Query psy15592
Match_columns 294
No_of_seqs 149 out of 1746
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 16:32:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tt9_A Plakophilin-2; cell adh 100.0 1.9E-38 6.4E-43 273.9 19.3 219 34-255 8-232 (233)
2 3l6x_A Catenin delta-1; cateni 100.0 8.4E-33 2.9E-37 266.8 23.9 234 26-262 40-279 (584)
3 3nmw_A APC variant protein; AR 100.0 2.2E-30 7.4E-35 237.4 17.4 227 12-254 49-294 (354)
4 3nmw_A APC variant protein; AR 100.0 8E-30 2.7E-34 233.6 17.3 229 10-259 99-341 (354)
5 1xm9_A Plakophilin 1; armadill 100.0 4.9E-29 1.7E-33 236.0 22.5 223 35-262 3-229 (457)
6 3nmz_A APC variant protein; pr 100.0 3.4E-29 1.2E-33 236.3 17.2 225 14-254 167-410 (458)
7 3nmz_A APC variant protein; pr 100.0 7.8E-29 2.7E-33 233.8 16.9 226 11-257 216-455 (458)
8 4hxt_A De novo protein OR329; 99.9 4.7E-26 1.6E-30 196.5 20.2 224 10-255 17-244 (252)
9 4db8_A Armadillo-repeat protei 99.9 4.9E-26 1.7E-30 197.4 17.8 221 10-253 27-252 (252)
10 4db6_A Armadillo repeat protei 99.9 5.8E-25 2E-29 185.6 23.2 200 32-253 10-210 (210)
11 1xm9_A Plakophilin 1; armadill 99.9 3.6E-26 1.2E-30 216.3 15.7 234 10-254 17-362 (457)
12 3l6x_A Catenin delta-1; cateni 99.9 5.8E-26 2E-30 219.1 12.2 229 10-254 63-340 (584)
13 3ul1_B Importin subunit alpha- 99.9 3.4E-24 1.2E-28 205.4 19.4 222 11-254 117-389 (510)
14 3tpo_A Importin subunit alpha- 99.9 8.7E-24 3E-28 203.3 21.1 223 10-254 135-408 (529)
15 4hxt_A De novo protein OR329; 99.9 3.1E-23 1.1E-27 178.7 22.4 199 34-254 2-201 (252)
16 3tt9_A Plakophilin-2; cell adh 99.9 5.8E-25 2E-29 189.5 10.3 184 11-204 26-230 (233)
17 4db8_A Armadillo-repeat protei 99.9 8.1E-23 2.8E-27 177.0 19.7 201 32-254 10-211 (252)
18 3now_A UNC-45 protein, SD10334 99.9 1.9E-23 6.4E-28 208.0 15.8 223 10-254 510-739 (810)
19 3ul1_B Importin subunit alpha- 99.9 1.2E-22 4.2E-27 194.6 20.5 206 28-254 94-305 (510)
20 1jdh_A Beta-catenin; beta-cate 99.9 7.2E-22 2.5E-26 188.3 21.3 237 11-254 76-341 (529)
21 3now_A UNC-45 protein, SD10334 99.9 1.4E-22 4.6E-27 201.8 15.9 204 28-254 489-696 (810)
22 3tpo_A Importin subunit alpha- 99.9 6.7E-22 2.3E-26 190.1 20.2 206 28-254 113-324 (529)
23 1xqr_A HSPBP1 protein; armadil 99.9 7.9E-22 2.7E-26 176.3 18.7 220 14-251 59-286 (296)
24 4db6_A Armadillo repeat protei 99.9 5.4E-22 1.8E-26 167.3 16.3 179 10-203 27-209 (210)
25 1xqr_A HSPBP1 protein; armadil 99.9 1.8E-21 6.3E-26 173.9 20.3 197 36-254 30-240 (296)
26 4b8j_A Importin subunit alpha- 99.9 2.1E-21 7E-26 186.0 21.3 223 11-254 90-317 (528)
27 2z6h_A Catenin beta-1, beta-ca 99.9 2.3E-21 8E-26 190.4 21.1 237 11-254 73-338 (644)
28 4b8j_A Importin subunit alpha- 99.9 9.7E-21 3.3E-25 181.3 18.6 223 10-254 133-360 (528)
29 1wa5_B Importin alpha subunit; 99.9 3E-20 1E-24 178.2 21.1 221 12-254 104-330 (530)
30 2z6g_A B-catenin; FULL-length, 99.8 5E-20 1.7E-24 184.9 21.9 238 11-255 209-475 (780)
31 1wa5_B Importin alpha subunit; 99.8 5.2E-20 1.8E-24 176.5 19.0 222 11-254 147-372 (530)
32 1jdh_A Beta-catenin; beta-cate 99.8 2.1E-19 7.1E-24 171.2 20.3 204 28-254 11-217 (529)
33 2jdq_A Importin alpha-1 subuni 99.8 3.9E-19 1.3E-23 165.8 21.1 222 11-254 36-265 (450)
34 2z6h_A Catenin beta-1, beta-ca 99.8 8.2E-20 2.8E-24 179.5 17.1 222 10-254 29-255 (644)
35 2jdq_A Importin alpha-1 subuni 99.8 7E-19 2.4E-23 164.1 21.7 221 11-254 166-392 (450)
36 2z6g_A B-catenin; FULL-length, 99.8 1.3E-18 4.4E-23 174.7 15.9 222 10-254 165-391 (780)
37 3opb_A SWI5-dependent HO expre 99.7 1.6E-17 5.6E-22 163.1 11.5 205 26-253 449-684 (778)
38 3opb_A SWI5-dependent HO expre 99.7 7.5E-17 2.6E-21 158.5 12.9 224 9-252 471-728 (778)
39 4gmo_A Putative uncharacterize 99.4 3.5E-12 1.2E-16 126.1 15.1 207 33-255 33-261 (684)
40 3grl_A General vesicular trans 99.2 3.1E-10 1.1E-14 109.3 17.6 211 30-254 118-344 (651)
41 3grl_A General vesicular trans 99.2 1E-10 3.6E-15 112.5 13.7 221 21-254 48-294 (651)
42 4gmo_A Putative uncharacterize 98.9 6.4E-09 2.2E-13 102.8 13.2 171 76-254 34-216 (684)
43 3ltm_A Alpha-REP4; protein eng 98.8 3.4E-07 1.2E-11 76.3 16.8 123 78-254 83-205 (211)
44 3ltj_A Alpharep-4; protein eng 98.8 3.4E-07 1.2E-11 75.8 16.1 153 34-251 45-197 (201)
45 3ltm_A Alpha-REP4; protein eng 98.7 3.3E-07 1.1E-11 76.5 15.0 156 32-252 17-172 (211)
46 3ltj_A Alpharep-4; protein eng 98.7 5.5E-07 1.9E-11 74.5 15.1 156 30-250 10-165 (201)
47 1oyz_A Hypothetical protein YI 98.5 6.3E-06 2.2E-10 71.6 16.8 98 32-149 21-119 (280)
48 1oyz_A Hypothetical protein YI 98.4 9.2E-06 3.2E-10 70.6 16.3 65 34-104 54-119 (280)
49 2vgl_B AP-2 complex subunit be 98.1 2E-05 6.9E-10 76.3 11.1 192 35-257 122-316 (591)
50 4fdd_A Transportin-1; heat rep 98.0 9.2E-05 3.1E-09 74.4 14.1 202 34-255 174-391 (852)
51 4fdd_A Transportin-1; heat rep 97.9 4.3E-05 1.5E-09 76.9 11.4 194 34-255 256-474 (852)
52 1te4_A Conserved protein MTH18 97.9 4E-06 1.4E-10 64.7 2.4 91 33-149 11-101 (131)
53 1b3u_A Protein (protein phosph 97.9 0.00018 6.2E-09 68.4 13.9 186 36-251 166-352 (588)
54 1b3u_A Protein (protein phosph 97.9 0.00012 4.2E-09 69.5 12.6 150 33-203 202-353 (588)
55 1te4_A Conserved protein MTH18 97.8 3.1E-05 1E-09 59.7 6.0 89 35-148 43-131 (131)
56 2qk2_A LP04448P; mini spindles 97.8 8.5E-05 2.9E-09 63.2 8.8 186 37-255 18-208 (242)
57 1w63_A Adapter-related protein 97.7 0.00096 3.3E-08 64.8 16.3 186 35-253 143-343 (618)
58 3b2a_A TON_1937, putative unch 97.6 0.0012 4.1E-08 55.8 13.7 188 34-254 33-220 (265)
59 2vgl_B AP-2 complex subunit be 97.6 0.00083 2.8E-08 64.9 13.8 143 34-206 49-192 (591)
60 1w63_A Adapter-related protein 97.6 0.0042 1.4E-07 60.3 18.3 184 35-253 71-264 (618)
61 1ho8_A Vacuolar ATP synthase s 97.5 0.0019 6.5E-08 60.2 14.5 127 41-171 174-328 (480)
62 1ibr_B P95, importin beta-1 su 97.4 0.0035 1.2E-07 57.4 14.8 201 34-254 172-397 (462)
63 3dad_A FH1/FH2 domain-containi 97.3 0.019 6.5E-07 51.1 17.5 152 36-201 120-284 (339)
64 2qk2_A LP04448P; mini spindles 97.1 0.018 6.1E-07 48.6 15.3 144 35-203 57-205 (242)
65 1ibr_B P95, importin beta-1 su 97.1 0.0011 3.7E-08 60.9 8.2 193 36-255 219-440 (462)
66 2bpt_A Importin beta-1 subunit 97.0 0.015 5E-07 57.8 16.0 198 36-255 371-588 (861)
67 1qgr_A Protein (importin beta 97.0 0.01 3.6E-07 59.0 14.7 192 35-254 218-439 (876)
68 3dad_A FH1/FH2 domain-containi 97.0 0.011 3.9E-07 52.5 12.9 157 79-254 121-288 (339)
69 2qk1_A Protein STU2; STU2P, XM 97.0 0.0032 1.1E-07 54.0 9.1 197 38-256 20-224 (249)
70 3b2a_A TON_1937, putative unch 96.9 0.037 1.3E-06 46.8 14.8 157 33-226 74-233 (265)
71 1u6g_C TIP120 protein, CAND1; 96.9 0.0048 1.7E-07 64.4 11.8 193 36-255 8-207 (1230)
72 1u6g_C TIP120 protein, CAND1; 96.9 0.0073 2.5E-07 63.0 13.0 192 34-254 48-245 (1230)
73 1qgr_A Protein (importin beta 96.9 0.004 1.4E-07 62.0 10.7 201 35-255 367-596 (876)
74 2vgl_A Adaptor protein complex 96.7 0.062 2.1E-06 52.1 17.0 159 34-228 74-235 (621)
75 1ho8_A Vacuolar ATP synthase s 96.7 0.12 4.3E-06 48.1 18.1 144 80-242 171-340 (480)
76 2qk1_A Protein STU2; STU2P, XM 96.7 0.011 3.7E-07 50.6 10.4 150 36-202 62-219 (249)
77 2bpt_A Importin beta-1 subunit 96.5 0.035 1.2E-06 55.1 13.7 192 35-254 225-442 (861)
78 3c2g_A SYS-1 protein; beta-cat 96.3 0.052 1.8E-06 48.6 11.9 134 100-249 266-400 (619)
79 3c2g_A SYS-1 protein; beta-cat 96.1 0.07 2.4E-06 47.8 12.0 114 58-175 266-380 (619)
80 3tjz_B Coatomer subunit gamma; 95.9 0.18 6.1E-06 45.4 14.0 192 36-255 106-319 (355)
81 2iw3_A Elongation factor 3A; a 95.4 0.11 3.9E-06 52.8 11.9 167 33-226 53-222 (986)
82 2vgl_A Adaptor protein complex 95.2 0.27 9.2E-06 47.6 13.7 104 34-150 329-433 (621)
83 2db0_A 253AA long hypothetical 94.8 0.41 1.4E-05 39.1 11.1 106 40-158 113-219 (253)
84 4ady_A RPN2, 26S proteasome re 94.5 1.6 5.6E-05 44.1 17.2 178 36-255 474-679 (963)
85 2db0_A 253AA long hypothetical 94.0 2.1 7.2E-05 35.0 18.5 181 32-254 30-212 (253)
86 1wa5_C Importin alpha RE-expor 92.5 4.2 0.00014 41.1 16.8 194 40-254 461-672 (960)
87 3ebb_A Phospholipase A2-activa 92.5 1.2 4E-05 39.1 11.1 121 46-171 160-285 (304)
88 4ady_A RPN2, 26S proteasome re 92.4 4.8 0.00016 40.8 16.6 98 78-204 579-677 (963)
89 2fv2_A RCD1 required for cell 91.5 4.7 0.00016 34.3 13.1 152 52-215 74-235 (268)
90 2iw3_A Elongation factor 3A; a 90.3 2.3 7.9E-05 43.3 11.9 187 34-255 95-283 (986)
91 2of3_A ZYG-9; multifunctional 88.9 1.1 3.9E-05 38.4 7.4 99 35-148 133-234 (266)
92 3tjz_B Coatomer subunit gamma; 88.7 13 0.00044 33.2 16.8 136 38-206 72-208 (355)
93 2fv2_A RCD1 required for cell 87.9 2.6 8.9E-05 35.9 8.8 135 23-160 86-234 (268)
94 3eg5_B Protein diaphanous homo 87.3 9.3 0.00032 34.4 12.8 135 33-171 108-274 (383)
95 3ebb_A Phospholipase A2-activa 87.3 14 0.00048 32.1 14.7 116 88-220 160-279 (304)
96 2f31_A Diaphanous protein homo 86.9 5.9 0.0002 33.0 10.6 135 33-171 42-208 (233)
97 2x19_B Importin-13; nuclear tr 85.8 5 0.00017 40.3 11.2 107 35-150 487-599 (963)
98 2f31_A Diaphanous protein homo 84.4 15 0.0005 30.5 11.8 125 17-141 79-219 (233)
99 2x1g_F Cadmus; transport prote 83.2 4.2 0.00014 41.0 9.3 107 35-151 502-616 (971)
100 2bnx_A Diaphanous protein homo 83.2 16 0.00053 33.0 12.2 135 33-171 46-212 (386)
101 3eg5_B Protein diaphanous homo 83.1 20 0.00067 32.3 12.8 126 17-142 145-286 (383)
102 2x19_B Importin-13; nuclear tr 81.1 34 0.0012 34.1 15.1 160 44-229 459-624 (963)
103 4ffb_C Protein STU2; tubulin f 80.3 7.7 0.00026 32.8 8.8 106 35-149 103-211 (278)
104 3oc3_A Helicase MOT1, MOT1; re 79.9 44 0.0015 32.1 14.7 182 35-255 175-368 (800)
105 1wa5_C Importin alpha RE-expor 79.8 9.8 0.00034 38.4 10.6 100 45-151 416-526 (960)
106 2x1g_F Cadmus; transport prote 79.7 50 0.0017 33.0 15.8 135 88-253 476-616 (971)
107 4ffb_C Protein STU2; tubulin f 78.6 25 0.00086 29.5 11.5 106 35-149 56-167 (278)
108 2bnx_A Diaphanous protein homo 73.7 47 0.0016 29.7 12.4 126 17-142 83-224 (386)
109 3u0r_A Apoptosis inhibitor 5; 70.0 39 0.0013 31.5 10.8 77 45-136 39-115 (507)
110 1lrv_A LRV, leucine-rich repea 68.2 3 0.0001 35.3 2.8 89 79-169 125-225 (244)
111 4hat_C Exportin-1; heat repeat 65.7 18 0.00062 37.0 8.6 117 36-160 497-631 (1023)
112 1x5b_A Signal transducing adap 65.5 15 0.0005 28.9 6.2 72 77-149 53-124 (163)
113 3u0r_A Apoptosis inhibitor 5; 65.1 38 0.0013 31.5 9.7 65 33-104 64-128 (507)
114 4hat_C Exportin-1; heat repeat 61.4 12 0.0004 38.4 6.2 98 46-150 465-569 (1023)
115 3zyq_A Hepatocyte growth facto 60.7 12 0.0004 31.1 5.1 71 78-149 47-117 (226)
116 2of3_A ZYG-9; multifunctional 56.5 21 0.00072 30.4 6.1 65 35-104 168-235 (266)
117 3g2s_A C-terminal fragment of 55.8 29 0.00099 26.7 6.3 73 77-150 49-126 (149)
118 3ldz_A STAM-1, signal transduc 55.8 22 0.00077 27.0 5.6 71 77-149 43-113 (140)
119 1lrv_A LRV, leucine-rich repea 53.4 12 0.00042 31.4 4.0 108 36-145 100-218 (244)
120 3ibv_A Exportin-T; karyopherin 52.5 2E+02 0.0068 29.1 14.5 81 36-129 492-583 (980)
121 1dvp_A HRS, hepatocyte growth 52.3 19 0.00066 29.5 5.0 69 78-147 44-112 (220)
122 3m1i_C Exportin-1; heat repeat 51.8 38 0.0013 34.4 8.2 56 48-105 514-569 (1049)
123 3gs3_A Symplekin, LD45768P; he 51.4 65 0.0022 27.1 8.3 65 33-102 52-116 (257)
124 1mhq_A ADP-ribosylation factor 49.4 33 0.0011 26.3 5.7 73 77-150 39-116 (148)
125 3m1i_C Exportin-1; heat repeat 48.5 2.2E+02 0.0077 28.7 13.3 99 46-151 465-570 (1049)
126 3o2t_A Symplekin; heat repeat, 48.4 69 0.0024 28.8 8.4 107 33-147 62-180 (386)
127 1lsh_A Lipovitellin (LV-1N, LV 47.7 1.3E+02 0.0044 30.8 11.3 115 122-254 438-578 (1056)
128 1juq_A ADP-ribosylation factor 46.8 34 0.0012 26.9 5.5 72 78-150 52-128 (171)
129 1upk_A MO25 protein; transfera 46.8 1.5E+02 0.0052 26.1 10.4 117 32-152 162-285 (341)
130 1mhq_A ADP-ribosylation factor 46.6 34 0.0012 26.2 5.3 70 35-104 39-115 (148)
131 3qml_C Protein SLS1, nucleotid 44.6 1.5E+02 0.0051 25.8 9.5 127 13-148 46-187 (315)
132 1x5b_A Signal transducing adap 44.3 31 0.0011 26.9 4.8 70 35-104 53-124 (163)
133 3ldz_A STAM-1, signal transduc 43.0 32 0.0011 26.0 4.6 70 35-104 43-113 (140)
134 3oc3_A Helicase MOT1, MOT1; re 42.3 23 0.00078 34.1 4.2 85 49-149 243-327 (800)
135 3gae_A Protein DOA1; UFD3, CDC 39.3 19 0.00066 30.3 3.1 101 44-150 100-217 (253)
136 1juq_A ADP-ribosylation factor 39.1 38 0.0013 26.6 4.6 70 35-104 51-127 (171)
137 3g2s_A C-terminal fragment of 38.6 67 0.0023 24.6 5.9 70 35-104 49-125 (149)
138 3ibv_A Exportin-T; karyopherin 37.9 1.2E+02 0.004 30.8 9.1 71 44-118 203-273 (980)
139 3vld_A DNA mismatch repair pro 36.0 1.3E+02 0.0046 27.8 8.3 107 30-146 112-221 (500)
140 1lsh_A Lipovitellin (LV-1N, LV 31.0 1.8E+02 0.0063 29.6 9.3 60 35-105 437-507 (1056)
141 1upk_A MO25 protein; transfera 30.5 2.8E+02 0.0095 24.4 18.9 185 47-250 136-333 (341)
142 1elk_A Target of MYB1; superhe 29.7 1.1E+02 0.0039 23.4 5.9 71 78-149 55-129 (157)
143 3pst_A Protein DOA1; protein d 27.4 2.8E+02 0.0097 25.1 8.9 102 44-151 272-390 (425)
144 3zyq_A Hepatocyte growth facto 25.3 66 0.0022 26.4 4.0 71 34-104 45-117 (226)
145 3gjx_A Exportin-1; transport, 24.4 5.9E+02 0.02 26.1 12.2 109 133-257 491-600 (1073)
146 3l3f_X Protein DOA1, DOA1/UFD3 23.9 3E+02 0.01 24.4 8.2 101 44-150 209-326 (362)
147 3l9t_A Putative uncharacterize 21.6 2.1E+02 0.0071 23.8 6.3 78 36-118 141-218 (240)
148 3gae_A Protein DOA1; UFD3, CDC 21.4 1.7E+02 0.0059 24.3 6.0 145 93-254 71-219 (253)
No 1
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=273.90 Aligned_cols=219 Identities=39% Similarity=0.673 Sum_probs=194.7
Q ss_pred CCHHHHHHhhcCCCH--HHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy15592 34 PNLTEVISFLSNPNN--VIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~--~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
-.++.||++|+++++ .++..|+++|.++++.++++|..|++.||||+|+++|++++++++..|+++|+||+++ +++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~--~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE--DND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--CHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--CHH
Confidence 458999999999988 8899999999999988889999999999999999999999999999999999999985 799
Q ss_pred hHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhh-ccCCCCCCC---CCCccch
Q psy15592 112 NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHII-IPHSGWDPV---SAGETCW 187 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll-~~~s~~~~~---~~~~~~~ 187 (294)
+|..|++.|+||+|+++|+++.+.+++++++++|||||..+++|..|++.| ++.|+.++ .|++|+... ......+
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~-i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEA-LLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHH-HHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhcc-HHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999999864689999999999999999999999999865 55555544 466676421 1112346
Q ss_pred hhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 188 STIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 188 ~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
..++++|++||+||++.++++|+.|++++|+|+.|+++++...++++++.+.+|+|+|+|+|||||.+
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~~ 232 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQLE 232 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhhc
Confidence 78999999999999998888999999988999999999999988889999999999999999999984
No 2
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=8.4e-33 Score=266.82 Aligned_cols=234 Identities=47% Similarity=0.844 Sum_probs=203.9
Q ss_pred cccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15592 26 NSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSY 105 (294)
Q Consensus 26 ~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~ 105 (294)
.+..-+..+.|+.||++|++++++++..|+++|.++++.++++|..|++.|+||+||++|++++++++..|+++|+||+.
T Consensus 40 ~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 40 PPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS
T ss_pred CCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 45778899999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhh-ccCCCCCCCC---
Q psy15592 106 GRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHII-IPHSGWDPVS--- 181 (294)
Q Consensus 106 ~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll-~~~s~~~~~~--- 181 (294)
+ .++++|..|+++|+|++|+++|++..+.++++.++++|||||.++++|..|++.| ++.|+.++ .+++++....
T Consensus 120 ~-~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~a-lp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 120 G-RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA-LHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp S-SCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHT-HHHHHHHTHHHHHCCC------
T ss_pred c-CCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhcc-HHHHHHHHhccccccccccccc
Confidence 3 2589999999999999999999985688999999999999999999999999765 65666554 4555654321
Q ss_pred --CCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCccccC
Q psy15592 182 --AGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQEVED 259 (294)
Q Consensus 182 --~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~ 259 (294)
..+..+..++++|++||+||+..++++|+.|++++|+++.|++++++..+.++.+.+.+|+|+++|+|||++. +.+.
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~-~~e~ 276 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQV-HREI 276 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTH-HHHS
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccc-cccc
Confidence 1234467899999999999999998889999998899999999999887667778899999999999999998 5676
Q ss_pred CCC
Q psy15592 260 PNY 262 (294)
Q Consensus 260 ~~~ 262 (294)
|+.
T Consensus 277 ~~~ 279 (584)
T 3l6x_A 277 PQA 279 (584)
T ss_dssp TTC
T ss_pred cch
Confidence 654
No 3
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.2e-30 Score=237.41 Aligned_cols=227 Identities=26% Similarity=0.290 Sum_probs=194.4
Q ss_pred hHHHhhhcccc--ccccccccccCCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCC-
Q psy15592 12 QEEFYSPSLNK--KCRNSSLRWRDPNLTEVISFLSN-----------PNNVIKANAAAYLQHLCYMDDPNKQKTRSLGG- 77 (294)
Q Consensus 12 q~~al~~l~~l--~~~~~~~i~~~g~i~~Lv~lL~s-----------~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~- 77 (294)
+..|+++|.|+ ++++|..+++.|++++|+.+|.+ .+++++..|+++|.|+++.++++|..+...+|
T Consensus 49 ~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 128 (354)
T 3nmw_A 49 ICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128 (354)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCc
Confidence 44677888888 68999999999999999999952 24789999999999999887779988877666
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc-cchhhH
Q psy15592 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKK 156 (294)
Q Consensus 78 i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~r~ 156 (294)
||+|+.+|++++++++..|+++|+||+.+ .++.+|..+++.|+|++|+++|.++.+.++++.++++|||||. ++++|.
T Consensus 129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~ 207 (354)
T 3nmw_A 129 MRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207 (354)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhcc-CCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH
Confidence 99999999999999999999999999972 2578999999999999999986554588999999999999999 778999
Q ss_pred HHH-hhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhc---cCHHHHHHHHhhcCcHHHHHHHHHHhHhh
Q psy15592 157 SII-DDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS---AGEYARKKLRECEGLIDSLLYVVKSAIEK 232 (294)
Q Consensus 157 ~i~-~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~---~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~ 232 (294)
.|. ..|+++.|+.++.. +.+. .+..++++++++|+||+. .++++|+.+.+ .|+++.|+++|.+.
T Consensus 208 ~i~~~~Gai~~Lv~lL~~--~~~~------~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~~~--- 275 (354)
T 3nmw_A 208 DICAVDGALAFLVGTLTY--RSQT------NTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSH--- 275 (354)
T ss_dssp HHHHSTTHHHHHHHHTTC--CCSS------SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTTCS---
T ss_pred HHHHhcCcHHHHHHHhcc--CCCc------ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHcCC---
Confidence 998 68999999999942 1110 112489999999999997 57789999999 69999999999643
Q ss_pred cCCCcchHHHHHHHHHHhccCC
Q psy15592 233 SNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 233 ~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
+.+++++|+++|+||+.+.
T Consensus 276 ---~~~v~~~A~~aL~nLa~~~ 294 (354)
T 3nmw_A 276 ---SLTIVSNACGTLWNLSARN 294 (354)
T ss_dssp ---CHHHHHHHHHHHHHHTSSC
T ss_pred ---ChHHHHHHHHHHHHHhCCC
Confidence 4589999999999999765
No 4
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=8e-30 Score=233.63 Aligned_cols=229 Identities=21% Similarity=0.220 Sum_probs=197.2
Q ss_pred chhHHHhhhcccc---ccccccccccCCC-HHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CcccHHHHHhcCChHHHHHh
Q psy15592 10 GSQEEFYSPSLNK---KCRNSSLRWRDPN-LTEVISFLSNPNNVIKANAAAYLQHLCYM-DDPNKQKTRSLGGIPPLVKL 84 (294)
Q Consensus 10 ~~q~~al~~l~~l---~~~~~~~i~~~g~-i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~-~~~~k~~i~~~g~i~~Lv~l 84 (294)
..|++|.++|.|+ ++.+|..+...++ |+.||++|+++++++++.|+++|+||++. ++++|..|++.|+||+|+++
T Consensus 99 ~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~l 178 (354)
T 3nmw_A 99 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC 178 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHH
Confidence 3588899999888 3457777755555 99999999999999999999999999974 56899999999999999997
Q ss_pred -hCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHH-hcCChHHHHHHhccCCCH---HHHHHHHHHHHHhcc----cchhh
Q psy15592 85 -LGHESPDVFRNACGALRNLSYGRQNDENKRAIK-NAGGIPLLINLLRKTADA---EVKELVTGVLWNLSS----CEDLK 155 (294)
Q Consensus 85 -L~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~---~~~~~a~~~L~nLs~----~~~~r 155 (294)
++++++++++.|+++|+||+.+ ++++|..++ ..|+++.|+++|.+..+. ++++.++++|+||+. ++++|
T Consensus 179 L~~~~~~~~~~~A~~aL~nLs~~--~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 179 ALEVKKESTLKSVLSALWNLSAH--CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcc--ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 5678899999999999999974 678899998 799999999999874333 689999999999996 78999
Q ss_pred HHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCC
Q psy15592 156 KSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNI 235 (294)
Q Consensus 156 ~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~ 235 (294)
..+++.|+++.|+.+|.. + +..++++|+++|+||+..++++++.+.+ .|+++.|+.++++.
T Consensus 257 ~~i~~~g~i~~Lv~lL~~--~----------~~~v~~~A~~aL~nLa~~~~~~~~~i~~-~G~i~~Lv~LL~s~------ 317 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKS--H----------SLTIVSNACGTLWNLSARNPKDQEALWD-MGAVSMLKNLIHSK------ 317 (354)
T ss_dssp HHHHTTTHHHHHHHHTTC--S----------CHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTHHHHHHTTTTCS------
T ss_pred HHHHHcCCHHHHHHHHcC--C----------ChHHHHHHHHHHHHHhCCCHHHHHHHHH-CCCHHHHHHHHhCC------
Confidence 999999999999999941 1 2458999999999999878889999999 69999999999543
Q ss_pred CcchHHHHHHHHHHhccCCccccC
Q psy15592 236 GNKSVENCVCILRNLSFRCQEVED 259 (294)
Q Consensus 236 ~~~~~e~a~~~L~nLs~~~~~~~~ 259 (294)
++++++.|+++|+||+....+.+.
T Consensus 318 ~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 318 HKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp SHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHh
Confidence 458999999999999988754433
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=4.9e-29 Score=236.02 Aligned_cols=223 Identities=39% Similarity=0.648 Sum_probs=192.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
.++.||++|++++++++..|+++|+++++.+++++..+++.|+||+|+++|++++++++..|+++|+||+.+ ++++|.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR--STTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHH
Confidence 589999999999999999999999999987778898999999999999999999999999999999999984 699999
Q ss_pred HHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhcc-CCCCCC---CCCCccchhhH
Q psy15592 115 AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIP-HSGWDP---VSAGETCWSTI 190 (294)
Q Consensus 115 ~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~-~s~~~~---~~~~~~~~~~v 190 (294)
.+++.|++|+|+++|+.+.++++++.++++|+||+.++++|..+++ |+++.|+.++.. ++++.. ...++..+..+
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 9999999999999998436899999999999999999999999999 999999999831 112211 01112345789
Q ss_pred HHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCccccCCCC
Q psy15592 191 FRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQEVEDPNY 262 (294)
Q Consensus 191 ~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~ 262 (294)
+++|+++|+||+.. +++|+.|++.+|+++.|+.++.++..+++.+.+++++|+++|+||+++. +.+.+..
T Consensus 160 ~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~-~~~~~~~ 229 (457)
T 1xm9_A 160 FFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRL-DAEVPTR 229 (457)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTH-HHHSCCH
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccch-hccCcch
Confidence 99999999999987 6799999984499999999999877666777899999999999999987 4555543
No 6
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=3.4e-29 Score=236.26 Aligned_cols=225 Identities=26% Similarity=0.303 Sum_probs=193.3
Q ss_pred HHhhhcccc--ccccccccccCCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCC-hH
Q psy15592 14 EFYSPSLNK--KCRNSSLRWRDPNLTEVISFLSN-----------PNNVIKANAAAYLQHLCYMDDPNKQKTRSLGG-IP 79 (294)
Q Consensus 14 ~al~~l~~l--~~~~~~~i~~~g~i~~Lv~lL~s-----------~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~-i~ 79 (294)
.|+++|.|+ ++++|..+.+.|++++|+.+|.. ++++++..|+++|.|+++.++++|..+...+| ||
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 246 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence 678888888 67899999999999999999952 35678999999999999887778888876655 99
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc-cchhhHHH
Q psy15592 80 PLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSI 158 (294)
Q Consensus 80 ~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~r~~i 158 (294)
+|+.+|++++++++..|+++|+||+.+ .++.+|..+++.|++++|+++|....+..+++.++++||||+. ++++|..|
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 999999999999999999999999973 2578999999999999999986554588999999999999999 77999999
Q ss_pred H-hhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhc---cCHHHHHHHHhhcCcHHHHHHHHHHhHhhcC
Q psy15592 159 I-DDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS---AGEYARKKLRECEGLIDSLLYVVKSAIEKSN 234 (294)
Q Consensus 159 ~-~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~---~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~ 234 (294)
. ..|+++.|+.++.. +.+ ..+..++++++++|+||+. .++++++.+.+ .|+++.|+.+|.++
T Consensus 326 ~~~~Gal~~Lv~LL~~--~~~------~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~----- 391 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTY--RSQ------TNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSH----- 391 (458)
T ss_dssp HHSTTHHHHHHHHTTC--CCS------SSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCS-----
T ss_pred HHhcCcHHHHHHHhcC--CCC------cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHcCC-----
Confidence 8 78999999999942 111 0112489999999999997 67789999999 69999999999543
Q ss_pred CCcchHHHHHHHHHHhccCC
Q psy15592 235 IGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 235 ~~~~~~e~a~~~L~nLs~~~ 254 (294)
+.+++++|+++|+||+.+.
T Consensus 392 -~~~v~~~A~~aL~nLa~~~ 410 (458)
T 3nmz_A 392 -SLTIVSNACGTLWNLSARN 410 (458)
T ss_dssp -CHHHHHHHHHHHHHHHSSC
T ss_pred -ChHHHHHHHHHHHHHHcCC
Confidence 3579999999999999764
No 7
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=7.8e-29 Score=233.82 Aligned_cols=226 Identities=21% Similarity=0.223 Sum_probs=194.9
Q ss_pred hhHHHhhhcccc---ccccccccccC-CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CcccHHHHHhcCChHHHHHh-
Q psy15592 11 SQEEFYSPSLNK---KCRNSSLRWRD-PNLTEVISFLSNPNNVIKANAAAYLQHLCYM-DDPNKQKTRSLGGIPPLVKL- 84 (294)
Q Consensus 11 ~q~~al~~l~~l---~~~~~~~i~~~-g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~-~~~~k~~i~~~g~i~~Lv~l- 84 (294)
.|++|.++|.|+ ++.+|..+... |.|+.|+++|++++++++..|+++|+||++. ++++|..|++.||||+|+++
T Consensus 216 l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lL 295 (458)
T 3nmz_A 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 295 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHH
Confidence 588899999988 34577666555 4599999999999999999999999999974 57899999999999999997
Q ss_pred hCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHH-hcCChHHHHHHhccCCCH---HHHHHHHHHHHHhcc----cchhhH
Q psy15592 85 LGHESPDVFRNACGALRNLSYGRQNDENKRAIK-NAGGIPLLINLLRKTADA---EVKELVTGVLWNLSS----CEDLKK 156 (294)
Q Consensus 85 L~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~---~~~~~a~~~L~nLs~----~~~~r~ 156 (294)
+.++++.++..|+++|+||+.+ ++++|..++ ..|+++.|+++|....+. ++++.++++|+||+. +++++.
T Consensus 296 l~s~~~~v~~~A~~aL~nLs~~--~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~ 373 (458)
T 3nmz_A 296 LEVKKESTLKSVLSALWNLSAH--CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 373 (458)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHH--CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHccC--CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 4667889999999999999974 678899998 899999999999874333 589999999999985 789999
Q ss_pred HHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCC
Q psy15592 157 SIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIG 236 (294)
Q Consensus 157 ~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~ 236 (294)
.+++.|+++.|+.+|.. + +..++++|+++|+||+..+++++..+.+ .|+++.|+.++.+. +
T Consensus 374 ~i~~~G~i~~Lv~LL~~--~----------~~~v~~~A~~aL~nLa~~~~~~~~~i~~-~G~I~~Lv~LL~s~------~ 434 (458)
T 3nmz_A 374 ILRENNCLQTLLQHLKS--H----------SLTIVSNACGTLWNLSARNPKDQEALWD-MGAVSMLKNLIHSK------H 434 (458)
T ss_dssp HHHHTTHHHHHHHHSSC--S----------CHHHHHHHHHHHHHHHSSCHHHHHHHHH-HTHHHHHHTTTTCS------S
T ss_pred HHHHcccHHHHHHHHcC--C----------ChHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhCC------C
Confidence 99999999999999941 1 2458999999999999888889999999 69999999999533 4
Q ss_pred cchHHHHHHHHHHhccCCccc
Q psy15592 237 NKSVENCVCILRNLSFRCQEV 257 (294)
Q Consensus 237 ~~~~e~a~~~L~nLs~~~~~~ 257 (294)
.++++.|+++|+||+.+..++
T Consensus 435 ~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 435 KMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp HHHHHHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHHHHHHHcCCHhh
Confidence 689999999999999887433
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=4.7e-26 Score=196.52 Aligned_cols=224 Identities=23% Similarity=0.290 Sum_probs=199.3
Q ss_pred chhHHHhhhcccc---ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC
Q psy15592 10 GSQEEFYSPSLNK---KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG 86 (294)
Q Consensus 10 ~~q~~al~~l~~l---~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~ 86 (294)
..|..++.+|.++ .++++..+.+.|+++.|+++|++++++++..|+++|.+++..+++++..+.+.|+++.|+.+|+
T Consensus 17 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~ 96 (252)
T 4hxt_A 17 ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 96 (252)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc
Confidence 3567777777777 3457888889999999999999999999999999999999877899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHH
Q psy15592 87 HESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQV 165 (294)
Q Consensus 87 s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~ 165 (294)
+++++++..|+++|++|+.+ ++.++..+.+.|+++.|+++|++ .++.++..++++|+||+.. ++.+..+.+.|+++
T Consensus 97 ~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 173 (252)
T 4hxt_A 97 STDSEVQKEAARALANIASG--PDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVE 173 (252)
T ss_dssp CSSHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHH
Confidence 99999999999999999963 88999999999999999999988 5899999999999999985 46668888999999
Q ss_pred HHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHH
Q psy15592 166 VVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVC 245 (294)
Q Consensus 166 ~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~ 245 (294)
.+..++.. .+..+...++++|.||+..++..++.+.+ .|+++.|++++. +.++++++.|+.
T Consensus 174 ~L~~ll~~------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~------~~~~~v~~~a~~ 234 (252)
T 4hxt_A 174 VLVKLLTS------------TDSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLT------STDSEVQKEAQR 234 (252)
T ss_dssp HHHHHTTC------------SCHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGG------CSCHHHHHHHHH
T ss_pred HHHHHHCC------------CCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHC------CCcHHHHHHHHH
Confidence 99999941 12568999999999999988888888988 799999999994 335689999999
Q ss_pred HHHHhccCCc
Q psy15592 246 ILRNLSFRCQ 255 (294)
Q Consensus 246 ~L~nLs~~~~ 255 (294)
+|+||+....
T Consensus 235 ~L~~l~~~~~ 244 (252)
T 4hxt_A 235 ALENIKSGGW 244 (252)
T ss_dssp HHHHHHHTCB
T ss_pred HHHHHHcCCC
Confidence 9999998885
No 9
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=4.9e-26 Score=197.38 Aligned_cols=221 Identities=20% Similarity=0.259 Sum_probs=194.2
Q ss_pred chhHHHhhhcccc---ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC
Q psy15592 10 GSQEEFYSPSLNK---KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG 86 (294)
Q Consensus 10 ~~q~~al~~l~~l---~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~ 86 (294)
..|..+++.|.++ .++++..+.+.|+++.|+++|++++++++..|+++|.+++..+++++..+.+.|+++.|+.+|+
T Consensus 27 ~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~ 106 (252)
T 4db8_A 27 QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106 (252)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc
Confidence 4677777777554 4567778889999999999999999999999999999999878899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCChhhH-HHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChH
Q psy15592 87 HESPDVFRNACGALRNLSYGRQNDENK-RAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQ 164 (294)
Q Consensus 87 s~~~~v~~~a~~aL~nLs~~~~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i 164 (294)
+++++++..|+++|+||+. ++.++ ..+.+.|+++.|+++|.+ .+..++..++++|+||+.. ++.+..+.+.|++
T Consensus 107 ~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 182 (252)
T 4db8_A 107 SPNEQILQEALWALSNIAS---GGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGAL 182 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTT---SCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHhhc---CCchHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCH
Confidence 9999999999999999997 55666 889999999999999988 5999999999999999985 4777888899999
Q ss_pred HHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHH
Q psy15592 165 VVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCV 244 (294)
Q Consensus 165 ~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~ 244 (294)
+.++.++.. .+..+.+.++++|.||+..+++.+..+.+ .|+++.|+.++.+ .++++++.|+
T Consensus 183 ~~L~~ll~~------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~------~~~~v~~~A~ 243 (252)
T 4db8_A 183 PALVQLLSS------------PNEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSH------ENEKIQKEAQ 243 (252)
T ss_dssp HHHHHGGGC------------SSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTTC------SSSHHHHTHH
T ss_pred HHHHHHHCC------------CCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhCC------CCHHHHHHHH
Confidence 999999941 12568999999999999888888889988 6999999999943 3569999999
Q ss_pred HHHHHhccC
Q psy15592 245 CILRNLSFR 253 (294)
Q Consensus 245 ~~L~nLs~~ 253 (294)
.+|.||+.+
T Consensus 244 ~~L~~l~~~ 252 (252)
T 4db8_A 244 EALEKLQSH 252 (252)
T ss_dssp HHHHTTC--
T ss_pred HHHHHHhcC
Confidence 999999853
No 10
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=5.8e-25 Score=185.62 Aligned_cols=200 Identities=21% Similarity=0.326 Sum_probs=178.6
Q ss_pred cCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy15592 32 RDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 32 ~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
..|..+.|+.+|++++++++..|+++|.+++..+++.+..+.+.|+++.|+.+|++++++++..|+++|+||+.+ ++.
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~ 87 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNE 87 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CcH
Confidence 568899999999999999999999999999987889999999999999999999999999999999999999974 888
Q ss_pred hHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhH
Q psy15592 112 NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTI 190 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v 190 (294)
++..+++.|+++.|+.+|++ .++.+++.++++|+||+.. ++.+..+++.|+++.++.++.. .+..+
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------------~~~~v 154 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS------------PNEQI 154 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC------------SCHHH
T ss_pred HHHHHHHCCCHHHHHHHHcC-CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC------------CCHHH
Confidence 99999999999999999988 4899999999999999964 5677888999999999999941 12569
Q ss_pred HHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccC
Q psy15592 191 FRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFR 253 (294)
Q Consensus 191 ~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~ 253 (294)
++.++++|.||+..+++.+..+.+ .|+++.|+.++. +.++++++.|+.+|.+|+.+
T Consensus 155 ~~~a~~aL~~l~~~~~~~~~~~~~-~g~i~~L~~ll~------~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 155 LQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQS------HENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHGGG------CSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHh------CCCHHHHHHHHHHHHHHhcC
Confidence 999999999999988889999988 699999999994 34568999999999999853
No 11
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.94 E-value=3.6e-26 Score=216.34 Aligned_cols=234 Identities=22% Similarity=0.237 Sum_probs=189.9
Q ss_pred chhHHHhhhcccc---ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC
Q psy15592 10 GSQEEFYSPSLNK---KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG 86 (294)
Q Consensus 10 ~~q~~al~~l~~l---~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~ 86 (294)
..|+.|+++|.++ ++.++..+.+.|+++.||++|++++++++..|+++|+|++..++++|..|++.||||+|+++|+
T Consensus 17 ~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~ 96 (457)
T 1xm9_A 17 KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLR 96 (457)
T ss_dssp HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Confidence 5688888888876 3455768889999999999999999999999999999999877999999999999999999999
Q ss_pred -CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhc--------cC-------CCHHHHHHHHHHHHHhcc
Q psy15592 87 -HESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLR--------KT-------ADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 87 -s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~--------~~-------~~~~~~~~a~~~L~nLs~ 150 (294)
+++++++..|+++|+||+. ++++|..+++ |++++|+++|. +. .+..+++.++++|+||+.
T Consensus 97 ~~~~~~~~~~a~~aL~nLa~---~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~ 172 (457)
T 1xm9_A 97 RTGNAEIQKQLTGLLWNLSS---TDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS 172 (457)
T ss_dssp TCCCHHHHHHHHHHHHHHHT---SSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHHHHHhc---CHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHcc
Confidence 8899999999999999998 5789999999 99999999993 21 256777899999999999
Q ss_pred cchhhHHHHhh-ChHHHHHHhhccCC--C-CCCCC---------------------------------------------
Q psy15592 151 CEDLKKSIIDD-GLQVVVNHIIIPHS--G-WDPVS--------------------------------------------- 181 (294)
Q Consensus 151 ~~~~r~~i~~~-g~i~~L~~ll~~~s--~-~~~~~--------------------------------------------- 181 (294)
++++|..+++. |+++.|+.++.... + .+.+.
T Consensus 173 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (457)
T 1xm9_A 173 ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSN 252 (457)
T ss_dssp SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---------------
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhc
Confidence 99999999997 99998888885200 0 00000
Q ss_pred --------------------C-C------------------ccchhhHHHhHhHHHHhhhccCHH----H-HHHHHhhcC
Q psy15592 182 --------------------A-G------------------ETCWSTIFRNTSGVLRNASSAGEY----A-RKKLRECEG 217 (294)
Q Consensus 182 --------------------~-~------------------~~~~~~v~~~a~~~L~nLa~~~~~----~-r~~~~~~~g 217 (294)
. + +.....+++.|+|+|+||+..+.. . +..+.+ .|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~-~~ 331 (457)
T 1xm9_A 253 KSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK-EK 331 (457)
T ss_dssp -------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTT-SC
T ss_pred cchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHH-cC
Confidence 0 0 011246778899999999975422 2 334445 69
Q ss_pred cHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 218 LIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 218 ~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
++|.|+++|.+ .+++++..|+++|+||+...
T Consensus 332 ~l~~Lv~LL~~------~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 332 GLPQIARLLQS------GNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp CHHHHHHHTTC------SCHHHHHHHHHHHHHHHTSG
T ss_pred CchHHHHHHhC------CCHhHHHHHHHHHHHHhcCH
Confidence 99999999953 34689999999999998754
No 12
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.93 E-value=5.8e-26 Score=219.14 Aligned_cols=229 Identities=20% Similarity=0.227 Sum_probs=184.0
Q ss_pred chhHHHhhhcccc---ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CcccHHHHHhcCChHHHHHhh
Q psy15592 10 GSQEEFYSPSLNK---KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYM-DDPNKQKTRSLGGIPPLVKLL 85 (294)
Q Consensus 10 ~~q~~al~~l~~l---~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~-~~~~k~~i~~~g~i~~Lv~lL 85 (294)
..|++|.++|.++ ++++|..+++.|+|++||++|+++++++++.|+++|+||++. ++++|..|++.||||+|+.+|
T Consensus 63 ~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL 142 (584)
T 3l6x_A 63 AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLL 142 (584)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHH
Confidence 4577888888776 578899999999999999999999999999999999999974 589999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhc-----------------cCCCHHHHHHHHHHHHH
Q psy15592 86 GH-ESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLR-----------------KTADAEVKELVTGVLWN 147 (294)
Q Consensus 86 ~s-~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~-----------------~~~~~~~~~~a~~~L~n 147 (294)
++ .+.+++..++++|+||+. ++.+|..|++ +++++|++++. +..+..++++++++|+|
T Consensus 143 ~s~~~~~~~e~aa~aL~nLS~---~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~N 218 (584)
T 3l6x_A 143 RKARDMDLTEVITGTLWNLSS---HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRN 218 (584)
T ss_dssp HHCCSHHHHHHHHHHHHHHTT---SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhC---CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHH
Confidence 97 578999999999999997 7899999995 68999999872 22367999999999999
Q ss_pred hcccc-hhhHHHHh-hChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHH-----------------
Q psy15592 148 LSSCE-DLKKSIID-DGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYA----------------- 208 (294)
Q Consensus 148 Ls~~~-~~r~~i~~-~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~----------------- 208 (294)
||.+. ++|..|++ .|+++.|+.++....... ..+..++++|+++|+||+......
T Consensus 219 Ls~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~------~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~ 292 (584)
T 3l6x_A 219 VSSERSEARRKLRECDGLVDALIFIVQAEIGQK------DSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANN 292 (584)
T ss_dssp HTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTT------CCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----------
T ss_pred HhcCCHHHHHHHHHcCCcHHHHHHHHHHhhccc------CccHHHHHHHHHHHHHhhccccccccchhhhhhhccccccc
Confidence 99876 56999998 577788988885210000 012358899999999999753110
Q ss_pred --------HHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 209 --------RKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 209 --------r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
...+++ .++++.|+.+|..+. .+.++|+|+++|+|||...
T Consensus 293 ~~~~~~~Gve~L~~-~~~v~~Ll~LL~~s~-----~~~v~E~Aa~AL~nL~ag~ 340 (584)
T 3l6x_A 293 TGTSPARGYELLFQ-PEVVRIYISLLKESK-----TPAILEASAGAIQNLCAGR 340 (584)
T ss_dssp ---CCCCGGGGGGS-HHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHSSC
T ss_pred ccccCchhHHHHhc-ccHHHHHHHHHccCC-----CHHHHHHHHHHHHHHHcCC
Confidence 011122 245677888886432 3689999999999998765
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.92 E-value=3.4e-24 Score=205.38 Aligned_cols=222 Identities=19% Similarity=0.265 Sum_probs=192.6
Q ss_pred hhHHHhhhcccc---ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC-
Q psy15592 11 SQEEFYSPSLNK---KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG- 86 (294)
Q Consensus 11 ~q~~al~~l~~l---~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~- 86 (294)
.|.+|.++|.|+ +++++..+++.|++|.|+++|+++++++++.|+++|+|++.+++++|..+.+.|++++|+.+|.
T Consensus 117 lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~ 196 (510)
T 3ul1_B 117 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 196 (510)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHh
Confidence 588999999988 5678889999999999999999999999999999999999877889999999999988888775
Q ss_pred ----------------------------------------------CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcC
Q psy15592 87 ----------------------------------------------HESPDVFRNACGALRNLSYGRQNDENKRAIKNAG 120 (294)
Q Consensus 87 ----------------------------------------------s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g 120 (294)
+++++++..|+++|++|+.+ .......+.+.|
T Consensus 197 ~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~--~~~~~~~i~~~g 274 (510)
T 3ul1_B 197 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PNERIEMVVKKG 274 (510)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CHHHHHHHHTTT
T ss_pred ccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--hhhhHHHHHhcc
Confidence 34567788889999999974 666677888999
Q ss_pred ChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHH
Q psy15592 121 GIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLR 199 (294)
Q Consensus 121 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~ 199 (294)
+++.|+.+|.+ .+..++..++++|+|++.. +..+..+++.|+++.+..++.. ....+++.++++|+
T Consensus 275 ~i~~Lv~lL~~-~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~------------~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 275 VVPQLVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN------------PKTNIQKEATWTMS 341 (510)
T ss_dssp CHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC------------SSHHHHHHHHHHHH
T ss_pred cchhhhhhhcC-CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC------------CCHHHHHHHHHHHH
Confidence 99999999988 5999999999999999775 5778889999999998888831 12568999999999
Q ss_pred hhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 200 NASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 200 nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
||+..++..++.+.+ .|+++.|+.++.+. +.++++.|+++|.||+.+.
T Consensus 342 nl~a~~~~~~~~v~~-~g~i~~Lv~lL~~~------~~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 342 NITAGRQDQIQQVVN-HGLVPFLVGVLSKA------DFKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp HHTTSCHHHHHHHHH-TTHHHHHHHHHHSS------CHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCcHHHHHHHHh-cCCHHHHHHHHcCC------CHHHHHHHHHHHHHHHccC
Confidence 999999889999998 69999999999643 4689999999999999764
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.92 E-value=8.7e-24 Score=203.32 Aligned_cols=223 Identities=19% Similarity=0.264 Sum_probs=193.4
Q ss_pred chhHHHhhhcccc---ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC
Q psy15592 10 GSQEEFYSPSLNK---KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG 86 (294)
Q Consensus 10 ~~q~~al~~l~~l---~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~ 86 (294)
..|.+|+++|.|+ +++++..+++.|+++.|+.+|.++++++++.|+++|+|++.+++++|..+.+.|++++|+.+|.
T Consensus 135 ~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~ 214 (529)
T 3tpo_A 135 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214 (529)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHh
Confidence 3578889999988 4567788999999999999999999999999999999999878899999999999988888774
Q ss_pred -----------------------------------------------CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhc
Q psy15592 87 -----------------------------------------------HESPDVFRNACGALRNLSYGRQNDENKRAIKNA 119 (294)
Q Consensus 87 -----------------------------------------------s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~ 119 (294)
+++++++..|+++|.+++.+ ++.....+++.
T Consensus 215 ~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~v~~~ 292 (529)
T 3tpo_A 215 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PNERIEMVVKK 292 (529)
T ss_dssp SSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHHHHHTT
T ss_pred ccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh--hhhhHHHHHhc
Confidence 34567788888999999974 66677888899
Q ss_pred CChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHH
Q psy15592 120 GGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVL 198 (294)
Q Consensus 120 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L 198 (294)
|+++.|+.+|.+ .+..++..++.+|+||+.. +..+..+++.|+++.+..++.. .+..+++.|+++|
T Consensus 293 g~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~------------~~~~i~~~a~~aL 359 (529)
T 3tpo_A 293 GVVPQLVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN------------PKTNIQKEATWTM 359 (529)
T ss_dssp TCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC------------SSHHHHHHHHHHH
T ss_pred cchHHHHHHhcC-CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC------------CCHHHHHHHHHHH
Confidence 999999999988 5999999999999999875 5778889999999999999841 1246899999999
Q ss_pred HhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 199 RNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 199 ~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
+||+..++..+..+.+ .|+++.|+.++.+. +.++++.|+++|.||+.+.
T Consensus 360 ~nl~~~~~~~~~~v~~-~g~i~~Lv~lL~~~------~~~v~~~A~~aL~nl~~~~ 408 (529)
T 3tpo_A 360 SNITAGRQDQIQQVVN-HGLVPFLVGVLSKA------DFKTQKAAAWAITNYTSGG 408 (529)
T ss_dssp HHHHTSCHHHHHHHHH-TTHHHHHHHHHHSS------CHHHHHHHHHHHHHHHHHS
T ss_pred HHHhcccHHHHHHHHh-cCcHHHHHHHhcCC------CHHHHHHHHHHHHHHHcCC
Confidence 9999999888898988 69999999999643 4589999999999999754
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.92 E-value=3.1e-23 Score=178.73 Aligned_cols=199 Identities=24% Similarity=0.348 Sum_probs=180.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhH
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENK 113 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k 113 (294)
|+++.|+++|++++++++..|+++|.+++..+++++..+.+.|+++.|+.+|++++++++..|+++|++|+.+ ++.++
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC--ChHHH
Confidence 6799999999999999999999999999987777999999999999999999999999999999999999983 69999
Q ss_pred HHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhc-ccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHH
Q psy15592 114 RAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS-SCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFR 192 (294)
Q Consensus 114 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs-~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~ 192 (294)
..+.+.|+++.|+.+|++ .+++++..++++|+||+ ..++++..+.+.|+++.++.++.. .+..+++
T Consensus 80 ~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~------------~~~~~~~ 146 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS------------TDSEVQK 146 (252)
T ss_dssp HHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC------------SCHHHHH
T ss_pred HHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC------------CCHHHHH
Confidence 999999999999999998 58999999999999999 567899999999999999999941 1256899
Q ss_pred hHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 193 NTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 193 ~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
.++++|+||+..++..++.+.+ .|+++.|+.++. +.++.+++.|+.+|.||+...
T Consensus 147 ~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~ 201 (252)
T 4hxt_A 147 EAARALANIASGPDEAIKAIVD-AGGVEVLVKLLT------STDSEVQKEAARALANIASGP 201 (252)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-CcCHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999988878888888 799999999995 335689999999999999754
No 16
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=5.8e-25 Score=189.52 Aligned_cols=184 Identities=21% Similarity=0.197 Sum_probs=155.6
Q ss_pred hhHHHhhhcccc---ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC-
Q psy15592 11 SQEEFYSPSLNK---KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG- 86 (294)
Q Consensus 11 ~q~~al~~l~~l---~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~- 86 (294)
.|..+.+.+.++ ++++|..+++.|+||+||++|+++++++++.|+++|+||++.++++|..|.+.||||+|+++|+
T Consensus 26 ~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~ 105 (233)
T 3tt9_A 26 RISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQ 105 (233)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHcc
Confidence 345666777666 5678999999999999999999999999999999999999878899999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhc---c------------CCCHHHHHHHHHHHHHhcc-
Q psy15592 87 HESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLR---K------------TADAEVKELVTGVLWNLSS- 150 (294)
Q Consensus 87 s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~---~------------~~~~~~~~~a~~~L~nLs~- 150 (294)
+++.++++.|+++||||+. .+.+|..|++ +++++|+.++. + ..+.++++++.++|+|||+
T Consensus 106 ~~~~~~~e~a~~aL~nLS~---~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~ 181 (233)
T 3tt9_A 106 TRDLETKKQITGLLWNLSS---NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA 181 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHT---SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHc---ChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcC
Confidence 5789999999999999997 7889999987 47999998763 1 1367999999999999988
Q ss_pred cchhhHHHHhh-ChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhcc
Q psy15592 151 CEDLKKSIIDD-GLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSA 204 (294)
Q Consensus 151 ~~~~r~~i~~~-g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~ 204 (294)
++++|..|.+. |+++.|+.++....... ..+...+++|+++|+||+..
T Consensus 182 ~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~------~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 182 GADGRKAMRRCDGLIDSLVHYVRGTIADY------QPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CHHHHHHHHTSTTHHHHHHHHHHHHHHTT------CTTCHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHCCCcHHHHHHHHHhhhhcc------cchhHHHHHHHHHHHHHHhh
Confidence 45999999985 78899999986321111 12245889999999999974
No 17
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.90 E-value=8.1e-23 Score=177.02 Aligned_cols=201 Identities=19% Similarity=0.304 Sum_probs=179.9
Q ss_pred cCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy15592 32 RDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 32 ~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
.....+.++++|++++++++..|+++|.++...+++++..+.+.|+++.|+.+|++++++++..|+++|.+++.+ +++
T Consensus 10 ~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~ 87 (252)
T 4db8_A 10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNE 87 (252)
T ss_dssp TTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHH
T ss_pred ccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHH
Confidence 455689999999999999999999999775544678899999999999999999999999999999999999975 889
Q ss_pred hHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhh-HHHHhhChHHHHHHhhccCCCCCCCCCCccchhhH
Q psy15592 112 NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLK-KSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTI 190 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r-~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v 190 (294)
++..+++.|+++.|+.+|++ .++.+++.++++|+||+.+++.+ ..+.+.|+++.++.++.. .+..+
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~------------~~~~v 154 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS------------PNEQI 154 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC------------SCHHH
T ss_pred HHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC------------CCHHH
Confidence 99999999999999999998 58999999999999999999888 888899999999999942 12568
Q ss_pred HHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 191 FRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 191 ~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
++.++++|.||+..+++.+..+.+ .|+++.|+.++.+ .++++++.|+.+|.||+...
T Consensus 155 ~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 155 LQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSS------PNEQILQEALWALSNIASGG 211 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHGGGC------SSHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHCC------CCHHHHHHHHHHHHHHhcCC
Confidence 999999999999988888888888 6999999999953 35789999999999999654
No 18
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.90 E-value=1.9e-23 Score=207.97 Aligned_cols=223 Identities=17% Similarity=0.097 Sum_probs=189.2
Q ss_pred chhHHHhhhcccc--ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHH---HhcCChHHHHHh
Q psy15592 10 GSQEEFYSPSLNK--KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKT---RSLGGIPPLVKL 84 (294)
Q Consensus 10 ~~q~~al~~l~~l--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i---~~~g~i~~Lv~l 84 (294)
..|++|+++|.|+ +++++..+++.|++++|+.+|+++++..++.|+++|.+++..... ...+ ...|++|+|+.+
T Consensus 510 ~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p-~~~~~~~~~~~aIppLv~L 588 (810)
T 3now_A 510 NSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP-EVSFSGQRSLDVIRPLLNL 588 (810)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HHHTTTHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh-hhhhcchhhhcHHHHHHHH
Confidence 5799999999999 567999999999999999999999999999999999999854222 2211 124699999999
Q ss_pred hCCCC-HHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHh-hC
Q psy15592 85 LGHES-PDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIID-DG 162 (294)
Q Consensus 85 L~s~~-~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~-~g 162 (294)
|.++. ...+..|+++|+||+.+ +++++..+++.|+++.|+.+|.+ .++.+++.++++|+||+.+++.+..+++ .|
T Consensus 589 L~~~~~~l~~~eAl~AL~NLa~~--~d~~~~~Ii~aG~l~~Lv~LL~s-~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g 665 (810)
T 3now_A 589 LQQDCTALENFESLMALTNLASM--NESVRQRIIKEQGVSKIEYYLME-DHLYLTRAAAQCLCNLVMSEDVIKMFEGNND 665 (810)
T ss_dssp TSTTSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHHHS-CCTTHHHHHHHHHHHHTTSHHHHHHHHSSSS
T ss_pred hCCCCcHHHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCChHHHHHHHhccC
Confidence 98763 44567899999999984 68899999999999999999988 4889999999999999999999888886 78
Q ss_pred hHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHH
Q psy15592 163 LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVEN 242 (294)
Q Consensus 163 ~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~ 242 (294)
.++.|+.++.. .+..+++.|+|+|+||+..++...+.+.+..|+++.|+.++.+ .+.++++.
T Consensus 666 ~l~~Lv~LL~s------------~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s------~d~~vq~~ 727 (810)
T 3now_A 666 RVKFLALLCED------------EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN------PSPAVQHR 727 (810)
T ss_dssp HHHHHHHGGGC------------SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC------SSHHHHHH
T ss_pred cHHHHHHHhcC------------CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC------CCHHHHHH
Confidence 99999999941 1256999999999999996666777777646999999999953 35799999
Q ss_pred HHHHHHHhccCC
Q psy15592 243 CVCILRNLSFRC 254 (294)
Q Consensus 243 a~~~L~nLs~~~ 254 (294)
|+++|.||+.+.
T Consensus 728 A~~aL~NL~~~s 739 (810)
T 3now_A 728 GIVIILNMINAG 739 (810)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhCC
Confidence 999999999854
No 19
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.90 E-value=1.2e-22 Score=194.56 Aligned_cols=206 Identities=14% Similarity=0.143 Sum_probs=178.2
Q ss_pred cccccCCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy15592 28 SLRWRDPNLTEVISFLS-NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYG 106 (294)
Q Consensus 28 ~~i~~~g~i~~Lv~lL~-s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~ 106 (294)
+.+++.|+||.||++|+ ++++++|..|+++|.|++..+++++..+++.|+||.|+.+|++++++++..|+++|+||+.+
T Consensus 94 ~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 46789999999999997 56689999999999999988899999999999999999999999999999999999999974
Q ss_pred CCChhhHHHHHhcCChHHHHHHhccC----CCHHHHHHHHHHHHHhcccchhhHHHH-hhChHHHHHHhhccCCCCCCCC
Q psy15592 107 RQNDENKRAIKNAGGIPLLINLLRKT----ADAEVKELVTGVLWNLSSCEDLKKSII-DDGLQVVVNHIIIPHSGWDPVS 181 (294)
Q Consensus 107 ~~~~~~k~~i~~~g~i~~Lv~lL~~~----~~~~~~~~a~~~L~nLs~~~~~r~~i~-~~g~i~~L~~ll~~~s~~~~~~ 181 (294)
++.+|..+.+.|++++|+.+|... .....++.++++|+|++.+......+. ..|+++.|..++. +
T Consensus 174 --~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~--~------ 243 (510)
T 3ul1_B 174 --GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--H------ 243 (510)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT--C------
T ss_pred --CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh--c------
Confidence 788999999999999999999763 235678899999999998775555444 4688899999883 1
Q ss_pred CCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 182 AGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 182 ~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
.+..++..++++|++|+..+.+..+.+.+ .|+++.|+.++.+ .+..+++.++.+|+|++.+.
T Consensus 244 ----~~~~v~~~A~~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~------~~~~v~~~al~aL~nl~~~~ 305 (510)
T 3ul1_B 244 ----NDPEVLADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLGA------TELPIVTPALRAIGNIVTGT 305 (510)
T ss_dssp ----SCHHHHHHHHHHHHHHTSSCHHHHHHHHT-TTCHHHHHHHHTC------SCHHHHHHHHHHHHHHTTSC
T ss_pred ----CCHHHHHHHHHHHHHHhhchhhhHHHHHh-cccchhhhhhhcC------CChhhhhHHHHHHHHhhcCC
Confidence 22568999999999999988777777777 7999999999953 34689999999999998775
No 20
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=7.2e-22 Score=188.26 Aligned_cols=237 Identities=21% Similarity=0.244 Sum_probs=200.9
Q ss_pred hhHHHhhhcccc--ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC
Q psy15592 11 SQEEFYSPSLNK--KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE 88 (294)
Q Consensus 11 ~q~~al~~l~~l--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~ 88 (294)
.+..++.+|.++ +++++..+.+.|+++.|+++|++++++++..|+++|.+++..++..+..+.+.|+++.|+++|+++
T Consensus 76 ~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~ 155 (529)
T 1jdh_A 76 TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 155 (529)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC
Confidence 456667777766 456888899999999999999999999999999999999977677888999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHH
Q psy15592 89 SPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVN 168 (294)
Q Consensus 89 ~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~ 168 (294)
+.+++..++.+|++++.+ +++++..+.+.|+++.|+++|++..+...+..++.+|+||+.+++++..+++.|+++.+.
T Consensus 156 ~~~~~~~~~~~L~~la~~--~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~ 233 (529)
T 1jdh_A 156 NVKFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 233 (529)
T ss_dssp CHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhC--CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHH
Confidence 999999999999999985 799999999999999999999987778888899999999999999999999999999888
Q ss_pred HhhccCCC---------------CCCCCC------------CccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHH
Q psy15592 169 HIIIPHSG---------------WDPVSA------------GETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDS 221 (294)
Q Consensus 169 ~ll~~~s~---------------~~~~~~------------~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~ 221 (294)
.++..... ...... -...+..+...++++|+||+..+++++..+.+ .|+++.
T Consensus 234 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~ 312 (529)
T 1jdh_A 234 LHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEA 312 (529)
T ss_dssp TTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHH-TTHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHH
Confidence 88742100 000000 01234678899999999999988889999998 699999
Q ss_pred HHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 222 LLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 222 Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
|++++.... .++++++.|+.+|+||+.+.
T Consensus 313 L~~ll~~~~----~~~~v~~~a~~~L~nl~~~~ 341 (529)
T 1jdh_A 313 LVRTVLRAG----DREDITEPAICALRHLTSRH 341 (529)
T ss_dssp HHHHHHHHT----TCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHccC----CHHHHHHHHHHHHHHHHcCC
Confidence 999997542 23589999999999999875
No 21
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.89 E-value=1.4e-22 Score=201.81 Aligned_cols=204 Identities=17% Similarity=0.160 Sum_probs=170.8
Q ss_pred cccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy15592 28 SLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGR 107 (294)
Q Consensus 28 ~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~ 107 (294)
..++++|+++.|+.+|+++++++++.|+++|.|++ .++++|..+.+.|++|+|+.+|+++++..+..|+++|.||+.+
T Consensus 489 ~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~- 566 (810)
T 3now_A 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGIT- 566 (810)
T ss_dssp HHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcC-
Confidence 46778999999999999999999999999999999 4688999999999999999999999999999999999999862
Q ss_pred CChhhHHHH---HhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHHHHHHhhccCCCCCCCCCC
Q psy15592 108 QNDENKRAI---KNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAG 183 (294)
Q Consensus 108 ~~~~~k~~i---~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~ 183 (294)
.++. ..+ ...|++++|+.+|....+...+..++++|.||+.. ++++..++++|+++.|+.++. ++.
T Consensus 567 ~~p~--~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~--s~~------ 636 (810)
T 3now_A 567 INPE--VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM--EDH------ 636 (810)
T ss_dssp SCHH--HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH--SCC------
T ss_pred CChh--hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc--CCC------
Confidence 1322 211 12469999999998644556667899999999987 588999999999999999984 111
Q ss_pred ccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 184 ETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 184 ~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
..+++.|+++|+||+.+++ .+..+.+..|.++.|+.++.+ .+.++++.|+++|+||+.+.
T Consensus 637 ----~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s------~d~~vq~~Aa~ALanLt~~s 696 (810)
T 3now_A 637 ----LYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCED------EDEETATACAGALAIITSVS 696 (810)
T ss_dssp ----TTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGC------SSHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcC------CCHHHHHHHHHHHHHHhCCC
Confidence 3489999999999998765 666666425899999999943 35689999999999999853
No 22
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.89 E-value=6.7e-22 Score=190.13 Aligned_cols=206 Identities=14% Similarity=0.143 Sum_probs=178.1
Q ss_pred cccccCCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy15592 28 SLRWRDPNLTEVISFLS-NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYG 106 (294)
Q Consensus 28 ~~i~~~g~i~~Lv~lL~-s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~ 106 (294)
+.+++.|+||.||++|+ ++++.++..|+++|.|++..+.+.+..+++.|+||.|+.+|.+++++++..|+++|+||+.+
T Consensus 113 ~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~ 192 (529)
T 3tpo_A 113 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA 192 (529)
T ss_dssp HHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 45779999999999996 56799999999999999988888899999999999999999999999999999999999974
Q ss_pred CCChhhHHHHHhcCChHHHHHHhccC----CCHHHHHHHHHHHHHhcccchhhHHHH-hhChHHHHHHhhccCCCCCCCC
Q psy15592 107 RQNDENKRAIKNAGGIPLLINLLRKT----ADAEVKELVTGVLWNLSSCEDLKKSII-DDGLQVVVNHIIIPHSGWDPVS 181 (294)
Q Consensus 107 ~~~~~~k~~i~~~g~i~~Lv~lL~~~----~~~~~~~~a~~~L~nLs~~~~~r~~i~-~~g~i~~L~~ll~~~s~~~~~~ 181 (294)
++.++..+++.|++++|+.+|... ....+++.++++|+|++.+......+. ..|+++.|..++. +
T Consensus 193 --~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~--~------ 262 (529)
T 3tpo_A 193 --GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--H------ 262 (529)
T ss_dssp --CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTT--S------
T ss_pred --CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhc--C------
Confidence 789999999999999999999763 235678899999999998775554444 4788899999983 1
Q ss_pred CCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 182 AGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 182 ~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
.+..+...++++|++++..+.+..+.+.+ .|+++.|+.++.+ .+..+++.++.+|+||+.+.
T Consensus 263 ----~~~~v~~~a~~aL~~l~~~~~~~~~~v~~-~g~i~~Lv~lL~~------~~~~v~~~a~~aL~nl~~~~ 324 (529)
T 3tpo_A 263 ----NDPEVLADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLGA------TELPIVTPALRAIGNIVTGT 324 (529)
T ss_dssp ----SCHHHHHHHHHHHHHHHSSCHHHHHHHHT-TTCHHHHHHHHTC------SCHHHHHHHHHHHHHHTTSC
T ss_pred ----CcHHHHHHHHHHHHHhhhhhhhhHHHHHh-ccchHHHHHHhcC------CChhHHHHHHHHHHHHHccc
Confidence 22568999999999999988877777887 7999999999953 34689999999999999776
No 23
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=7.9e-22 Score=176.27 Aligned_cols=220 Identities=14% Similarity=0.104 Sum_probs=175.8
Q ss_pred HHhhhcccc--ccccccccccCCCHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC-C
Q psy15592 14 EFYSPSLNK--KCRNSSLRWRDPNLTEVIS-FLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE-S 89 (294)
Q Consensus 14 ~al~~l~~l--~~~~~~~i~~~g~i~~Lv~-lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~-~ 89 (294)
.|+..|.++ +.+++..+.+.|++++|+. +|++++++++..|+++|++++..++.++..+++.|++++|+.+|+++ +
T Consensus 59 ~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~ 138 (296)
T 1xqr_A 59 GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDAC 138 (296)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCC
Confidence 344444444 3457777889999999999 99999999999999999999988889999999999999999999964 7
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHHHHH
Q psy15592 90 PDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVN 168 (294)
Q Consensus 90 ~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~L~ 168 (294)
+.++..|+++|.||+.+ ++..+..+.+.|+++.|+.+|++ .+..++..++++|.+|+.. ++.+..+++.|+++.|+
T Consensus 139 ~~v~~~A~~ALsnl~~~--~~~~~~~~~~~ggi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 139 DTVRVKALFAISCLVRE--QEAGLLQFLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CcHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 89999999999999974 77788899999999999999998 5999999999999999774 68899999999999999
Q ss_pred HhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhc--CC-CcchHHHHHH
Q psy15592 169 HIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKS--NI-GNKSVENCVC 245 (294)
Q Consensus 169 ~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~--~~-~~~~~e~a~~ 245 (294)
.+|.. + +..+++.++.+|.||+...+..+..... .-..|..+|+...+.- +. ..++.+.|..
T Consensus 216 ~LL~~--~----------d~~v~~~al~aL~~l~~~~~~~~~~~~~---~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~ 280 (296)
T 1xqr_A 216 ALVRT--E----------HSPFHEHVLGALCSLVTDFPQGVRECRE---PELGLEELLRHRCQLLQQHEEYQEELEFCEK 280 (296)
T ss_dssp HHHTS--C----------CSTHHHHHHHHHHHHHTTCHHHHHHHHC---GGGCHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHcC--C----------ChhHHHHHHHHHHHHHhCChhHHHHHhc---cHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 99942 1 2359999999999999886545444332 1123444443332221 11 3567788777
Q ss_pred HHHHhc
Q psy15592 246 ILRNLS 251 (294)
Q Consensus 246 ~L~nLs 251 (294)
++.++-
T Consensus 281 il~~~f 286 (296)
T 1xqr_A 281 LLQTCF 286 (296)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 777643
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=5.4e-22 Score=167.32 Aligned_cols=179 Identities=20% Similarity=0.264 Sum_probs=160.8
Q ss_pred chhHHHhhhcccc---ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC
Q psy15592 10 GSQEEFYSPSLNK---KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG 86 (294)
Q Consensus 10 ~~q~~al~~l~~l---~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~ 86 (294)
..|..++++|.++ +++++..+.+.|+++.|+++|++++++++..|+++|.+++..+++++..+.+.|+++.|+.+|+
T Consensus 27 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~ 106 (210)
T 4db6_A 27 QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106 (210)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHc
Confidence 4567777777776 4677778889999999999999999999999999999999878899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHH
Q psy15592 87 HESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQV 165 (294)
Q Consensus 87 s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~ 165 (294)
++++.++..|+++|+||+.+ ++..+..+.+.|+++.|+++|++ .+..+++.++++|+||+.. ++.+..+.+.|+++
T Consensus 107 ~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~ 183 (210)
T 4db6_A 107 SPNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH
T ss_pred CCcHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHH
Confidence 99999999999999999974 78888889999999999999988 4999999999999999987 68888999999999
Q ss_pred HHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhc
Q psy15592 166 VVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS 203 (294)
Q Consensus 166 ~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~ 203 (294)
.+..++.. .+..+++.|+++|.+|+.
T Consensus 184 ~L~~ll~~------------~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 184 KLEQLQSH------------ENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHGGGC------------SCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhC------------CCHHHHHHHHHHHHHHhc
Confidence 99999941 225699999999999985
No 25
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=1.8e-21 Score=173.87 Aligned_cols=197 Identities=17% Similarity=0.128 Sum_probs=171.4
Q ss_pred HHHHHHhhcCCC------------HHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHH
Q psy15592 36 LTEVISFLSNPN------------NVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVK-LLGHESPDVFRNACGALRN 102 (294)
Q Consensus 36 i~~Lv~lL~s~~------------~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~-lL~s~~~~v~~~a~~aL~n 102 (294)
++..+..|.++. .+.+..|+..|.+++. +.+++..+.+.||+|+|+. +|.++++.++..|+++|.|
T Consensus 30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ 108 (296)
T 1xqr_A 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGT 108 (296)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 566777777652 2568889999999994 6779999999999999999 9999999999999999999
Q ss_pred hhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHHHHHHhhccCCCCCCCC
Q psy15592 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVNHIIIPHSGWDPVS 181 (294)
Q Consensus 103 Ls~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~ 181 (294)
++.+ ++.++..+++.|++++|+.+|++..+..+++.++++|.||+.+ +...+.+.+.|+++.|+.++..
T Consensus 109 ia~~--n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-------- 178 (296)
T 1xqr_A 109 CSQN--VAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-------- 178 (296)
T ss_dssp HHTT--CHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS--------
T ss_pred HHhC--CHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC--------
Confidence 9974 8889999999999999999998755889999999999999865 5677889999999999999941
Q ss_pred CCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 182 AGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 182 ~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
.+..+++.++++|++|+..+++.+..+.+ .|+++.|+.+|.+ .+.+++++|+.+|.||....
T Consensus 179 ----~d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~g~i~~Lv~LL~~------~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 179 ----QVQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGMVQQLVALVRT------EHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTHHHHHHHHHTS------CCSTHHHHHHHHHHHHHTTC
T ss_pred ----CCHHHHHHHHHHHHHHHhCChHHHHHHHH-cCCHHHHHHHHcC------CChhHHHHHHHHHHHHHhCC
Confidence 13569999999999999888788999999 6999999999943 35789999999999998773
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.88 E-value=2.1e-21 Score=186.04 Aligned_cols=223 Identities=16% Similarity=0.106 Sum_probs=190.4
Q ss_pred hhHHHhhhcccc---c-cccccccccCCCHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhh
Q psy15592 11 SQEEFYSPSLNK---K-CRNSSLRWRDPNLTEVISFLSNPN-NVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL 85 (294)
Q Consensus 11 ~q~~al~~l~~l---~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL 85 (294)
.|..|+++|.++ . ..+...+.+.|+++.|+++|++++ +.++..|+++|.+++..+++++..+.+.|++++|+.+|
T Consensus 90 ~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL 169 (528)
T 4b8j_A 90 LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL 169 (528)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHh
Confidence 355666666555 2 245667788999999999999887 99999999999999987789999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHH
Q psy15592 86 GHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQV 165 (294)
Q Consensus 86 ~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~ 165 (294)
.++++.++..|+++|+||+.+ ++.++..+.+.|++++|+.+|....+..++..++++|++|+............|+++
T Consensus 170 ~~~~~~v~~~a~~aL~~l~~~--~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~ 247 (528)
T 4b8j_A 170 GSSSDDVREQAVWALGNVAGD--SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALP 247 (528)
T ss_dssp TCSCHHHHHHHHHHHHHHHHT--CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCC--ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 999999999999999999973 688899999999999999999654689999999999999998754455555689999
Q ss_pred HHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHH
Q psy15592 166 VVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVC 245 (294)
Q Consensus 166 ~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~ 245 (294)
.|+.++.. .+..+...++++|.+|+...+...+.+.+ .|+++.|+.+|.+ .++.+++.|+.
T Consensus 248 ~L~~lL~~------------~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~------~~~~v~~~a~~ 308 (528)
T 4b8j_A 248 ALARLIHS------------NDEEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLLH------PSPSVLIPALR 308 (528)
T ss_dssp HHHHHTTC------------CCHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTCHHHHHHHTTC------SCHHHHHHHHH
T ss_pred HHHHHHCC------------CCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCHHHHHHHHHcC------CChhHHHHHHH
Confidence 99999831 12568999999999999888767777888 6999999999953 34689999999
Q ss_pred HHHHhccCC
Q psy15592 246 ILRNLSFRC 254 (294)
Q Consensus 246 ~L~nLs~~~ 254 (294)
+|.||+.+.
T Consensus 309 ~L~nl~~~~ 317 (528)
T 4b8j_A 309 TVGNIVTGD 317 (528)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHcCC
Confidence 999999865
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=2.3e-21 Score=190.44 Aligned_cols=237 Identities=21% Similarity=0.244 Sum_probs=200.1
Q ss_pred hhHHHhhhcccc--ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC
Q psy15592 11 SQEEFYSPSLNK--KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE 88 (294)
Q Consensus 11 ~q~~al~~l~~l--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~ 88 (294)
.|..++.+|.++ .++++..+.+.|+++.|+++|+++++.++..|+++|.+++..+++.+..+.+.|+++.|+.+|+++
T Consensus 73 ~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 152 (644)
T 2z6h_A 73 TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 152 (644)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC
Confidence 566777777766 456888899999999999999999999999999999999977677888899999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHH
Q psy15592 89 SPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVN 168 (294)
Q Consensus 89 ~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~ 168 (294)
+++++..++.+|++|+.+ +++++..+.+.|+++.|+++|++......++.++.+|+||+.++++|..+++.|+++.+.
T Consensus 153 ~~~~~~~a~~~L~~La~~--~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~ 230 (644)
T 2z6h_A 153 NVKFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 230 (644)
T ss_dssp CHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhc--CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHH
Confidence 999999999999999975 899999999999999999999987678889999999999999999999999999998888
Q ss_pred HhhccCC---------------CCCCCC------------CCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHH
Q psy15592 169 HIIIPHS---------------GWDPVS------------AGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDS 221 (294)
Q Consensus 169 ~ll~~~s---------------~~~~~~------------~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~ 221 (294)
.++.... ...... .-...+..++++++++|+||+..++++++.+.+ .|+++.
T Consensus 231 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~-~g~v~~ 309 (644)
T 2z6h_A 231 LHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEA 309 (644)
T ss_dssp TTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHH
Confidence 8774210 000000 001234668899999999999988888999998 699999
Q ss_pred HHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 222 LLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 222 Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
|+.++.... ..+.+++.|+.+|+||+.+.
T Consensus 310 Lv~lL~~~~----~~~~v~~~a~~aL~nL~~~~ 338 (644)
T 2z6h_A 310 LVRTVLRAG----DREDITEPAICALRHLTSRH 338 (644)
T ss_dssp HHHHHHHHT----TCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHccC----CcHHHHHHHHHHHHHHhcCC
Confidence 999997542 12489999999999999765
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.86 E-value=9.7e-21 Score=181.34 Aligned_cols=223 Identities=15% Similarity=0.162 Sum_probs=190.7
Q ss_pred chhHHHhhhcccc---ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhh-
Q psy15592 10 GSQEEFYSPSLNK---KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL- 85 (294)
Q Consensus 10 ~~q~~al~~l~~l---~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL- 85 (294)
..|+.|+++|.++ .++++..+++.|+++.|+.+|.+++++++..|+++|.+++..++.++..+...|++++|+.+|
T Consensus 133 ~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~ 212 (528)
T 4b8j_A 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN 212 (528)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh
Confidence 3477888888887 357788888999999999999999999999999999999987788899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchh-hHHHHhhChH
Q psy15592 86 GHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDL-KKSIIDDGLQ 164 (294)
Q Consensus 86 ~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~-r~~i~~~g~i 164 (294)
.+.++.++..++++|.+|+.+ . .........|+++.|+.+|.+ .+..++..++++|++|+..++. ...+++.|++
T Consensus 213 ~~~~~~v~~~a~~~L~~L~~~--~-~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v 288 (528)
T 4b8j_A 213 EHTKLSMLRNATWTLSNFCRG--K-PQPSFEQTRPALPALARLIHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288 (528)
T ss_dssp TTCCHHHHHHHHHHHHHHHCS--S-SCCCHHHHTTHHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCH
T ss_pred cCCCHHHHHHHHHHHHHHHcC--C-CCCcHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHH
Confidence 667899999999999999973 2 333344458999999999988 5999999999999999987655 4677789999
Q ss_pred HHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHH
Q psy15592 165 VVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCV 244 (294)
Q Consensus 165 ~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~ 244 (294)
+.++.++.. .+..+...|+++|.||+..++..++.+.+ .|+++.|+.+|.+. .+..+++.|+
T Consensus 289 ~~Lv~lL~~------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~-----~~~~v~~~A~ 350 (528)
T 4b8j_A 289 PRLVELLLH------------PSPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQN-----LKKSIKKEAC 350 (528)
T ss_dssp HHHHHHTTC------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSC-----CCHHHHHHHH
T ss_pred HHHHHHHcC------------CChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCC-----CcHHHHHHHH
Confidence 999999941 12468999999999999988888888888 69999999999632 1468999999
Q ss_pred HHHHHhccCC
Q psy15592 245 CILRNLSFRC 254 (294)
Q Consensus 245 ~~L~nLs~~~ 254 (294)
++|.||+...
T Consensus 351 ~~L~nl~~~~ 360 (528)
T 4b8j_A 351 WTISNITAGN 360 (528)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHCCC
Confidence 9999999754
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.85 E-value=3e-20 Score=178.21 Aligned_cols=221 Identities=11% Similarity=0.072 Sum_probs=188.2
Q ss_pred hHHHhhhcccc----ccccccccccCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC
Q psy15592 12 QEEFYSPSLNK----KCRNSSLRWRDPNLTEVISFLSNP-NNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG 86 (294)
Q Consensus 12 q~~al~~l~~l----~~~~~~~i~~~g~i~~Lv~lL~s~-~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~ 86 (294)
|..|+..|.++ ...+...+.+.|+++.|+++|.++ ++.++..|+++|.+++..+++.+..+...|+++.|+.+|+
T Consensus 104 ~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~ 183 (530)
T 1wa5_B 104 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 183 (530)
T ss_dssp HHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHc
Confidence 45555555544 133445677899999999999987 8999999999999999777788999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccc-hhhHHHHhhChHH
Q psy15592 87 HESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE-DLKKSIIDDGLQV 165 (294)
Q Consensus 87 s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-~~r~~i~~~g~i~ 165 (294)
++++.++..|+++|++|+.+ ++.++..+.+.|+++.|+.++.+ .+..++..++++|++|+... .........|+++
T Consensus 184 ~~~~~vr~~A~~aL~~l~~~--~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 260 (530)
T 1wa5_B 184 TGSVEVKEQAIWALGNVAGD--STDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALP 260 (530)
T ss_dssp HCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHH
T ss_pred CCCHHHHHHHHHHHHHHhCC--CccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHH
Confidence 99999999999999999973 67889999999999999999988 69999999999999999865 5555666689999
Q ss_pred HHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHH
Q psy15592 166 VVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVC 245 (294)
Q Consensus 166 ~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~ 245 (294)
.+..++.. .+..+...++++|.+|+...++.++.+.+ .|+++.|+.++. +.+..+++.|+.
T Consensus 261 ~L~~lL~~------------~d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~------~~~~~v~~~a~~ 321 (530)
T 1wa5_B 261 TLAKLIYS------------MDTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLS------HESTLVQTPALR 321 (530)
T ss_dssp HHHHHTTC------------CCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGG------CSCHHHHHHHHH
T ss_pred HHHHHHcC------------CCHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHC------CCChhhHHHHHH
Confidence 99999831 12568999999999999888777888887 699999999994 335689999999
Q ss_pred HHHHhccCC
Q psy15592 246 ILRNLSFRC 254 (294)
Q Consensus 246 ~L~nLs~~~ 254 (294)
+|.||+.+.
T Consensus 322 ~L~~l~~~~ 330 (530)
T 1wa5_B 322 AVGNIVTGN 330 (530)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHcCC
Confidence 999999765
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.85 E-value=5e-20 Score=184.88 Aligned_cols=238 Identities=21% Similarity=0.252 Sum_probs=200.2
Q ss_pred hhHHHhhhcccc--ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCC
Q psy15592 11 SQEEFYSPSLNK--KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHE 88 (294)
Q Consensus 11 ~q~~al~~l~~l--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~ 88 (294)
.+..++.+|.++ .++++..+.+.|+++.|+++|+++++.++..|+++|.+++..+++.+..+++.|+++.|+.+|+++
T Consensus 209 vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~ 288 (780)
T 2z6g_A 209 TARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 288 (780)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC
Confidence 466777777776 456678888999999999999999999999999999999977678888888999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHH
Q psy15592 89 SPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVN 168 (294)
Q Consensus 89 ~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~ 168 (294)
+.+++..++.+|++|+.+ +++++..+.+.|+++.|+++|++......++.++.+|++|+.+++++..+++.|+++.|.
T Consensus 289 ~~~v~~~a~~aL~~La~~--~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll 366 (780)
T 2z6g_A 289 NVKFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 366 (780)
T ss_dssp CHHHHHHHHHHHHHHHTT--CHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHG
T ss_pred CHHHHHHHHHHHHHHhcC--ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHH
Confidence 999999999999999985 899999999999999999999987677788899999999999999999999999999888
Q ss_pred HhhccCC---------------CCCCCC--C----------CccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHH
Q psy15592 169 HIIIPHS---------------GWDPVS--A----------GETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDS 221 (294)
Q Consensus 169 ~ll~~~s---------------~~~~~~--~----------~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~ 221 (294)
.++.... ...... . -...+..++++++++|+||+..+++.+..+.+ .|+++.
T Consensus 367 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~-~g~i~~ 445 (780)
T 2z6g_A 367 LHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEA 445 (780)
T ss_dssp GGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT-TTHHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHH
Confidence 8774210 000000 0 01234668899999999999998888999998 699999
Q ss_pred HHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 222 LLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 222 Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
|+.+|.... ..+.+++.|+.+|+||+.+..
T Consensus 446 Lv~lL~~~~----~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 446 LVRTVLRAG----DREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp HHHHHHHHT----TCHHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHccC----CHHHHHHHHHHHHHHHHhcCc
Confidence 999997532 113799999999999997653
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.84 E-value=5.2e-20 Score=176.54 Aligned_cols=222 Identities=14% Similarity=0.129 Sum_probs=190.3
Q ss_pred hhHHHhhhcccc---ccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCC
Q psy15592 11 SQEEFYSPSLNK---KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGH 87 (294)
Q Consensus 11 ~q~~al~~l~~l---~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s 87 (294)
.|++++++|.++ .++++..+++.|+++.|+.+|++++++++..|+++|.+++..+++++..+...|++++|+.+|.+
T Consensus 147 v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 226 (530)
T 1wa5_B 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS 226 (530)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc
Confidence 577888888877 24566778889999999999999999999999999999997777899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHHH
Q psy15592 88 ESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVV 166 (294)
Q Consensus 88 ~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~ 166 (294)
.++.++..|+++|.+|+.+ ...........|+++.|+.+|.+ .++.++..++++|.+|+.. ++.+..+++.|+++.
T Consensus 227 ~~~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~ 303 (530)
T 1wa5_B 227 NKPSLIRTATWTLSNLCRG--KKPQPDWSVVSQALPTLAKLIYS-MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 303 (530)
T ss_dssp CCHHHHHHHHHHHHHHHCC--SSSCCCHHHHGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHHhCC--CCCCCcHHHHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHH
Confidence 9999999999999999973 32334455568999999999988 5899999999999999976 466788888999999
Q ss_pred HHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHH
Q psy15592 167 VNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCI 246 (294)
Q Consensus 167 L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~ 246 (294)
|+.++.. .+..+...++++|.|++..++...+.+.+ .|+++.|+.+|.+ .+..+++.|+.+
T Consensus 304 Lv~lL~~------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~------~~~~vr~~A~~a 364 (530)
T 1wa5_B 304 LVELLSH------------ESTLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSS------PKENIKKEACWT 364 (530)
T ss_dssp HHHGGGC------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTC------SCHHHHHHHHHH
T ss_pred HHHHHCC------------CChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcC------CCHHHHHHHHHH
Confidence 9999941 12468899999999999888777788888 6999999999943 346899999999
Q ss_pred HHHhccCC
Q psy15592 247 LRNLSFRC 254 (294)
Q Consensus 247 L~nLs~~~ 254 (294)
|.||+...
T Consensus 365 L~~l~~~~ 372 (530)
T 1wa5_B 365 ISNITAGN 372 (530)
T ss_dssp HHHHTTSC
T ss_pred HHHHHcCC
Confidence 99999765
No 32
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.83 E-value=2.1e-19 Score=171.19 Aligned_cols=204 Identities=18% Similarity=0.207 Sum_probs=173.5
Q ss_pred cccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc-CChHHHHHhhCCC-CHHHHHHHHHHHHHhhc
Q psy15592 28 SLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL-GGIPPLVKLLGHE-SPDVFRNACGALRNLSY 105 (294)
Q Consensus 28 ~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~-g~i~~Lv~lL~s~-~~~v~~~a~~aL~nLs~ 105 (294)
......|+++.|+++|+++++.++..|+.+|.+++. +++++..+... |++++|+++|.++ +++++..|+++|++|+.
T Consensus 11 ~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~ 89 (529)
T 1jdh_A 11 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 89 (529)
T ss_dssp ------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred hhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 345678999999999999999999999999999995 56788778765 8999999999765 89999999999999997
Q ss_pred CCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHHHHHHhhccCCCCCCCCCCc
Q psy15592 106 GRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGE 184 (294)
Q Consensus 106 ~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~ 184 (294)
+++++..+.+.|+++.|+++|++ .++.++..++++|++|+.. ++.+..+.+.|+++.++.++.. +
T Consensus 90 ---~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~-------- 155 (529)
T 1jdh_A 90 ---HREGLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK--T-------- 155 (529)
T ss_dssp ---SHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC--C--------
T ss_pred ---CchhHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc--C--------
Confidence 67899999999999999999988 5899999999999999987 5778888899999999999942 1
Q ss_pred cchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 185 TCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 185 ~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
+..+...++++|+|++..+++++..+.+ .|+++.|++++++. .+...++.+..+|+||+...
T Consensus 156 --~~~~~~~~~~~L~~la~~~~~~~~~i~~-~~~i~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~~~ 217 (529)
T 1jdh_A 156 --NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTY-----TYEKLLWTTSRVLKVLSVCS 217 (529)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTST
T ss_pred --CHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHhC-----ChHHHHHHHHHHHHHHhcCc
Confidence 1457888999999999988889999999 69999999999753 23567888999999998643
No 33
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.83 E-value=3.9e-19 Score=165.80 Aligned_cols=222 Identities=14% Similarity=0.117 Sum_probs=183.6
Q ss_pred hhHHHhhhcccc----ccccccccccC-CCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHh
Q psy15592 11 SQEEFYSPSLNK----KCRNSSLRWRD-PNLTEVISFLSNP-NNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKL 84 (294)
Q Consensus 11 ~q~~al~~l~~l----~~~~~~~i~~~-g~i~~Lv~lL~s~-~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~l 84 (294)
.++.|+..|..+ .+.....+.+. |.++.|+++|+++ ++.++..|+++|.+++..+++.+..+.+.|+++.|+.+
T Consensus 36 ~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 115 (450)
T 2jdq_A 36 QQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIEL 115 (450)
T ss_dssp HHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHH
Confidence 355666555443 12222334456 9999999999998 89999999999999997777888888899999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccc--hhhHHHHhhC
Q psy15592 85 LGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE--DLKKSIIDDG 162 (294)
Q Consensus 85 L~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~--~~r~~i~~~g 162 (294)
|++++++++..|+++|++++.+ ++.++..+.+.|+++.|+.++.+..+..++..++++|++|+... ..+..++ .+
T Consensus 116 L~~~~~~vr~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~ 192 (450)
T 2jdq_A 116 LSSEFEDVQEQAVWALGNIAGD--STMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SP 192 (450)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GG
T ss_pred HcCCCHHHHHHHHHHHHHHccC--CHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HH
Confidence 9999999999999999999974 67889999999999999999986468999999999999998753 3344443 78
Q ss_pred hHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHH
Q psy15592 163 LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVEN 242 (294)
Q Consensus 163 ~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~ 242 (294)
+++.+..++.. .+..+...++++|.+|+...++.+..+.. .|+++.|+.++. +.+.++++.
T Consensus 193 ~l~~L~~~l~~------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~------~~~~~v~~~ 253 (450)
T 2jdq_A 193 CLNVLSWLLFV------------SDTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLM------HNDYKVVSP 253 (450)
T ss_dssp GHHHHHHHTTC------------CCHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTT------CSCHHHHHH
T ss_pred HHHHHHHHHcc------------CCHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHC------CCchhHHHH
Confidence 88899988841 12568899999999999987778888887 699999999994 345689999
Q ss_pred HHHHHHHhccCC
Q psy15592 243 CVCILRNLSFRC 254 (294)
Q Consensus 243 a~~~L~nLs~~~ 254 (294)
|+.+|.||+.+.
T Consensus 254 a~~~L~~l~~~~ 265 (450)
T 2jdq_A 254 ALRAVGNIVTGD 265 (450)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHhhCC
Confidence 999999999875
No 34
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.83 E-value=8.2e-20 Score=179.45 Aligned_cols=222 Identities=23% Similarity=0.267 Sum_probs=188.4
Q ss_pred chhHHHhhhcccc--ccccccccccC-CCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhh
Q psy15592 10 GSQEEFYSPSLNK--KCRNSSLRWRD-PNLTEVISFLSNP-NNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL 85 (294)
Q Consensus 10 ~~q~~al~~l~~l--~~~~~~~i~~~-g~i~~Lv~lL~s~-~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL 85 (294)
..|+.++..|.++ ++.++..++.. |+++.|+++|+++ +++++..|+.+|.+++. +.+++..+.+.|+++.|+.+|
T Consensus 29 ~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL 107 (644)
T 2z6h_A 29 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKML 107 (644)
T ss_dssp HHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHHHHHHHHTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCHHHHHHHH
Confidence 4577888888877 34455555554 8899999999865 89999999999999996 467999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc-cchhhHHHHhhChH
Q psy15592 86 GHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSIIDDGLQ 164 (294)
Q Consensus 86 ~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~r~~i~~~g~i 164 (294)
+++++.++..|+++|+||+.+ ++..+..+++.|+++.|+++|++. +..++..++.+|++|+. ++++|..+.+.|++
T Consensus 108 ~~~~~~v~~~A~~aL~nL~~~--~~~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v 184 (644)
T 2z6h_A 108 GSPVDSVLFYAITTLHNLLLH--QEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGP 184 (644)
T ss_dssp TCSSHHHHHHHHHHHHHHHHH--STTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHhC--cchhHHHHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHhcCcHHHHHHHHcCCh
Confidence 999999999999999999973 567788888999999999999884 78889899999999996 67999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHH
Q psy15592 165 VVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCV 244 (294)
Q Consensus 165 ~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~ 244 (294)
+.|+.++... ....+++.++++|+||+... .+|..+.+ .|+++.|+.++.. .+.++++.++
T Consensus 185 ~~Lv~lL~~~-----------~~~~~~~~a~~~L~nLs~~~-~~~~~l~~-~g~l~~L~~ll~~------~~~~~~~~a~ 245 (644)
T 2z6h_A 185 QALVNIMRTY-----------TYEKLLWTTSRVLKVLSVCS-SNKPAIVE-AGGMQALGLHLTD------PSQRLVQNCL 245 (644)
T ss_dssp HHHHHHHTTC-----------CCHHHHHHHHHHHHHHTTCT-THHHHHHH-TTHHHHHHTTTTC------SCHHHHHHHH
T ss_pred HHHHHHHHcC-----------ChHHHHHHHHHHHHHHhcCc-ccHHHHHH-CCCHHHHHHHHhc------CCHHHHHHHH
Confidence 9999999421 11457889999999999765 58888988 6999999999853 2467889999
Q ss_pred HHHHHhccCC
Q psy15592 245 CILRNLSFRC 254 (294)
Q Consensus 245 ~~L~nLs~~~ 254 (294)
++|+||+...
T Consensus 246 ~~L~nL~~~~ 255 (644)
T 2z6h_A 246 WTLRNLSDAA 255 (644)
T ss_dssp HHHHHHGGGC
T ss_pred HHHHHHhhcc
Confidence 9999998654
No 35
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.82 E-value=7e-19 Score=164.07 Aligned_cols=221 Identities=20% Similarity=0.144 Sum_probs=186.4
Q ss_pred hhHHHhhhccccc----cccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC
Q psy15592 11 SQEEFYSPSLNKK----CRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG 86 (294)
Q Consensus 11 ~q~~al~~l~~l~----~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~ 86 (294)
.+..++++|.++. ...+..++ .|+++.|+++|++++++++..++++|.+++...++.+..+...|+++.|+.+|.
T Consensus 166 v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 244 (450)
T 2jdq_A 166 MTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244 (450)
T ss_dssp HHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC
Confidence 4566667777762 22333333 789999999999999999999999999999766678888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc-cchhhHHHHhhChHH
Q psy15592 87 HESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSIIDDGLQV 165 (294)
Q Consensus 87 s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~r~~i~~~g~i~ 165 (294)
+++++++..|+++|++++.+ ++..+..+.+.|+++.|+.+|.+ .+..++..++++|.|++. +++.+..+++.|+++
T Consensus 245 ~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~L~~ll~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 245 HNDYKVVSPALRAVGNIVTG--DDIQTQVILNCSALQSLLHLLSS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFP 321 (450)
T ss_dssp CSCHHHHHHHHHHHHHHTTS--CHHHHHHHHTTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred CCchhHHHHHHHHHHHHhhC--ChHHHHHHHHCccHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 99999999999999999974 67777788899999999999988 589999999999999996 557778888899999
Q ss_pred HHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhcc-CHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHH
Q psy15592 166 VVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSA-GEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCV 244 (294)
Q Consensus 166 ~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~-~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~ 244 (294)
.++.++.. .+..+++.++++|.|++.. +++..+.+.+ .|+++.|+.++.. .+.++++.|+
T Consensus 322 ~L~~~l~~------------~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~------~~~~v~~~a~ 382 (450)
T 2jdq_A 322 ALISILQT------------AEFRTRKEAAWAITNATSGGSAEQIKYLVE-LGCIKPLCDLLTV------MDSKIVQVAL 382 (450)
T ss_dssp HHHHHHHH------------SCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HTCHHHHHHGGGS------SCHHHHHHHH
T ss_pred HHHHHHhc------------CCHHHHHHHHHHHHHHHcCCCHHHHHHHHH-CCCHHHHHHHhcC------CCHHHHHHHH
Confidence 99999842 1256899999999999875 5566677777 6999999999952 3568999999
Q ss_pred HHHHHhccCC
Q psy15592 245 CILRNLSFRC 254 (294)
Q Consensus 245 ~~L~nLs~~~ 254 (294)
.+|.+++...
T Consensus 383 ~aL~~l~~~~ 392 (450)
T 2jdq_A 383 NGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999765
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.78 E-value=1.3e-18 Score=174.65 Aligned_cols=222 Identities=22% Similarity=0.255 Sum_probs=186.6
Q ss_pred chhHHHhhhcccc--ccccccccccC-CCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhh
Q psy15592 10 GSQEEFYSPSLNK--KCRNSSLRWRD-PNLTEVISFLSNP-NNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL 85 (294)
Q Consensus 10 ~~q~~al~~l~~l--~~~~~~~i~~~-g~i~~Lv~lL~s~-~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL 85 (294)
..|+.|+.+|.++ .+.++..+... |+++.|+++|+++ +++++..|+.+|.+++. +.+++..+.+.|+|+.|+.+|
T Consensus 165 ~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL 243 (780)
T 2z6g_A 165 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNML 243 (780)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHH
Confidence 4578888888887 34556666644 8899999999754 89999999999999996 577899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc-cchhhHHHHhhChH
Q psy15592 86 GHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSIIDDGLQ 164 (294)
Q Consensus 86 ~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~r~~i~~~g~i 164 (294)
+++++.++..|+++|.||+.+ .+..+..+++.|+++.|+++|++ .+..++..++.+|++++. +++++..+.+.|++
T Consensus 244 ~~~~~~v~~~A~~aL~nLa~~--~~~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i 320 (780)
T 2z6g_A 244 GSPVDSVLFHAITTLHNLLLH--QEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGP 320 (780)
T ss_dssp TCSCHHHHHHHHHHHHHHHHH--STTHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHH
T ss_pred cCCCHHHHHHHHHHHHHHhCC--ChhhHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCH
Confidence 999999999999999999973 56778888899999999999988 588999999999999986 57899999999999
Q ss_pred HHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHH
Q psy15592 165 VVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCV 244 (294)
Q Consensus 165 ~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~ 244 (294)
+.|+.++.. +. .....+.++.+|++|+... .++..+.+ .|+++.|+.++.. .+.++++.|+
T Consensus 321 ~~Lv~lL~~--~~---------~~~~~~~a~~aL~~Ls~~~-~~~~~i~~-~g~l~~Ll~lL~~------~~~~~~~~a~ 381 (780)
T 2z6g_A 321 QALVNIMRT--YT---------YEKLLWTTSRVLKVLSVCS-SNKPAIVE-AGGMQALGLHLTD------PSQRLVQNCL 381 (780)
T ss_dssp HHHHHHHTT--CC---------CHHHHHHHHHHHHHHHTST-THHHHHHH-TTHHHHHGGGTTC------SCHHHHHHHH
T ss_pred HHHHHHHhc--CC---------HHHHHHHHHHHHHHhhcCh-HHHHHHHH-hchHHHHHHHHcC------CchHHHHHHH
Confidence 999999842 11 1346778999999999765 57888888 6999999999843 2456788888
Q ss_pred HHHHHhccCC
Q psy15592 245 CILRNLSFRC 254 (294)
Q Consensus 245 ~~L~nLs~~~ 254 (294)
++|+||+...
T Consensus 382 ~~L~~L~~~~ 391 (780)
T 2z6g_A 382 WTLRNLSDAA 391 (780)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhccc
Confidence 8888887655
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.6e-17 Score=163.12 Aligned_cols=205 Identities=15% Similarity=0.141 Sum_probs=160.4
Q ss_pred cccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHH---HHHHHHHHHHH
Q psy15592 26 NSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPD---VFRNACGALRN 102 (294)
Q Consensus 26 ~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~---v~~~a~~aL~n 102 (294)
++..+.+.|+++.|+.+++++++.+++.|+++|.|++ .+.++|..+++.||+++|+.+|.++... ++..|+.+|.+
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr 527 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR 527 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 6778899999999999999999999999999999999 4689999999999999999999988654 89999999999
Q ss_pred hhcCCCChhhHHHHHh---cCChHHHHHHhccCCC-------------HHHHHHHHHHHHHhcccc-----hhhHHHHhh
Q psy15592 103 LSYGRQNDENKRAIKN---AGGIPLLINLLRKTAD-------------AEVKELVTGVLWNLSSCE-----DLKKSIIDD 161 (294)
Q Consensus 103 Ls~~~~~~~~k~~i~~---~g~i~~Lv~lL~~~~~-------------~~~~~~a~~~L~nLs~~~-----~~r~~i~~~ 161 (294)
|+. +......+.. .|+|++|+.+|..++. ..-+..++.+|.|||+.+ +.|..|+++
T Consensus 528 Lli---s~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~ 604 (778)
T 3opb_A 528 MLI---FTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST 604 (778)
T ss_dssp HHH---TSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS
T ss_pred HHh---cCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh
Confidence 996 2222333321 4999999999973111 123778999999999986 458889985
Q ss_pred -ChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHH-HHHHhh-----cCcHHHHHHHHHHhHhhcC
Q psy15592 162 -GLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYAR-KKLREC-----EGLIDSLLYVVKSAIEKSN 234 (294)
Q Consensus 162 -g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r-~~~~~~-----~g~i~~Lv~lL~~~~~~~~ 234 (294)
|+++.+..++. +. ...+++.|+.+++||+.+.+ .+ +.+.+. .+.++.|+.++. .
T Consensus 605 ~ga~~~L~~LL~--s~----------n~~VrrAA~elI~NL~~~~e-~i~~k~~~~~~~~~~~rL~lLV~Ll~------s 665 (778)
T 3opb_A 605 KVYWSTIENLML--DE----------NVPLQRSTLELISNMMSHPL-TIAAKFFNLENPQSLRNFNILVKLLQ------L 665 (778)
T ss_dssp HHHHHHHHHGGG--CS----------SHHHHHHHHHHHHHHHTSGG-GTGGGTSCCSSHHHHHHHHHHHHGGG------C
T ss_pred cCHHHHHHHHHh--CC----------CHHHHHHHHHHHHHHhCCcH-HHHHHHHhhcCchhhccHHHHHHHHc------C
Confidence 99999999994 21 13589999999999998654 43 233211 123778888884 2
Q ss_pred CCcchHHHHHHHHHHhccC
Q psy15592 235 IGNKSVENCVCILRNLSFR 253 (294)
Q Consensus 235 ~~~~~~e~a~~~L~nLs~~ 253 (294)
.|.++++.|.++|.|++..
T Consensus 666 ~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 666 SDVESQRAVAAIFANIATT 684 (778)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCC
Confidence 3579999999999999643
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.70 E-value=7.5e-17 Score=158.46 Aligned_cols=224 Identities=13% Similarity=0.079 Sum_probs=174.6
Q ss_pred cchhHHHhhhcccc--ccccccccccCCCHHHHHHhhcCCCHH---HHHHHHHHHHHhhcCCcccHHHHHh---cCChHH
Q psy15592 9 TGSQEEFYSPSLNK--KCRNSSLRWRDPNLTEVISFLSNPNNV---IKANAAAYLQHLCYMDDPNKQKTRS---LGGIPP 80 (294)
Q Consensus 9 ~~~q~~al~~l~~l--~~~~~~~i~~~g~i~~Lv~lL~s~~~~---~~~~a~~~L~nL~~~~~~~k~~i~~---~g~i~~ 80 (294)
.+.|+.+++++.++ +.++|..+++.|++++|+.+|.+++.. .+..|+.+|.+++-. .+....+.. .|+|++
T Consensus 471 ~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis-~np~~~f~~~~~~~aI~p 549 (778)
T 3opb_A 471 PNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIF-TNPGLIFKKYSALNAIPF 549 (778)
T ss_dssp HHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHT-SCHHHHSSSSCSTTHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc-CCHHHHcCCCccccchHH
Confidence 46788999999998 678999999999999999999987654 899999999998843 233333321 389999
Q ss_pred HHHhhCC--CC-----------H-HHHHHHHHHHHHhhcCCCC----hhhHHHHHhc-CChHHHHHHhccCCCHHHHHHH
Q psy15592 81 LVKLLGH--ES-----------P-DVFRNACGALRNLSYGRQN----DENKRAIKNA-GGIPLLINLLRKTADAEVKELV 141 (294)
Q Consensus 81 Lv~lL~s--~~-----------~-~v~~~a~~aL~nLs~~~~~----~~~k~~i~~~-g~i~~Lv~lL~~~~~~~~~~~a 141 (294)
|+.+|.. +. + --+..|+.+|.||+.. + ++.+..|++. |+++.|..+|.+ .+..+++.+
T Consensus 550 Lv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~--~~n~~E~~r~~Ii~~~ga~~~L~~LL~s-~n~~VrrAA 626 (778)
T 3opb_A 550 LFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS--ETSDGEEVCKHIVSTKVYWSTIENLMLD-ENVPLQRST 626 (778)
T ss_dssp HHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC--CSHHHHHHHHHHHHSHHHHHHHHHGGGC-SSHHHHHHH
T ss_pred HHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC--CcccchHHHHHHHHhcCHHHHHHHHHhC-CCHHHHHHH
Confidence 9999983 21 1 1277999999999983 3 2457778875 999999999988 588999999
Q ss_pred HHHHHHhcccchhh-HHHHhh------ChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHh
Q psy15592 142 TGVLWNLSSCEDLK-KSIIDD------GLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRE 214 (294)
Q Consensus 142 ~~~L~nLs~~~~~r-~~i~~~------g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~ 214 (294)
+++++||+.+++.+ ..+.+. +.++.|+.++. ..+..+++.|+|+|.|++...+...+.+.+
T Consensus 627 ~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~------------s~D~~~r~AAagALAnLts~~~~ia~~ll~ 694 (778)
T 3opb_A 627 LELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQ------------LSDVESQRAVAAIFANIATTIPLIAKELLT 694 (778)
T ss_dssp HHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGG------------CSCHHHHHHHHHHHHHHHHHCHHHHHHHTT
T ss_pred HHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHc------------CCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 99999999988865 355432 23778888883 123679999999999998766667677776
Q ss_pred hcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhcc
Q psy15592 215 CEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSF 252 (294)
Q Consensus 215 ~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~ 252 (294)
..++++.|+.++... ..++.++..++.++.||+.
T Consensus 695 ~~~gi~~Ll~lL~~~----~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 695 KKELIENAIQVFADQ----IDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp CHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHH
Confidence 458999999999753 2357899999999999994
No 39
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.39 E-value=3.5e-12 Score=126.11 Aligned_cols=207 Identities=9% Similarity=0.067 Sum_probs=156.1
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy15592 33 DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVK-LLGHESPDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~-lL~s~~~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
...+.++++.|+|++++.|..|+.+|.+++ .+++.+..+...|+|.+++. +|.+++.+++..|+++|+||+.. ...+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~-~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~-~g~d 110 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIV-QDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE-EEAD 110 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH-SCHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHH-cCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh-cCch
Confidence 345677889999999999999999999999 57899999999999987655 78888999999999999999962 2467
Q ss_pred hHHHHHhcCChHHHHHHhccC-------------CC-------HHHHHHHHHHHHHhccc-chhhHHHHhhChHHHHHHh
Q psy15592 112 NKRAIKNAGGIPLLINLLRKT-------------AD-------AEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVNHI 170 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~~-------------~~-------~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~L~~l 170 (294)
.+..+++.|++++|..+++.. .. ..+..+++.+||+|+.. ++....+...++++.++..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 788899999999999998541 00 13556788999999875 4667788888888777766
Q ss_pred hccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHh
Q psy15592 171 IIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNL 250 (294)
Q Consensus 171 l~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL 250 (294)
+.... .....++..++.||.+++..+.+..+.+.+ .|....+..++. ... .+...+-.++++|+|+
T Consensus 191 L~~~~---------~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-~~~~~~~~~ll~-~~~---~~~~~~~la~giL~Ni 256 (684)
T 4gmo_A 191 LISAD---------IAPQDIYEEAISCLTTLSEDNLKVGQAITD-DQETHVYDVLLK-LAT---GTDPRAVMACGVLHNV 256 (684)
T ss_dssp HHHHC---------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-CCSSCHHHHHHH-HHH---SSCTTHHHHHHHHHHH
T ss_pred HHhcC---------CCcHHHHHHHHHHHHHHhccCHHHHHHHHh-cchHHHHHHHHH-Hhc---CCcHHHHHHHHHHHhH
Confidence 63211 112468899999999999999888888887 454433222222 111 1224566789999998
Q ss_pred ccCCc
Q psy15592 251 SFRCQ 255 (294)
Q Consensus 251 s~~~~ 255 (294)
....+
T Consensus 257 ~~~~~ 261 (684)
T 4gmo_A 257 FTSLQ 261 (684)
T ss_dssp HHHHT
T ss_pred hhhhh
Confidence 76553
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.23 E-value=3.1e-10 Score=109.28 Aligned_cols=211 Identities=15% Similarity=0.165 Sum_probs=167.4
Q ss_pred cccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc-cHHHHHhc-CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy15592 30 RWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDP-NKQKTRSL-GGIPPLVKLLGHESPDVFRNACGALRNLSYGR 107 (294)
Q Consensus 30 i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~-~k~~i~~~-g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~ 107 (294)
+.+.+.|+.|+.+|.+++..+|.++...|..++...++ ++..|... +||+.|+.+|.++.+.++..++..|.+|+.+
T Consensus 118 ~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~- 196 (651)
T 3grl_A 118 IKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS- 196 (651)
T ss_dssp HHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT-
T ss_pred HcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC-
Confidence 34578899999999999999999999999999877766 88888866 9999999999999999999999999999985
Q ss_pred CChhhHHHHHhcCChHHHHHHhccC---CCHHHHHHHHHHHHHhccc-chhhHHHHhhChHHHHHHhhccCCCCCCCCCC
Q psy15592 108 QNDENKRAIKNAGGIPLLINLLRKT---ADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAG 183 (294)
Q Consensus 108 ~~~~~k~~i~~~g~i~~Lv~lL~~~---~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~ 183 (294)
+.+.+..+.-.|+++.|+.+++.. ....+...++.+|.||... +.|+..+.+.|.++.|..++.. +.+
T Consensus 197 -n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~--~~~----- 268 (651)
T 3grl_A 197 -NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEV--GDE----- 268 (651)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCC--CSC-----
T ss_pred -CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCC--Ccc-----
Confidence 787788888889999999999872 1346778899999999875 5788899999999888888842 111
Q ss_pred ccch-hhHHHh---HhHHHHhhhcc------CHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccC
Q psy15592 184 ETCW-STIFRN---TSGVLRNASSA------GEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFR 253 (294)
Q Consensus 184 ~~~~-~~v~~~---a~~~L~nLa~~------~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~ 253 (294)
...| .....| +..+++-|... ...+++.+.+ .|+++.|++++.+ ...+..++..|+.++..+...
T Consensus 269 ~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~-~g~l~~Ll~ll~~----~~~p~~i~~~Al~tla~~irg 343 (651)
T 3grl_A 269 NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ-CGLLQQLCTILMA----TGVPADILTETINTVSEVIRG 343 (651)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-TTHHHHHHHHHTC----SSCCHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHcc----CCCCHHHHHHHHHHHHHHHhC
Confidence 0111 112333 66666766543 3357888999 5999999999853 233567889999999998876
Q ss_pred C
Q psy15592 254 C 254 (294)
Q Consensus 254 ~ 254 (294)
+
T Consensus 344 N 344 (651)
T 3grl_A 344 C 344 (651)
T ss_dssp C
T ss_pred C
Confidence 5
No 41
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.22 E-value=1e-10 Score=112.54 Aligned_cols=221 Identities=14% Similarity=0.077 Sum_probs=162.8
Q ss_pred ccccccccccccCCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCcc-----------------cHHH-HHhcCChHH
Q psy15592 21 NKKCRNSSLRWRDPNLTEVISFLSN--PNNVIKANAAAYLQHLCYMDDP-----------------NKQK-TRSLGGIPP 80 (294)
Q Consensus 21 ~l~~~~~~~i~~~g~i~~Lv~lL~s--~~~~~~~~a~~~L~nL~~~~~~-----------------~k~~-i~~~g~i~~ 80 (294)
.+...++.. +.+++++.|+..|+. .|.++...+..+|.++...+++ +... +.+.++|+.
T Consensus 48 ~~sk~y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~ 126 (651)
T 3grl_A 48 SLSKKYRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTL 126 (651)
T ss_dssp HTTTTTTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHH
T ss_pred HHHHHhHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHH
Confidence 333344443 368899999999975 5888899999999886543332 1112 235678999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCCChh-hHHHHHh-cCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchh-hHH
Q psy15592 81 LVKLLGHESPDVFRNACGALRNLSYGRQNDE-NKRAIKN-AGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDL-KKS 157 (294)
Q Consensus 81 Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~-~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~-r~~ 157 (294)
|+.+|++++-.++..++.+|..|+.+ .+. ++..|.. .+||+.|+.+|++ ..+.++-.++.+|.+|+.+... +..
T Consensus 127 Ll~lL~~~df~vR~~alqlL~~L~~~--r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~n~~iQkl 203 (651)
T 3grl_A 127 LLSLLEEFDFHVRWPGVKLLTSLLKQ--LGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRSNGAIQKI 203 (651)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHH--SHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHhc--CcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999974 444 7888885 5999999999988 4889999999999999987655 555
Q ss_pred HHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCc
Q psy15592 158 IIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGN 237 (294)
Q Consensus 158 i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~ 237 (294)
+.-+|+++.+..++....+. .-..++.-|..+|.||...++.+++.+++ .|+++.|..+++...+...-++
T Consensus 204 VAFEnaFe~Lf~Ii~~Eg~~--------~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE-t~~i~~L~~LL~~~~~~~~W~~ 274 (651)
T 3grl_A 204 VAFENAFERLLDIITEEGNS--------DGGIVVEDCLILLQNLLKNNNSNQNFFKE-GSYIQRMKPWFEVGDENSGWSA 274 (651)
T ss_dssp HHHTTHHHHHHHHHHHHTGG--------GSHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCGGGGGGGGCCCSCSSCCCH
T ss_pred HHHhccHHHHHHHHHhcCCC--------ccchhHHHHHHHHHHHHhcCHHHHHHHHH-cCCHHHHHHHhCCCccccccHH
Confidence 55689999999999632211 11347788889999999999999999999 5999999999853211000011
Q ss_pred chHHH---HHHHHHHhccCC
Q psy15592 238 KSVEN---CVCILRNLSFRC 254 (294)
Q Consensus 238 ~~~e~---a~~~L~nLs~~~ 254 (294)
....+ ++.+++-|+...
T Consensus 275 Qk~~N~~~~L~iIrlLv~~~ 294 (651)
T 3grl_A 275 QKVTNLHLMLQLVRVLVSPN 294 (651)
T ss_dssp HHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 22333 566666666543
No 42
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.94 E-value=6.4e-09 Score=102.77 Aligned_cols=171 Identities=14% Similarity=0.090 Sum_probs=133.1
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHH-HhccCCCHHHHHHHHHHHHHhccc--c
Q psy15592 76 GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLIN-LLRKTADAEVKELVTGVLWNLSSC--E 152 (294)
Q Consensus 76 g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~~a~~~L~nLs~~--~ 152 (294)
..|.|+++.|++++++.+..||++|.||+. ++..+..+...|++..++. +|.+ ++.+++..+.++|+||+.. .
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~---~~~~~~l~~~~~~v~~ll~~lL~D-~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ---DAKCRKLLLREQVVHIVLTETLTD-NNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHTTTTC-SCHHHHHHHHHHHHHHHHHSCH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc---CcHHHHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCc
Confidence 467888899999999999999999999996 8889999999999988655 5666 5999999999999999864 5
Q ss_pred hhhHHHHhhChHHHHHHhhccCC----CCC--CCCCC---ccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHH
Q psy15592 153 DLKKSIIDDGLQVVVNHIIIPHS----GWD--PVSAG---ETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLL 223 (294)
Q Consensus 153 ~~r~~i~~~g~i~~L~~ll~~~s----~~~--~~~~~---~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv 223 (294)
+.+..+++.|+++.|..++.... ... ..... ...-..+..+++.+|++|+..+.+....+.. .++++.|+
T Consensus 110 d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~l~ 188 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILRLL 188 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHHHH
Confidence 88999999999988877764210 000 00000 0111345678889999999888888888888 68999999
Q ss_pred HHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 224 YVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 224 ~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
.+|.+. ...+.+++..|...|.+|+..+
T Consensus 189 ~~L~~~---~~~~~~v~~~a~~~L~~ls~dn 216 (684)
T 4gmo_A 189 FRLISA---DIAPQDIYEEAISCLTTLSEDN 216 (684)
T ss_dssp HHHHHH---CCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhc---CCCcHHHHHHHHHHHHHHhccC
Confidence 998643 2334579999999999998765
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.78 E-value=3.4e-07 Score=76.32 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=67.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHH
Q psy15592 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKS 157 (294)
Q Consensus 78 i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~ 157 (294)
++.|+.+|.++++.++..|+.+|..+. + ...++.|+.++.+ +++.++..++.+|..+..
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~----~---------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~------- 141 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIG----D---------ERAVEPLIKALKD-EDWFVRIAAAFALGEIGD------- 141 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----C---------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC----c---------HHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCC-------
Confidence 445555555555555555555554443 1 1345566666655 366666666666666532
Q ss_pred HHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCc
Q psy15592 158 IIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGN 237 (294)
Q Consensus 158 i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~ 237 (294)
...++.+..++.. .+..+...+..+|..+.. ...++.|..++.. .++
T Consensus 142 ---~~~~~~L~~~l~d------------~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d------~~~ 188 (211)
T 3ltm_A 142 ---ERAVEPLIKALKD------------EDGWVRQSAADALGEIGG------------ERVRAAMEKLAET------GTG 188 (211)
T ss_dssp ---GGGHHHHHHHTTC------------SSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHH------CCH
T ss_pred ---HHHHHHHHHHHcC------------CCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhC------CCH
Confidence 2345556655521 123466677777766632 2345667777743 346
Q ss_pred chHHHHHHHHHHhccCC
Q psy15592 238 KSVENCVCILRNLSFRC 254 (294)
Q Consensus 238 ~~~e~a~~~L~nLs~~~ 254 (294)
.++..|..+|.++....
T Consensus 189 ~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 189 FARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 89999999999887666
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.77 E-value=3.4e-07 Score=75.78 Aligned_cols=153 Identities=16% Similarity=0.123 Sum_probs=86.4
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhH
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENK 113 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k 113 (294)
+.++.|+++|.++++.++..|+.+|..+.. ...++.|+.+|.++++.++..|+++|..+. ++
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~~--- 106 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIG----DE--- 106 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----CG---
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----cH---
Confidence 345555555555555555555555554431 124556666666666666666666666554 21
Q ss_pred HHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHh
Q psy15592 114 RAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRN 193 (294)
Q Consensus 114 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~ 193 (294)
.+++.|+.++.+ .++.++..++.+|..+.. ...++.+..++.. .+..+...
T Consensus 107 ------~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d------------~~~~vr~~ 157 (201)
T 3ltj_A 107 ------RAVEPLIKALKD-EDWFVRIAAAFALGEIGD----------ERAVEPLIKALKD------------EDGWVRQS 157 (201)
T ss_dssp ------GGHHHHHHHTTC-SSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTC------------SSHHHHHH
T ss_pred ------HHHHHHHHHHcC-CCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcC------------CCHHHHHH
Confidence 245666666655 366666666666666532 2345556656521 11346666
Q ss_pred HhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhc
Q psy15592 194 TSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251 (294)
Q Consensus 194 a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 251 (294)
+..+|..+.. ...++.|..++.. .++.+++.|..+|..+.
T Consensus 158 A~~aL~~~~~------------~~~~~~L~~~l~d------~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 158 AADALGEIGG------------ERVRAAMEKLAET------GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHCS------------HHHHHHHHHHHHH------CCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCc------------hhHHHHHHHHHhC------CCHHHHHHHHHHHHHHH
Confidence 7766666631 2345666666642 24578888888887764
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.73 E-value=3.3e-07 Score=76.48 Aligned_cols=156 Identities=17% Similarity=0.132 Sum_probs=124.7
Q ss_pred cCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy15592 32 RDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 32 ~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
..+.++.|+++|+++++.+|..|+..|..+.. ..+++.|+.+|.++++.++..|+.+|..+. +
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----~-- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----D-- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC----C--
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC----C--
Confidence 45679999999999999999999999998652 256899999999999999999999999887 3
Q ss_pred hHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHH
Q psy15592 112 NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIF 191 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~ 191 (294)
.++++.|+++|.+ .++.++..++.+|..+.. ...++.+..++.. .+..+.
T Consensus 80 -------~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d------------~~~~vr 129 (211)
T 3ltm_A 80 -------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD------------EDWFVR 129 (211)
T ss_dssp -------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC------------SSHHHH
T ss_pred -------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhC------------CCHHHH
Confidence 2467899999988 599999999999998854 2466777777731 125688
Q ss_pred HhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhcc
Q psy15592 192 RNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSF 252 (294)
Q Consensus 192 ~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~ 252 (294)
..++.+|.++.. ...++.|..++. +.++.++..++.+|..+..
T Consensus 130 ~~a~~aL~~~~~------------~~~~~~L~~~l~------d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 130 IAAAFALGEIGD------------ERAVEPLIKALK------DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHHCC------------GGGHHHHHHHTT------CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCC------------HHHHHHHHHHHc------CCCHHHHHHHHHHHHHhCc
Confidence 889998888743 345778888873 4456899999999988753
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.69 E-value=5.5e-07 Score=74.50 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=121.8
Q ss_pred cccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCC
Q psy15592 30 RWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQN 109 (294)
Q Consensus 30 i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~ 109 (294)
....+..+.++++|+++++.+|..|+.+|..+.. ...++.|+.+|.++++.++..|+.+|..+. +
T Consensus 10 ~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~----~ 74 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----D 74 (201)
T ss_dssp CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C
T ss_pred ccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----C
Confidence 3456778999999999999999999999998662 245899999999999999999999998886 3
Q ss_pred hhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhh
Q psy15592 110 DENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWST 189 (294)
Q Consensus 110 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~ 189 (294)
+ .+++.|+.+|.+ +++.++..++.+|..+.. ...++.+..++.. .+..
T Consensus 75 ~---------~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d------------~~~~ 122 (201)
T 3ltj_A 75 E---------RAVEPLIKALKD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD------------EDWF 122 (201)
T ss_dssp G---------GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC------------SSHH
T ss_pred H---------HHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcC------------CCHH
Confidence 2 468899999988 599999999999998754 2466777777731 1256
Q ss_pred HHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHh
Q psy15592 190 IFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNL 250 (294)
Q Consensus 190 v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL 250 (294)
+...++.+|.++.. ...++.|..++. +.++.++..|+.+|..+
T Consensus 123 vr~~a~~aL~~~~~------------~~~~~~L~~~l~------d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 123 VRIAAAFALGEIGD------------ERAVEPLIKALK------DEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHHHHHHTC------------GGGHHHHHHHTT------CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC------------HHHHHHHHHHHc------CCCHHHHHHHHHHHHHh
Confidence 88889988888753 355777777773 33457888888777653
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.49 E-value=6.3e-06 Score=71.64 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=63.4
Q ss_pred cCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy15592 32 RDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 32 ~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
+.+.++.|++.|.++++.+|..|+.+|.++. ++ +.++.|+.+|.++++.++..|+.+|..+.. .+.
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~---~~~ 86 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRG--GQ---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKI---CKK 86 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC--CH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCC---CTT
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccC--Cc---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---ccc
Confidence 4567888888888888888888888888776 11 246777888888888888888888877763 211
Q ss_pred hHHHHHhcCChHHHHH-HhccCCCHHHHHHHHHHHHHhc
Q psy15592 112 NKRAIKNAGGIPLLIN-LLRKTADAEVKELVTGVLWNLS 149 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~~a~~~L~nLs 149 (294)
.... .++.|.. ++.+ .++.++..++.+|.++.
T Consensus 87 ~~~~-----l~~~L~~~~~~d-~~~~vr~~a~~aL~~l~ 119 (280)
T 1oyz_A 87 CEDN-----VFNILNNMALND-KSACVRATAIESTAQRC 119 (280)
T ss_dssp THHH-----HHHHHHHHHHHC-SCHHHHHHHHHHHHHHH
T ss_pred cchH-----HHHHHHHHHhcC-CCHHHHHHHHHHHHHHh
Confidence 1110 1122221 2233 46667777666666664
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.42 E-value=9.2e-06 Score=70.57 Aligned_cols=65 Identities=17% Similarity=0.078 Sum_probs=41.4
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhh
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLV-KLLGHESPDVFRNACGALRNLS 104 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv-~lL~s~~~~v~~~a~~aL~nLs 104 (294)
+.++.|+++|.++++.+|..|+.+|..+... .+.... .++.|. .++.++++.++..++.+|..+.
T Consensus 54 ~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~~~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~ 119 (280)
T 1oyz_A 54 DAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCEDN-----VFNILNNMALNDKSACVRATAIESTAQRC 119 (280)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 4678889999999999999999988887632 221111 122232 2345566667777777776665
No 49
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.05 E-value=2e-05 Score=76.29 Aligned_cols=192 Identities=15% Similarity=0.113 Sum_probs=128.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
.++.+.++|.++++.+|..|+.++.++...+++. +...+.++.|..+|.++++.++..|+.+|..++.. +++...
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~--~~~~~~ 196 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISES--HPNSNL 196 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS--CCSCCS
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh--CCCccc
Confidence 3566889999999999999999999998655543 23345688999999999999999999999999963 332210
Q ss_pred HHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhH
Q psy15592 115 AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNT 194 (294)
Q Consensus 115 ~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a 194 (294)
.-...+.+..|+..+.+ .++-.+...+.+|..+...++.. ...+++.+..++. +.+..|...|
T Consensus 197 ~~l~~~~~~~Ll~~l~~-~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~------------~~~~~V~~ea 259 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNE-CTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLS------------HANSAVVLSA 259 (591)
T ss_dssp CCCHHHHHHHHHHHHHH-CCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSC------------SSTTHHHHHH
T ss_pred hhccHHHHHHHHHcCCC-CCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHc------------CCChHHHHHH
Confidence 00112345677777776 47778888888888776433210 1233444544442 1224688999
Q ss_pred hHHHHhhhcc---CHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCccc
Q psy15592 195 SGVLRNASSA---GEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQEV 257 (294)
Q Consensus 195 ~~~L~nLa~~---~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~ 257 (294)
++++..+... +++..+.+. ..+.+.|+.++. .++.++-.|+.+|..+..+..+.
T Consensus 260 ~~~i~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~~-------~d~~vr~~aL~~l~~i~~~~p~~ 316 (591)
T 2vgl_B 260 VKVLMKFLELLPKDSDYYNMLL--KKLAPPLVTLLS-------GEPEVQYVALRNINLIVQKRPEI 316 (591)
T ss_dssp HHHHHHSCCSCCBTTBSHHHHH--HHTHHHHHHHTT-------SCHHHHHHHHHHHHHHHHHCCST
T ss_pred HHHHHHHhhccCCCHHHHHHHH--HHHHHHHHHHhc-------CCccHHHHHHHHHHHHHHhChHH
Confidence 9999998641 222222222 244567776552 35689999999999988765433
No 50
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.95 E-value=9.2e-05 Score=74.44 Aligned_cols=202 Identities=16% Similarity=0.152 Sum_probs=129.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHh--cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRS--LGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~--~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
..++.++++++++++++|..|+.+|.++..... . .+.. ...++.++.++.+++++++..++.+|..++.. .++
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~--~-~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~--~~~ 248 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT--Q-ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV--RMD 248 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC--H-HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH--CHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc--H-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh--CHH
Confidence 346778888889999999999999988764322 1 1211 13578899999999999999999999999852 222
Q ss_pred h-HHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHh--hChHHHHHHhhccCC--------CCCCC
Q psy15592 112 N-KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIID--DGLQVVVNHIIIPHS--------GWDPV 180 (294)
Q Consensus 112 ~-k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~--~g~i~~L~~ll~~~s--------~~~~~ 180 (294)
. +..+ .+.++.++.++++ .++.++..++..+..++.....+..+.. ..+++.+...+. ++ +....
T Consensus 249 ~~~~~l--~~l~~~l~~~~~~-~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~-~~e~d~~~~~~d~~e 324 (852)
T 4fdd_A 249 RLLPHM--HNIVEYMLQRTQD-QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMK-YSDIDIILLKGDVEG 324 (852)
T ss_dssp HHGGGH--HHHHHHHHHHHTC-SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTS-CCHHHHHHHHC----
T ss_pred HHHHHH--HHHHHHHHHHccC-CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcC-CcHhHHHHhcCCccc
Confidence 1 1111 2466777888877 5899999999999999876644442211 245566666552 00 00000
Q ss_pred CCCc--c-chhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 181 SAGE--T-CWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 181 ~~~~--~-~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
...+ . ....+.+.+..+|..++...+ +..++.++.++..... +.+.++++.|+.+|.+++....
T Consensus 325 d~~~dd~~~~~~vr~~a~~~L~~la~~~~---------~~~~~~l~~~l~~~l~--~~~~~~R~aa~~alg~i~~~~~ 391 (852)
T 4fdd_A 325 GSGGDDTISDWNLRKCSAAALDVLANVYR---------DELLPHILPLLKELLF--HHEWVVKESGILVLGAIAEGCM 391 (852)
T ss_dssp --------CCCCHHHHHHHHHHHHHHHHG---------GGGHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHTTTTTH
T ss_pred ccccccccccchHHHHHHHHHHHHHHhcc---------HHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhcch
Confidence 0000 0 123467788888888875432 1233444444443332 3357899999999999987764
No 51
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.94 E-value=4.3e-05 Score=76.88 Aligned_cols=194 Identities=15% Similarity=0.025 Sum_probs=124.3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc--CChHHHHHhh-----------CC-----------CC
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL--GGIPPLVKLL-----------GH-----------ES 89 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~--g~i~~Lv~lL-----------~s-----------~~ 89 (294)
+.++.+...+++.+++++..|+.++..++. ....+..+... ..+|.++..+ .+ .+
T Consensus 256 ~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~-~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~ 334 (852)
T 4fdd_A 256 NIVEYMLQRTQDQDENVALEACEFWLTLAE-QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISD 334 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTT-STTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CC
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccccc
Confidence 356777788888999999999999999884 33344332211 2356666666 22 11
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHH
Q psy15592 90 PDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNH 169 (294)
Q Consensus 90 ~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ 169 (294)
-.++..|+.+|..|+. ... ..+. ...++.+..++.+ .+...++.++.+|.+++....-...-.-..+++.+..
T Consensus 335 ~~vr~~a~~~L~~la~---~~~--~~~~-~~l~~~l~~~l~~-~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~ 407 (852)
T 4fdd_A 335 WNLRKCSAAALDVLAN---VYR--DELL-PHILPLLKELLFH-HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQ 407 (852)
T ss_dssp CCHHHHHHHHHHHHHH---HHG--GGGH-HHHHHHHHHHHTC-SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH---hcc--HHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 2368888999999884 111 1122 2356777778877 5899999999999999875532111112456677777
Q ss_pred hhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHH-HHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHH
Q psy15592 170 IIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYAR-KKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILR 248 (294)
Q Consensus 170 ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r-~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~ 248 (294)
.+.. ....|...++++|.+++....... ... ..++++.|+..+. +.++++++.|+.+|.
T Consensus 408 ~l~d------------~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~------d~~~~vr~~a~~aL~ 467 (852)
T 4fdd_A 408 CLSD------------KKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRIL------DSNKRVQEAACSAFA 467 (852)
T ss_dssp HTTC------------SSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHT------CSSHHHHHHHHHHHH
T ss_pred HcCC------------CCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 7731 124688899999999986432110 000 1244555555552 335689999999999
Q ss_pred HhccCCc
Q psy15592 249 NLSFRCQ 255 (294)
Q Consensus 249 nLs~~~~ 255 (294)
+++....
T Consensus 468 ~l~~~~~ 474 (852)
T 4fdd_A 468 TLEEEAC 474 (852)
T ss_dssp HHHHHHG
T ss_pred HHHHHhh
Confidence 9997663
No 52
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.90 E-value=4e-06 Score=64.74 Aligned_cols=91 Identities=19% Similarity=0.272 Sum_probs=51.9
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhh
Q psy15592 33 DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN 112 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~ 112 (294)
...++.++.+|+++++.+|..|+.+|..+. +. .++.|+.+|+++++.++..|+++|.++. ++
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~--~~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~----~~-- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG--DE----------AFEPLLESLSNEDWRIRGAAAWIIGNFQ----DE-- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS--ST----------THHHHHHGGGCSCHHHHHHHHHHHGGGC----SH--
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC--ch----------HHHHHHHHHcCCCHHHHHHHHHHHHhcC----CH--
Confidence 445666777777777777766666665432 11 2567777777777777777777766665 22
Q ss_pred HHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhc
Q psy15592 113 KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS 149 (294)
Q Consensus 113 k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs 149 (294)
.+++.|+.+|++ .++.++..++.+|.++.
T Consensus 73 -------~a~~~L~~~L~d-~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 73 -------RAVEPLIKLLED-DSGFVRSGAARSLEQIG 101 (131)
T ss_dssp -------HHHHHHHHHHHH-CCTHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHcC-CCHHHHHHHHHHHHHhC
Confidence 135667777766 46677777777777664
No 53
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.87 E-value=0.00018 Score=68.37 Aligned_cols=186 Identities=14% Similarity=0.098 Sum_probs=109.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRA 115 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~ 115 (294)
++.+..+++++++.+|..|+.+|..++...+ . .......+|.+..++.+++..++..|+.+|..++.. .+. .
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~-~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~--~~~---~ 237 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLE-L--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL--LPQ---E 237 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC-H--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH--SCH---H
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-H--HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh--CCH---H
Confidence 4555666677888888888888888774322 1 122234567788888888888888888888887741 111 1
Q ss_pred HHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHh
Q psy15592 116 IKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTS 195 (294)
Q Consensus 116 i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~ 195 (294)
......++.+..++.+ .+..++..++.+|..++..-.. ......+++.+..++.. .+..+...+.
T Consensus 238 ~~~~~~~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d------------~~~~vr~~a~ 302 (588)
T 1b3u_A 238 DLEALVMPTLRQAAED-KSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKD------------CEAEVRAAAS 302 (588)
T ss_dssp HHHHHTHHHHHHHHTC-SSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTC------------SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCC------------CcHHHHHHHH
Confidence 1223466777778776 5788899998888888753211 12234567777777731 1245777788
Q ss_pred HHHHhhhccCH-HHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhc
Q psy15592 196 GVLRNASSAGE-YARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251 (294)
Q Consensus 196 ~~L~nLa~~~~-~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 251 (294)
.+|..++..-. ..+..... ..+++.+..++. +.+..++..++.+|..++
T Consensus 303 ~~l~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~------d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 303 HKVKEFCENLSADCRENVIM-SQILPCIKELVS------DANQHVKSALASVIMGLS 352 (588)
T ss_dssp HHHHHHHHTSCTTTHHHHHH-HTHHHHHHHHHT------CSCHHHHHHHHTTGGGGH
T ss_pred HHHHHHHHHhChhhhhhHHH-HHHHHHHHHHhc------CCCHHHHHHHHHHHHHHH
Confidence 88877764321 11100001 234444444441 223455666555555554
No 54
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.86 E-value=0.00012 Score=69.53 Aligned_cols=150 Identities=12% Similarity=0.134 Sum_probs=105.2
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhh
Q psy15592 33 DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN 112 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~ 112 (294)
...++.+..+++++++.+|..|+.+|..++...+. . ......+|.+..++.+++..++..++.+|..++. .. .
T Consensus 202 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~---~~-~ 274 (588)
T 1b3u_A 202 SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--E-DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQK---AV-G 274 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--H-HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHH---HH-C
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--H-HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH---Hh-C
Confidence 34578888999999999999999999888743221 1 1222357888889999999999999999999984 11 1
Q ss_pred HHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc--chhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhH
Q psy15592 113 KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC--EDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTI 190 (294)
Q Consensus 113 k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~--~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v 190 (294)
. .......++.++.++++ .++.++..+..+|..++.. ++.+....-..+++.+..++.. .+..+
T Consensus 275 ~-~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d------------~~~~v 340 (588)
T 1b3u_A 275 P-EITKTDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD------------ANQHV 340 (588)
T ss_dssp H-HHHHHTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC------------SCHHH
T ss_pred c-ccchhHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC------------CCHHH
Confidence 1 12234568999999988 5899999999999988753 2322223335567777777731 11346
Q ss_pred HHhHhHHHHhhhc
Q psy15592 191 FRNTSGVLRNASS 203 (294)
Q Consensus 191 ~~~a~~~L~nLa~ 203 (294)
...++.+|..++.
T Consensus 341 R~~a~~~l~~l~~ 353 (588)
T 1b3u_A 341 KSALASVIMGLSP 353 (588)
T ss_dssp HHHHHTTGGGGHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777753
No 55
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.80 E-value=3.1e-05 Score=59.67 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=74.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
.++.|+++|+++++.+|..|+++|.++.. + ..++.|+.+|+++++.++..|+++|..+. ++
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----~~---- 103 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIG----GE---- 103 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC----SH----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----cH----
Confidence 47999999999999999999999998762 1 24889999999999999999999999987 32
Q ss_pred HHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHh
Q psy15592 115 AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNL 148 (294)
Q Consensus 115 ~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nL 148 (294)
.+++.|+.++++ .++.++..+..+|..|
T Consensus 104 -----~a~~~L~~~l~d-~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 104 -----RVRAAMEKLAET-GTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHTTS-CCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHhC-CCHHHHHHHHHHHHhC
Confidence 257889999987 5889999999888653
No 56
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.77 E-value=8.5e-05 Score=63.21 Aligned_cols=186 Identities=12% Similarity=0.079 Sum_probs=124.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccH-HHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 37 TEVISFLSNPNNVIKANAAAYLQHLCYMDDPNK-QKTRSLGGIPPLVKLL-GHESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 37 ~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k-~~i~~~g~i~~Lv~lL-~s~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
+.+.+.+.+.+-..|..|+..|..+....+... ..+. ..++.|...+ ++.+..++..|+.+|..|+.+ -.+....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~--~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~-l~~~~~~ 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYG--ALVSALKKVITKDSNVVLVAMAGKCLALLAKG-LAKRFSN 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-HGGGGHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-HhhhHHH
Confidence 358888999999999999999988874322211 0111 2256778888 488999999999999999941 0111111
Q ss_pred HHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhH
Q psy15592 115 AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNT 194 (294)
Q Consensus 115 ~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a 194 (294)
. -...++.|+..+++ .+..++..+..+|..+....... .+++.+...+.. ....+...+
T Consensus 95 ~--~~~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~~------------~~~~vr~~~ 153 (242)
T 2qk2_A 95 Y--ASACVPSLLEKFKE-KKPNVVTALREAIDAIYASTSLE------AQQESIVESLSN------------KNPSVKSET 153 (242)
T ss_dssp H--HHHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTTC------------SCHHHHHHH
T ss_pred H--HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHcC------------CChHHHHHH
Confidence 1 13467899999988 58999999999999997754321 244555555521 124588899
Q ss_pred hHHHHhhh-ccCHH--HHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 195 SGVLRNAS-SAGEY--ARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 195 ~~~L~nLa-~~~~~--~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
+.+|..+. ..++. ....+ ..+++.|+.++ .+...+++..|..++..++....
T Consensus 154 l~~l~~~l~~~~~~~~~~~~l---~~l~p~l~~~l------~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 154 ALFIARALTRTQPTALNKKLL---KLLTTSLVKTL------NEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHTTCCGGGCCHHHH---HHHHHHHHHHH------TSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCccHHHH---HHHHHHHHHHh------cCCChHHHHHHHHHHHHHHHHcC
Confidence 99999854 33321 12222 23466677776 34456899999999999886654
No 57
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.71 E-value=0.00096 Score=64.85 Aligned_cols=186 Identities=15% Similarity=0.111 Sum_probs=122.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
.++.+.++|+++++.+|..|+.++.++...+++... +.++.+..+|.+.++.++..|+.+|..++.. +++...
T Consensus 143 l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~--~~~~~~ 215 (618)
T 1w63_A 143 LAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCER--SPDMLA 215 (618)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS--HHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh--ChHHHH
Confidence 367888899999999999999999998865554322 4577888899999999999999999999852 333222
Q ss_pred HHHhcCChHHHHHHhcc--------------CCCHHHHHHHHHHHHHhcccc-hhhHHHHhhChHHHHHHhhccCCCCCC
Q psy15592 115 AIKNAGGIPLLINLLRK--------------TADAEVKELVTGVLWNLSSCE-DLKKSIIDDGLQVVVNHIIIPHSGWDP 179 (294)
Q Consensus 115 ~i~~~g~i~~Lv~lL~~--------------~~~~~~~~~a~~~L~nLs~~~-~~r~~i~~~g~i~~L~~ll~~~s~~~~ 179 (294)
.+ ...++.++++|+. ..++-.+...+.+|..+...+ +.. ....+++..++.+...
T Consensus 216 ~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~--- 285 (618)
T 1w63_A 216 HF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTET--- 285 (618)
T ss_dssp HH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCC---
T ss_pred HH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhcccc---
Confidence 33 2678889988864 247788888999999987653 222 2344566666532100
Q ss_pred CCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccC
Q psy15592 180 VSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFR 253 (294)
Q Consensus 180 ~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~ 253 (294)
..+....++..|+.++..+...+ ..+. .+++.|..++. ..++.++.-|+.+|..+..+
T Consensus 286 ---~~~~~~aV~~ea~~~i~~l~~~~-~l~~------~a~~~L~~~L~------~~d~~vr~~aL~~L~~i~~~ 343 (618)
T 1w63_A 286 ---SKNVGNAILYETVLTIMDIKSES-GLRV------LAINILGRFLL------NNDKNIRYVALTSLLKTVQT 343 (618)
T ss_dssp ---SSTHHHHHHHHHHHHHHHSCCCH-HHHH------HHHHHHHHHHT------CSSTTTHHHHHHHHHHHHHH
T ss_pred ---ccchHHHHHHHHHHHHHhcCCCH-HHHH------HHHHHHHHHHh------CCCCchHHHHHHHHHHHHhh
Confidence 01334567777777887775432 1211 23455666652 22346666666666666544
No 58
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.65 E-value=0.0012 Score=55.80 Aligned_cols=188 Identities=15% Similarity=0.088 Sum_probs=133.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhH
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENK 113 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k 113 (294)
+.+..|..+|...|+.++.+|..+|-.+...-+.......-...++.++.++++.|+.+...|+++|..|-.+ .+-..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~--vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKD--VPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT--CCBCH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--CCCCH
Confidence 3578899999999999999999999997754222222222234699999999999999999999999999974 44444
Q ss_pred HHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHh
Q psy15592 114 RAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRN 193 (294)
Q Consensus 114 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~ 193 (294)
..+.. .+..|..++++ .++-+.+.+...|.-+...... -+++..+..++. |. +..++..
T Consensus 111 ~~y~K--l~~aL~dlik~-~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~--Sk----------d~~vK~a 169 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLES-PDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVV--SP----------DLYTKVA 169 (265)
T ss_dssp HHHHH--HHHHHHHHTTS-CCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHT--CS----------SHHHHHH
T ss_pred HHHHH--HHHHHHHHhcC-CCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHh--CC----------ChhHHHH
Confidence 44442 45788888886 5889999999999988433322 245567777772 22 2457888
Q ss_pred HhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 194 TSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 194 a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
+..+|.|++....+- . +. .+++.-+-.++. ..|+.+++.|..+|-.+....
T Consensus 170 gl~~L~eia~~S~D~-~-i~--~~I~~eI~elL~------~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 170 GFCLFLNMLNSSADS-G-HL--TLILDEIPSLLQ------NDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHHHHHHHGGGCSSC-C-CG--GGTTTTHHHHHT------CSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcccCCH-H-HH--HHHHHHHHHHHc------CCCHHHHHHHHHHHHHHHcCc
Confidence 889999998754211 1 11 244455556663 336789999999888776553
No 59
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.59 E-value=0.00083 Score=64.88 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=107.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhH
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENK 113 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k 113 (294)
.+...+++++++++.++|+.+.-++.+++..+++. . .-.+..+.+-|.++++.++..|+++|.++. .++..
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~---~--~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~ 119 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM---A--IMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKIT 119 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH---H--HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH---H--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHH
Confidence 34678889999999999988888888877433322 1 224678888899999999999999888887 44444
Q ss_pred HHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHH
Q psy15592 114 RAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFR 192 (294)
Q Consensus 114 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~ 192 (294)
..+ ++.+.+++.+ .++.+++.|+.+|..+... ++ .+-+.+.++.+..++.. .+..|+.
T Consensus 120 ~~l-----~~~l~~~L~d-~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d------------~d~~V~~ 178 (591)
T 2vgl_B 120 EYL-----CEPLRKCLKD-EDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIAD------------SNPMVVA 178 (591)
T ss_dssp HHH-----HHHHHHHSSC-SCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSC------------SCHHHHH
T ss_pred HHH-----HHHHHHHcCC-CChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCC------------CChhHHH
Confidence 443 4788899987 5999999999999999763 33 22335778888888831 1256889
Q ss_pred hHhHHHHhhhccCH
Q psy15592 193 NTSGVLRNASSAGE 206 (294)
Q Consensus 193 ~a~~~L~nLa~~~~ 206 (294)
+|+.+|..++..++
T Consensus 179 ~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 179 NAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999986543
No 60
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.55 E-value=0.0042 Score=60.31 Aligned_cols=184 Identities=11% Similarity=0.002 Sum_probs=128.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
+....++++.+++.+.++.+--++..++..+++. ..- .+..|.+-|.++++.++..|+++|.++. .++.-
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~---~~l--~in~l~kDL~~~n~~vr~lAL~~L~~i~----~~~~~- 140 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDV---HLL--MTNCIKNDLNHSTQFVQGLALCTLGCMG----SSEMC- 140 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHH---HHH--HHHHHHHHHSCSSSHHHHHHHHHHHHHC----CHHHH-
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHH---HHH--HHHHHHHhcCCCCHhHHHHHHHHHHhcC----CHHHH-
Confidence 4567778888999999888888888888544321 121 2668888899999999999999999998 44322
Q ss_pred HHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc-cchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHh
Q psy15592 115 AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRN 193 (294)
Q Consensus 115 ~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~ 193 (294)
...++.+.++|.+ .++.+++.|+.++..+.. +++..+ +.++.+..++. ..+..|+..
T Consensus 141 ----~~l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~------------D~d~~V~~~ 198 (618)
T 1w63_A 141 ----RDLAGEVEKLLKT-SNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLN------------EKNHGVLHT 198 (618)
T ss_dssp ----HHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTT------------CCCHHHHHH
T ss_pred ----HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhC------------CCCHhHHHH
Confidence 2456888899988 599999999999999976 343322 44455555552 122568899
Q ss_pred HhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhc---------CCCcchHHHHHHHHHHhccC
Q psy15592 194 TSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKS---------NIGNKSVENCVCILRNLSFR 253 (294)
Q Consensus 194 a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~---------~~~~~~~e~a~~~L~nLs~~ 253 (294)
|+.+|..++..+++....+ ...++.|+.+|......+ ..++-.+...+.+|..++..
T Consensus 199 Al~~L~~i~~~~~~~~~~~---~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 199 SVVLLTEMCERSPDMLAHF---RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp HHHHHHHHCCSHHHHHHHH---HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhChHHHHHH---HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence 9999999987665433333 366888998887643211 12456677777788777754
No 61
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.52 E-value=0.0019 Score=60.23 Aligned_cols=127 Identities=15% Similarity=0.110 Sum_probs=87.7
Q ss_pred HhhcC-CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCC--hHHHHHhhCC---------------C--CHHHHHHHHHHH
Q psy15592 41 SFLSN-PNNVIKANAAAYLQHLCYMDDPNKQKTRSLGG--IPPLVKLLGH---------------E--SPDVFRNACGAL 100 (294)
Q Consensus 41 ~lL~s-~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~--i~~Lv~lL~s---------------~--~~~v~~~a~~aL 100 (294)
..|+. .+...+..++..|..+.. .+++|..+.+.++ +++++.+++. + ...++-.++-++
T Consensus 174 ~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~i 252 (480)
T 1ho8_A 174 NILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLI 252 (480)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHH
T ss_pred HHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHH
Confidence 34444 234556678888998885 5789988887654 5677654431 1 245788999999
Q ss_pred HHhhcCCCChhhHHHHHhcCCh--HHHHHHhccCCCHHHHHHHHHHHHHhcccc-----hh-hHHHHhhChHHHHHHhh
Q psy15592 101 RNLSYGRQNDENKRAIKNAGGI--PLLINLLRKTADAEVKELVTGVLWNLSSCE-----DL-KKSIIDDGLQVVVNHII 171 (294)
Q Consensus 101 ~nLs~~~~~~~~k~~i~~~g~i--~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-----~~-r~~i~~~g~i~~L~~ll 171 (294)
|-|++ +++....+...+.. +.|+.+++.+..+.+.+-++++|+||...+ .. ++.++..++++.+..+-
T Consensus 253 WlLSF---~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 328 (480)
T 1ho8_A 253 WLLTF---NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLS 328 (480)
T ss_dssp HHHTT---SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHc---CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHh
Confidence 99999 77777777766644 677888888778999999999999997754 11 22333455566554443
No 62
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.39 E-value=0.0035 Score=57.40 Aligned_cols=201 Identities=13% Similarity=0.031 Sum_probs=122.2
Q ss_pred CCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCcccH--HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCC
Q psy15592 34 PNLTEVISFLSNP--NNVIKANAAAYLQHLCYMDDPNK--QKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQN 109 (294)
Q Consensus 34 g~i~~Lv~lL~s~--~~~~~~~a~~~L~nL~~~~~~~k--~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~ 109 (294)
..++.++..|.++ ++++|..|+.++.++...-.+.- ..+... .++.+...+.+++++++..++.+|..+... .
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~--~ 248 (462)
T 1ibr_B 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHF-IMQVVCEATQCPDTRVRVAALQNLVKIMSL--Y 248 (462)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHH-HHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--H
Confidence 3567788888887 79999999999998652111110 001111 255666777888999999999999999842 2
Q ss_pred hhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccch------------------hhHHHHh---hChHHHHH
Q psy15592 110 DENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCED------------------LKKSIID---DGLQVVVN 168 (294)
Q Consensus 110 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~------------------~r~~i~~---~g~i~~L~ 168 (294)
+..-......+.++.++..+++ .++.++..++..+..++.... ....+++ ..+++.+.
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~ 327 (462)
T 1ibr_B 249 YQYMETYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327 (462)
T ss_dssp GGGCTTTTTTTHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHH
Confidence 2110011111556777777777 588999999998888865431 0111221 23456666
Q ss_pred HhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHH
Q psy15592 169 HIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILR 248 (294)
Q Consensus 169 ~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~ 248 (294)
..+... ..+ . +..+..+.+.+..+|..++..-. ...++.++.++..... +.+.++++.|+.+|.
T Consensus 328 ~~l~~~-d~d---~-~~~~~~~r~~a~~~L~~l~~~~~---------~~~~~~~~~~l~~~l~--~~~~~~r~aal~~l~ 391 (462)
T 1ibr_B 328 QTLTKQ-DEN---D-DDDDWNPCKAAGVCLMLLATCCE---------DDIVPHVLPFIKEHIK--NPDWRYRDAAVMAFG 391 (462)
T ss_dssp HHTTCC-CSS---C-CTTCCSHHHHHHHHHHHHHHHTT---------TTHHHHHHHHHHHHTT--CSSHHHHHHHHHHHH
T ss_pred HHHHhc-ccc---c-ccccchHHHHHHHHHHHHHHhcc---------HHHHHHHHHHHHHHhc--CCChHHHHHHHHHHH
Confidence 666321 100 0 01123577889999988876432 1223444444443322 345689999999999
Q ss_pred HhccCC
Q psy15592 249 NLSFRC 254 (294)
Q Consensus 249 nLs~~~ 254 (294)
.++...
T Consensus 392 ~l~~~~ 397 (462)
T 1ibr_B 392 CILEGP 397 (462)
T ss_dssp HTSSSS
T ss_pred HHhcCC
Confidence 999765
No 63
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.29 E-value=0.019 Score=51.10 Aligned_cols=152 Identities=11% Similarity=0.055 Sum_probs=113.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHH-hhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQH-LCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~n-L~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
+..+++.|.+++.+.+..+..-|.. +. .+.....+++..+|+..|+.+....+.+.+..++++|.+|-. +...-.
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q-~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~---~v~Gm~ 195 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQ-EDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML---FVDGML 195 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHH-TCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT---SHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhh-cchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh---cccccc
Confidence 4577788888888888899988888 55 678899999999999999999999999999999999999996 555555
Q ss_pred HHH-hcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccch-hhHHHHhh--------C--hHHHHHHhhccCCCCCCCCC
Q psy15592 115 AIK-NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCED-LKKSIIDD--------G--LQVVVNHIIIPHSGWDPVSA 182 (294)
Q Consensus 115 ~i~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~-~r~~i~~~--------g--~i~~L~~ll~~~s~~~~~~~ 182 (294)
.++ ....|..++.++.+ .+..+.+.++.+|.++....+ +...+.++ | ...-++.+|...
T Consensus 196 gvvs~~~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~-------- 266 (339)
T 3dad_A 196 GVVAHSDTIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEK-------- 266 (339)
T ss_dssp HHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTT--------
T ss_pred chhCCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhcc--------
Confidence 555 56678888889886 689999999999999977543 43333221 2 135666666311
Q ss_pred CccchhhHHHhHhHHHHhh
Q psy15592 183 GETCWSTIFRNTSGVLRNA 201 (294)
Q Consensus 183 ~~~~~~~v~~~a~~~L~nL 201 (294)
+..+..++.+|...+-.+
T Consensus 267 -~~~D~elq~~amtLIN~l 284 (339)
T 3dad_A 267 -NGADPELLVYTVTLINKT 284 (339)
T ss_dssp -TSCCHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHH
Confidence 123456777776555444
No 64
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.13 E-value=0.018 Score=48.55 Aligned_cols=144 Identities=13% Similarity=0.100 Sum_probs=101.8
Q ss_pred CHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhh
Q psy15592 35 NLTEVISFLS-NPNNVIKANAAAYLQHLCYMD-DPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN 112 (294)
Q Consensus 35 ~i~~Lv~lL~-s~~~~~~~~a~~~L~nL~~~~-~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~ 112 (294)
.++.|...+. ..+..++..|+.++..++..- ......+.. .+|+|+..+++.+..++..|..+|..+.. ....
T Consensus 57 i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~--ilp~ll~~l~d~~~~vr~~a~~aL~~~~~---~~~~ 131 (242)
T 2qk2_A 57 LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA--CVPSLLEKFKEKKPNVVTALREAIDAIYA---STSL 131 (242)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHT---TSCH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHH---cCCH
Confidence 3667778884 899999999999999988421 122222222 48999999999999999999999999985 2211
Q ss_pred HHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhc-cc-chh-hHHHHhhChHHHHHHhhccCCCCCCCCCCccchhh
Q psy15592 113 KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS-SC-EDL-KKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWST 189 (294)
Q Consensus 113 k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs-~~-~~~-r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~ 189 (294)
. ..++.+...|++ .++.++..++.+|..+. .. ++. -...+ ..+++.+..++.. ....
T Consensus 132 -~-----~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~~l~p~l~~~l~D------------~~~~ 191 (242)
T 2qk2_A 132 -E-----AQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALNKKLL-KLLTTSLVKTLNE------------PDPT 191 (242)
T ss_dssp -H-----HHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-HHHHHHHHHHHTS------------SCHH
T ss_pred -H-----HHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHHH-HHHHHHHHHHhcC------------CChH
Confidence 1 245778888887 58999999999999964 33 221 11222 2466888888731 1245
Q ss_pred HHHhHhHHHHhhhc
Q psy15592 190 IFRNTSGVLRNASS 203 (294)
Q Consensus 190 v~~~a~~~L~nLa~ 203 (294)
+...|..++..++.
T Consensus 192 VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 192 VRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888874
No 65
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.13 E-value=0.0011 Score=60.92 Aligned_cols=193 Identities=10% Similarity=0.034 Sum_probs=122.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc-cHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDP-NKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~-~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
++.+.+.+.+++++++..++.+|..++...++ .+..+. .+.++.++..+++.+++++..|+..+..++. ......
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~---~~~~~~ 294 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCD---EEMDLA 294 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHH---HHHHHH
Confidence 56666777888999999999999988743322 111111 1446777788888899999999999888874 110000
Q ss_pred H------------------HHh---cCChHHHHHHhccC------CCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHH
Q psy15592 115 A------------------IKN---AGGIPLLINLLRKT------ADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVV 167 (294)
Q Consensus 115 ~------------------i~~---~g~i~~Lv~lL~~~------~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L 167 (294)
. +.+ ...+|.+++.|... .+..++..+..+|..++..-. ..++ ..+++.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~-~~~~~~l 371 (462)
T 1ibr_B 295 IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFI 371 (462)
T ss_dssp HHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHH-HHHHHHH
T ss_pred HhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHH
Confidence 0 110 23456666666431 234678888889888876432 1222 2455666
Q ss_pred HHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHH-hhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHH
Q psy15592 168 NHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLR-ECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCI 246 (294)
Q Consensus 168 ~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~-~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~ 246 (294)
...+.. .+..+++.++.+|..++..... +.+. ....+++.|+.++. +.++.++..|+.+
T Consensus 372 ~~~l~~------------~~~~~r~aal~~l~~l~~~~~~--~~~~~~l~~~~~~l~~~l~------d~~~~Vr~~a~~~ 431 (462)
T 1ibr_B 372 KEHIKN------------PDWRYRDAAVMAFGCILEGPEP--SQLKPLVIQAMPTLIELMK------DPSVVVRDTAAWT 431 (462)
T ss_dssp HHHTTC------------SSHHHHHHHHHHHHHTSSSSCT--TTTCTTTTTHHHHHHHGGG------CSCHHHHHHHHHH
T ss_pred HHHhcC------------CChHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHH
Confidence 666631 1245788899999999865321 0111 11456677777663 3457899999999
Q ss_pred HHHhccCCc
Q psy15592 247 LRNLSFRCQ 255 (294)
Q Consensus 247 L~nLs~~~~ 255 (294)
|.+++....
T Consensus 432 l~~~~~~~~ 440 (462)
T 1ibr_B 432 VGRICELLP 440 (462)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHhcc
Confidence 999997763
No 66
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.03 E-value=0.015 Score=57.80 Aligned_cols=198 Identities=10% Similarity=0.022 Sum_probs=121.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-c-cHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhh-
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDD-P-NKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN- 112 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~-~-~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~- 112 (294)
++.+.+.+.+++...|..|+.++..++.... + ....+. ..++.|+..+.++++.++..++++|..++.. ....
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~~~ 446 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIADS--VAESI 446 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH--HGGGS
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH--hhhhc
Confidence 4555566678889999999999999984321 1 111222 3578899999999999999999999998841 1000
Q ss_pred --HHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc------chhhHHHHhhChHHHHHHhhccCCCCCCCCCCc
Q psy15592 113 --KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC------EDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGE 184 (294)
Q Consensus 113 --k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~------~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~ 184 (294)
... -...++.|+..+.+ ++.++..++++|.+++.. .....-+ ..+++.+..++... +
T Consensus 447 ~~~~~--~~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~---d------ 511 (861)
T 2bpt_A 447 DPQQH--LPGVVQACLIGLQD--HPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRI---D------ 511 (861)
T ss_dssp CTTTT--HHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCS---C------
T ss_pred CCHHH--HHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCc---C------
Confidence 001 12346778888866 388999999999988653 1122111 34456666666311 0
Q ss_pred cchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHh---------hcCCCcchHHHHHHHHHHhccCCc
Q psy15592 185 TCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIE---------KSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 185 ~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~---------~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
.+..+...+..++..+............ ..+++.++..+..... +.+....++..++.+|.+++....
T Consensus 512 -~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 588 (861)
T 2bpt_A 512 -NEFNARASAFSALTTMVEYATDTVAETS--ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP 588 (861)
T ss_dssp -CGGGHHHHHHHHHHHHHHHCCGGGHHHH--HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred -cchHHHHHHHHHHHHHHHHcchhhHHHH--HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1134777788888888654322111111 2456777777754300 001123567788899988887764
No 67
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.01 E-value=0.01 Score=59.02 Aligned_cols=192 Identities=12% Similarity=0.042 Sum_probs=124.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh---
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDE--- 111 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~--- 111 (294)
.++.+.+.+.+++++++..++.+|..++...++.-........++.++..+.+.++.++..|+..+..++. ...
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~---~~~~~~ 294 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD---EEMDLA 294 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH---HHHhHh
Confidence 46777778888899999999999998875433322222222457888888888899999999999888874 110
Q ss_pred --------------------hHHHHHhcCChHHHHHHhccC------CCHHHHHHHHHHHHHhcccchhhHHHHhhChHH
Q psy15592 112 --------------------NKRAIKNAGGIPLLINLLRKT------ADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQV 165 (294)
Q Consensus 112 --------------------~k~~i~~~g~i~~Lv~lL~~~------~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~ 165 (294)
.+..+ ...++.++..|... .+..++..+..+|..++..-. +.++ ..+++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~-~~~l~ 369 (876)
T 1qgr_A 295 IEASEAAEQGRPPEHTSKFYAKGAL--QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLP 369 (876)
T ss_dssp HHHHHHHHHSSCCSSCCCCHHHHHH--HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHH
T ss_pred hhhccccccCCCccchhHHHHHHHH--HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhH-HHHHH
Confidence 00011 23456677777531 245678888888888865422 1222 23445
Q ss_pred HHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCH-HHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHH
Q psy15592 166 VVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGE-YARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCV 244 (294)
Q Consensus 166 ~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~-~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~ 244 (294)
.+...+.. .+..+++.++.+|..++.... +...... ..+++.|+..+. +.+..++..|+
T Consensus 370 ~l~~~l~~------------~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~------d~~~~vr~~a~ 429 (876)
T 1qgr_A 370 FIKEHIKN------------PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMK------DPSVVVRDTAA 429 (876)
T ss_dssp HHHHHTTC------------SSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHT------CSSHHHHHHHH
T ss_pred HHHHHccC------------CChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhC------CCCHHHHHHHH
Confidence 55555521 124578899999999987543 2211111 345777777773 34468999999
Q ss_pred HHHHHhccCC
Q psy15592 245 CILRNLSFRC 254 (294)
Q Consensus 245 ~~L~nLs~~~ 254 (294)
.+|.+++...
T Consensus 430 ~~l~~~~~~~ 439 (876)
T 1qgr_A 430 WTVGRICELL 439 (876)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999999765
No 68
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.98 E-value=0.011 Score=52.51 Aligned_cols=157 Identities=10% Similarity=0.070 Sum_probs=116.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHH-hhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHH
Q psy15592 79 PPLVKLLGHESPDVFRNACGALRN-LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKS 157 (294)
Q Consensus 79 ~~Lv~lL~s~~~~v~~~a~~aL~n-Ls~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~ 157 (294)
..+++.|.+++.+.++.++..|.. ++. +..-..+++..+|+..|+++...+ +...+..++.+|.+|-...+....
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~---D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQE---DKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHT---CTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhc---chHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccc
Confidence 467777778888888888888888 653 777899999999999999999885 999999999999999998888877
Q ss_pred HHh-hChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhh-------cC--cHHHHHHHHH
Q psy15592 158 IID-DGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLREC-------EG--LIDSLLYVVK 227 (294)
Q Consensus 158 i~~-~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~-------~g--~i~~Lv~lL~ 227 (294)
+++ ...+..+..++.+ ....|.+-|..+|.++....+.+...+.+. .| -...|+.+|.
T Consensus 197 vvs~~~fI~~lyslv~s------------~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~ 264 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCAS------------LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILE 264 (339)
T ss_dssp HHHCHHHHHHHHHGGGC------------SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHT
T ss_pred hhCCHHHHHHHHHHHcC------------ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHh
Confidence 774 5667778777741 125688999999999987665444433321 11 2557888884
Q ss_pred HhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 228 SAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 228 ~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
.. +..|.+++.+|+..+-.+-.+.
T Consensus 265 ~~---~~~D~elq~~amtLIN~lL~~a 288 (339)
T 3dad_A 265 EK---NGADPELLVYTVTLINKTLAAL 288 (339)
T ss_dssp TT---TSCCHHHHHHHHHHHHHHHHHC
T ss_pred cc---CCCCHHHHHHHHHHHHHHHhcC
Confidence 21 2346688888887766554443
No 69
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.0032 Score=53.95 Aligned_cols=197 Identities=7% Similarity=-0.029 Sum_probs=123.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHH-hhcCCcccHHHHHhc-CChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCCC-hhhH
Q psy15592 38 EVISFLSNPNNVIKANAAAYLQH-LCYMDDPNKQKTRSL-GGIPPLVKLL-GHESPDVFRNACGALRNLSYGRQN-DENK 113 (294)
Q Consensus 38 ~Lv~lL~s~~~~~~~~a~~~L~n-L~~~~~~~k~~i~~~-g~i~~Lv~lL-~s~~~~v~~~a~~aL~nLs~~~~~-~~~k 113 (294)
.+-+.+.+.+-..|..|...|.. +....++.......+ ..+..|.+.+ ++.+..++..|+.+|..|+.+ -. +.-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~-l~~~~f~ 98 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDK-LKTPGFS 98 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-HCTTTSC
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh-ccccccc
Confidence 35667789999999999999999 763322211000011 1256777888 688999999999999999852 01 1111
Q ss_pred -HHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccc-hhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHH
Q psy15592 114 -RAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE-DLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIF 191 (294)
Q Consensus 114 -~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~ 191 (294)
... .-.++.++..+++ ....++..+..+|-.+...- ..-..-.-..+++.+...+.. ....+.
T Consensus 99 ~~y~--~~llp~ll~~l~d-kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~------------k~~~vk 163 (249)
T 2qk1_A 99 KDYV--SLVFTPLLDRTKE-KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH------------KTPQIR 163 (249)
T ss_dssp HHHH--HHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC------------SSHHHH
T ss_pred HHHH--HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC------------CChHHH
Confidence 111 1257899999988 47889999888888876532 110000001234455555521 114588
Q ss_pred HhHhHHHHhhhccCHHH-HHHHHhh-cCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCcc
Q psy15592 192 RNTSGVLRNASSAGEYA-RKKLREC-EGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQE 256 (294)
Q Consensus 192 ~~a~~~L~nLa~~~~~~-r~~~~~~-~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~ 256 (294)
+.++.+|..+....... .+..... ..++|.|..++ ++.+.++++.|..+|..++....+
T Consensus 164 ~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l------~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 164 MECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV------NDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH------TCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHHhCH
Confidence 88888888887543211 1222223 46788888888 355678999999999988865543
No 70
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.94 E-value=0.037 Score=46.82 Aligned_cols=157 Identities=18% Similarity=0.082 Sum_probs=113.9
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhh
Q psy15592 33 DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN 112 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~ 112 (294)
...++.+++++++.|+.+...|..+|..+-.+.+-....+... +.+|..+++++++-+...++..|.-|.. ....
T Consensus 74 e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl--~~aL~dlik~~~~il~~eaae~Lgklkv---~~~~ 148 (265)
T 3b2a_A 74 ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKA--AKTLVSLLESPDDMMRIETIDVLSKLQP---LEDS 148 (265)
T ss_dssp HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHH--HHHHHHHTTSCCHHHHHHHHHHHHHCCB---SCCC
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHHHhcCCCchHHHHHHHHhCcCCc---ccch
Confidence 4568899999999999999999999999887766677777765 7899999999999999999999999964 2211
Q ss_pred HHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccc---hhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhh
Q psy15592 113 KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE---DLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWST 189 (294)
Q Consensus 113 k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~---~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~ 189 (294)
+ +.+..+..++.+ .+.+++..++.+|-|+++.. ++-..++ .++..++. +.|+-
T Consensus 149 ~------~V~~~l~sLl~S-kd~~vK~agl~~L~eia~~S~D~~i~~~I~-~eI~elL~----------------~eD~~ 204 (265)
T 3b2a_A 149 K------LVRTYINELVVS-PDLYTKVAGFCLFLNMLNSSADSGHLTLIL-DEIPSLLQ----------------NDNEF 204 (265)
T ss_dssp H------HHHHHHHHHHTC-SSHHHHHHHHHHHHHHGGGCSSCCCGGGTT-TTHHHHHT----------------CSCHH
T ss_pred H------HHHHHHHHHHhC-CChhHHHHHHHHHHHhhcccCCHHHHHHHH-HHHHHHHc----------------CCCHH
Confidence 2 234678889955 79999999999999998743 3223332 23333331 12356
Q ss_pred HHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHH
Q psy15592 190 IFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVV 226 (294)
Q Consensus 190 v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL 226 (294)
+++.|...|..+...+- . ++.++-+..++
T Consensus 205 l~e~aLd~Le~ils~pi------~--~~~~~~~~~~~ 233 (265)
T 3b2a_A 205 IVELALDVLEKALSFPL------L--ENVKIELLKIS 233 (265)
T ss_dssp HHHHHHHHHHHHTTSCC------C--SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc------c--HhHHHHHHHHH
Confidence 88888888888876542 1 35555555554
No 71
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.93 E-value=0.0048 Score=64.37 Aligned_cols=193 Identities=11% Similarity=0.051 Sum_probs=121.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHH-HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQ-KTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~-~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
++.++.-+.++|+++|..|...|.+....+ .... .-.....++.|++.|.+.+++++..|+.+|..++.+ ..+....
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~-~~~~~~~ 85 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSK-VKEYQVE 85 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-SCHHHHH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-CCHHHHH
Confidence 677888889999999999999998865322 1100 000112467899999999999999999999999852 1221222
Q ss_pred HHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhh------HHHHhhChHHHHHHhhccCCCCCCCCCCccchh
Q psy15592 115 AIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLK------KSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWS 188 (294)
Q Consensus 115 ~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r------~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~ 188 (294)
..++.|+..+.+ .+..++..++.+|..++..-... ..-.-..+++.+...+.. ..+.
T Consensus 86 -----~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-----------~~~~ 148 (1230)
T 1u6g_C 86 -----TIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-----------QEDV 148 (1230)
T ss_dssp -----HHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-----------CSCH
T ss_pred -----HHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-----------CCch
Confidence 245777788777 46688888888998886532111 011123466777777731 0124
Q ss_pred hHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 189 TIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 189 ~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
.+...+..+|..++..... .+ ...++.++..+..... +.+..+++.|+.+|..++....
T Consensus 149 ~~~~~al~~l~~~~~~~~~---~l---~~~~~~ll~~l~~~L~--~~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 149 SVQLEALDIMADMLSRQGG---LL---VNFHPSILTCLLPQLT--SPRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHHHHHHHHHTCS---SC---TTTHHHHHHHHGGGGG--CSSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHhHh---HH---HHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHhcC
Confidence 5778888888888742110 01 1123334444433322 3345799999999999887664
No 72
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.92 E-value=0.0073 Score=63.04 Aligned_cols=192 Identities=11% Similarity=0.020 Sum_probs=122.3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhh-
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN- 112 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~- 112 (294)
..++.+++.|.++++++|..|+.+|..++..-.+ ..+. ..++.|+..|.++++.++..|+.+|..++.. -.+..
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~~--~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~-l~~~~~ 122 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQVE--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGE-LPPASS 122 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHHH--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHH-CC----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh-CCCccc
Confidence 3578899999999999999999999998853222 1221 2367888888898899999999999988741 01110
Q ss_pred ---HHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc--chhhHHHHhhChHHHHHHhhccCCCCCCCCCCccch
Q psy15592 113 ---KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC--EDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCW 187 (294)
Q Consensus 113 ---k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~--~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~ 187 (294)
...-.....+|.|+..+.+..+..++..++.+|..++.. +..... -..+++.+...+.. ..
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~------------~~ 188 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTS------------PR 188 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGC------------SS
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcC------------Cc
Confidence 011122356789999997435889999999999998742 111111 12344555555521 11
Q ss_pred hhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 188 STIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 188 ~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
..+.+.++.+|..++...++. + ....++.|+..+.... +..++..++.++..++...
T Consensus 189 ~~vR~~a~~al~~l~~~~~~~---~--~~~~l~~l~~~L~~~~-----~~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 189 LAVRKRTIIALGHLVMSCGNI---V--FVDLIEHLLSELSKND-----SMSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp HHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHHTC-----SSCSCTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCHH---H--HHHHHHHHHHHhccCC-----chhHHHHHHHHHHHHHHHh
Confidence 458889999999998765321 2 2466788888876431 1244455566666555443
No 73
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.91 E-value=0.004 Score=62.01 Aligned_cols=201 Identities=13% Similarity=0.044 Sum_probs=120.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-c-cHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhh
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDD-P-NKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDEN 112 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~-~-~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~ 112 (294)
.++.+...+.+++..+|..|+.++..++.... + ....+ ...++.++..|.++++.++..|+++|.+++.. .+..
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~--~~~~ 442 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL--LPEA 442 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--Cchh
Confidence 34555667778899999999999999985332 1 12222 23588999999999999999999999999852 2210
Q ss_pred ---HHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccch------------hhHHHH--hhChHHHHHHhhccCC
Q psy15592 113 ---KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCED------------LKKSII--DDGLQVVVNHIIIPHS 175 (294)
Q Consensus 113 ---k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~------------~r~~i~--~~g~i~~L~~ll~~~s 175 (294)
... -...++.|+..|.+ ++.++..++++|.+++..-. ....+. -..+++.+..++....
T Consensus 443 ~~~~~~--l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~ 518 (876)
T 1qgr_A 443 AINDVY--LAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD 518 (876)
T ss_dssp TSSTTT--HHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS
T ss_pred cccHHH--HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcC
Confidence 111 12456777888866 48899999999999975321 001111 1346677777764211
Q ss_pred CCCCCCCCccchhhHHHhHhHHHHhhhccCH-HHHHHHHhhcCcHHHHHHHHHHhHh--h---cCCC----cchHHHHHH
Q psy15592 176 GWDPVSAGETCWSTIFRNTSGVLRNASSAGE-YARKKLRECEGLIDSLLYVVKSAIE--K---SNIG----NKSVENCVC 245 (294)
Q Consensus 176 ~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~-~~r~~~~~~~g~i~~Lv~lL~~~~~--~---~~~~----~~~~e~a~~ 245 (294)
. . ...+...+..++..+..... +....+ ...++.++..+..... . ++.| ++++..++.
T Consensus 519 ~-~--------~~~~r~~~~~~l~~l~~~~~~~~~~~~---~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 586 (876)
T 1qgr_A 519 G-H--------QNNLRSSAYESLMEIVKNSAKDCYPAV---QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCA 586 (876)
T ss_dssp S-C--------STTHHHHHHHHHHHHHHTCCSTTHHHH---HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHH
T ss_pred c-c--------hhhHHHHHHHHHHHHHHHCchhhHHHH---HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH
Confidence 1 0 12255556666666654321 122222 2446666666654210 0 1111 245677788
Q ss_pred HHHHhccCCc
Q psy15592 246 ILRNLSFRCQ 255 (294)
Q Consensus 246 ~L~nLs~~~~ 255 (294)
+|..++....
T Consensus 587 ~l~~l~~~~~ 596 (876)
T 1qgr_A 587 TLQNVLRKVQ 596 (876)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHHHhC
Confidence 8888877663
No 74
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.72 E-value=0.062 Score=52.13 Aligned_cols=159 Identities=13% Similarity=0.078 Sum_probs=113.7
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhH
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENK 113 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k 113 (294)
.+....++++.+++.+.|+.+--++..++..+++ .+.- .+..+.+=|.++++-++..|+++|.++. .++--
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e---~~~L--~iN~l~kDl~~~n~~ir~lALr~L~~i~----~~e~~ 144 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSE---LIRL--INNAIKNDLASRNPTFMGLALHCIANVG----SREMA 144 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHH---HHHH--HHHHHHHHHHSCCHHHHHHHHHHHHHHC----CHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcH---HHHH--HHHHHHHhcCCCCHHHHHHHHHHhhccC----CHHHH
Confidence 4577888899999999998888888888754432 2222 2557777778999999999999999997 45433
Q ss_pred HHHHhcCChHHHHHHh--ccCCCHHHHHHHHHHHHHhcc-cchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhH
Q psy15592 114 RAIKNAGGIPLLINLL--RKTADAEVKELVTGVLWNLSS-CEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTI 190 (294)
Q Consensus 114 ~~i~~~g~i~~Lv~lL--~~~~~~~~~~~a~~~L~nLs~-~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v 190 (294)
. ..++.+.++| .+ .++-+++.|+-++..+.. +++... ..+.++.+..++.. .+..+
T Consensus 145 ~-----~l~~~v~~~l~~~d-~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d------------~d~~V 203 (621)
T 2vgl_A 145 E-----AFAGEIPKILVAGD-TMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLND------------QHLGV 203 (621)
T ss_dssp H-----HHTTHHHHHHHCSS-SCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTC------------SCHHH
T ss_pred H-----HHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCC------------CCccH
Confidence 3 3458888888 66 599999999999998865 333221 24788888888831 12458
Q ss_pred HHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHH
Q psy15592 191 FRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKS 228 (294)
Q Consensus 191 ~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~ 228 (294)
+.+|+.++..++..++.. + ...++.+++.|..
T Consensus 204 ~~~a~~~l~~i~~~~~~~---~---~~~~~~~~~~L~~ 235 (621)
T 2vgl_A 204 VTAATSLITTLAQKNPEE---F---KTSVSLAVSRLSR 235 (621)
T ss_dssp HHHHHHHHHHHHHHCHHH---H---TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHH---H---HHHHHHHHHHHHH
Confidence 899999999998766531 1 2456666666553
No 75
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.71 E-value=0.12 Score=48.08 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=94.9
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCC--hHHHHHHhcc----------------CCCHHHHHH
Q psy15592 80 PLVKLLGH-ESPDVFRNACGALRNLSYGRQNDENKRAIKNAGG--IPLLINLLRK----------------TADAEVKEL 140 (294)
Q Consensus 80 ~Lv~lL~s-~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~--i~~Lv~lL~~----------------~~~~~~~~~ 140 (294)
.++..|.. .+...+..++.+|..|.. .++.|..+.+.++ +++++++++. ....+++.+
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~---~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~ 247 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAV---IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYH 247 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHT---SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhc---chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHH
Confidence 35555555 345556678999999997 8889999986554 6777665542 113577899
Q ss_pred HHHHHHHhcccchhhHHHHhhChH--HHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCH----HH-HHHHH
Q psy15592 141 VTGVLWNLSSCEDLKKSIIDDGLQ--VVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGE----YA-RKKLR 213 (294)
Q Consensus 141 a~~~L~nLs~~~~~r~~i~~~g~i--~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~----~~-r~~~~ 213 (294)
++-++|-|+..++..+.+...++. +.++.++.. ..-+.|++-++.+|+|+...+. .. .+.+.
T Consensus 248 ~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~-----------s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~ 316 (480)
T 1ho8_A 248 SLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKI-----------TIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLL 316 (480)
T ss_dssp HHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHH-----------CCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHh-----------hccchhHHHHHHHHHHHhcccchhhhhHHHHHHH
Confidence 999999999999988888887765 555555531 1126799999999999987652 11 22333
Q ss_pred hhcCcHHHHHHHHHHhHhhcCCCcchHHH
Q psy15592 214 ECEGLIDSLLYVVKSAIEKSNIGNKSVEN 242 (294)
Q Consensus 214 ~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~ 242 (294)
. .++ +.++..|.. +...|+++.+-
T Consensus 317 ~-~~~-l~~l~~L~~---rk~~Dedl~ed 340 (480)
T 1ho8_A 317 L-GNA-LPTVQSLSE---RKYSDEELRQD 340 (480)
T ss_dssp H-HCH-HHHHHHHHS---SCCSSHHHHHH
T ss_pred H-ccc-hHHHHHHhh---CCCCcHHHHHH
Confidence 3 344 445555542 23445555544
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.011 Score=50.64 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=101.7
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhhcCC--cccH-HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy15592 36 LTEVISFL-SNPNNVIKANAAAYLQHLCYMD--DPNK-QKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 36 i~~Lv~lL-~s~~~~~~~~a~~~L~nL~~~~--~~~k-~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
+..|.+.+ +..+..++..|+.+|..++..- +... ..... .+|+++..+++..+.++..+..+|..+... .++
T Consensus 62 ~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~- 137 (249)
T 2qk1_A 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDP- 137 (249)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCT-
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccc-
Confidence 56777777 6889999999999999988321 1222 33333 389999999999999999999888888741 111
Q ss_pred hHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchh-hHHH---HhhChHHHHHHhhccCCCCCCCCCCccch
Q psy15592 112 NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDL-KKSI---IDDGLQVVVNHIIIPHSGWDPVSAGETCW 187 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~-r~~i---~~~g~i~~L~~ll~~~s~~~~~~~~~~~~ 187 (294)
....-.=...++.|+..|++. ++.+++.++.+|..+...... ...+ +...+++.+..++.. .+
T Consensus 138 ~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D------------~~ 204 (249)
T 2qk1_A 138 LASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND------------TQ 204 (249)
T ss_dssp TCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC------------SS
T ss_pred cccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC------------CC
Confidence 000000012557788888774 899999999999988754321 1222 224677888888831 12
Q ss_pred hhHHHhHhHHHHhhh
Q psy15592 188 STIFRNTSGVLRNAS 202 (294)
Q Consensus 188 ~~v~~~a~~~L~nLa 202 (294)
..+...|..+|.-++
T Consensus 205 ~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 205 PAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 568888888887776
No 77
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.46 E-value=0.035 Score=55.07 Aligned_cols=192 Identities=11% Similarity=0.018 Sum_probs=120.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc-cHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhH
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDP-NKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENK 113 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~-~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k 113 (294)
.++.|...+.++++++|..++.+|..++...++ ....+. ...++.++..+.+.+++++..|+.++..++. .....
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~---~~~~~ 300 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSPNDKVASMTVEFWSTICE---EEIDI 300 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH---HHHhh
Confidence 466677778889999999999999888743322 222222 1346677788888899999999999988874 21100
Q ss_pred ------------------HHHHhcCChHHHHHHhccC------CCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHH
Q psy15592 114 ------------------RAIKNAGGIPLLINLLRKT------ADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNH 169 (294)
Q Consensus 114 ------------------~~i~~~g~i~~Lv~lL~~~------~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ 169 (294)
.... ...++.++..|... .+..++..+..+|..++..-. ..++ ..+++.+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-~~l~~~l~~ 376 (861)
T 2bpt_A 301 AYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-EPVLEFVEQ 376 (861)
T ss_dssp HHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHH
T ss_pred hhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-HHHHHHHHH
Confidence 0111 34567777777642 134688888889988876321 1111 124455655
Q ss_pred hhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCH-HHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHH
Q psy15592 170 IIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGE-YARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILR 248 (294)
Q Consensus 170 ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~-~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~ 248 (294)
.+.. .+..+.+.++.++..++.... +.-.... ..+++.|+..+ .+.++.++..++.+|.
T Consensus 377 ~l~~------------~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l------~d~~~~vr~~a~~~l~ 436 (861)
T 2bpt_A 377 NITA------------DNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLM------NDQSLQVKETTAWCIG 436 (861)
T ss_dssp HTTC------------SSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGG------GCSCHHHHHHHHHHHH
T ss_pred HcCC------------CChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHc------CCCcHHHHHHHHHHHH
Confidence 5521 113477889999999986532 2111111 23455555544 2345689999999999
Q ss_pred HhccCC
Q psy15592 249 NLSFRC 254 (294)
Q Consensus 249 nLs~~~ 254 (294)
.++...
T Consensus 437 ~l~~~~ 442 (861)
T 2bpt_A 437 RIADSV 442 (861)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888665
No 78
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.26 E-value=0.052 Score=48.63 Aligned_cols=134 Identities=11% Similarity=0.136 Sum_probs=99.0
Q ss_pred HHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCC
Q psy15592 100 LRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDP 179 (294)
Q Consensus 100 L~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~ 179 (294)
|.||..| +...-..+++.+|+..+..++.- .+.++.+..+..|...|.....+..=+ ...+|+++..+.-
T Consensus 266 LL~LLmH--dSnAIDGFVk~DGv~~I~TvinY-pN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~------ 335 (619)
T 3c2g_A 266 LLGLLLH--DSDAIDGFVRSDGVGAITTVVQY-PNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEI------ 335 (619)
T ss_dssp HHHHHCC--SHHHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHH------
T ss_pred HHHHHhc--ccccccceeecccceeEEEEeec-CCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhcc------
Confidence 5667764 66667889999999999999977 588999999999999887665543222 3466888888741
Q ss_pred CCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCc-chHHHHHHHHHH
Q psy15592 180 VSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGN-KSVENCVCILRN 249 (294)
Q Consensus 180 ~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~-~~~e~a~~~L~n 249 (294)
+.+.++++..+|.|+|...+..+.++.... .|+|+.|...+.....-.+..+ .-+..|++++.|
T Consensus 336 -----h~eDdvvYSGTGFLSNVVAHKq~VKelAI~-~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 336 -----HPDDEVIYSGTGFLSNVVAHKQHVKDIAIR-SNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp -----CCCHHHHHHHHHHHHHHSTTCHHHHHHHHH-TTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred -----CCCcceEEecchHHHHHHhcccchHHHHhc-cCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 233569999999999999999889888777 6999999988864322222222 345557777766
No 79
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.12 E-value=0.07 Score=47.80 Aligned_cols=114 Identities=20% Similarity=0.229 Sum_probs=90.6
Q ss_pred HHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHH
Q psy15592 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEV 137 (294)
Q Consensus 58 L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~ 137 (294)
|.+|-.++...-.-+++..|+..+..+..-++.++.+..+..|...|. ...-..+-=...+|.++..+.-.++.++
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSD----aksL~~t~L~e~LPFi~~~i~~h~eDdv 341 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSD----AKALAKTPLENILPFLLRLIEIHPDDEV 341 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTT----CGGGGTSCCTTHHHHHHHHHHHCCCHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecc----hHHHhhccccccchHHHHHhccCCCcce
Confidence 556665677788889999999999999999999999999999999883 2211111123567888888876678999
Q ss_pred HHHHHHHHHHhcccc-hhhHHHHhhChHHHHHHhhccCC
Q psy15592 138 KELVTGVLWNLSSCE-DLKKSIIDDGLQVVVNHIIIPHS 175 (294)
Q Consensus 138 ~~~a~~~L~nLs~~~-~~r~~i~~~g~i~~L~~ll~~~s 175 (294)
....++.|.|...+. ..|+-.+..|+++++...+..+.
T Consensus 342 vYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~ 380 (619)
T 3c2g_A 342 IYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYP 380 (619)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSC
T ss_pred EEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCC
Confidence 999999999997665 77888889999999998886443
No 80
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.90 E-value=0.18 Score=45.44 Aligned_cols=192 Identities=10% Similarity=0.071 Sum_probs=111.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRA 115 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~ 115 (294)
+..+.+=++++++-+|..|.++|+++. +++.-..+ .+.+-+.|.+.++-|+..|+-+...|... .++
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~--~~~m~~~l-----~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe---- 172 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQIT--DSTMLQAI-----ERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFD---- 172 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CTTTHHHH-----HHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHH----
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCC--CHHHHHHH-----HHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHH----
Confidence 566777778899999999999999988 34544433 34677889999999999999999988852 443
Q ss_pred HHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccch-hhHHHHh---h-Ch--H---HHHHHhhccCCCCC-CC----
Q psy15592 116 IKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCED-LKKSIID---D-GL--Q---VVVNHIIIPHSGWD-PV---- 180 (294)
Q Consensus 116 i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~-~r~~i~~---~-g~--i---~~L~~ll~~~s~~~-~~---- 180 (294)
++ .+.+..+-+++.+ .++.++.+++++|..+...+. .-..++. . ++ . -.++.++......+ ++
T Consensus 173 ~v-~~~~~~l~~ll~d-~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~ 250 (355)
T 3tjz_B 173 VV-KRWVNEAQEAASS-DNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSP 250 (355)
T ss_dssp HH-HTTHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------
T ss_pred HH-HHHHHHHHHHhcC-CCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHH
Confidence 23 2688999999988 589999999999999987543 1112221 2 22 1 11122221111111 00
Q ss_pred -------CCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccC
Q psy15592 181 -------SAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFR 253 (294)
Q Consensus 181 -------~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~ 253 (294)
-. .+....|+..|+.++..+...+.. .+ ..++..|..++.+ .++.++=-|+..|..+...
T Consensus 251 ~~~~l~~~L-~~~~~aVvyEa~k~I~~l~~~~~~---~~---~~a~~~L~~fLss------~d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 251 LFDFIESCL-RNKHEMVVYEAASAIVNLPGCSAK---EL---APAVSVLQLFCSS------PKAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp ------CCC-CCSSHHHHHHHHHHHTC-----------------CCCTHHHHHHS------SSSSSHHHHHHCC------
T ss_pred HHHHHHHHH-cCCChHHHHHHHHHHHhccCCCHH---HH---HHHHHHHHHHHcC------CCchHHHHHHHHHHHHHHH
Confidence 01 234466888888899888763321 11 2334566666642 3456776666666666555
Q ss_pred Cc
Q psy15592 254 CQ 255 (294)
Q Consensus 254 ~~ 255 (294)
..
T Consensus 318 ~P 319 (355)
T 3tjz_B 318 HP 319 (355)
T ss_dssp --
T ss_pred Cc
Confidence 43
No 81
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.42 E-value=0.11 Score=52.80 Aligned_cols=167 Identities=14% Similarity=0.176 Sum_probs=109.5
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc-cHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy15592 33 DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDP-NKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~-~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
.+.++.|.+.+...... +.|+.++..++..... ...+..-.+-+|.++..+.+....++..|-.++..+... -++.
T Consensus 53 ~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~-~~~~ 129 (986)
T 2iw3_A 53 EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNA-VNPV 129 (986)
T ss_dssp HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-SCGG
T ss_pred hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh-CCHH
Confidence 46778888888665333 8899999999843211 111222225689999999998888988887777666531 1332
Q ss_pred hHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHh--hChHHHHHHhhccCCCCCCCCCCccchhh
Q psy15592 112 NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIID--DGLQVVVNHIIIPHSGWDPVSAGETCWST 189 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~--~g~i~~L~~ll~~~s~~~~~~~~~~~~~~ 189 (294)
.- ...+|.|+..|+++.....+..++.+|..|+... .+++.. -.++|.+...+. +-+ ..
T Consensus 130 a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~-----d~k-------~~ 190 (986)
T 2iw3_A 130 AI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMW-----DTK-------KE 190 (986)
T ss_dssp GH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTT-----CSS-------HH
T ss_pred HH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcc-----cCc-------HH
Confidence 22 3457999999987667899999999999998754 333432 467788888873 322 45
Q ss_pred HHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHH
Q psy15592 190 IFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVV 226 (294)
Q Consensus 190 v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL 226 (294)
|.+.+..++..++..-. |++ .+..+|.|+..+
T Consensus 191 v~~~~~~~~~~~~~~~~-n~d----~~~~~~~~~~~~ 222 (986)
T 2iw3_A 191 VKAAATAAMTKATETVD-NKD----IERFIPSLIQCI 222 (986)
T ss_dssp HHHHHHHHHHHHGGGCC-CTT----TGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-Ccc----hhhhHHHHHHHh
Confidence 77778888877764311 111 245566666665
No 82
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.24 E-value=0.27 Score=47.59 Aligned_cols=104 Identities=15% Similarity=0.188 Sum_probs=82.1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCChhh
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG-HESPDVFRNACGALRNLSYGRQNDEN 112 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~aL~nLs~~~~~~~~ 112 (294)
.++..|..+|.++++++|..+...|..++..++. ...+.. -...++..|+ +++..++..++..|..++ ++.|
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~~~--~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~----~~~N 401 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAVKT--HIETVINALKTERDVSVRQRAVDLLYAMC----DRSN 401 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHHHT--THHHHHHHHTTCCCHHHHHHHHHHHHHHC----CHHH
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHHHH--HHHHHHHHhccCCCHhHHHHHHHHHHHHc----Chhh
Confidence 4577889999999999999999999999865432 233433 3678888898 899999999999999999 6777
Q ss_pred HHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 113 KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 113 k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
-..++ ..|.+.+.+ .+.+++..++..+..++.
T Consensus 402 v~~Iv-----~eL~~yl~~-~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 402 AQQIV-----AEMLSYLET-ADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HHHHH-----HHHHHHHHH-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence 66665 567777777 488888888888887763
No 83
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=94.78 E-value=0.41 Score=39.14 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=66.6
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhc
Q psy15592 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNA 119 (294)
Q Consensus 40 v~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~ 119 (294)
..=.+-+++..+.+-+.+|..++..+++.-..+. .-+..++.+++..=+..|+..+..+... +...- .
T Consensus 113 fanyrigd~kikIn~~yaLeeIaranP~l~~~v~-----rdi~smltskd~~Dkl~aLnFi~alGen--~~~yv-----~ 180 (253)
T 2db0_A 113 FANYRIGDEKTKINVSYALEEIAKANPMLMASIV-----RDFMSMLSSKNREDKLTALNFIEAMGEN--SFKYV-----N 180 (253)
T ss_dssp HHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHH-----HHHHHHTSCSSHHHHHHHHHHHHTCCTT--THHHH-----G
T ss_pred HHHHhcCCccceecHHHHHHHHHHhChHHHHHHH-----HHHHHHhcCCChHHHHHHHHHHHHHhcc--Ccccc-----C
Confidence 3333455666666666666666655554433333 3566677777766666666666665531 22222 2
Q ss_pred CChHHHHHHhccCCCHHHHHHHHHHHHHhccc-chhhHHH
Q psy15592 120 GGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSI 158 (294)
Q Consensus 120 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~r~~i 158 (294)
--+|.|+.+|.+ .+.-++..+..+|.++|.. +..|..+
T Consensus 181 PfLprL~aLL~D-~deiVRaSaVEtL~~lA~~npklRkii 219 (253)
T 2db0_A 181 PFLPRIINLLHD-GDEIVRASAVEALVHLATLNDKLRKVV 219 (253)
T ss_dssp GGHHHHHGGGGC-SSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cchHHHHHHHcC-cchhhhHHHHHHHHHHHHcCHHHHHHH
Confidence 346888899988 5889999999999999874 5655544
No 84
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.51 E-value=1.6 Score=44.13 Aligned_cols=178 Identities=11% Similarity=0.045 Sum_probs=93.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL-GHESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL-~s~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
++.|...|..++...+..|+.+|+-+-.. ..+...+. .|+..+ ...+..+++.++.+|.-+..| .++...
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vG-Tgn~~ai~------~LL~~~~e~~~e~vrR~aalgLGll~~g--~~e~~~ 544 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLG-TGKPEAIH------DMFTYSQETQHGNITRGLAVGLALINYG--RQELAD 544 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CCCHHHHH------HHHHHHHHCSCHHHHHHHHHHHHHHTTT--CGGGGH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcc-cCCHHHHH------HHHHHHhccCcHHHHHHHHHHHHhhhCC--ChHHHH
Confidence 77888888877777777777777755322 22333322 233322 344566777777777766654 322111
Q ss_pred HHH-----------hc----------------CChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHH
Q psy15592 115 AIK-----------NA----------------GGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVV 167 (294)
Q Consensus 115 ~i~-----------~~----------------g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L 167 (294)
.++ +. .+|+.|+..+.+..+..++..|+.+|..++..+. ..++-+
T Consensus 545 ~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rl 616 (963)
T 4ady_A 545 DLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRI 616 (963)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHH
Confidence 110 00 0122233333322344444444444444433221 112222
Q ss_pred HHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHH
Q psy15592 168 NHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCIL 247 (294)
Q Consensus 168 ~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L 247 (294)
+.++. +..+..+.+.+..+|..++..++ . ..+++.|..+. ++.+..|+.+|+.+|
T Consensus 617 v~~L~-----------~~~d~~VR~gAalALGli~aGn~-~-------~~aid~L~~L~------~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 617 VQLLS-----------KSHNAHVRCGTAFALGIACAGKG-L-------QSAIDVLDPLT------KDPVDFVRQAAMIAL 671 (963)
T ss_dssp TTTGG-----------GCSCHHHHHHHHHHHHHHTSSSC-C-------HHHHHHHHHHH------TCSSHHHHHHHHHHH
T ss_pred HHHHH-----------hcCCHHHHHHHHHHHHHhccCCC-c-------HHHHHHHHHHc------cCCCHHHHHHHHHHH
Confidence 22221 12235688888888888876553 1 12344444444 466778999999999
Q ss_pred HHhccCCc
Q psy15592 248 RNLSFRCQ 255 (294)
Q Consensus 248 ~nLs~~~~ 255 (294)
..+-.+.-
T Consensus 672 G~Ig~gtn 679 (963)
T 4ady_A 672 SMILIQQT 679 (963)
T ss_dssp HHHSTTCC
T ss_pred HHHhcCCc
Confidence 98776653
No 85
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=94.01 E-value=2.1 Score=34.98 Aligned_cols=181 Identities=15% Similarity=0.118 Sum_probs=108.6
Q ss_pred cCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCCCh
Q psy15592 32 RDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL-GHESPDVFRNACGALRNLSYGRQND 110 (294)
Q Consensus 32 ~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL-~s~~~~v~~~a~~aL~nLs~~~~~~ 110 (294)
+...++.++++|..+-=.++.+|..++..++...++.....+. .|+-++ ++..-.+...-+++++-++.- .+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~-----kL~vm~~ksEaIpltqeIa~a~G~la~i--~P 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK-----KLFSLLKKSEAIPLTQEIAKAFGQMAKE--KP 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHH-----HHHHHHHHCCSHHHHHHHHHHHHHHHHH--CH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHH-----HHHHHHhhcccCchHHHHHHHHhHHHHh--CH
Confidence 3445788899998777789999999999999777776666554 344443 455667766777888888841 33
Q ss_pred hhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc-cchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhh
Q psy15592 111 ENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWST 189 (294)
Q Consensus 111 ~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~ 189 (294)
+ ++ .+.+|.++.=.+-+ ++.++.+...+|..++. +|+.-..++++ +..++. +. + ..
T Consensus 103 e----~v-~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~~v~rd-----i~smlt--sk--d-----~~--- 159 (253)
T 2db0_A 103 E----LV-KSMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMASIVRD-----FMSMLS--SK--N-----RE--- 159 (253)
T ss_dssp H----HH-HHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHHHHHHH-----HHHHTS--CS--S-----HH---
T ss_pred H----HH-HhhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHHHHHHH-----HHHHhc--CC--C-----hH---
Confidence 2 22 13345555555554 88888888888887765 45543333322 333442 11 1 00
Q ss_pred HHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 190 IFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 190 v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
=.-.+...+.-|..+...+ + ...+|.|..+| ++.|+-++-.|+-+|.||+.-+
T Consensus 160 Dkl~aLnFi~alGen~~~y---v---~PfLprL~aLL------~D~deiVRaSaVEtL~~lA~~n 212 (253)
T 2db0_A 160 DKLTALNFIEAMGENSFKY---V---NPFLPRIINLL------HDGDEIVRASAVEALVHLATLN 212 (253)
T ss_dssp HHHHHHHHHHTCCTTTHHH---H---GGGHHHHHGGG------GCSSHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhccCccc---c---CcchHHHHHHH------cCcchhhhHHHHHHHHHHHHcC
Confidence 1123444444444433321 1 34567777777 4555567777777777776544
No 86
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.50 E-value=4.2 Score=41.09 Aligned_cols=194 Identities=13% Similarity=0.117 Sum_probs=102.1
Q ss_pred HHhhcCC---CHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-----Chh
Q psy15592 40 ISFLSNP---NNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQ-----NDE 111 (294)
Q Consensus 40 v~lL~s~---~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~-----~~~ 111 (294)
+..|+++ ++-+|..|+++|...+..- .+..+.. .++.++..|.++++.++..|+.+|.+++.... .+.
T Consensus 461 ~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~~--~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~ 536 (960)
T 1wa5_C 461 APDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIE--LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFI 536 (960)
T ss_dssp HHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHH--HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBS
T ss_pred HHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHHHHH--HHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccccccc
Confidence 3445666 8999999999999987431 2333333 47888888988899999999999999985200 011
Q ss_pred -hHHHHHh--cCChHHHHHHhccCC--CHH--HHHHHHHHHHHhccc--chhhHHHHhhChHHHHHHhhccCCCCCCCCC
Q psy15592 112 -NKRAIKN--AGGIPLLINLLRKTA--DAE--VKELVTGVLWNLSSC--EDLKKSIIDDGLQVVVNHIIIPHSGWDPVSA 182 (294)
Q Consensus 112 -~k~~i~~--~g~i~~Lv~lL~~~~--~~~--~~~~a~~~L~nLs~~--~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~ 182 (294)
.+..+.. ...++.|+.++.... +.. ..+.++.+|..+... ++... ... .+++.+...+......
T Consensus 537 ~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~~-~l~~~L~~~l~~~~~~----- 609 (960)
T 1wa5_C 537 FHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LFP-QLLAQFIEIVTIMAKN----- 609 (960)
T ss_dssp SCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GHH-HHHHHHHHHHHHHTTS-----
T ss_pred ccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHHHHHHHhC-----
Confidence 1222321 234455666665531 011 234556666655331 22222 111 1333444444211010
Q ss_pred CccchhhHHHhHhHHHHhhhcc-CHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 183 GETCWSTIFRNTSGVLRNASSA-GEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 183 ~~~~~~~v~~~a~~~L~nLa~~-~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
..+..+...+..+|..+... +++....+. ..++|.+...+.... .+..+.+..++..+....
T Consensus 610 --~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--~~~~p~~~~iL~~~~------~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 610 --PSNPRFTHYTFESIGAILNYTQRQNLPLLV--DSMMPTFLTVFSEDI------QEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHHHHHHHHTTC------TTTHHHHHHHHHHHHHHC
T ss_pred --CCCcHHHHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHHHHHHhhh------HhhHHHHHHHHHHHHHhc
Confidence 11233445566777766654 322222333 245666666664321 245666666666555433
No 87
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=92.49 E-value=1.2 Score=39.11 Aligned_cols=121 Identities=12% Similarity=0.047 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCcccHHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhH--HHHHhcCC
Q psy15592 46 PNNVIKANAAAYLQHLCYMDDPNKQKTRSL--GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENK--RAIKNAGG 121 (294)
Q Consensus 46 ~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~--g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k--~~i~~~g~ 121 (294)
..+.-+..+++++.|+- .++..+..+... ..++.+...+.+.+..++..++.++.|++.. ....+ .. ....
T Consensus 160 ~~p~n~ml~lR~l~NlF-~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~--~~~~~~~~~--~~~l 234 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCF-VGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVC--FHKDHNIEG--KAQC 234 (304)
T ss_dssp SCHHHHHHHHHHHHHGG-GSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHH--HHHSCCHHH--HHHH
T ss_pred CChHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH--HhhcCCchH--HHHH
Confidence 45667889999999987 466777777653 2345566666677999999999999999961 11000 01 0113
Q ss_pred hHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHH-hhChHHHHHHhh
Q psy15592 122 IPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSII-DDGLQVVVNHII 171 (294)
Q Consensus 122 i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~-~~g~i~~L~~ll 171 (294)
+..+..++....+.+....++.+|.+|...+.....+. ..|+...+..+.
T Consensus 235 l~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~ 285 (304)
T 3ebb_A 235 LSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYS 285 (304)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGG
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHH
Confidence 44555666665689999999999999987654333444 346666555554
No 88
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.44 E-value=4.8 Score=40.79 Aligned_cols=98 Identities=17% Similarity=0.089 Sum_probs=65.5
Q ss_pred hHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhH
Q psy15592 78 IPPLVKLLG-HESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKK 156 (294)
Q Consensus 78 i~~Lv~lL~-s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~ 156 (294)
|..|++.+. +.+..++..|+.+|..+..+ ++ ..++.++.+|....++.++..+..+|..++......
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g--~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~- 646 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLR--DY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ- 646 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSS--SC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccC--CH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-
Confidence 344555443 45677888888888888874 32 356778887766679999999999999996544322
Q ss_pred HHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhcc
Q psy15592 157 SIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSA 204 (294)
Q Consensus 157 ~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~ 204 (294)
.++..|..+.. ..+..|..+|.-+|..+...
T Consensus 647 -----~aid~L~~L~~------------D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 647 -----SAIDVLDPLTK------------DPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp -----HHHHHHHHHHT------------CSSHHHHHHHHHHHHHHSTT
T ss_pred -----HHHHHHHHHcc------------CCCHHHHHHHHHHHHHHhcC
Confidence 23345555552 12355788888888887644
No 89
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=91.54 E-value=4.7 Score=34.34 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=102.9
Q ss_pred HHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHH
Q psy15592 52 ANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHES-----PDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLI 126 (294)
Q Consensus 52 ~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~-----~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv 126 (294)
-+|...++-++ .+++.|..+.++...--|...|+..+ +-++..++++++.|... ++++.-.-+.+.+.+|..+
T Consensus 74 cnaLaLlQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~-dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 74 CNALALLQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKT-DEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGG-CCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhcc-CcHHHHHHHHhhhHHHHHH
Confidence 34455566677 57899999999986655555554432 45899999999999963 3566666667899999999
Q ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhhHHHHh-----hChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhh
Q psy15592 127 NLLRKTADAEVKELVTGVLWNLSSCEDLKKSIID-----DGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNA 201 (294)
Q Consensus 127 ~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~-----~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nL 201 (294)
+.|+.+ ++-.+.-|+-++..+-.++.+-.-+.. ..+..++..++..... .....+.++...|--.|
T Consensus 152 rime~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~--------~ps~RLLKhiircYlRL 222 (268)
T 2fv2_A 152 RIMESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSK--------EPSARLLKHVVRCYLRL 222 (268)
T ss_dssp HHHHHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTT--------SCCHHHHHHHHHHHHHH
T ss_pred HHHhhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHH
Confidence 999996 778888888888877666654333321 1122233333321101 11245889999999999
Q ss_pred hccCHHHHHHHHhh
Q psy15592 202 SSAGEYARKKLREC 215 (294)
Q Consensus 202 a~~~~~~r~~~~~~ 215 (294)
+.+. ..|.+++.+
T Consensus 223 sdn~-rar~aL~~~ 235 (268)
T 2fv2_A 223 SDNP-RAREALRQC 235 (268)
T ss_dssp TTSH-HHHHHHHHH
T ss_pred hcCH-HHHHHHHHh
Confidence 9865 588888764
No 90
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.32 E-value=2.3 Score=43.30 Aligned_cols=187 Identities=13% Similarity=0.137 Sum_probs=116.4
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CcccHHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCCCChh
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYM-DDPNKQKTRSLGGIPPLVKLLGHES-PDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~-~~~~k~~i~~~g~i~~Lv~lL~s~~-~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
+.++.+++.+......++..|..++..+... +++. + ...+|.|+..|.+.. =..+..|+.++..|+. ...
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a---~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~---~~~ 166 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA---I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVD---AAK 166 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG---H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HSH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH---H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHH---HhH
Confidence 3467777777777788887777666665532 2222 2 234889999997664 4788899999999994 212
Q ss_pred hHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHH
Q psy15592 112 NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIF 191 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~ 191 (294)
......=...||.+.+.+-+ ..++++..+..++-.++..=+|++. +..+|.|+..+.. + ..+
T Consensus 167 ~~~~~~~~~~~p~~~~~~~d-~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~-----p--------~~~- 228 (986)
T 2iw3_A 167 DQVALRMPELIPVLSETMWD-TKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIAD-----P--------TEV- 228 (986)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHC-----T--------THH-
T ss_pred HHHHHhccchhcchHhhccc-CcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcC-----h--------hhh-
Confidence 22222224677888888877 5899999999998888775555443 2566777777741 1 112
Q ss_pred HhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 192 RNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 192 ~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
-.|...|..-+...+-. +..+..++.+|..+.. .....++.+++.++-|+|.-..
T Consensus 229 ~~~~~~l~~~tfv~~v~-------~~~l~~~~p~l~r~l~--~~~~~~~r~~~~~~~n~~~lv~ 283 (986)
T 2iw3_A 229 PETVHLLGATTFVAEVT-------PATLSIMVPLLSRGLN--ERETGIKRKSAVIIDNMCKLVE 283 (986)
T ss_dssp HHHHHHHTTCCCCSCCC-------HHHHHHHHHHHHHHHT--SSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhcCeeEeeec-------chhHHHHHHHHHhhhc--cCcchhheeeEEEEcchhhhcC
Confidence 22333343333332201 1224455556665542 3345688899999999997653
No 91
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=88.92 E-value=1.1 Score=38.41 Aligned_cols=99 Identities=9% Similarity=0.066 Sum_probs=72.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
.+|.|++-+..+.+.+|..+-.++..++.-.+ -.. .++.++.-+++.|...+..++..+..+-- ..+-.
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~--~~~-----v~~~l~~g~ksKN~R~R~e~l~~l~~li~----~~G~~ 201 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG--PLK-----MTPMLLDALKSKNARQRSECLLVIEYYIT----NAGIS 201 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--HHH-----HHHHHHHGGGCSCHHHHHHHHHHHHHHHH----HHCSG
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC--HHH-----HHHHHHHHHccCCHHHHHHHHHHHHHHHH----hcCCC
Confidence 47899999988888888887777766653211 111 24567778899999999999988888863 11111
Q ss_pred HHHhcCCh---HHHHHHhccCCCHHHHHHHHHHHHHh
Q psy15592 115 AIKNAGGI---PLLINLLRKTADAEVKELVTGVLWNL 148 (294)
Q Consensus 115 ~i~~~g~i---~~Lv~lL~~~~~~~~~~~a~~~L~nL 148 (294)
...++ +.+.+++.+ .|..++..|+.++..+
T Consensus 202 ---~~~~l~~~~~ia~ll~D-~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 202 ---PLKSLSVEKTVAPFVGD-KDVNVRNAAINVLVAC 234 (266)
T ss_dssp ---GGGGGCHHHHHGGGGGC-SSHHHHHHHHHHHHHH
T ss_pred ---ccccccchHHHHHHHcC-CCHHHHHHHHHHHHHH
Confidence 24578 999999988 5999999999887644
No 92
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=88.67 E-value=13 Score=33.21 Aligned_cols=136 Identities=9% Similarity=0.018 Sum_probs=96.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q psy15592 38 EVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117 (294)
Q Consensus 38 ~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~ 117 (294)
.+++++.++|.+.|+-.=-++.+++...++ .+ =++..|.+=+.++++-++-.|.++|+++.. ++--..+
T Consensus 72 ~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l- 140 (355)
T 3tjz_B 72 AMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQAI- 140 (355)
T ss_dssp HHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHH-
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHH-
Confidence 456788999999998887788887754222 12 236678888889999999999999999994 4433333
Q ss_pred hcCChHHHHHHhccCCCHHHHHHHHHHHHHhcc-cchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhH
Q psy15592 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSG 196 (294)
Q Consensus 118 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~ 196 (294)
.+.+.+.|.+ .++-++..|+-+...|-. .++. + .+.+.-+..++.. + +..++.+|.+
T Consensus 141 ----~~~lk~~L~d-~~pyVRk~A~l~~~kL~~~~pe~----v-~~~~~~l~~ll~d------~------n~~V~~~Al~ 198 (355)
T 3tjz_B 141 ----ERYMKQAIVD-KVPSVSSSALVSSLHLLKCSFDV----V-KRWVNEAQEAASS------D------NIMVQYHALG 198 (355)
T ss_dssp ----HHHHHHHHTC-SSHHHHHHHHHHHHHHTTTCHHH----H-HTTHHHHHHHTTC------S------SHHHHHHHHH
T ss_pred ----HHHHHHHcCC-CCHHHHHHHHHHHHHHhccCHHH----H-HHHHHHHHHHhcC------C------CccHHHHHHH
Confidence 3567777877 599999999888887754 3342 2 2566666666631 1 1457789999
Q ss_pred HHHhhhccCH
Q psy15592 197 VLRNASSAGE 206 (294)
Q Consensus 197 ~L~nLa~~~~ 206 (294)
+|..+...+.
T Consensus 199 lL~ei~~~d~ 208 (355)
T 3tjz_B 199 LLYHVRKNDR 208 (355)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHhhch
Confidence 9999887554
No 93
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=87.94 E-value=2.6 Score=35.92 Aligned_cols=135 Identities=13% Similarity=0.038 Sum_probs=98.0
Q ss_pred ccccccccccCCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhhcC-CcccHHHHHhcCChHHHHHhhCCCCHHHHHHH
Q psy15592 23 KCRNSSLRWRDPNLTEVISFLSNP-----NNVIKANAAAYLQHLCYM-DDPNKQKTRSLGGIPPLVKLLGHESPDVFRNA 96 (294)
Q Consensus 23 ~~~~~~~i~~~g~i~~Lv~lL~s~-----~~~~~~~a~~~L~nL~~~-~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a 96 (294)
+.+.|....++...-.|-.+|+.. .+-+|..+..+++.+.+. +++.-..+.+.+.||..++.+..+++-.+..|
T Consensus 86 hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvA 165 (268)
T 2fv2_A 86 HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVA 165 (268)
T ss_dssp CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHH
Confidence 566677777888877777888643 246788999999998864 34455556677899999999999999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHh--------cCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHh
Q psy15592 97 CGALRNLSYGRQNDENKRAIKN--------AGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIID 160 (294)
Q Consensus 97 ~~aL~nLs~~~~~~~~k~~i~~--------~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~ 160 (294)
.-.+..+-. ++.+-.-+.. ...+..++.-+....++.+.+...++-.-|+.++..|+++.+
T Consensus 166 tfIlqKIL~---dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~ 234 (268)
T 2fv2_A 166 TFILQKILL---DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ 234 (268)
T ss_dssp HHHHHHHHH---SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHhc---cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888877775 4443222211 123344444444456889999999999999999988887764
No 94
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=87.34 E-value=9.3 Score=34.44 Aligned_cols=135 Identities=17% Similarity=0.227 Sum_probs=90.2
Q ss_pred CCCHHHHHHhhc-----------CCCHHHHHHHHHHHHHhhcCCcccHHHHHhc-CChHHHHHhhCCCCHHHHHHHHHHH
Q psy15592 33 DPNLTEVISFLS-----------NPNNVIKANAAAYLQHLCYMDDPNKQKTRSL-GGIPPLVKLLGHESPDVFRNACGAL 100 (294)
Q Consensus 33 ~g~i~~Lv~lL~-----------s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~-g~i~~Lv~lL~s~~~~v~~~a~~aL 100 (294)
.+|+..|+..|. ..+...+..+..+|..+. ++..-...+... .+|..|+..|.+.++.++..++..|
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL 186 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 186 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 567888888874 123466778888888887 455555566655 5789999999999999999999999
Q ss_pred HHhhcCCCCh-hh-HHH----------HHhcCChHHHHHHhccCCCHHHHHHHHHHHHHh-c-ccc--h----hhHHHHh
Q psy15592 101 RNLSYGRQND-EN-KRA----------IKNAGGIPLLINLLRKTADAEVKELVTGVLWNL-S-SCE--D----LKKSIID 160 (294)
Q Consensus 101 ~nLs~~~~~~-~~-k~~----------i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nL-s-~~~--~----~r~~i~~ 160 (294)
..++.- .. .+ ... ..+..-...++..|+...+.+.+..++ .|.|. - +.+ + .|..+..
T Consensus 187 ~~lc~~--~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m-~lIN~li~~~~dl~~R~~lR~ef~~ 263 (383)
T 3eg5_B 187 SALCIL--PQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCL-QLINALITPAEELDFRVHIRSELMR 263 (383)
T ss_dssp HHHHTC--CSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHH-HHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhC--cCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 888752 21 22 211 234455677888887755777776555 44443 2 222 2 2455567
Q ss_pred hChHHHHHHhh
Q psy15592 161 DGLQVVVNHII 171 (294)
Q Consensus 161 ~g~i~~L~~ll 171 (294)
.|+.+.+..+-
T Consensus 264 ~Gl~~il~~lr 274 (383)
T 3eg5_B 264 LGLHQVLQELR 274 (383)
T ss_dssp TTHHHHHHHHT
T ss_pred CChHHHHHHHh
Confidence 89988888743
No 95
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=87.28 E-value=14 Score=32.13 Aligned_cols=116 Identities=11% Similarity=0.013 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhcc---CCCHHHHHHHHHHHHHhcccchhhHHHH-hhCh
Q psy15592 88 ESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRK---TADAEVKELVTGVLWNLSSCEDLKKSII-DDGL 163 (294)
Q Consensus 88 ~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~---~~~~~~~~~a~~~L~nLs~~~~~r~~i~-~~g~ 163 (294)
..+..+..+++++.|+-. ++..+..+... ...+++.+.. +.+..++..+..++.|+|........+- ..-+
T Consensus 160 ~~p~n~ml~lR~l~NlF~---~~~g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~l 234 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFV---GQAGQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQC 234 (304)
T ss_dssp SCHHHHHHHHHHHHHGGG---SHHHHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred CChHHHHHHHHHHHHccC---CchhHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHH
Confidence 356678899999999986 67777777642 3444444432 3578899999999999986421100110 1113
Q ss_pred HHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHH
Q psy15592 164 QVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLID 220 (294)
Q Consensus 164 i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~ 220 (294)
...+..++.. ..+.+..+-+.-+|-+|...+.+.++.... -|...
T Consensus 235 l~~l~~il~~-----------~~d~EalyR~LvALGtL~~~~~~~~~lak~-l~~~~ 279 (304)
T 3ebb_A 235 LSLISTILEV-----------VQDLEATFRLLVALGTLISDDSNAVQLAKS-LGVDS 279 (304)
T ss_dssp HHHHHHHHTT-----------CCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHH
T ss_pred HHHHHHHHhc-----------cCCHHHHHHHHHHHHHHHhCChhHHHHHHH-cCHHH
Confidence 4555555521 112445666667888888766655554444 24433
No 96
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=86.85 E-value=5.9 Score=32.99 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=85.9
Q ss_pred CCCHHHHHHhhcC----C-------CHHHHHHHHHHHHHhhcCCcccHHHHHhc-CChHHHHHhhCCCCHHHHHHHHHHH
Q psy15592 33 DPNLTEVISFLSN----P-------NNVIKANAAAYLQHLCYMDDPNKQKTRSL-GGIPPLVKLLGHESPDVFRNACGAL 100 (294)
Q Consensus 33 ~g~i~~Lv~lL~s----~-------~~~~~~~a~~~L~nL~~~~~~~k~~i~~~-g~i~~Lv~lL~s~~~~v~~~a~~aL 100 (294)
.+|+..|+..|.. + +...+..+..+|..+. ++......+... +++..|+..|.++++.++..++..|
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 4677777777642 1 3456778888888887 445555556654 6789999999999999999998888
Q ss_pred HHhhcCCCCh-hh-HHHH----------HhcCChHHHHHHhccCCCHHHHHHHHHHHHHh-c-ccc--h----hhHHHHh
Q psy15592 101 RNLSYGRQND-EN-KRAI----------KNAGGIPLLINLLRKTADAEVKELVTGVLWNL-S-SCE--D----LKKSIID 160 (294)
Q Consensus 101 ~nLs~~~~~~-~~-k~~i----------~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nL-s-~~~--~----~r~~i~~ 160 (294)
..++.- .. .+ ...+ .+..-...+++.++...+.+.+..++ .+.|. - +.+ + .|..+..
T Consensus 121 ~~lc~~--~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m-~lIN~li~~~~dl~~R~~lR~ef~~ 197 (233)
T 2f31_A 121 SALCIL--PQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCL-QLINALITPAEELDFRVHIRSELMR 197 (233)
T ss_dssp HHHHTC--SSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHH-HHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhC--CCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 877752 21 12 2222 23345566777777545666665555 44444 2 222 2 2455556
Q ss_pred hChHHHHHHhh
Q psy15592 161 DGLQVVVNHII 171 (294)
Q Consensus 161 ~g~i~~L~~ll 171 (294)
.|+.+.+..+-
T Consensus 198 ~Gl~~il~~l~ 208 (233)
T 2f31_A 198 LGLHQVLQELR 208 (233)
T ss_dssp TTHHHHHHHHH
T ss_pred CChHHHHHHHh
Confidence 88888887665
No 97
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=85.79 E-value=5 Score=40.28 Aligned_cols=107 Identities=16% Similarity=0.142 Sum_probs=68.9
Q ss_pred CHHHHHHhh---cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy15592 35 NLTEVISFL---SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDE 111 (294)
Q Consensus 35 ~i~~Lv~lL---~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~ 111 (294)
.++.++..+ .++++.++..+++++...+..-......+ ...++.|+..|.+ +.++..|+.+|.+++. .
T Consensus 487 ~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~~--~~V~~~A~~al~~l~~-----~ 557 (963)
T 2x19_B 487 VVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLPLVLHALGN--PELSVSSVSTLKKICR-----E 557 (963)
T ss_dssp HHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHHHHHTTC--GGGHHHHHHHHHHHHH-----H
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHhCC--chHHHHHHHHHHHHHH-----H
Confidence 355565554 34688899999999998773211222221 2568889988855 8899999999999994 1
Q ss_pred hHHHHHh--cCChHHHHHHhccC-CCHHHHHHHHHHHHHhcc
Q psy15592 112 NKRAIKN--AGGIPLLINLLRKT-ADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 112 ~k~~i~~--~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~nLs~ 150 (294)
.+..+.. ...+..|..++... -+...+..+..++..++.
T Consensus 558 ~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 558 CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 2222321 12233444555542 256788888888888865
No 98
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=84.44 E-value=15 Score=30.53 Aligned_cols=125 Identities=14% Similarity=0.179 Sum_probs=78.0
Q ss_pred hhccccccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-cc-HHHHH----------hcCChHHHHHh
Q psy15592 17 SPSLNKKCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDD-PN-KQKTR----------SLGGIPPLVKL 84 (294)
Q Consensus 17 ~~l~~l~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~-~~-k~~i~----------~~g~i~~Lv~l 84 (294)
.+++|....-...+.....+..++..|.++++.++..+...|..+|...+ +. ...+. +..-+.++++.
T Consensus 79 kalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~ 158 (233)
T 2f31_A 79 KAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDG 158 (233)
T ss_dssp HHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHT
T ss_pred HHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 56666543344445556778999999999999999999999988886543 23 33332 22356778888
Q ss_pred hCC-CCHHHHHHHHHHHHHhhcCCCChhhHHHHH---hcCChHHHHHHhccCCCHHHHHHH
Q psy15592 85 LGH-ESPDVFRNACGALRNLSYGRQNDENKRAIK---NAGGIPLLINLLRKTADAEVKELV 141 (294)
Q Consensus 85 L~s-~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~---~~g~i~~Lv~lL~~~~~~~~~~~a 141 (294)
+++ ++.+.+..++..+-.+...-.+...|..++ ..-|+..+++-|+...++++..+.
T Consensus 159 l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi 219 (233)
T 2f31_A 159 LKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQL 219 (233)
T ss_dssp TSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHHH
Confidence 874 566777777766655554211233344443 234555555666654566665544
No 99
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=83.21 E-value=4.2 Score=41.01 Aligned_cols=107 Identities=15% Similarity=0.067 Sum_probs=67.5
Q ss_pred CHHHHHHhh---c--CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCC
Q psy15592 35 NLTEVISFL---S--NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQN 109 (294)
Q Consensus 35 ~i~~Lv~lL---~--s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~ 109 (294)
.++.++.++ . .+++.++..+++++..++..-.++...+. ..++.|+..| + +.++..|+.++.+++.
T Consensus 502 ~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l-~--~~v~~~A~~al~~l~~---- 572 (971)
T 2x1g_F 502 QIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGL-N--SSMSAQATLGLKELCR---- 572 (971)
T ss_dssp HHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHH-H--SSCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHh-C--hHHHHHHHHHHHHHHH----
Confidence 455555544 3 24889999999999987732111122222 2356777777 2 7899999999999994
Q ss_pred hhhHHHHH--hcCChHHHHHHhccC-CCHHHHHHHHHHHHHhccc
Q psy15592 110 DENKRAIK--NAGGIPLLINLLRKT-ADAEVKELVTGVLWNLSSC 151 (294)
Q Consensus 110 ~~~k~~i~--~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~nLs~~ 151 (294)
..+..+. -...+..+..++... .+...+..+..++..++..
T Consensus 573 -~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 573 -DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred -HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 2333333 124445566667652 2578888888888888653
No 100
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=83.20 E-value=16 Score=32.98 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=87.6
Q ss_pred CCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCCcccHHHHHhc-CChHHHHHhhCCCCHHHHHHHHHHH
Q psy15592 33 DPNLTEVISFLSN-----------PNNVIKANAAAYLQHLCYMDDPNKQKTRSL-GGIPPLVKLLGHESPDVFRNACGAL 100 (294)
Q Consensus 33 ~g~i~~Lv~lL~s-----------~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~-g~i~~Lv~lL~s~~~~v~~~a~~aL 100 (294)
.+|+..|+..|.. .+...+..+..+|..+. ++......+... .++..|+..|.+.++.++..++..|
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL 124 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 124 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 4677777777641 13466778888888887 444455555555 6789999999999999999888888
Q ss_pred HHhhcCCCCh-hh-HHH----------HHhcCChHHHHHHhccCCCHHHHHHHHHHHHHh--cccc------hhhHHHHh
Q psy15592 101 RNLSYGRQND-EN-KRA----------IKNAGGIPLLINLLRKTADAEVKELVTGVLWNL--SSCE------DLKKSIID 160 (294)
Q Consensus 101 ~nLs~~~~~~-~~-k~~----------i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nL--s~~~------~~r~~i~~ 160 (294)
..++.- .. .+ ... ..+..-...++..++...+.+.+..++ .+.|. .+.+ ..|..+..
T Consensus 125 ~alc~~--~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m-~lIN~lv~~~~dl~~R~~LR~Ef~~ 201 (386)
T 2bnx_A 125 SALCIL--PQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCL-QLINALITPAEELDFRVHIRSELMR 201 (386)
T ss_dssp HHHHTC--CSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHH-HHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHcC--CCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 777752 21 12 111 223445567888887655777765555 44444 2223 23556667
Q ss_pred hChHHHHHHhh
Q psy15592 161 DGLQVVVNHII 171 (294)
Q Consensus 161 ~g~i~~L~~ll 171 (294)
.|+.+.+..+-
T Consensus 202 ~GL~~il~~Lr 212 (386)
T 2bnx_A 202 LGLHQVLQELR 212 (386)
T ss_dssp TTHHHHHHHHT
T ss_pred CChHHHHHHHh
Confidence 89988887665
No 101
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=83.09 E-value=20 Score=32.30 Aligned_cols=126 Identities=13% Similarity=0.176 Sum_probs=81.1
Q ss_pred hhccccccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-cc-HHHHH----------hcCChHHHHHh
Q psy15592 17 SPSLNKKCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDD-PN-KQKTR----------SLGGIPPLVKL 84 (294)
Q Consensus 17 ~~l~~l~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~-~~-k~~i~----------~~g~i~~Lv~l 84 (294)
.+++|....-...+.....+..|+..|.++++.++..+...|..+|.... ++ ...+. +..-+.+++..
T Consensus 145 kalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~ 224 (383)
T 3eg5_B 145 KAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDG 224 (383)
T ss_dssp HHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHT
T ss_pred HHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 57777544444455566779999999999999999999999999886543 33 33332 23457889999
Q ss_pred hCC-CCHHHHHHHHHHHHHhhcCCCChhhHHHHH---hcCChHHHHHHhccCCCHHHHHHHH
Q psy15592 85 LGH-ESPDVFRNACGALRNLSYGRQNDENKRAIK---NAGGIPLLINLLRKTADAEVKELVT 142 (294)
Q Consensus 85 L~s-~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~---~~g~i~~Lv~lL~~~~~~~~~~~a~ 142 (294)
|++ .+.+.+..++..+-.+..+..+-..|..++ ..-|+..++.-|+...++.+..+.-
T Consensus 225 L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Qi~ 286 (383)
T 3eg5_B 225 LKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLC 286 (383)
T ss_dssp TSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHHHHH
Confidence 987 577888777766655554211333344443 2345555555576655666665433
No 102
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=81.11 E-value=34 Score=34.13 Aligned_cols=160 Identities=13% Similarity=0.037 Sum_probs=88.5
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhh---CCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcC
Q psy15592 44 SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL---GHESPDVFRNACGALRNLSYGRQNDENKRAIKNAG 120 (294)
Q Consensus 44 ~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL---~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g 120 (294)
.+.+-..++.+..+++.++..-.+.. ..-++.++..+ .++++.++..+++++..++. .-..+. ... ..
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~--~l~~~~-~~l-~~ 529 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSE--WLADHP-VMI-NS 529 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHH--HHHHCH-HHH-TT
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH--HHHhCH-HHH-HH
Confidence 45567788888899998884322111 11123333333 34678899999999998884 112222 233 46
Q ss_pred ChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHh--hChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHH
Q psy15592 121 GIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIID--DGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVL 198 (294)
Q Consensus 121 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~--~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L 198 (294)
.++.|+..|.+ +.++..++.+|.+++.. .+..+.. ..++..+..++.. +. ...........++
T Consensus 530 vl~~l~~~l~~---~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~--~~--------~~~~~~~~~~eai 594 (963)
T 2x19_B 530 VLPLVLHALGN---PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMK--QI--------HKTSQCMWLMQAL 594 (963)
T ss_dssp THHHHHHHTTC---GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHT--TC--------SCHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhcc--CC--------CChHHHHHHHHHH
Confidence 88888888843 67899999999999852 3333321 2344445555531 10 0122344444555
Q ss_pred Hhhhcc-CHHHHHHHHhhcCcHHHHHHHHHHh
Q psy15592 199 RNASSA-GEYARKKLRECEGLIDSLLYVVKSA 229 (294)
Q Consensus 199 ~nLa~~-~~~~r~~~~~~~g~i~~Lv~lL~~~ 229 (294)
..++.. +++...... ..+++.+...+...
T Consensus 595 ~~i~~~~~~~~~~~~~--~~l~~~l~~~l~~~ 624 (963)
T 2x19_B 595 GFLLSALQVEEILKNL--HSLISPYIQQLEKL 624 (963)
T ss_dssp HHHHTTSCHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHH--HHHHHHHHHHHHHH
Confidence 555432 222333222 24566666666543
No 103
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=80.32 E-value=7.7 Score=32.79 Aligned_cols=106 Identities=12% Similarity=0.215 Sum_probs=68.0
Q ss_pred CHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc--CCCChh
Q psy15592 35 NLTEVISF-LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSY--GRQNDE 111 (294)
Q Consensus 35 ~i~~Lv~l-L~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~--~~~~~~ 111 (294)
.++.|++- |.++.+.++..+..++..++... .....+ ++.++..+++.++.++..++..|..+.. |.....
T Consensus 103 ~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-~~~~~~-----~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~ 176 (278)
T 4ffb_C 103 WTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-TSITQS-----VELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVN 176 (278)
T ss_dssp HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-SSSHHH-----HHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-CcHHHH-----HHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 45666754 67788888888887777666332 111222 3567778889999999999988887762 100000
Q ss_pred hHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhc
Q psy15592 112 NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS 149 (294)
Q Consensus 112 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs 149 (294)
.+..+ ...++.+..++.+ .+..++..+..++..+-
T Consensus 177 ~k~~l--~~i~~~l~k~l~d-~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 177 VQTFL--PELLKHVPQLAGH-GDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHH--HHHGGGHHHHHTC-SSHHHHHHHHHHHHHHH
T ss_pred chhHH--HHHHHHHHHHHhC-CcHHHHHHHHHHHHHHH
Confidence 11111 1234567778877 59999999998887763
No 104
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=79.88 E-value=44 Score=32.12 Aligned_cols=182 Identities=14% Similarity=0.054 Sum_probs=109.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc--CChHHHHHhhCC-------CC---HHHHHHHHHHHHH
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL--GGIPPLVKLLGH-------ES---PDVFRNACGALRN 102 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~--g~i~~Lv~lL~s-------~~---~~v~~~a~~aL~n 102 (294)
..+.|+.-|-++.=++|--|+..|+.+.+............ ...-.|+.+|.- ++ ..|++.|+.+|..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 45677777778888999999999999775432100000011 223344444431 12 3799999999999
Q ss_pred hhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCC
Q psy15592 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSA 182 (294)
Q Consensus 103 Ls~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~ 182 (294)
+ .+ .+++ ...+..|+..+.. ...+++..++-.|..+ .+.-.. =.++++.+..-|.
T Consensus 255 L-~h-Lp~e-------~~IL~qLV~~l~~-~~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL~---------- 309 (800)
T 3oc3_A 255 I-YP-LIGP-------NDIIEQLVGFLDS-GDWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLLS---------- 309 (800)
T ss_dssp H-TT-TSCS-------CCHHHHHTTGGGC-SCHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHTT----------
T ss_pred H-Hh-CChh-------HHHHHHHHhhcCC-CCeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhcC----------
Confidence 8 63 2332 3445555554455 5899999999999998 211111 1344555555552
Q ss_pred CccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCc
Q psy15592 183 GETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255 (294)
Q Consensus 183 ~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 255 (294)
..+.+|...|+.+|.-++ . ...++.++..+=....+.+.-....-..+..|..|+....
T Consensus 310 --D~DDDVRAVAAetLiPIA-~-----------p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~ 368 (800)
T 3oc3_A 310 --SPDEDIKLLSAELLCHFP-I-----------TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP 368 (800)
T ss_dssp --CSSHHHHHHHHHHHTTSC-C-----------SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT
T ss_pred --CcccHHHHHHHHHhhhhc-c-----------hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc
Confidence 123579999999999998 1 1234444444433333333334567777888888887763
No 105
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=79.76 E-value=9.8 Score=38.38 Aligned_cols=100 Identities=11% Similarity=0.034 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcccHHHHH---hcCCh-H----HHHHhhCCC---CHHHHHHHHHHHHHhhcCCCChhhH
Q psy15592 45 NPNNVIKANAAAYLQHLCYMDDPNKQKTR---SLGGI-P----PLVKLLGHE---SPDVFRNACGALRNLSYGRQNDENK 113 (294)
Q Consensus 45 s~~~~~~~~a~~~L~nL~~~~~~~k~~i~---~~g~i-~----~Lv~lL~s~---~~~v~~~a~~aL~nLs~~~~~~~~k 113 (294)
+++-..++.|..+++.++.........+. ..--+ + .++..|.++ ++.++..|+++|..++.. - .+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~--~--~~ 491 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ--L--TK 491 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG--S--CH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh--C--CH
Confidence 45556788888888888732110000000 00011 1 223334555 889999999999999851 1 22
Q ss_pred HHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhccc
Q psy15592 114 RAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151 (294)
Q Consensus 114 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 151 (294)
..+ ...++.++..|.+ .+..++..|+.+|.++...
T Consensus 492 ~~l--~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 492 AQL--IELMPILATFLQT-DEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHH--HHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTC
T ss_pred HHH--HHHHHHHHHHhCC-CChhHHHHHHHHHHHHHhc
Confidence 222 2356778888876 4899999999999998763
No 106
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=79.68 E-value=50 Score=33.04 Aligned_cols=135 Identities=8% Similarity=0.051 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhcc----CCCHHHHHHHHHHHHHhccc-chhhHHHHhhC
Q psy15592 88 ESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRK----TADAEVKELVTGVLWNLSSC-EDLKKSIIDDG 162 (294)
Q Consensus 88 ~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~----~~~~~~~~~a~~~L~nLs~~-~~~r~~i~~~g 162 (294)
.+-..++.++.+++.++.+ ..... ...++.++.++.. ..++.++..++++|..++.. .... ..+ ..
T Consensus 476 ~~w~~~eaal~~l~~iae~--~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l-~~ 546 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEH--FGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYI-PP 546 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HH
T ss_pred CcHHHHHHHHHHHHHHHhh--cChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHH-HH
Confidence 3456788889999999853 22211 1344555554421 13788999999999988753 1111 111 12
Q ss_pred hHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhh-cCcHHHHHHHHHHhHhhcCCCcchHH
Q psy15592 163 LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLREC-EGLIDSLLYVVKSAIEKSNIGNKSVE 241 (294)
Q Consensus 163 ~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~-~g~i~~Lv~lL~~~~~~~~~~~~~~e 241 (294)
+++.+...+. ..+...|++++.+++... +..+..+ +.++..|..++. ....+.+.++
T Consensus 547 vl~~l~~~l~---------------~~v~~~A~~al~~l~~~~---~~~l~p~~~~ll~~l~~~l~----~~~~~~~~~~ 604 (971)
T 2x1g_F 547 AINLLVRGLN---------------SSMSAQATLGLKELCRDC---QLQLKPYADPLLNACHASLN----TGRMKNSDSV 604 (971)
T ss_dssp HHHHHHHHHH---------------SSCHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHH----STTSCHHHHH
T ss_pred HHHHHHHHhC---------------hHHHHHHHHHHHHHHHHH---HHhccccHHHHHHHHHHHHc----CCCCChHHHH
Confidence 3344443331 127889999999999533 3344332 233444444443 2234457777
Q ss_pred HHHHHHHHhccC
Q psy15592 242 NCVCILRNLSFR 253 (294)
Q Consensus 242 ~a~~~L~nLs~~ 253 (294)
.++.++..+...
T Consensus 605 ~~~~ai~~i~~~ 616 (971)
T 2x1g_F 605 RLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 777777776543
No 107
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=78.62 E-value=25 Score=29.48 Aligned_cols=106 Identities=15% Similarity=0.135 Sum_probs=68.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc---ccHHHHH--hcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhcCCC
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDD---PNKQKTR--SLGGIPPLVKL-LGHESPDVFRNACGALRNLSYGRQ 108 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~---~~k~~i~--~~g~i~~Lv~l-L~s~~~~v~~~a~~aL~nLs~~~~ 108 (294)
.++.+-+.+...|..++..++.++..++..-. ..+.... -...++.|+.- |.+..+.++..+..++..+..
T Consensus 56 ~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~--- 132 (278)
T 4ffb_C 56 DPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG--- 132 (278)
T ss_dssp CTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH---
Confidence 35566778889999999999999888763211 1122222 22357888864 788888999888888877764
Q ss_pred ChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhc
Q psy15592 109 NDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS 149 (294)
Q Consensus 109 ~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs 149 (294)
.......+ ++.++..+++ .++.++..++.+|..+-
T Consensus 133 ~~~~~~~~-----~e~l~~~l~~-Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 133 LDTSITQS-----VELVIPFFEK-KLPKLIAAAANCVYELM 167 (278)
T ss_dssp TSSSSHHH-----HHHHGGGGGC-SCHHHHHHHHHHHHHHH
T ss_pred hcCcHHHH-----HHHHHHHHhc-cCHHHHHHHHHHHHHHH
Confidence 11111111 2445555666 58899988888887763
No 108
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=73.70 E-value=47 Score=29.75 Aligned_cols=126 Identities=13% Similarity=0.173 Sum_probs=78.2
Q ss_pred hhccccccccccccccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-cc-HHHHH----------hcCChHHHHHh
Q psy15592 17 SPSLNKKCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDD-PN-KQKTR----------SLGGIPPLVKL 84 (294)
Q Consensus 17 ~~l~~l~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~-~~-k~~i~----------~~g~i~~Lv~l 84 (294)
.+++|....-...+....++..++..|.++++.++..+...|..+|...+ +. ...+. +..-+.+++..
T Consensus 83 kalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~ 162 (386)
T 2bnx_A 83 KAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDG 162 (386)
T ss_dssp HHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 56666543333445556778999999999999999999988988886543 22 22332 23356778888
Q ss_pred hC-CCCHHHHHHHHHHHHHhhcCCCChhhHHHHH---hcCChHHHHHHhccCCCHHHHHHHH
Q psy15592 85 LG-HESPDVFRNACGALRNLSYGRQNDENKRAIK---NAGGIPLLINLLRKTADAEVKELVT 142 (294)
Q Consensus 85 L~-s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~---~~g~i~~Lv~lL~~~~~~~~~~~a~ 142 (294)
+. +.+.+.+..++..+-.+...-.+-..|..++ ..-|+..++.-|+...++.+..+.-
T Consensus 163 l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi~ 224 (386)
T 2bnx_A 163 LKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLC 224 (386)
T ss_dssp TSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHHHH
Confidence 87 4566777777766655554211223344443 2345555566666655666665533
No 109
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=70.03 E-value=39 Score=31.47 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHH
Q psy15592 45 NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPL 124 (294)
Q Consensus 45 s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~ 124 (294)
.+++..+..|+..|.......++.... +|.+++.++.+++..++..|.+.|..++. + ++-.. .+..
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck---~-~~i~k-----iaDv 104 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFAT---G-ENLPR-----VADI 104 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCC---T-TCHHH-----HHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhh---h-hhhhh-----HHHH
Confidence 567889999999999877777776654 36689999999999999999999999995 3 33333 3478
Q ss_pred HHHHhccCCCHH
Q psy15592 125 LINLLRKTADAE 136 (294)
Q Consensus 125 Lv~lL~~~~~~~ 136 (294)
|+++|... +..
T Consensus 105 L~QlLqtd-d~~ 115 (507)
T 3u0r_A 105 LTQLLQTD-DSA 115 (507)
T ss_dssp HHHHTTCC-CHH
T ss_pred HHHHHhcc-chH
Confidence 88888763 443
No 110
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=68.16 E-value=3 Score=35.28 Aligned_cols=89 Identities=9% Similarity=0.079 Sum_probs=44.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHH-----HHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHH-----HHh
Q psy15592 79 PPLVKLLGHESPDVFRNACGAL-----RNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVL-----WNL 148 (294)
Q Consensus 79 ~~Lv~lL~s~~~~v~~~a~~aL-----~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L-----~nL 148 (294)
+.|..++++++..|+..++..+ ..+.. +.+...|..+...-..+.|..++++ ++..++..+...| ..+
T Consensus 125 ~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~-D~d~~VR~~aa~~l~~~ll~~ll~D-~d~~VR~aaa~~l~~~~L~~L 202 (244)
T 1lrv_A 125 EQLEQMAADRDYLVRAYVVQRIPPGRLFRFMR-DEDRQVRKLVAKRLPEESLGLMTQD-PEPEVRRIVASRLRGDDLLEL 202 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTT-CSCHHHHHHHHHHSCGGGGGGSTTC-SSHHHHHHHHHHCCGGGGGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHc-CCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHhCCHHHHHHH
Confidence 3455556666777777666532 11222 2344455555554444455555555 5777777766432 223
Q ss_pred cccc--hhhHHHHhhChHHHHHH
Q psy15592 149 SSCE--DLKKSIIDDGLQVVVNH 169 (294)
Q Consensus 149 s~~~--~~r~~i~~~g~i~~L~~ 169 (294)
..++ ..|..+.+.-.++.+..
T Consensus 203 l~D~d~~VR~~aa~~l~~~~L~~ 225 (244)
T 1lrv_A 203 LHDPDWTVRLAAVEHASLEALRE 225 (244)
T ss_dssp GGCSSHHHHHHHHHHSCHHHHHH
T ss_pred HcCCCHHHHHHHHHcCCHHHHHH
Confidence 3322 44555554322444443
No 111
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=65.74 E-value=18 Score=36.99 Aligned_cols=117 Identities=9% Similarity=0.047 Sum_probs=65.8
Q ss_pred HHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCCh
Q psy15592 36 LTEVISFLSN-----PNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQND 110 (294)
Q Consensus 36 i~~Lv~lL~s-----~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~ 110 (294)
++.|+.++.. +...++..++++|+..+.--..+...+. ..+..|+..|..+++.++..||+++.+|+.
T Consensus 497 i~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl~~L~~~l~~~~~~v~~~A~~al~~l~~----- 569 (1023)
T 4hat_C 497 IKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQ----- 569 (1023)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-----
Confidence 5566666642 2223445666888765521111122222 235667777777889999999999999994
Q ss_pred hhHHHHHh--c----CChHHHHH----HhccCCCHHHHHHHHHHHHHhccc---chhhHHHHh
Q psy15592 111 ENKRAIKN--A----GGIPLLIN----LLRKTADAEVKELVTGVLWNLSSC---EDLKKSIID 160 (294)
Q Consensus 111 ~~k~~i~~--~----g~i~~Lv~----lL~~~~~~~~~~~a~~~L~nLs~~---~~~r~~i~~ 160 (294)
+++..+.. . --++.++. .... -+......+..++..+... ...+...++
T Consensus 570 ~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~-l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~ 631 (1023)
T 4hat_C 570 KCKYHFVIQQPRESEPFIQTIIRDIQKTTAD-LQPQQVHTFYKACGIIISEERSVAERNRLLS 631 (1023)
T ss_dssp HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT-SCHHHHHHHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred HHHHHhhccCCCCCchhHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 45656642 1 12344433 3332 3556666777777777543 233555544
No 112
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=65.47 E-value=15 Score=28.86 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=53.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhc
Q psy15592 77 GIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS 149 (294)
Q Consensus 77 ~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs 149 (294)
++..|.+-|++.++.++..|+..|-.+... ....-...+....-+..|++++....++.++..++..+..-+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkN-cG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVAN-CGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-TCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-hhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 355788888999999999999888777751 124456666667778888888876567888888887765554
No 113
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=65.12 E-value=38 Score=31.54 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=45.5
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy15592 33 DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLS 104 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs 104 (294)
..++..++++....+..+|.+|...|-.+|.. ++-..+.+ .|+++|.++++.-....-.+|..|-
T Consensus 64 ~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~kiaD-----vL~QlLqtdd~~E~~~V~~sL~sll 128 (507)
T 3u0r_A 64 DSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRVAD-----ILTQLLQTDDSAEFNLVNNALLSIF 128 (507)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHHHH-----HHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhHHH-----HHHHHHhccchHHHHHHHHHHHHHH
Confidence 34577888888888889999999999988853 55555544 7899999887654444444444443
No 114
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=61.40 E-value=12 Score=38.44 Aligned_cols=98 Identities=8% Similarity=-0.024 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCcc--cHHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcCCCChhhHHHHHh
Q psy15592 46 PNNVIKANAAAYLQHLCYMDDP--NKQKTRSLGGIPPLVKLLGH-----ESPDVFRNACGALRNLSYGRQNDENKRAIKN 118 (294)
Q Consensus 46 ~~~~~~~~a~~~L~nL~~~~~~--~k~~i~~~g~i~~Lv~lL~s-----~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~ 118 (294)
.+-..++.++++++.++..-.+ .+..+.. .++.|+.++.. ....++..++++|+..+. .-..+.. ..
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~--vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~--wl~~~~~-~L- 538 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVT--VIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPR--FLKAHWN-FL- 538 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHH--HHHHCHH-HH-
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHH--HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHH--HHhccHH-HH-
Confidence 4667889999999998843222 2223333 47888888863 122345567788877662 1111111 11
Q ss_pred cCChHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q psy15592 119 AGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 119 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 150 (294)
...+..|++.|.+ .++.++..|++++.+|+.
T Consensus 539 ~~vl~~L~~~l~~-~~~~v~~~A~~al~~l~~ 569 (1023)
T 4hat_C 539 RTVILKLFEFMHE-THEGVQDMACDTFIKIVQ 569 (1023)
T ss_dssp HHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHH
Confidence 1233445555544 478999999999999986
No 115
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.66 E-value=12 Score=31.08 Aligned_cols=71 Identities=13% Similarity=0.211 Sum_probs=51.7
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhc
Q psy15592 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS 149 (294)
Q Consensus 78 i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs 149 (294)
+..|.+-|++.++.++..|+.+|-.+... ....-...|.....+..|+++++...+..+++.++..+...+
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkN-cG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKN-CGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHH-HCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHh-cchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 55788888999999999999888888741 123335566666667778888876667888888887766554
No 116
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=56.54 E-value=21 Score=30.43 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=48.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCh---HHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGI---PPLVKLLGHESPDVFRNACGALRNLS 104 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i---~~Lv~lL~s~~~~v~~~a~~aL~nLs 104 (294)
..+.+++-+++.|...|..++..+..+-..++-. ...++ +.+..++.+.+..++..|..++..+=
T Consensus 168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 168 MTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3556777778889999998888887765322222 23478 99999999999999999988875443
No 117
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=55.78 E-value=29 Score=26.72 Aligned_cols=73 Identities=11% Similarity=0.045 Sum_probs=54.3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhcc-----CCCHHHHHHHHHHHHHhcc
Q psy15592 77 GIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRK-----TADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 77 ~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~-----~~~~~~~~~a~~~L~nLs~ 150 (294)
++..|.+-|++.++.++..|+..|-.+... ....-...+.....+..|++++.. ..+..++..++.++..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkN-CG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKS-CGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-CCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-cCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 356788888999999999999888888742 134446677777778889999863 2478888888877766543
No 118
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=55.77 E-value=22 Score=26.96 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=50.3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhc
Q psy15592 77 GIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS 149 (294)
Q Consensus 77 ~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs 149 (294)
++..|.+-|++.++.++..|+..|-.+... ....-...+....-+..|+++++. .++.++..++..+..-+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkN-cG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSN-CGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-SCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-cCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 356777788888999998888877777641 123335556566677778888866 48888888887776554
No 119
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=53.36 E-value=12 Score=31.42 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=65.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHH-----HHhhcC-CcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHH-----HHhh
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYL-----QHLCYM-DDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGAL-----RNLS 104 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L-----~nL~~~-~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL-----~nLs 104 (294)
.+.|..+++.++..+|..++..+ ..+..+ +.+.|..+...-..+.+..+++++++.|+..++..+ ..+.
T Consensus 100 ~~~L~~ll~D~d~~VR~~aA~~l~~~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll 179 (244)
T 1lrv_A 100 REQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMT 179 (244)
T ss_dssp SGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGST
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCCHHHHHHHHHcCCHHHHHHHH
Confidence 35666777777777777766532 222211 223444444433445555677778888888777642 2222
Q ss_pred cCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHH
Q psy15592 105 YGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVL 145 (294)
Q Consensus 105 ~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L 145 (294)
. +.+...|..+...-..+.|..++.+ ++..++..+...|
T Consensus 180 ~-D~d~~VR~aaa~~l~~~~L~~Ll~D-~d~~VR~~aa~~l 218 (244)
T 1lrv_A 180 Q-DPEPEVRRIVASRLRGDDLLELLHD-PDWTVRLAAVEHA 218 (244)
T ss_dssp T-CSSHHHHHHHHHHCCGGGGGGGGGC-SSHHHHHHHHHHS
T ss_pred c-CCCHHHHHHHHHhCCHHHHHHHHcC-CCHHHHHHHHHcC
Confidence 2 2355567777766677788888877 5888887776543
No 120
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=52.51 E-value=2e+02 Score=29.10 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=52.7
Q ss_pred HHHHHHhhc-----CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC------CCCHHHHHHHHHHHHHhh
Q psy15592 36 LTEVISFLS-----NPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG------HESPDVFRNACGALRNLS 104 (294)
Q Consensus 36 i~~Lv~lL~-----s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~------s~~~~v~~~a~~aL~nLs 104 (294)
++.++.++. .+++.++..+++++...+.--... ..-+++++..+- ++++.++..|+.++.+++
T Consensus 492 ~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~------~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~ 565 (980)
T 3ibv_A 492 SQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE------SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFV 565 (980)
T ss_dssp HHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC------CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC------chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHH
Confidence 455556655 678999999999998876422111 133555555443 467789999999999998
Q ss_pred cCCCChhhHHHHHhcCChHHHHHHh
Q psy15592 105 YGRQNDENKRAIKNAGGIPLLINLL 129 (294)
Q Consensus 105 ~~~~~~~~k~~i~~~g~i~~Lv~lL 129 (294)
. .++..+. .-++.++.-+
T Consensus 566 ~-----~~~~~L~--~~~~~il~~l 583 (980)
T 3ibv_A 566 K-----SIKKQVV--NYTESSLAML 583 (980)
T ss_dssp H-----HTTTTCS--SSHHHHHHHT
T ss_pred H-----HhhHHhh--hHHHHHHHHH
Confidence 4 3444442 4555566554
No 121
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=52.30 E-value=19 Score=29.53 Aligned_cols=69 Identities=9% Similarity=0.116 Sum_probs=46.9
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHH
Q psy15592 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWN 147 (294)
Q Consensus 78 i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~n 147 (294)
+..|.+-|+++++.++..|+..|-.+... ....-...+....-+..|++++.+..+..+++.++..+..
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkN-cG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 112 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKN-CGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQT 112 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHH-SHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 55677888899999999999888888751 0133345565556677777777654566676666655443
No 122
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=51.82 E-value=38 Score=34.39 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15592 48 NVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSY 105 (294)
Q Consensus 48 ~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~ 105 (294)
+.++..+++++...+.--......+.. .++.|+..|.++++.++..|+.++.+++.
T Consensus 514 ~~v~~~~~~~lgry~~~~~~~~~~l~~--vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 514 AVVASDIMYVVGQYPRFLKAHWNFLRT--VILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHHH--HHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 344445778887655221122223332 47788888888899999999999999994
No 123
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=51.42 E-value=65 Score=27.13 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=46.5
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy15592 33 DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~n 102 (294)
...++.++.+...++.++|...+.+|...+..+.+.-.. .++.|..+|+++++.+...+..+..+
T Consensus 52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~-----~l~~L~~Ll~d~d~~V~K~~I~~~~~ 116 (257)
T 3gs3_A 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPH-----VINVVSMLLRDNSAQVIKRVIQACGS 116 (257)
T ss_dssp HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345677777777888999999999999888555443322 36688888888888877766655433
No 124
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=49.42 E-value=33 Score=26.32 Aligned_cols=73 Identities=15% Similarity=0.038 Sum_probs=55.0
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhcc-----CCCHHHHHHHHHHHHHhcc
Q psy15592 77 GIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRK-----TADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 77 ~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~-----~~~~~~~~~a~~~L~nLs~ 150 (294)
++..|.+-|+++++.++..|+..|-.+... ....-...+....-+..|++++.. ..+..++..++..+..-+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkN-CG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNH-CGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-SCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-cCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 366788888999999999999888888752 134556777777788888888864 2478899888887766543
No 125
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=48.54 E-value=2.2e+02 Score=28.68 Aligned_cols=99 Identities=7% Similarity=-0.010 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCccc-HHH-HHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcCCCChhhHHHHHh
Q psy15592 46 PNNVIKANAAAYLQHLCYMDDPN-KQK-TRSLGGIPPLVKLLGH-----ESPDVFRNACGALRNLSYGRQNDENKRAIKN 118 (294)
Q Consensus 46 ~~~~~~~~a~~~L~nL~~~~~~~-k~~-i~~~g~i~~Lv~lL~s-----~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~ 118 (294)
.+-..++.++.+++.++..-.+. ... +.. .++.|+.+... +++.++..+++++...+. .-..+...+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~--v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~--~~~~~~~~l-- 538 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVT--VIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPR--FLKAHWNFL-- 538 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHH--HHHHCHHHH--
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHH--HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHH--HHHhHHHHH--
Confidence 45677888889999887321111 111 111 24445544332 223344457788877663 111112212
Q ss_pred cCChHHHHHHhccCCCHHHHHHHHHHHHHhccc
Q psy15592 119 AGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151 (294)
Q Consensus 119 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 151 (294)
...++.++..|.+ .++.++..|+.++.+++..
T Consensus 539 ~~vl~~ll~~l~~-~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 539 RTVILKLFEFMHE-THEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 2355677777766 4899999999999999873
No 126
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=48.36 E-value=69 Score=28.79 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=66.6
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH---hhc----
Q psy15592 33 DPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN---LSY---- 105 (294)
Q Consensus 33 ~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~n---Ls~---- 105 (294)
...++.++++-..++.++|...+.+|...+..+.+.- .. .++.|..+|.++++.+...+..+..+ +++
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~---~~--~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL---LK--LIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH---HH--HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778999999999999999999999998886544432 22 36688889998888877665544333 332
Q ss_pred -CCCCh----hhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHH
Q psy15592 106 -GRQND----ENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWN 147 (294)
Q Consensus 106 -~~~~~----~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~n 147 (294)
++..+ ..-..+. ..-..++.++.+ .+..++..++..+-.
T Consensus 137 ~~~~~~~~~e~~W~~m~--~lK~~Il~~~ds-~n~GVrl~aiKFle~ 180 (386)
T 3o2t_A 137 KSRVISELQEACWDMVS--AMAGDIILLLDS-DNDGIRTHAIKFVEG 180 (386)
T ss_dssp HC-CCCHHHHHHHHHHH--HHHHHHHHGGGC-SSHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHH--HHHHHHHHHhcc-CCcchHHHHHHHHHH
Confidence 10010 1111111 122344455554 477888777765544
No 127
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=47.68 E-value=1.3e+02 Score=30.83 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=58.7
Q ss_pred hHHHHHHh----ccCCCHHHHHHHHHHHHHhcccchhhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHH
Q psy15592 122 IPLLINLL----RKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGV 197 (294)
Q Consensus 122 i~~Lv~lL----~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~ 197 (294)
++.+.+.+ .. .+.+-+...+.+|+|+... ..++.+..++..... .. ......+...|..+
T Consensus 438 v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~-~~----~~~~~rvr~aAi~A 501 (1056)
T 1lsh_A 438 LQPLHDLLSQSSDR-AKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGK-SL----DEYSTRVQAEAIMA 501 (1056)
T ss_dssp THHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSS-CC----CCSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccc-cc----cccchHHHHHHHHH
Confidence 44444444 34 3667777888888887653 245556666532100 00 01113466677888
Q ss_pred HHhhhccCHH-HHHHH---------------------HhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCC
Q psy15592 198 LRNASSAGEY-ARKKL---------------------RECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRC 254 (294)
Q Consensus 198 L~nLa~~~~~-~r~~~---------------------~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 254 (294)
|++++...+. .+..+ .++..-...|-.+.. .. ..+.+..+..-....|.+++...
T Consensus 502 Lr~~~~~~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~~~l~~ia~-~l-~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 502 LRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVALVSMVAV-RL-RREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp TTTGGGTCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCHHHHHHHHH-HH-TTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhhhhchHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcCHHHHHHHHH-HH-hhCchHHHHHHHHHHHHHHHhcC
Confidence 8888765431 22211 111121222222221 11 13455678888888888887554
No 128
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=46.85 E-value=34 Score=26.91 Aligned_cols=72 Identities=13% Similarity=0.053 Sum_probs=54.0
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhcc-----CCCHHHHHHHHHHHHHhcc
Q psy15592 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRK-----TADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 78 i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~-----~~~~~~~~~a~~~L~nLs~ 150 (294)
+..|.+-|++.++.++..|+.+|-.+... ....-...+....-+..|++++.. ..+..+++.++.++..-+.
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkN-CG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKN-CGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHH-SHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHH-cCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 56788888999999999999888888751 123445667777788889999863 2468888888888766543
No 129
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=46.82 E-value=1.5e+02 Score=26.07 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=84.6
Q ss_pred cCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcC---ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC
Q psy15592 32 RDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLG---GIPPLVKLLGHESPDVFRNACGALRNLSYGRQ 108 (294)
Q Consensus 32 ~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g---~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~ 108 (294)
..+.+..+.+.+..++-++-.-|..++..+-..+...-..+...+ -+...-.+|.+++--.++.++..|+.|-.
T Consensus 162 ~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLl--- 238 (341)
T 1upk_A 162 WSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLL--- 238 (341)
T ss_dssp HSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH---
T ss_pred ccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh---
Confidence 344566788888889999998888888875544443333333322 24566679999999999999999999998
Q ss_pred ChhhHHHHH----hcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccc
Q psy15592 109 NDENKRAIK----NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE 152 (294)
Q Consensus 109 ~~~~k~~i~----~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~ 152 (294)
+..|...+. +...+..++.+|++ ....++..|.-+..-...+|
T Consensus 239 dr~N~~vM~~Yis~~~nLkl~M~LL~d-~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 239 DRHNFTIMTKYISKPENLKLMMNLLRD-KSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp SGGGHHHHHHHTTCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHCS
T ss_pred CchHHHHHHHHhCCHHHHHHHHHHhcC-chhchhhhhhhheeeeeeCC
Confidence 666765554 44567778888888 48888988887766655554
No 130
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=46.57 E-value=34 Score=26.23 Aligned_cols=70 Identities=11% Similarity=0.021 Sum_probs=52.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhh
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMD-DPNKQKTRSLGGIPPLVKLLGH------ESPDVFRNACGALRNLS 104 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~-~~~k~~i~~~g~i~~Lv~lL~s------~~~~v~~~a~~aL~nLs 104 (294)
++..|.+-|+++++.++..|...|-.+..+. .....+|....-+.-|++++.. .++.|+..++..+..-+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4677888889999999999999888777542 3355556555566778888764 36789998888876655
No 131
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=44.58 E-value=1.5e+02 Score=25.77 Aligned_cols=127 Identities=9% Similarity=0.063 Sum_probs=76.9
Q ss_pred HHHhhhcccccc--ccccccc--cCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc--CChHHHHHhhC
Q psy15592 13 EEFYSPSLNKKC--RNSSLRW--RDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL--GGIPPLVKLLG 86 (294)
Q Consensus 13 ~~al~~l~~l~~--~~~~~i~--~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~--g~i~~Lv~lL~ 86 (294)
|.++..|.++.. ..-..|. +...+..|+ +..+..+.+++.|+++|....++|++....|... .-+..++.-|.
T Consensus 46 e~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~ 124 (315)
T 3qml_C 46 EDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALS 124 (315)
T ss_dssp HHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHH
Confidence 556666777621 2222222 223344444 3345677899999999999888999888877764 22333333332
Q ss_pred ----C---CCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCC--CHHHHHHHHHHHHHh
Q psy15592 87 ----H---ESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTA--DAEVKELVTGVLWNL 148 (294)
Q Consensus 87 ----s---~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~--~~~~~~~a~~~L~nL 148 (294)
. ....++..-+++|-.|.. ++ ..+ ...++..|.+++.. . +..++..++..+..+
T Consensus 125 ~~~~~~~~~~~~l~KR~LsII~~L~~---~~---~~F-~~~~m~~L~~ly~~-~~~d~~~k~Kvl~li~d~ 187 (315)
T 3qml_C 125 NLNDSNHRSSNILIKRYLSILNELPV---TS---EDL-PIYSTVVLQNVYER-NNKDKQLQIKVLELISKI 187 (315)
T ss_dssp HHHCC--CCCHHHHHHHHHHHHHSCC---CS---TTC---CCHHHHHHHHHH-TTTCHHHHHHHHHHHHHH
T ss_pred HHhhcccchhHHHHHHHHHHHHHHhc---Ch---Hhh-hhccHHHHHHHHcc-CCCCHHHHHHHHHHHHHH
Confidence 2 233566666788888885 32 112 25577888888865 4 788888777666554
No 132
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=44.30 E-value=31 Score=26.93 Aligned_cols=70 Identities=10% Similarity=0.006 Sum_probs=46.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMD-DPNKQKTRSLGGIPPLVKLLGH-ESPDVFRNACGALRNLS 104 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~-~~~k~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~aL~nLs 104 (294)
++..|.+-|.+.++.++..|...|-.+..+. .....+|....-+.-|+.++.. .++.|+..++..+..-+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 3667777788899999988888877666432 2344444443445556666654 56788888887765554
No 133
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=43.00 E-value=32 Score=26.04 Aligned_cols=70 Identities=10% Similarity=0.042 Sum_probs=47.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-ccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDD-PNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLS 104 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs 104 (294)
++..|.+-|.+.++.++..|...|-.+..+.+ .....|....-+.-|+.++...++.|+...+..+...+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 46677777889999999888887776664322 22333333334455666666678889988888876655
No 134
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=42.31 E-value=23 Score=34.06 Aligned_cols=85 Identities=24% Similarity=0.172 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHH
Q psy15592 49 VIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINL 128 (294)
Q Consensus 49 ~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~l 128 (294)
.+|+.|+.+|+.+ ..=++. ...+..|+..+..+.=+++-.++-.|+.+. +--.. + .+.++.++..
T Consensus 243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~----DLL~~--L--d~Vv~aVL~G 307 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK----EFVED--K--DGLCRKLVSL 307 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG----GGCCC--H--HHHHHHHHHH
T ss_pred ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH----HHHHH--H--HHHHHHHHhh
Confidence 5799999999888 442222 344556665555666688888888888883 21111 1 3456777777
Q ss_pred hccCCCHHHHHHHHHHHHHhc
Q psy15592 129 LRKTADAEVKELVTGVLWNLS 149 (294)
Q Consensus 129 L~~~~~~~~~~~a~~~L~nLs 149 (294)
|.+ .+.+++..|..+|.-++
T Consensus 308 L~D-~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 308 LSS-PDEDIKLLSAELLCHFP 327 (800)
T ss_dssp TTC-SSHHHHHHHHHHHTTSC
T ss_pred cCC-cccHHHHHHHHHhhhhc
Confidence 877 58899999999999888
No 135
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=39.25 E-value=19 Score=30.35 Aligned_cols=101 Identities=12% Similarity=0.072 Sum_probs=61.3
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCcc-cHHHHHhcCChHHHHHhhC----C----CCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 44 SNPNNVIKANAAAYLQHLCYMDDP-NKQKTRSLGGIPPLVKLLG----H----ESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 44 ~s~~~~~~~~a~~~L~nL~~~~~~-~k~~i~~~g~i~~Lv~lL~----s----~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
.+.++..+.-+++++.|+- .++. .+..+........+++.+. + .+..++..++..+.|++.. ....+.
T Consensus 100 ~~~~~~~~ml~lR~l~NlF-~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~--~~~~~~ 176 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCF-NNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSAL--VTKGNS 176 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHT-TCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHH--HHTSCS
T ss_pred CCCchhHHHHHHHHHHHcc-cCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHH--Hhhccc
Confidence 3557788999999999987 4555 4544433222334444332 1 3567999999999999961 111111
Q ss_pred HHHhcCChHHHHHHhcc--------CCCHHHHHHHHHHHHHhcc
Q psy15592 115 AIKNAGGIPLLINLLRK--------TADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 115 ~i~~~g~i~~Lv~lL~~--------~~~~~~~~~a~~~L~nLs~ 150 (294)
+......+++++.. ..+.+....++-+|++|..
T Consensus 177 ---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 177 ---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp ---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 12334456666642 1366777777778888765
No 136
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=39.12 E-value=38 Score=26.64 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=50.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhh
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMD-DPNKQKTRSLGGIPPLVKLLGH------ESPDVFRNACGALRNLS 104 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~-~~~k~~i~~~g~i~~Lv~lL~s------~~~~v~~~a~~aL~nLs 104 (294)
++..|.+-|+++++.++..|...|-.+..+. .....+|....-+.-|+.++.. .+..|+..++..+..-+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3667778888999999999998887777542 2345555555556778888753 35788888888876655
No 137
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=38.59 E-value=67 Score=24.62 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=50.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-ccHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhh
Q psy15592 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDD-PNKQKTRSLGGIPPLVKLLGH------ESPDVFRNACGALRNLS 104 (294)
Q Consensus 35 ~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~-~~k~~i~~~g~i~~Lv~lL~s------~~~~v~~~a~~aL~nLs 104 (294)
++..|.+-|.+.++.++..|...|-.+..+.. .....|....-+.-|++++.. .+++|+...+..+..-+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 46788888889999999999988877764332 234455555556778888863 46789998888886665
No 138
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=37.85 E-value=1.2e+02 Score=30.85 Aligned_cols=71 Identities=11% Similarity=0.023 Sum_probs=50.2
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHh
Q psy15592 44 SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKN 118 (294)
Q Consensus 44 ~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~ 118 (294)
.+.+++++..+..++...... -.-..+....-++.++.+|.+ ++++..|+.+|..+...+..++.+..+++
T Consensus 203 ~~~~~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~ 273 (980)
T 3ibv_A 203 NAKNYGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLN 273 (980)
T ss_dssp HTTCHHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHH
Confidence 347888888888888875422 123455555667888888875 78999999999999864445666665553
No 139
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=35.95 E-value=1.3e+02 Score=27.84 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=73.2
Q ss_pred cccCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCH--H-HHHHHHHHHHHhhcC
Q psy15592 30 RWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP--D-VFRNACGALRNLSYG 106 (294)
Q Consensus 30 i~~~g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~--~-v~~~a~~aL~nLs~~ 106 (294)
+.+.=.++.++..|.++++.+...|+.+|. ..+-+..+...+.+..|+.++-+.+. . +....=.++..|+.
T Consensus 112 VLevysve~i~~aL~S~~~~l~~~~ckVI~-----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lss- 185 (500)
T 3vld_A 112 VLEVYSAEDLVKALRSEIDPLKVAACRVIE-----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLST- 185 (500)
T ss_dssp HHHHSCHHHHHHHHTSSCHHHHHHHHHHHH-----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTT-
T ss_pred HHHhCCHHHHHHHHhcCChHHHHHHHHHhc-----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCc-
Confidence 334556788888999999999989988887 23456677788888999998877543 2 66666677888885
Q ss_pred CCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHH
Q psy15592 107 RQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLW 146 (294)
Q Consensus 107 ~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~ 146 (294)
++-.|..+.+ ...+.|..+=+. .++.+....+..+-
T Consensus 186 --deLirrril~-nnl~lL~~vK~~-~~~i~~sRLLdll~ 221 (500)
T 3vld_A 186 --DELIRRRLFD-NNLPYLVSVKGR-METVSFVRLIDFLT 221 (500)
T ss_dssp --SHHHHHHHHT-TTHHHHHHHHHH-CCHHHHHHHHHHHH
T ss_pred --hHHHHHHHHH-HhHHHHHHHhcC-CCceeHHHHHHHHH
Confidence 5556777775 466666555443 46555544444433
No 140
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=30.95 E-value=1.8e+02 Score=29.65 Aligned_cols=60 Identities=22% Similarity=0.130 Sum_probs=40.9
Q ss_pred CHHHHHHhh----cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhC-------CCCHHHHHHHHHHHHHh
Q psy15592 35 NLTEVISFL----SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLG-------HESPDVFRNACGALRNL 103 (294)
Q Consensus 35 ~i~~Lv~lL----~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~-------s~~~~v~~~a~~aL~nL 103 (294)
.++.+.++| ...+.+.+..+..+|+|+-. +. .++.|.+++. +....++..|+.+|+.+
T Consensus 437 ~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~ 505 (1056)
T 1lsh_A 437 LLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--PN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNI 505 (1056)
T ss_dssp GTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--GG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTG
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--hh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHh
Confidence 355555444 56778888899999999883 32 3556666653 12457888888888888
Q ss_pred hc
Q psy15592 104 SY 105 (294)
Q Consensus 104 s~ 105 (294)
+.
T Consensus 506 ~~ 507 (1056)
T 1lsh_A 506 AK 507 (1056)
T ss_dssp GG
T ss_pred hh
Confidence 85
No 141
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=30.49 E-value=2.8e+02 Score=24.36 Aligned_cols=185 Identities=11% Similarity=0.013 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcC---ChH
Q psy15592 47 NNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAG---GIP 123 (294)
Q Consensus 47 ~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g---~i~ 123 (294)
++++-..+...|+.+.+ ++.....+...+.+..+++....++=++...|..+++.|-.. +..........+ ...
T Consensus 136 ~~diAl~~G~mLRecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~--Hk~lvaefL~~nyd~Ff~ 212 (341)
T 1upk_A 136 SPEIALNCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR--HKLLSAEFLEQHYDRFFS 212 (341)
T ss_dssp STTTHHHHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS--SHHHHHHHHHHTHHHHHH
T ss_pred cchhHhHHHHHHHHHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc--cHHHHHHHHHHhHHHHHH
Confidence 44555677777888775 567777778888889999999999999999999999998762 444444444322 234
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhhHHHHh----hChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHH
Q psy15592 124 LLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIID----DGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLR 199 (294)
Q Consensus 124 ~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~r~~i~~----~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~ 199 (294)
..-+||.+ ++.-++++++..|..|-.+..|-..+.. ..-+.+++.+|...+ ..|+..|..+..
T Consensus 213 ~y~~Ll~S-~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s------------k~Iq~EAFhVFK 279 (341)
T 1upk_A 213 EYEKLLHS-ENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS------------RNIQFEAFHVFK 279 (341)
T ss_dssp HHHHHTTC-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC------------HHHHHHHHHHHH
T ss_pred HHHHHhcC-CcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch------------hchhhhhhhhee
Confidence 55567777 5999999999999999887777665543 345678888884211 347888887777
Q ss_pred hhhcc---CHHHHHHHHhhcCcHHHHHHHHHHhHhhcCCCcc---hHHHHHHHHHHh
Q psy15592 200 NASSA---GEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNK---SVENCVCILRNL 250 (294)
Q Consensus 200 nLa~~---~~~~r~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~---~~e~a~~~L~nL 250 (294)
-...+ +++..+.+... =+.|+.++..-..+-..|+. -++..+..+.+|
T Consensus 280 vFVANP~K~~~I~~IL~~N---r~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L 333 (341)
T 1upk_A 280 VFVANPNKTQPILDILLKN---QAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL 333 (341)
T ss_dssp HHHHCSSCCHHHHHHHHHT---HHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred eeeeCCCCChHHHHHHHHH---HHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHhC
Confidence 66544 45666666663 46899999876543323432 344456666655
No 142
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=29.68 E-value=1.1e+02 Score=23.39 Aligned_cols=71 Identities=8% Similarity=0.017 Sum_probs=48.3
Q ss_pred hHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCChHH-HHHHhcc--CCCHHHHHHHHHHHHHhc
Q psy15592 78 IPPLVKLLG-HESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPL-LINLLRK--TADAEVKELVTGVLWNLS 149 (294)
Q Consensus 78 i~~Lv~lL~-s~~~~v~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~-Lv~lL~~--~~~~~~~~~a~~~L~nLs 149 (294)
+..|.+-|+ ++++.++..|+..|-.+... ..+.-...+....-+.. |++++.. ..+..+++.++..+..-+
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkN-cG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKN-CGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-SCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHH-hCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 557778887 47899999999888877752 12445566666677777 7888743 234577777776665543
No 143
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=27.39 E-value=2.8e+02 Score=25.14 Aligned_cols=102 Identities=12% Similarity=0.055 Sum_probs=65.4
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcC-ChHHHHHhhCC--------CCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 44 SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLG-GIPPLVKLLGH--------ESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 44 ~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g-~i~~Lv~lL~s--------~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
.+..+..+..+.+++.|+- .++.....+.... -...+++.+.. .+..++..++..+.|+|.- ....+.
T Consensus 272 ~~~~~an~MltlR~laNlF-~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~--~~~~~~ 348 (425)
T 3pst_A 272 GNKNITLTMLTVRILVNCF-NNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSAL--VTKGNS 348 (425)
T ss_dssp TCSSHHHHHHHHHHHHHHT-TCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHH--HHHSCS
T ss_pred CCCChhHHHHHHHHHHHhc-CCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHH--Hhcccc
Confidence 3567788999999999977 4555455555432 23556665431 2567999999999999951 111010
Q ss_pred HHHhcCChHHHHHHhcc--------CCCHHHHHHHHHHHHHhccc
Q psy15592 115 AIKNAGGIPLLINLLRK--------TADAEVKELVTGVLWNLSSC 151 (294)
Q Consensus 115 ~i~~~g~i~~Lv~lL~~--------~~~~~~~~~a~~~L~nLs~~ 151 (294)
+...+..+.+++.. ..+.+....++.+|++|...
T Consensus 349 ---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 349 ---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp ---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 12233466666651 24788888899999998763
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.35 E-value=66 Score=26.43 Aligned_cols=71 Identities=8% Similarity=0.032 Sum_probs=47.4
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-ccHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q psy15592 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDD-PNKQKTRSLGGIPPLVKLLGH-ESPDVFRNACGALRNLS 104 (294)
Q Consensus 34 g~i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~-~~k~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~aL~nLs 104 (294)
.++..|.+-|.+.++.++..|...|-.+..+-. ....+|....-+..|+++++. .+++|+...+..+...+
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 346778888889999999999988877764322 234444444444556666644 46788888888776665
No 145
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=24.35 E-value=5.9e+02 Score=26.07 Aligned_cols=109 Identities=7% Similarity=-0.016 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHhcccch-hhHHHHhhChHHHHHHhhccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHH
Q psy15592 133 ADAEVKELVTGVLWNLSSCED-LKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKK 211 (294)
Q Consensus 133 ~~~~~~~~a~~~L~nLs~~~~-~r~~i~~~g~i~~L~~ll~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~ 211 (294)
.+....+.++++++.+|.+-. ..+.-.=-.+++.|..+.....|.+ ....+..+.++++...+.-
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd-------~k~~vas~i~~vlgrY~~w------- 556 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKD-------NKAIIASNIMYIVGQYPRF------- 556 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHH-------HHHHHHHHHHHHHHHCHHH-------
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccc-------hhHHHHHHHHHHHhhhHHH-------
Confidence 468889999999999986432 1221111133444444442111111 0112333344455444321
Q ss_pred HHhhcCcHHHHHHHHHHhHhhcCCCcchHHHHHHHHHHhccCCccc
Q psy15592 212 LRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQEV 257 (294)
Q Consensus 212 ~~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~ 257 (294)
+..+...++..+..+-... .+.++.+++.|+.++..+|..+.+.
T Consensus 557 l~~h~~~L~~vl~~L~~~m--~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 557 LRAHWKFLKTVVNKLFEFM--HETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHCHHHHHHHHHHHHHHT--TCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHhCHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222333333333222 2334689999999999999888543
No 146
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=23.85 E-value=3e+02 Score=24.38 Aligned_cols=101 Identities=13% Similarity=0.060 Sum_probs=63.5
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCC-hHHHHHhhC--------CCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy15592 44 SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGG-IPPLVKLLG--------HESPDVFRNACGALRNLSYGRQNDENKR 114 (294)
Q Consensus 44 ~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~-i~~Lv~lL~--------s~~~~v~~~a~~aL~nLs~~~~~~~~k~ 114 (294)
.+..+..+..+.+++.|+- .++.....+..... ...+++.+. ..+..++..++..+.|++.- . .+.
T Consensus 209 ~~~~~~n~MltlR~laNlF-~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~--~--~~~ 283 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCF-NNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSAL--V--TKG 283 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHT-TCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHH--H--HHT
T ss_pred CCCChhHHHHHHHHHHHhc-cCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHH--H--hcc
Confidence 3567788999999999977 45554455553321 234444432 12567999999999999951 1 110
Q ss_pred HHHhcCChHHHHHHhc-----c---CCCHHHHHHHHHHHHHhcc
Q psy15592 115 AIKNAGGIPLLINLLR-----K---TADAEVKELVTGVLWNLSS 150 (294)
Q Consensus 115 ~i~~~g~i~~Lv~lL~-----~---~~~~~~~~~a~~~L~nLs~ 150 (294)
. .+......+.+++. . ..+.+....++.+|++|..
T Consensus 284 ~-~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 284 N-SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp C-SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred c-chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 0 01223346666665 1 1478888888889999875
No 147
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=21.58 E-value=2.1e+02 Score=23.83 Aligned_cols=78 Identities=18% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy15592 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRA 115 (294)
Q Consensus 36 i~~Lv~lL~s~~~~~~~~a~~~L~nL~~~~~~~k~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~aL~nLs~~~~~~~~k~~ 115 (294)
++.+.+...++++.+|..|+..++.-+.. +..+...-.. ++.|-.+..+++.-|+...++.|+.+|.. +++--..
T Consensus 141 l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~dp~~l--l~iL~~L~~D~s~yVrKSVan~LrD~SK~--~Pd~V~~ 215 (240)
T 3l9t_A 141 LPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKENPNEA--IRRIADLKEDVSEYVRKSVGNALRDISKK--FPDLVKI 215 (240)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTCHHHH--HHHHHTTTTCSCHHHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcCHHHH--HHHHHHhcCChHHHHHHHHHHHHHHHhhh--CHHHHHH
Q ss_pred HHh
Q psy15592 116 IKN 118 (294)
Q Consensus 116 i~~ 118 (294)
+++
T Consensus 216 ~~~ 218 (240)
T 3l9t_A 216 ELK 218 (240)
T ss_dssp HHH
T ss_pred HHH
No 148
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=21.44 E-value=1.7e+02 Score=24.29 Aligned_cols=145 Identities=12% Similarity=0.006 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHhcCChHHHHHHhccCCCHHHHHHHHHHHHHhcccch-hhHHHHhhChHHHHHHhh
Q psy15592 93 FRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCED-LKKSIIDDGLQVVVNHII 171 (294)
Q Consensus 93 ~~~a~~aL~nLs~~~~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~-~r~~i~~~g~i~~L~~ll 171 (294)
+.-+...+|-+..+ +... +.+..++.-.-++.++..+..++.+++|+-.++. .+..+.+......+...+
T Consensus 71 ~fP~lDllRl~~~~---~~~~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i 141 (253)
T 3gae_A 71 KTPAYDIVRLIVKK---LPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETI 141 (253)
T ss_dssp CHHHHHHHHHHGGG---CSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHS
T ss_pred cchHHHHHHHHHcC---CchH------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHH
Confidence 33466677777652 2211 2223333222223477889999999999988887 566665443333333333
Q ss_pred ccCCCCCCCCCCccchhhHHHhHhHHHHhhhccCHHHHHHHHhhcCcHHHHHHHHHHh---HhhcCCCcchHHHHHHHHH
Q psy15592 172 IPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSA---IEKSNIGNKSVENCVCILR 248 (294)
Q Consensus 172 ~~~s~~~~~~~~~~~~~~v~~~a~~~L~nLa~~~~~~r~~~~~~~g~i~~Lv~lL~~~---~~~~~~~~~~~e~a~~~L~ 248 (294)
... ..+. .......++..++..+.|+|...-..+. + ......+++++... .+....|++..-.++.+|.
T Consensus 142 ~~~--~~~~--~~~~~~nl~iA~ATl~~N~av~~~~~~~---~-~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlG 213 (253)
T 3gae_A 142 DTE--FSQA--SAKQSQNLAIAVSTLIFNYSALVTKGNS---D-LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYG 213 (253)
T ss_dssp CSC--CTTC--CHHHHHHHHHHHHHHHHHHHHHHHTSCS---C-TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHH
T ss_pred HHH--hhhc--ccCCchhHHHHHHHHHHHHHHHHhhccc---h-HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 110 0000 0012345666777788898863211110 1 23455666766531 1000125688889999999
Q ss_pred HhccCC
Q psy15592 249 NLSFRC 254 (294)
Q Consensus 249 nLs~~~ 254 (294)
+|.+..
T Consensus 214 tL~~~~ 219 (253)
T 3gae_A 214 NLATVE 219 (253)
T ss_dssp HHHHHS
T ss_pred HHHhCc
Confidence 999754
Done!