|..........
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~--lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~ 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLER--LPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHh--CCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh
Confidence 344677889999999999998887742 22211 222234566665543 135555555566666665433321111
Q ss_pred HhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcc
Q psy15592 159 IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNK 238 (294)
Q Consensus 159 ~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~ 238 (294)
+..++..+.... +.+. ........+..+|..|.....+.-+.+. ...+..+++++ +++.|++
T Consensus 78 ----~~~i~~~l~~~~---~~q~----~~q~~R~~~~~ll~~l~~~~~~~l~~~~--~~fv~~~i~~~-----~gEkDPR 139 (262)
T PF14500_consen 78 ----AVKILRSLFQNV---DVQS----LPQSTRYAVYQLLDSLLENHREALQSMG--DDFVYGFIQLI-----DGEKDPR 139 (262)
T ss_pred ----HHHHHHHHHHhC---Chhh----hhHHHHHHHHHHHHHHHHHhHHHHHhch--hHHHHHHHHHh-----ccCCCHH
Confidence 223333333110 0111 1123556677777777654332222222 24455566655 4667788
Q ss_pred hHHHHHHHHHHhccCC
Q psy15592 239 SVENCVCILRNLSFRC 254 (294)
Q Consensus 239 ~~e~a~~~L~nLs~~~ 254 (294)
-...+-.++..+...-
T Consensus 140 nLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 140 NLLLSFKLLKVILQEF 155 (262)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888777777765443
No 246
>KOG0915|consensus
Probab=28.96 E-value=8.8e+02 Score=27.36 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=84.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy15592 38 EVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL--GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRA 115 (294)
Q Consensus 38 ~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~--g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~ 115 (294)
.|.+.=-.|+..+| .|..-|++.--. +.|..+-++ ..+.-|+.-|.+..=++++.+|.||.-|--|+..++-+.+
T Consensus 1002 rLyRY~yDP~~~Vq-~aM~sIW~~Li~--D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~ 1078 (1702)
T KOG0915|consen 1002 RLYRYQYDPDKKVQ-DAMTSIWNALIT--DSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEK 1078 (1702)
T ss_pred HHhhhccCCcHHHH-HHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 33333335666666 677778874422 233333332 3455666777777778999999999999986444555555
Q ss_pred HHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc-----cc--hh-h-HHHHhhChHHHHHHhhccCCCCCCCCCCccc
Q psy15592 116 IKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-----CE--DL-K-KSIIDDGLQVVVNHIIIPHSGWDPVSAGETC 186 (294)
Q Consensus 116 i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-----~~--~~-r-~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~ 186 (294)
+- ..-..+++.+.+ -.+.+++.+-.+...|+. ++ +. + .+++ .-++|+|. . .|.- +.
T Consensus 1079 lp--elw~~~fRvmDD-IKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl---~--~gim------s~ 1143 (1702)
T KOG0915|consen 1079 LP--ELWEAAFRVMDD-IKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DIILPFLL---D--EGIM------SK 1143 (1702)
T ss_pred HH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHHHHHHh---c--cCcc------cc
Confidence 54 234556666655 466777665555444421 11 11 1 1111 22334443 1 1111 12
Q ss_pred hhhHHHhHhHHHHhhhccCH
Q psy15592 187 WSTIFRNTSGVLRNASSAGE 206 (294)
Q Consensus 187 ~~~v~~~a~~~L~nLa~~~~ 206 (294)
...+.+-+.+.+..|+....
T Consensus 1144 v~evr~~si~tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1144 VNEVRRFSIGTLMDLAKSSG 1163 (1702)
T ss_pred hHHHHHHHHHHHHHHHHhch
Confidence 24577888899999987654
No 247
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=28.43 E-value=1.1e+02 Score=24.01 Aligned_cols=71 Identities=17% Similarity=0.078 Sum_probs=49.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCChHHHHHhhCCC-CHH---HHHHHHHHHHHhh
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMD-DPNKQKTRSLGGIPPLVKLLGHE-SPD---VFRNACGALRNLS 104 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~-~~~k~~i~~~g~i~~Lv~lL~s~-~~~---v~~~a~~aL~nLs 104 (294)
.++..|-+-|.++++.++..|...|-.+..+. +.....+....-+..|..++.+. ... |+..+...|...+
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 34677888888999999999988888777543 34555555555567777776643 333 7888877776555
No 248
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=27.98 E-value=4.5e+02 Score=23.72 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=66.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcC--CcccHHHHHhcCChHHHHHhhCCCC--HHHHHHHHHHHHHhhc-CCCCh
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYM--DDPNKQKTRSLGGIPPLVKLLGHES--PDVFRNACGALRNLSY-GRQND 110 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~--~~~~k~~i~~~g~i~~Lv~lL~s~~--~~v~~~a~~aL~nLs~-~~~~~ 110 (294)
++.+.+.++.+..+.+..|+.++.-++.. .......+.+. ..|.|...+.++. ..++..++.+|.-+++ +..+.
T Consensus 88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~ 166 (309)
T PF05004_consen 88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE 166 (309)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh
Confidence 44555666666666677777776665543 22334444442 4677878887654 4555566656655543 00122
Q ss_pred hhHHHHHhcCChHHHHH--Hhcc---------CCCHHHHHHHHHHHHHhcc-cchhhH-HHHhhChHHHHHHhhc
Q psy15592 111 ENKRAIKNAGGIPLLIN--LLRK---------TADAEVKELVTGVLWNLSS-CEDLKK-SIIDDGLQVVVNHIII 172 (294)
Q Consensus 111 ~~k~~i~~~g~i~~Lv~--lL~~---------~~~~~~~~~a~~~L~nLs~-~~~~r~-~i~~~g~i~~L~~ll~ 172 (294)
+...... ..+..+.. .++. ..++.+...++.+-.-|.+ .+..+- ... ...++.+..+|.
T Consensus 167 ~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~ 238 (309)
T PF05004_consen 167 EETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLD 238 (309)
T ss_pred hHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhc
Confidence 2222111 12221111 1221 1134677777766555543 444222 222 345677887873
No 249
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=27.65 E-value=2.3e+02 Score=25.77 Aligned_cols=42 Identities=24% Similarity=0.188 Sum_probs=33.4
Q ss_pred CCcccHHHHHhcC--ChHHHHHhhCCCC---HHHHHHHHHHHHHhhc
Q psy15592 64 MDDPNKQKTRSLG--GIPPLVKLLGHES---PDVFRNACGALRNLSY 105 (294)
Q Consensus 64 ~~~~~k~~i~~~g--~i~~Lv~lL~s~~---~~v~~~a~~aL~nLs~ 105 (294)
.+......+...+ .+..|+++++.++ ..++..|..+|..++.
T Consensus 251 ~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~ 297 (329)
T PF06012_consen 251 PESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISH 297 (329)
T ss_pred CCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHh
Confidence 4556777777776 7889999998753 5799999999999996
No 250
>KOG0301|consensus
Probab=27.62 E-value=6.7e+02 Score=25.52 Aligned_cols=129 Identities=11% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL--GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENK 113 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~--g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k 113 (294)
+..++..+. .++..+..++++|.|+- .++-.+..+... -.+.+++..=..++..++..-+....|++. -.-
T Consensus 591 ~~~li~~~~-~~~an~ll~vR~L~N~f-~~~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv-----~l~ 663 (745)
T KOG0301|consen 591 VGTLIPILN-ADPANQLLVVRCLANLF-SNPAGRELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSV-----LLI 663 (745)
T ss_pred HHhhhcccc-cchhHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHH-----HHH
Q ss_pred HHHHhcCChHHHHHHhcc----CCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhh
Q psy15592 114 RAIKNAGGIPLLINLLRK----TADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHII 171 (294)
Q Consensus 114 ~~i~~~g~i~~Lv~lL~~----~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll 171 (294)
+.--+.++.+.|...+.. ..+.+.....+-+|.+|...+....++...--+.-+.+-+
T Consensus 664 ~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~ 725 (745)
T KOG0301|consen 664 QDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKL 725 (745)
T ss_pred hcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHH
No 251
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=27.62 E-value=4.7e+02 Score=23.76 Aligned_cols=159 Identities=16% Similarity=0.072 Sum_probs=104.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCcccHHHHHhcC--ChHHHHHhhCCC-----C--------HHHHHHHHHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCY-MDDPNKQKTRSLG--GIPPLVKLLGHE-----S--------PDVFRNACGA 99 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~-~~~~~k~~i~~~g--~i~~Lv~lL~s~-----~--------~~v~~~a~~a 99 (294)
+..+.+.|++....+...+...|..++. ........+...= ..+.+.+++... . +.++....+.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788888888888888888899999885 5556666666542 345666666421 1 2677777766
Q ss_pred HHHhhcCCCChhhHHHHH-hcCChHHHHHHhccCCCHHHHHHHHHHHHH-hcccc----hhhHHHHhhChHHHHHHhhcc
Q psy15592 100 LRNLSYGRQNDENKRAIK-NAGGIPLLINLLRKTADAEVKELVTGVLWN-LSSCE----DLKKSIIDDGLQVVVNHIIIP 173 (294)
Q Consensus 100 L~nLs~~~~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~n-Ls~~~----~~r~~i~~~g~i~~L~~ll~~ 173 (294)
+..+... .++..+..+. +.+.+..+.+-|.. .++++....+.+|+. +-.++ ..|-.+.++..+..+..+..
T Consensus 138 ~Lsfl~~-~~~~~~~~lL~~~~~~~~l~k~l~~-D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~- 214 (330)
T PF11707_consen 138 WLSFLSS-GDPELKRDLLSQKKLMSALFKGLRK-DPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYS- 214 (330)
T ss_pred HHHHHcc-CCHHHHHHHHHcCchHHHHHhcccC-CCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhc-
Confidence 5555432 3677777776 45567778888877 588999999999984 44333 44667778888877777653
Q ss_pred CCCCCCCCCCccchhhHHHhHhHHHHhhhcc
Q psy15592 174 HSGWDPVSAGETCWSTIFRNTSGVLRNASSA 204 (294)
Q Consensus 174 ~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~ 204 (294)
++.. .....+.+.+-..|..++.+
T Consensus 215 ---~~~~----~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 215 ---RDGE----DEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred ---ccCC----cccchHHHHHHHHHHHHhcC
Confidence 1111 11123556666677776654
No 252
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.08 E-value=3.5e+02 Score=25.20 Aligned_cols=69 Identities=20% Similarity=0.176 Sum_probs=52.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSY 105 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~ 105 (294)
.+..++.++..++...+..++..+.......+-++..+.+. -+.+..++.+..++++...+.+|.+.-.
T Consensus 8 ~~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~--~~l~~~Ll~d~s~~vrr~lA~aL~~~~~ 76 (364)
T COG5330 8 TDQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQF--EDLARPLLDDSSEEVRRELAAALAQCET 76 (364)
T ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHH--HHHHHHHhhCccHHHHHHHHHHHHhCCc
Confidence 36678888988888888899999888776655477777664 4455567778888999999988877653
No 253
>KOG1060|consensus
Probab=26.83 E-value=7.5e+02 Score=25.84 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=49.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRA 115 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~ 115 (294)
-.-|..||.++....+..|..-|..+.... ++ +- .-+|..|+...+.+.+++.-.---|..-+- ...+ .+
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G-~d---vS--~~Fp~VVKNVaskn~EVKkLVyvYLlrYAE---eqpd-LA 106 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKG-KD---VS--LLFPAVVKNVASKNIEVKKLVYVYLLRYAE---EQPD-LA 106 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcC-Cc---HH--HHHHHHHHHhhccCHHHHHHHHHHHHHHhh---cCCC-ce
Confidence 356788888887777777776555433222 22 11 125667777777777766543333322232 1110 01
Q ss_pred HHhcCChHHHHHHhccCCCHHHHHHHHHHHHH
Q psy15592 116 IKNAGGIPLLINLLRKTADAEVKELVTGVLWN 147 (294)
Q Consensus 116 i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~n 147 (294)
+ =-|..+-+-|++ ++..++..|+++|..
T Consensus 107 L---LSIntfQk~L~D-pN~LiRasALRvlSs 134 (968)
T KOG1060|consen 107 L---LSINTFQKALKD-PNQLIRASALRVLSS 134 (968)
T ss_pred e---eeHHHHHhhhcC-CcHHHHHHHHHHHHh
Confidence 1 123344445555 365666555555544
No 254
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=26.41 E-value=4.6e+02 Score=23.22 Aligned_cols=69 Identities=23% Similarity=0.260 Sum_probs=45.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccH-HHHHhcCChH----HHHHhhC--------CCCHHHHHHHHHHHHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNK-QKTRSLGGIP----PLVKLLG--------HESPDVFRNACGALRN 102 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k-~~i~~~g~i~----~Lv~lL~--------s~~~~v~~~a~~aL~n 102 (294)
+|++..++.+.+++.|..++..|..+...-+... ..+.+.|-.. +|...|. .+...+...+-.+|..
T Consensus 121 iP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~ 200 (282)
T PF10521_consen 121 IPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLS 200 (282)
T ss_pred HhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHH
Confidence 7888889999999999999999999884322222 1255555443 4444443 2344577777777777
Q ss_pred hh
Q psy15592 103 LS 104 (294)
Q Consensus 103 Ls 104 (294)
|.
T Consensus 201 L~ 202 (282)
T PF10521_consen 201 LL 202 (282)
T ss_pred HH
Confidence 74
No 255
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=26.09 E-value=3.7e+02 Score=22.12 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=55.2
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc-cchhhH
Q psy15592 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKK 156 (294)
Q Consensus 78 i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~r~ 156 (294)
++.++++.-+++..++..|...+.-+... .--+- ...+|.|+.|..+ +++.++..|...+..+.. .++.-.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~q--GLvnP-----~~cvp~lIAL~ts-~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQ--GLVNP-----KQCVPTLIALETS-PNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhc--CCCCh-----HHHHhHhhhhhCC-CChHHHHHHHHHHHHHHHHhHHHHH
Confidence 57788888899999999999988877631 11111 2367899998877 699999999999999865 444433
Q ss_pred HHHhhCh
Q psy15592 157 SIIDDGL 163 (294)
Q Consensus 157 ~i~~~g~ 163 (294)
.=..+|+
T Consensus 82 ~~~~~gi 88 (187)
T PF12830_consen 82 SRYSEGI 88 (187)
T ss_pred HHHHHHH
Confidence 3333444
No 256
>KOG1967|consensus
Probab=25.03 E-value=4.5e+02 Score=27.76 Aligned_cols=132 Identities=15% Similarity=0.090 Sum_probs=72.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc-CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhh
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL-GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN 112 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~-g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~ 112 (294)
..+|.|+....+.....+-.=..+|.+.-. +......+-+. .-+|.|++.|..++..++..+..++.-+... .+..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~-~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~--~~tL 943 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLT-NVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE--SETL 943 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHh-cCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh--cccc
Confidence 446777777775555555555566666442 22222222222 2467888888889999988888887776631 1111
Q ss_pred -HHHHHhcCChHHHHHHhccCCC---HHHHHHHHHHHHHhcc-cchhhHHHHhhChHHHHHHhh
Q psy15592 113 -KRAIKNAGGIPLLINLLRKTAD---AEVKELVTGVLWNLSS-CEDLKKSIIDDGLQVVVNHII 171 (294)
Q Consensus 113 -k~~i~~~g~i~~Lv~lL~~~~~---~~~~~~a~~~L~nLs~-~~~~r~~i~~~g~i~~L~~ll 171 (294)
...+ .-.+|.+..+=++ .+ ..+++.|+-+|..|.. .|...-.-.+...+..+.+.|
T Consensus 944 ~t~~~--~Tlvp~lLsls~~-~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~L 1004 (1030)
T KOG1967|consen 944 QTEHL--STLVPYLLSLSSD-NDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKIL 1004 (1030)
T ss_pred chHHH--hHHHHHHHhcCCC-CCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhcc
Confidence 1111 1233444443333 23 5677888888888876 443332222333444455555
No 257
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=25.01 E-value=2.9e+02 Score=20.47 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=48.0
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHH
Q psy15592 33 DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGAL 100 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL 100 (294)
.+.+..|++-...++......+...+..+.. ++.....+.+.|+...|-++-..-++..+...-..+
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3445566666667777778888899999985 577888888999999877776556666665554443
No 258
>KOG1822|consensus
Probab=24.98 E-value=1e+03 Score=27.62 Aligned_cols=106 Identities=20% Similarity=0.192 Sum_probs=58.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHH----HHHHHHHHhhcCCCChh
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFR----NACGALRNLSYGRQNDE 111 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~----~a~~aL~nLs~~~~~~~ 111 (294)
+..++..|..+++..+-.++.++..++.. .+....+... ..-.++-|++..+.+.+ .|.++|..=.. .-.
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~-v~~~~f~a~~--aq~~fdklas~~d~i~R~ghslalg~lhkyvg---s~~ 951 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQV-VGSAPFVASL--AQNSFDKLASARDPITRTGHSLALGCLHKYVG---SIG 951 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHh-ccccchHHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcc---CCC
Confidence 44566667778888888888888888843 3333333322 44556666664443332 23333322111 011
Q ss_pred hHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhc
Q psy15592 112 NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS 149 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs 149 (294)
+.++. ..++..|..+..++.++.++..++.++.-+.
T Consensus 952 s~qhl--~t~v~illal~~Ds~~p~VqtwSL~al~~i~ 987 (2067)
T KOG1822|consen 952 SGQHL--NTSVSILLALATDSTSPVVQTWSLHALALIL 987 (2067)
T ss_pred Cchhc--ccHHHHHHHHhhcCCCchhhhhHHHHHHHHH
Confidence 11111 2345666677777667788888777766553
No 259
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=24.83 E-value=5.5e+02 Score=23.60 Aligned_cols=167 Identities=12% Similarity=-0.003 Sum_probs=118.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcC---Ch
Q psy15592 46 PNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAG---GI 122 (294)
Q Consensus 46 ~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g---~i 122 (294)
+++++-..+...|+.+++ .+.....+.....+..+++....++=++...|..++..+-.. +..........+ -.
T Consensus 135 ~~~dial~~g~mlRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~--hk~~~a~fl~~n~d~ff 211 (335)
T PF08569_consen 135 ENPDIALNCGDMLRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR--HKKLVAEFLSNNYDRFF 211 (335)
T ss_dssp GSTTTHHHHHHHHHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS--SHHHHHHHHHHTHHHHH
T ss_pred cCccccchHHHHHHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHH
Confidence 455667778888888885 566666777777888999999999999999999999997752 555555555332 23
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHh----hChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHH
Q psy15592 123 PLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIID----DGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVL 198 (294)
Q Consensus 123 ~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~----~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L 198 (294)
...-.+|.+ ++.-++++++..|..|-.+..|-..+.. ..-+.+++.+|...+ ..|+..|..+.
T Consensus 212 ~~~~~Ll~s-~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~s------------k~Iq~eAFhvF 278 (335)
T PF08569_consen 212 QKYNKLLES-SNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKS------------KNIQFEAFHVF 278 (335)
T ss_dssp HHHHHHCT--SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-------------HHHHHHHHHHH
T ss_pred HHHHHHccC-CCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcc------------hhhhHHHHHHH
Confidence 456667777 5999999999999999888877665543 345677777774211 34888888887
Q ss_pred Hhhhcc---CHHHHHHHHhhcCcHHHHHHHHHHhHh
Q psy15592 199 RNASSA---GEYARKKLRECEGLIDSLLYVVKSAIE 231 (294)
Q Consensus 199 ~nLa~~---~~~~r~~~~~~~g~i~~Lv~lL~~~~~ 231 (294)
.-...+ +++.++.+... =+.|+.++..-..
T Consensus 279 KvFVANp~K~~~I~~iL~~N---r~kLl~fl~~f~~ 311 (335)
T PF08569_consen 279 KVFVANPNKPPPIVDILIKN---REKLLRFLKDFHT 311 (335)
T ss_dssp HHHHH-SS-BHHHHHHHHHT---HHHHHHHHHTTTT
T ss_pred HHHHhCCCCChHHHHHHHHH---HHHHHHHHHhCCC
Confidence 776544 44566666652 4688999976543
No 260
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=24.45 E-value=3e+02 Score=21.31 Aligned_cols=48 Identities=19% Similarity=0.114 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15592 53 NAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSY 105 (294)
Q Consensus 53 ~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~ 105 (294)
+...-|..+++.+...-..+ ...|.+-|++.++.|+..+++.|..|+.
T Consensus 20 y~~~Eia~~t~~s~~~~~ei-----~d~L~kRL~~~~~hVK~K~Lrilk~l~~ 67 (122)
T cd03572 20 YLYEEIAKLTRKSVGSCQEL-----LEYLLKRLKRSSPHVKLKVLKIIKHLCE 67 (122)
T ss_pred HHHHHHHHHHHcCHHHHHHH-----HHHHHHHhcCCCCcchHHHHHHHHHHHh
Confidence 33445667776543333344 4478888899899999999999999985
No 261
>KOG0567|consensus
Probab=24.30 E-value=5.2e+02 Score=23.13 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=38.3
Q ss_pred CCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15592 33 DPNLTEVISFLSN--PNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSY 105 (294)
Q Consensus 33 ~g~i~~Lv~lL~s--~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~ 105 (294)
...++.|+..|.. ..+-+|..|+.+|.++- . ++ ..+.+-++.+++..+++..+..++..+-+
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~~dp~~~v~ETc~lAi~rle~ 129 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYIKDPCKEVRETCELAIKRLEW 129 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHhcCCccccchHHHHHHHHHHH
Confidence 3446677776653 33445566777776654 1 22 23445555566677888888888888876
No 262
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=24.27 E-value=3.6e+02 Score=21.26 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=50.4
Q ss_pred ChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHH-HHHHhccC--CCHHHHHHHHHHHHHhcc
Q psy15592 77 GIPPLVKLLG-HESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPL-LINLLRKT--ADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 77 ~i~~Lv~lL~-s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~-Lv~lL~~~--~~~~~~~~a~~~L~nLs~ 150 (294)
++.+|-+-|. +.++.++..|+..|-.+... ....-..++...+.+.. |++++... .+..++..++..+...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkN-CG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKN-CGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 3556666666 45888888888888887752 13445677777788887 89998642 245778888777766653
No 263
>KOG1020|consensus
Probab=23.99 E-value=1.1e+03 Score=26.71 Aligned_cols=140 Identities=12% Similarity=0.158 Sum_probs=0.0
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHH-HhcccchhhH
Q psy15592 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLW-NLSSCEDLKK 156 (294)
Q Consensus 78 i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~-nLs~~~~~r~ 156 (294)
+..++..|..+...++..|+++|.++. ..-...+.....-..+-.=+.++ ...+++.|+..++ .+...++.-.
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~iv-----e~Dp~vL~~~dvq~~Vh~R~~Ds-sasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIV-----EADPSVLSRPDVQEAVHGRLNDS-SASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHH-----hcChHhhcCHHHHHHHHHhhccc-hhHHHHHHHHHHhhhhhccHHHHH
Q ss_pred HHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCC
Q psy15592 157 SIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIG 236 (294)
Q Consensus 157 ~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~ 236 (294)
+..+. +...++ -.|.. |.+.+..+|+-++...+.. .-.+...+++++... +..
T Consensus 892 qyY~~----i~erIl--Dtgvs-----------VRKRvIKIlrdic~e~pdf-------~~i~~~cakmlrRv~---DEE 944 (1692)
T KOG1020|consen 892 QYYDQ----IIERIL--DTGVS-----------VRKRVIKILRDICEETPDF-------SKIVDMCAKMLRRVN---DEE 944 (1692)
T ss_pred HHHHH----HHhhcC--CCchh-----------HHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHhc---cch
Q ss_pred cchHHHHHHHHHHh
Q psy15592 237 NKSVENCVCILRNL 250 (294)
Q Consensus 237 ~~~~e~a~~~L~nL 250 (294)
..+++-+.-++.++
T Consensus 945 g~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 945 GNIKKLVRETFLKL 958 (1692)
T ss_pred hHHHHHHHHHHHHH
No 264
>KOG1087|consensus
Probab=23.37 E-value=2e+02 Score=27.78 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=52.4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccC-CCHHHHHHHHHHH
Q psy15592 77 GIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKT-ADAEVKELVTGVL 145 (294)
Q Consensus 77 ~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L 145 (294)
++.+|.+.+.+.++.++..|+.+|--+... ....-...|.+.+.+..+|++.+.. .+..+++.++..|
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkN-CG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI 107 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKN-CGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELI 107 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHH
Confidence 466788888888889999888877666641 1244466788899999999999886 6788888888776
No 265
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=23.35 E-value=3.2e+02 Score=27.34 Aligned_cols=86 Identities=20% Similarity=0.172 Sum_probs=54.7
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCCh
Q psy15592 44 SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG-HESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGI 122 (294)
Q Consensus 44 ~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i 122 (294)
+..+.++|+.|+.+|.-.|+.+. ..++..+++|. +.+..++...+-+|.-.+.| ...+. ++
T Consensus 562 sD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag---~G~~~------a~ 623 (926)
T COG5116 562 SDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAG---TGDKV------AT 623 (926)
T ss_pred ccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcC---CccHH------HH
Confidence 45688899999999998886542 23555667665 46778888888888777763 22222 23
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHh
Q psy15592 123 PLLINLLRKTADAEVKELVTGVLWNL 148 (294)
Q Consensus 123 ~~Lv~lL~~~~~~~~~~~a~~~L~nL 148 (294)
..|-.++.+ ...-++..++-++..+
T Consensus 624 diL~~L~~D-~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 624 DILEALMYD-TNDFVRQSAMIAVGMI 648 (926)
T ss_pred HHHHHHhhC-cHHHHHHHHHHHHHHH
Confidence 444455555 3555666666666555
No 266
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=23.16 E-value=2.3e+02 Score=26.13 Aligned_cols=109 Identities=12% Similarity=-0.017 Sum_probs=59.7
Q ss_pred HHHHHHhhcC------C-CHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCC----------CCHHHHHHHHH
Q psy15592 36 LTEVISFLSN------P-NNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGH----------ESPDVFRNACG 98 (294)
Q Consensus 36 i~~Lv~lL~s------~-~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s----------~~~~v~~~a~~ 98 (294)
+|.++.++.. . +.....+...++..|. .|+......--+--+|+++.++-+ ++-.++..|+.
T Consensus 212 lPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl-~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 212 LPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL-DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh-cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 5666666642 2 4566667777778777 455555444444467777766532 12368888888
Q ss_pred HHHHhhcCCCChhhHHHHHhcCChHHHHHHhcc-CCCHHHHHHHHHHHHHh
Q psy15592 99 ALRNLSYGRQNDENKRAIKNAGGIPLLINLLRK-TADAEVKELVTGVLWNL 148 (294)
Q Consensus 99 aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~nL 148 (294)
.|..++.. -.....-+....+..+.+.+.+ .........++..|..|
T Consensus 291 ll~~i~~~---f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRK---FSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHH---cCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 88888741 1111111222233455555544 22334456666665555
No 267
>KOG2199|consensus
Probab=23.08 E-value=3e+02 Score=25.99 Aligned_cols=74 Identities=18% Similarity=0.166 Sum_probs=55.4
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 76 GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 76 g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
.+|..|.+-|...++.|...|+..|..++.. ....-+..+........|..++.+..++.+.+....++-+.+.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~N-Cg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVAN-CGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHh-cchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 3578888999999999999998888888752 1344567777778888888888855677877776666655554
No 268
>KOG0211|consensus
Probab=22.85 E-value=7.1e+02 Score=25.82 Aligned_cols=203 Identities=14% Similarity=0.109 Sum_probs=95.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCCh----
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQND---- 110 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~---- 110 (294)
.+..+.+-++.++-..+.+....+.+++....+.+. ..-.+|.+.+.+ .+..++...++.-++++......+
T Consensus 83 ~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~ 158 (759)
T KOG0211|consen 83 PIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERT---RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAH 158 (759)
T ss_pred cHHHHhhccCchhhhhhhhhhccccchhhhcccchh---hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHH
Confidence 345555556666666777888888887765555554 334578888877 656666666654444443200000
Q ss_pred ----------hhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccC-CC---
Q psy15592 111 ----------ENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPH-SG--- 176 (294)
Q Consensus 111 ----------~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~-s~--- 176 (294)
.+....+....++.+.......+.......-..++++++..+.....+..+|+......-+.+. ..
T Consensus 159 ~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~el 238 (759)
T KOG0211|consen 159 MLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKREL 238 (759)
T ss_pred HhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHH
Confidence 0112222233444444444443344445556666666666533222333344443332111100 00
Q ss_pred -CCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhc
Q psy15592 177 -WDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251 (294)
Q Consensus 177 -~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 251 (294)
...+..-....+.+...++.=+.+++..-+ +.... .+.++.+.++.... .+.+++.|+..+.++-
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~---~~~~~-s~v~~~~~~L~~Dd------qdsVr~~a~~~~~~l~ 304 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLE---SEIVK-SEVLPTLIQLLRDD------QDSVREAAVESLVSLL 304 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHHH---HHHHH-hhccHHHhhhhhcc------hhhHHHHHHHHHHHHH
Confidence 000000011122344444444444443322 12333 36666666666321 2367777777766654
No 269
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=22.75 E-value=4.9e+02 Score=22.30 Aligned_cols=194 Identities=12% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCc-ccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhH
Q psy15592 36 LTEVIS-FLSNPNNVIKANAAAYLQHLCYMDD-PNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENK 113 (294)
Q Consensus 36 i~~Lv~-lL~s~~~~~~~~a~~~L~nL~~~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k 113 (294)
++.|.- +-+..+++.+......|..++ .+. .+...+.+ .|..+...+..+...-+.+.+..+- ....+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~-~~~~~~~~~v~~-----~L~~L~~~~~~~~~~~~~rLl~~lw----~~~~r 71 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLA-CHKNVCVPPVLQ-----TLVSLVEQGSLELRYVALRLLTLLW----KANDR 71 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHh-ccCccchhHHHH-----HHHHHHcCCchhHHHHHHHHHHHHH----HhCch
Q ss_pred HHHHhcCChHHHHHH---------hccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhh-ccCCCCCCCCCC
Q psy15592 114 RAIKNAGGIPLLINL---------LRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHII-IPHSGWDPVSAG 183 (294)
Q Consensus 114 ~~i~~~g~i~~Lv~l---------L~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll-~~~s~~~~~~~~ 183 (294)
.- +.+..++.. ..+....+........+..++..... .-.-.++.+..++ .
T Consensus 72 ~f----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~----------- 132 (234)
T PF12530_consen 72 HF----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQ----------- 132 (234)
T ss_pred HH----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhc-----------
Q ss_pred ccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHH---------------HHHHHHHHhHhhcCCCcchHHHHHHHHH
Q psy15592 184 ETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLID---------------SLLYVVKSAIEKSNIGNKSVENCVCILR 248 (294)
Q Consensus 184 ~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~---------------~Lv~lL~~~~~~~~~~~~~~e~a~~~L~ 248 (294)
..++.+...+...|+-|+...--.-...+. .+.+ .|+.++....-+...-++.+.+++..+|
T Consensus 133 -~~~~~~~alale~l~~Lc~~~vvd~~s~w~--vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW 209 (234)
T PF12530_consen 133 -SCDEVAQALALEALAPLCEAEVVDFYSAWK--VLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLW 209 (234)
T ss_pred -cccHHHHHHHHHHHHHHHHHhhccHHHHHH--HHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHH
Q ss_pred HhccCCccccCCC
Q psy15592 249 NLSFRCQEVEDPN 261 (294)
Q Consensus 249 nLs~~~~~~~~~~ 261 (294)
+.+...+....++
T Consensus 210 ~~~~~~~~~~~~~ 222 (234)
T PF12530_consen 210 EYTSSSDVNVASQ 222 (234)
T ss_pred hhccccccchHHH
No 270
>KOG2025|consensus
Probab=22.42 E-value=8.7e+02 Score=25.07 Aligned_cols=72 Identities=15% Similarity=-0.010 Sum_probs=49.7
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc
Q psy15592 76 GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151 (294)
Q Consensus 76 g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 151 (294)
|-+..+++-..+++..|+...+..|.-++- ...-...-+-.+....+..-+.+ ..+.++.+|+-+|+.+-..
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d---~~~eidd~vfn~l~e~l~~Rl~D-rep~VRiqAv~aLsrlQ~d 156 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSD---ENAEIDDDVFNKLNEKLLIRLKD-REPNVRIQAVLALSRLQGD 156 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhc---cccccCHHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHhcC
Confidence 446777777778899999999999988883 21222222333445555555556 5788999999999998643
No 271
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.06 E-value=2.7e+02 Score=27.85 Aligned_cols=62 Identities=21% Similarity=0.171 Sum_probs=42.5
Q ss_pred CChHHHHHh-hCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHh
Q psy15592 76 GGIPPLVKL-LGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNL 148 (294)
Q Consensus 76 g~i~~Lv~l-L~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nL 148 (294)
|.+..|++. ..+.+.++++.|+.+|.-+++. + ...++..+++|.++.+..++....-+|.--
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~--D---------~~~lv~tvelLs~shN~hVR~g~AvaLGia 613 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD--D---------RDLLVGTVELLSESHNFHVRAGVAVALGIA 613 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEec--C---------cchhhHHHHHhhhccchhhhhhhHHHhhhh
Confidence 345566665 4567889999999999988872 2 245566777887766777776665555543
No 272
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=21.87 E-value=5.5e+02 Score=22.57 Aligned_cols=63 Identities=27% Similarity=0.303 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHhhcC------CC----------------ChhhHHHHHhcCChHHHHHHhcc----------CCCH
Q psy15592 88 ESPDVFRNACGALRNLSYG------RQ----------------NDENKRAIKNAGGIPLLINLLRK----------TADA 135 (294)
Q Consensus 88 ~~~~v~~~a~~aL~nLs~~------~~----------------~~~~k~~i~~~g~i~~Lv~lL~~----------~~~~ 135 (294)
+++.+...+++.|-+|++. .. -...|.++.+.+.+..++.++.. ..+.
T Consensus 55 ~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~ 134 (266)
T PF04821_consen 55 DDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDN 134 (266)
T ss_pred CchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHH
Confidence 3678888888888888861 00 01135667777777777766622 1244
Q ss_pred HHHHHHHHHHHHhcc
Q psy15592 136 EVKELVTGVLWNLSS 150 (294)
Q Consensus 136 ~~~~~a~~~L~nLs~ 150 (294)
.+.+..+-.++|+..
T Consensus 135 ~ii~lvL~LiRNlL~ 149 (266)
T PF04821_consen 135 LIIELVLTLIRNLLA 149 (266)
T ss_pred HHHHHHHHHHHHHhc
Confidence 566778888888843
No 273
>PLN03205 ATR interacting protein; Provisional
Probab=21.51 E-value=2.8e+02 Score=26.39 Aligned_cols=184 Identities=14% Similarity=0.157 Sum_probs=93.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHH----hhcCCcccHHHHHhcCChHHHHHhhC-----CCCHHHHHHHHHHHHHhhcC
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQH----LCYMDDPNKQKTRSLGGIPPLVKLLG-----HESPDVFRNACGALRNLSYG 106 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~n----L~~~~~~~k~~i~~~g~i~~Lv~lL~-----s~~~~v~~~a~~aL~nLs~~ 106 (294)
+++|..+..-++..+...+.++|.. ++ .+ +-|-.--.--.+-.|++++. +..+.++..|+..+--+...
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~-~~-~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHIC-GD-EKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHh-CC-cccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhc
Confidence 4556666666666666666665543 44 21 21111111122445555553 23345666676554444431
Q ss_pred CCChh-hHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHH---------------------hhC--
Q psy15592 107 RQNDE-NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSII---------------------DDG-- 162 (294)
Q Consensus 107 ~~~~~-~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~---------------------~~g-- 162 (294)
.+.. -|+.+...-..+.+-++|+......+++.++-.|.-|-.|+..-..+. ..|
T Consensus 403 -sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fS 481 (652)
T PLN03205 403 -TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFG 481 (652)
T ss_pred -cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHHH
Confidence 2332 356666666778888888875566788887766665544433222211 011
Q ss_pred -hHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhh-----cCcHHHHHHHHHHh
Q psy15592 163 -LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLREC-----EGLIDSLLYVVKSA 229 (294)
Q Consensus 163 -~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~-----~g~i~~Lv~lL~~~ 229 (294)
++.-|...+. .++. +..+..+.+.+.-.|.-+|+.+..+...|..+ .+.+..++++|.+.
T Consensus 482 sIlegLAeCia-c~~~------s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLmLILqvLvSe 547 (652)
T PLN03205 482 KIFEGLADCLT-SPRK------TSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLMLILHLLVAE 547 (652)
T ss_pred HHHHHHHHHHc-CCCC------ChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHHHHHHHHHHH
Confidence 1122223331 1221 23345677888888888887655444433321 34555556666443
No 274
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=21.00 E-value=9.5e+02 Score=24.99 Aligned_cols=133 Identities=11% Similarity=-0.005 Sum_probs=79.9
Q ss_pred CCCHHHHHHhhc-C-------CCHHHHHHHHHHHHHhhc--CCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy15592 33 DPNLTEVISFLS-N-------PNNVIKANAAAYLQHLCY--MDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102 (294)
Q Consensus 33 ~g~i~~Lv~lL~-s-------~~~~~~~~a~~~L~nL~~--~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~n 102 (294)
.|.++.++..|. + +++.-.+.|.+.+.++.. ..+.--.-+.+.=.++.++..+++...-++..||..+.-
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 577888888882 1 233334555566655442 112222334444455677777788888899999998888
Q ss_pred hhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhc
Q psy15592 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIII 172 (294)
Q Consensus 103 Ls~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~ 172 (294)
++. + -+....-..+.+....+|++ .+..++..|.-+|..+-.++...+. +++++++.+.++|.
T Consensus 487 ~ee---D--fkd~~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~q~h~k-~sahVp~tmekLLs 549 (970)
T COG5656 487 IEE---D--FKDNGILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNEQSHEK-FSAHVPETMEKLLS 549 (970)
T ss_pred HHH---h--cccchHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhchhhhHH-HHhhhhHHHHHHHH
Confidence 864 1 12222223455666778877 4777777777777777665544443 34556666666663
No 275
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=20.88 E-value=8e+02 Score=24.04 Aligned_cols=140 Identities=18% Similarity=0.077 Sum_probs=71.9
Q ss_pred hHHHHHhhCCC----CHHHHHHHHHHHHHhhcCCC-ChhhHHHHHhcCChHHHHHHhcc---CCCHHHHHHHHHHHHHhc
Q psy15592 78 IPPLVKLLGHE----SPDVFRNACGALRNLSYGRQ-NDENKRAIKNAGGIPLLINLLRK---TADAEVKELVTGVLWNLS 149 (294)
Q Consensus 78 i~~Lv~lL~s~----~~~v~~~a~~aL~nLs~~~~-~~~~k~~i~~~g~i~~Lv~lL~~---~~~~~~~~~a~~~L~nLs 149 (294)
+..+..+++++ .+.+...|+-++.+|..... +.......+....++.+.+.|.. ..+.+-+...+.+|+|+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 44566666653 44577777777776663000 11110011112355666665543 134444556677777765
Q ss_pred ccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHh
Q psy15592 150 SCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSA 229 (294)
Q Consensus 150 ~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~ 229 (294)
... .++.+..++. |.. .....+...|+.+|++++...+ .-..+.|..++...
T Consensus 475 ~~~----------~i~~l~~~l~---~~~------~~~~~iR~~Av~Alr~~a~~~p---------~~v~~~l~~i~~n~ 526 (574)
T smart00638 475 HPS----------SIKVLEPYLE---GAE------PLSTFIRLAAILALRNLAKRDP---------RKVQEVLLPIYLNR 526 (574)
T ss_pred Chh----------HHHHHHHhcC---CCC------CCCHHHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHcCC
Confidence 432 2344444442 111 1124577889999999885443 12234555556432
Q ss_pred HhhcCCCcchHHHHHHHHHH
Q psy15592 230 IEKSNIGNKSVENCVCILRN 249 (294)
Q Consensus 230 ~~~~~~~~~~~e~a~~~L~n 249 (294)
..+.+++..|+-+|..
T Consensus 527 ----~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 527 ----AEPPEVRMAAVLVLME 542 (574)
T ss_pred ----CCChHHHHHHHHHHHh
Confidence 3345777777766653
No 276
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.45 E-value=5.9e+02 Score=22.35 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=20.6
Q ss_pred CCCHHHHHHhhcCCCH--HHHHHHHHHHHHhhcCCcccHHHHHhc
Q psy15592 33 DPNLTEVISFLSNPNN--VIKANAAAYLQHLCYMDDPNKQKTRSL 75 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~--~~~~~a~~~L~nL~~~~~~~k~~i~~~ 75 (294)
.|-++.|-+++.+++. -+|..|..+|..++...+..|..++++
T Consensus 110 ~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~ 154 (249)
T PF06685_consen 110 DGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQY 154 (249)
T ss_pred CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3445555555544432 234444555555554444455555554
No 277
>KOG1240|consensus
Probab=20.28 E-value=2.4e+02 Score=30.60 Aligned_cols=70 Identities=21% Similarity=0.171 Sum_probs=45.4
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 76 GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 76 g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
..+|.|.+-|.++.+.|...|+++|..|..- .---|..+. ..++...-+|.. ++.=++..+++.+...+.
T Consensus 656 yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~--~ll~K~~v~--~i~~~v~PlL~h-PN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 656 YLLPLLQQGLTDGEEAVIVSALGSLSILIKL--GLLRKPAVK--DILQDVLPLLCH-PNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHh--cccchHHHH--HHHHhhhhheeC-chHHHHHHHHHHHHHHHh
Confidence 3456677777788888999999999988841 111233332 234444445555 477788888888876654
Done!